Citrus Sinensis ID: 047033

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
SLSLAFSLSSSFSLMAAIPNPTLQSPSTCFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL
Secondary Structure (PSIPRED)
ccccEEEccccccEEEEccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccccEEEccccccccHHHHHHHHccccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHcccccccEEEEEEccccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEcHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccHHHHEEEcccccccccHEEccccccccccccccEEEEcccccHHHHHHHHHcccccccccEEEcccccccccccEEEccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEcEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHEEEEcccccccHHHHEEEEEEEcccccHHHEHEEHccccHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEccccEEEEcccccccccccEEEccccccHHHcccccccccccccccccccccccccEEEcccccccccccEEccccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccEcEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEccccEEEEccccccHHHHHcccccc
Coil and Loop (DISEMBL)
SLSLAFSLSSSFSlmaaipnptlqspstcflkpcsdslpnlgfsisvsfspsvssslsksnkiflhsepkkLAVSArsadenitegtftsrstnrtnvrrHTISVfvgdesgmiNRIAGVFARRGYNIESLavglnkdkALFTIVVYGTDKVLQQVMEQLQKLVNVLKvedlsnepqVERELMLIKVnadpkfraeIFLFPCLGVHLQIRWLVDIFRAKIvdiseysltievtgdpgkMVAVQRNLSKFGIREIARTGKIALRREklgasapfwrfsaasypdlnetptidglvgaghrpllsetdtvegdvypvepsdgltvnqvldphwgvlndddtsglrshtlsmlvndspgvlniVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDlhevrdlthlpfAERELMLIKVAVNTTARRDVLDIATIFRakavdvsdhtiTLELTGDLDKMVALQRLLepygicevarTGRVALVREsgvdskylrgysfpl
Flexible Loop (DISEMBL)
SLSLAFSLSSSFSLMAAIPNPTLQSPSTCFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKlavsarsadenitegtftsrstnrtnvrrhtisvfvgdesgmiNRIAGVFARRGYNIESLavglnkdkALFTIVVYGTDKVLQQVMEQLQKLVNVLkvedlsnepqVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLtievtgdpgkmVAVQRNlskfgireiartgkIALRREKLGASAPFWRFsaasypdlneTPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSmlvndspgvLNIVTGVFARRGYNIQSLavghaeteglsRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAvnttarrdvLDIATIfrakavdvsdhtITLELTGDLDKMVALQRLLEPygicevartgRVALvresgvdskylrgysfpl
Low Complexity Region (SEG)
slslafslsssfslMAAIPNPTLQSPSTCFLKPCSDSLPNLGFsisvsfspsvssslsksnkiflHSEPKKLAVSARSADENITEGtftsrstnrtnvrrHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL
Disordered region (IsUnstruct)
***************************TCFLKPCSDSLPNLGFSI****************************************************VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR******
Disordered Region (DISOPRED)
*******LSSSFSLMAAIPNPTLQSPSTCFL*********************************************************************HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIAL**************************************************YPVEPSDGLTVNQVLDPHWG*********LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRE********RG*SFP*
Disordered Region (DISEMBL)
SLSLAFSLSSSFSLMAAIPNPTLQSPSTCFLKPCSDSLPNLGFSISVS***********SNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL
Disordered Region (DISPRO)
**SLAFSLSSSFSLMAAIPNPTLQSPSTCFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFT*RSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETP*********************GDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLSLAFSLSSSFSLMAAIPNPTLQSPSTCFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q93YZ7	491	Acetolactate synthase sma	yes	no	0.943	0.987	0.710	0.0
Q9SMC2	449	Acetolactate synthase sma	N/A	no	0.702	0.804	0.800	1e-176
Q9FFF4	477	Acetolactate synthase sma	no	no	0.828	0.893	0.705	1e-174
Q55141	172	Acetolactate synthase sma	N/A	no	0.291	0.872	0.542	3e-47
Q9MS98	181	Acetolactate synthase sma	N/A	no	0.293	0.834	0.521	1e-45
Q9TLY1	172	Acetolactate synthase sma	N/A	no	0.303	0.906	0.494	3e-45
P51230	174	Acetolactate synthase sma	N/A	no	0.291	0.862	0.518	3e-44
Q1XDQ7	174	Acetolactate synthase sma	N/A	no	0.293	0.867	0.509	4e-44
O78451	169	Acetolactate synthase sma	yes	no	0.289	0.881	0.527	1e-43
P65161	168	Putative acetolactate syn	yes	no	0.299	0.916	0.452	6e-33

>sp|Q93YZ7|ILVH2_ARATH Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/504 (71%), Positives = 411/504 (81%), Gaps = 19/504 (3%)

Query: 15  MAAIPNPTLQSPST-CFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLA 73
           MAAI   +  SPS  C    CSDS P L  S  VSF P+  S LS  +        K++ 
Sbjct: 1   MAAISVSS--SPSIRCLRSACSDSSPALVSSTRVSF-PAKISYLSGISSHRGDEMGKRME 57

Query: 74  VSARSADENITEGTFT--SRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESL 131
              RS D  I++ +F+  S +T ++ VR+HTISVFVGDESGMINRIAGVFARRGYNIESL
Sbjct: 58  GFVRSVDGKISDASFSEASSATPKSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESL 117

Query: 132 AVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADP 191
           AVGLN+DKALFTIVV GT++VLQQV+EQLQKLVNVLKVED+S+EPQVERELML+KVNA P
Sbjct: 118 AVGLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHP 177

Query: 192 KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGI 251
           + RAEI             WLVD FRA++VDI+E++LTIEVTGDPGKM+AV+RNL KF I
Sbjct: 178 ESRAEIM------------WLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQI 225

Query: 252 REIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDT-VEG 310
           REI RTGKIALRREK+GA+APFWRFSAASYPDL E   +  L  +    ++ + +T   G
Sbjct: 226 REIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQKETSAGG 285

Query: 311 DVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGY 370
           DVYPVEP     V+++LD HWG+L D+DTSGLRSHTLS+LVND PGVLNIVTGVFARRGY
Sbjct: 286 DVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGY 345

Query: 371 NIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELML 430
           NIQSLAVGHAET+G+SRITTV+PATDES+SKL+QQLYKL+D+HEV DLTHLPF+ERELML
Sbjct: 346 NIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELML 405

Query: 431 IKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVAR 490
           IK+AVN  ARRDVLDIA+IFRAKAVDVSDHTITL+LTGDLDKMVALQRLLEPYGICEVAR
Sbjct: 406 IKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVAR 465

Query: 491 TGRVALVRESGVDSKYLRGYSFPL 514
           TGRVAL RESGVDSKYLRGYSFPL
Sbjct: 466 TGRVALARESGVDSKYLRGYSFPL 489

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids. Contains 2 repeats, each of them being able to activate partially the catalytic subunit. The enzyme reconstituted with the first repeat is inhibited by leucine, but not by valine or isoleucine and the enzyme reconstituted with the second repeat is not inhibited by any branched-chain amino acid.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMC2|ILVH_NICPL Acetolactate synthase small subunit 1, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 309/386 (80%), Positives = 332/386 (86%), Gaps = 25/386 (6%)

Query: 113 MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172
           MINRIAGVFARRGYNIESLAVGLNKDKALFTIVV GT++VLQQVMEQLQKLVNV+KVEDL
Sbjct: 37  MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVMEQLQKLVNVIKVEDL 96

Query: 173 SNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEV 232
           S EPQVERELMLIK++ADPK+RAE+             WLVD+FRAKIVDIS+ SLTIEV
Sbjct: 97  SKEPQVERELMLIKISADPKYRAEVM------------WLVDVFRAKIVDISDQSLTIEV 144

Query: 233 TGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDG 292
           TGDPGKMVAVQRNLSKFGIREIARTGKIALRREK+G SAPFWRFSAASYPDL      +G
Sbjct: 145 TGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSAASYPDL------EG 198

Query: 293 LVGAG-------HRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSH 345
            + AG         P        EGDVYPVE  D   V+QVLD HWGVLND+DTSGLRSH
Sbjct: 199 AMSAGTISRTIKRTPNGESMSMAEGDVYPVETDDNSGVSQVLDAHWGVLNDEDTSGLRSH 258

Query: 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQ 405
           TLSMLVND+PGVLNIVTGVFARRGYNIQSLAVGHAE EGLSRITTVVP TDES+SKL+QQ
Sbjct: 259 TLSMLVNDTPGVLNIVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESVSKLVQQ 318

Query: 406 LYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLE 465
           LYKL+D+HEVRD+THLPFAERELMLIK+AVN  ARR+VLDIA+IFRAKAVDVSDHTITLE
Sbjct: 319 LYKLVDIHEVRDITHLPFAERELMLIKIAVNAAARRNVLDIASIFRAKAVDVSDHTITLE 378

Query: 466 LTGDLDKMVALQRLLEPYGICEVART 491
           LTGDL KMV LQRLLEPYGICEVART
Sbjct: 379 LTGDLHKMVRLQRLLEPYGICEVART 404

Regulatory subunit of acetohydroxy-acid synthase. Probably involved in feedback inhibition by branched-chain amino acids. Not involved in herbicide tolerance.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q9FFF4|ILVH1_ARATH Acetolactate synthase small subunit 1, chloroplastic OS=Arabidopsis thaliana GN=VAT1 PE=1 SV=1

 Score =  611 bits (1576), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/442 (70%), Positives = 354/442 (80%), Gaps = 16/442 (3%)

Query: 74  VSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAV 133
           +SA S D+ IT     +  T    VRRHTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct: 51  LSAASTDKAITTAQSVA-PTACDRVRRHTISVFVGDESGIINRIAGVFARRGYNIESLAV 109

Query: 134 GLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKF 193
           GLN+DKALFTIVV GTDKVLQQV+EQL KLVNV+KVEDLS EP VERELMLIK+NADP  
Sbjct: 110 GLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIKLNADPST 169

Query: 194 RAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIRE 253
           R+EI             WLVDIFRAKIVD SE SLTIEVTGDPGKMVA+  NL KFGI+E
Sbjct: 170 RSEIM------------WLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKE 217

Query: 254 IARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEG-DV 312
           IARTGKIALRREK+G +APFWRFSAASYP L +  + + +       L    +   G DV
Sbjct: 218 IARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNASSGGDV 277

Query: 313 YPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNI 372
           YPVEP +      VLD HWG++ D+D+SGLRSHTLS+LV + PGVLN++TG  +RRGYNI
Sbjct: 278 YPVEPYNDF--KPVLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNI 335

Query: 373 QSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIK 432
           QSLAVG AE EGLSRITTV+P TDE+I KL++QL KLIDL E++++TH+PFAERELMLIK
Sbjct: 336 QSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNITHMPFAERELMLIK 395

Query: 433 VAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTG 492
           VA +T+ARRDVLDIA +FRAKA+DVSDHTITLE+TGDL KM ALQ  LE YGICEVARTG
Sbjct: 396 VAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQLEAYGICEVARTG 455

Query: 493 RVALVRESGVDSKYLRGYSFPL 514
           RVALVRESGVDS YLRGYS PL
Sbjct: 456 RVALVRESGVDSTYLRGYSLPL 477

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55141|ILVH_SYNY3 Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 128/164 (78%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           HTLS+LV D  GVL  + G+FARRG+NI+SLAVG AE   +SRIT VVP  + +I +L +
Sbjct: 3   HTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLTK 62

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QLYKL+++ +V+D+T  P  ERELML+KV+ N   R +V+++A +FRA+ VD+S+ T+T+
Sbjct: 63  QLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVTI 122

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 508
           E+ GD  KMVA+ ++L  +GI EVARTG++ALVRESGV+++YL+
Sbjct: 123 EVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRESGVNTEYLK 166

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9MS98|ILVH_GALSU Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1

 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 124/165 (75%)

Query: 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLM 403
            HTLS+LV D  GVL  ++G+FARRG+NI SLAVG AE  G+SRIT V+   +  I ++ 
Sbjct: 2   KHTLSVLVEDESGVLTRISGLFARRGFNIDSLAVGPAEKAGISRITMVIRGDNRIIEQIT 61

Query: 404 QQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTIT 463
           + LYKL+++ +++D+T++P  ERELMLIKV      R ++L+IA IFRA+ VD+S+  I 
Sbjct: 62  KHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFII 121

Query: 464 LELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 508
           LE+TGD  K+ A+++LLE YGICE+ARTG++AL RES ++++ LR
Sbjct: 122 LEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRESKINTEILR 166

Galdieria sulphuraria (taxid: 130081)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9TLY1|ILVH_CYACA Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 130/170 (76%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           +TLS+LV D  GVL  + G+FARRG+NI+SLAVG AE +G+SRIT VVP  D ++ +L +
Sbjct: 3   YTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLTK 62

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QLYKL+++ +V ++T +P  EREL+L+K+  +T++R ++L I  +FRAK VD+S++ + L
Sbjct: 63  QLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLVL 122

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 514
           ELTGD  K+ A+Q+LL+ +GI E+ARTG++AL R S V++++L+  S  +
Sbjct: 123 ELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTRTSKVNTEFLKSISMEI 172

Cyanidium caldarium (taxid: 2771)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P51230|ILVH_PORPU Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 126/164 (76%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           HTLS+LV D  GVL+ ++G+FARRG+NI SLAVG AE  G+SRIT VV   + +I +L +
Sbjct: 3   HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTK 62

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QLYKL+++  V+D+T++P  ERELMLIK+ VN+  R + L+I  IFRA  VD+++  I +
Sbjct: 63  QLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLIIV 122

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 508
           E+TGD  K+VA+++LL  +GI E+ARTG+++LVR S ++++YL+
Sbjct: 123 EVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLK 166

Porphyra purpurea (taxid: 2787)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q1XDQ7|ILVH_PORYE Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1

 Score =  179 bits (454), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 126/165 (76%)

Query: 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLM 403
            HTLS+LV D  GVL+ ++G+FARRG+NI SLAVG AE  G+SRIT VV   + +I +L 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 404 QQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTIT 463
           +QLYKL+++  V+D+T++P  ERELMLIK+ +N+  R + L+I  IFRAK VD+++  + 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLI 121

Query: 464 LELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 508
           +E+TGD  K+VA+++LL  +GI E+ARTG++ LVR S ++++YL+
Sbjct: 122 IEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLK 166

Porphyra yezoensis (taxid: 2788)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|O78451|ILVH_GUITH Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 124/163 (76%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           HTLS+LV D  GVL  + G+FARRG+NI+SLAVG  E  G+SRIT VVP+ + +I +L +
Sbjct: 3   HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISRITMVVPSDERTIEQLTK 62

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QLYKL+++ +V D+T+LP  ERELMLIK+ V+T  R + LDI  IFRAK VD+S+  + +
Sbjct: 63  QLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDFLII 122

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYL 507
           E+TGD  K+VA++++L  + I E+ RTG+++LVRES V+++ L
Sbjct: 123 EVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRESNVNTRSL 165

Guillardia theta (taxid: 55529)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P65161|ILVH_MYCTU Putative acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=1 SV=1

 Score =  142 bits (358), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 14/168 (8%)

Query: 99  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN--KDKALFTIVVYGTDKVLQQV 156
           + HT+SV V D+ G++ R+A +F+RRG+NIESLAVG    KD++  TIVV   D  L+Q+
Sbjct: 4   KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query: 157 MEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIF 216
            +QL KL+NV+K+ +  +E  V REL LIKV AD   R+++               V++F
Sbjct: 64  TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVI------------EAVNLF 111

Query: 217 RAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
           RA ++D+S  SLT+E TG+ GK+ A+ R L  FGIREIA++G ++L R
Sbjct: 112 RANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
255577893	493	acetolactate synthase, putative [Ricinus	0.850	0.886	0.784	0.0
356511027	476	PREDICTED: uncharacterized protein LOC10	0.793	0.857	0.836	0.0
356528404	474	PREDICTED: uncharacterized protein LOC10	0.793	0.860	0.824	0.0
225434187	482	PREDICTED: uncharacterized protein LOC10	0.902	0.962	0.735	0.0
30685071	491	ACT domain-containing small subunit of a	0.943	0.987	0.710	0.0
357519313	478	Acetolactate synthase small subunit [Med	0.787	0.847	0.818	0.0
297822923	492	hypothetical protein ARALYDRAFT_482103 [	0.943	0.985	0.716	0.0
388506728	478	unknown [Lotus japonicus]	0.780	0.838	0.816	0.0
147792338	451	hypothetical protein VITISV_043824 [Viti	0.793	0.904	0.809	0.0
359495876	476	PREDICTED: uncharacterized protein LOC10	0.813	0.878	0.788	0.0

>gi|255577893|ref|XP_002529819.1| acetolactate synthase, putative [Ricinus communis] gi|223530696|gb|EEF32568.1| acetolactate synthase, putative [Ricinus communis]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/455 (78%), Positives = 394/455 (86%), Gaps = 18/455 (3%)

Query: 66  HSEPKKLAVSARSADENITEGTFTSR-----STNRTNVRRHTISVFVGDESGMINRIAGV 120
           H +P++  + + +AD +  +   +S      +   + VRRHTISVFVGDESGMINRIAGV
Sbjct: 51  HYQPRRKFIVSATADSHKDDTVLSSNGSVPAAATLSKVRRHTISVFVGDESGMINRIAGV 110

Query: 121 FARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVER 180
           FARRGYNIESLAVGLNKDKALFTIVV GT++VLQQV+EQLQKLVNV+KVEDLS+EPQVER
Sbjct: 111 FARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVVEQLQKLVNVMKVEDLSSEPQVER 170

Query: 181 ELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMV 240
           ELMLIKVNADP +RAEI             WLV IFRAKIVDISE+SLTIEVTGDPGKMV
Sbjct: 171 ELMLIKVNADPSYRAEIM------------WLVGIFRAKIVDISEHSLTIEVTGDPGKMV 218

Query: 241 AVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRP 300
           AVQRNLSKFGIREIARTGKIALRREK+G  APFWRFSAASYPDL E  + D L+G+  R 
Sbjct: 219 AVQRNLSKFGIREIARTGKIALRREKMGECAPFWRFSAASYPDLGEIRSEDALLGSKSRA 278

Query: 301 LLSETDT-VEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLN 359
           +L + +T   GDVYPVE SD   + QVLD HWGVLN++DT+GLRSHTLSMLVNDSPGVLN
Sbjct: 279 VLGDDETSAGGDVYPVETSDSFMLTQVLDAHWGVLNEEDTTGLRSHTLSMLVNDSPGVLN 338

Query: 360 IVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419
           IVTG+FARRGYN+QSLAVGH+ETEGLSRITTVVP TDESISKL+QQLYKLIDLHEVRDLT
Sbjct: 339 IVTGIFARRGYNVQSLAVGHSETEGLSRITTVVPGTDESISKLVQQLYKLIDLHEVRDLT 398

Query: 420 HLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRL 479
           HLPFAERELMLIK+AVN  ARRDVLDIA+IFRAKAVDVSDHTITLELTGDLDKMVALQRL
Sbjct: 399 HLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLELTGDLDKMVALQRL 458

Query: 480 LEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 514
           LEPYGICEVARTGR+ALVRESGVDSKYLRGYSFP+
Sbjct: 459 LEPYGICEVARTGRIALVRESGVDSKYLRGYSFPI 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511027|ref|XP_003524233.1| PREDICTED: uncharacterized protein LOC100779210 [Glycine max]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/421 (83%), Positives = 383/421 (90%), Gaps = 13/421 (3%)

Query: 95  RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQ 154
           R+ VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN+D+ALFTIVV GTDKVL+
Sbjct: 68  RSKVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNEDRALFTIVVSGTDKVLR 127

Query: 155 QVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVD 214
           QVMEQLQKLVNVLKVEDLS EPQVERELMLIKV+ADPK  AE+            +WLVD
Sbjct: 128 QVMEQLQKLVNVLKVEDLSREPQVERELMLIKVHADPKHHAEL------------KWLVD 175

Query: 215 IFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFW 274
           IFRAKIVDISE+S+TIEVTGDPGKM AVQRN SKFGI+EIARTGKIALRREK+GASAPFW
Sbjct: 176 IFRAKIVDISEHSVTIEVTGDPGKMAAVQRNFSKFGIKEIARTGKIALRREKMGASAPFW 235

Query: 275 RFSAASYPDLNETPTIDGLVGAGHRPLLSETDT-VEGDVYPVEPSDGLTVNQVLDPHWGV 333
           R+SAASYPDL     ++ LVGA +   +++ DT V GDVYP+EPSDG TVNQVLD HWGV
Sbjct: 236 RYSAASYPDLEGRTPVNALVGAKNMKPVAKLDTPVGGDVYPIEPSDGFTVNQVLDAHWGV 295

Query: 334 LNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP 393
           LND+DTSG+RSHTLSMLVND+PGVLNIVTGVFARRGYNIQSLAVGHAE EGLSR+TTVVP
Sbjct: 296 LNDEDTSGIRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHAEVEGLSRLTTVVP 355

Query: 394 ATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAK 453
            TDESISKL+QQLYKL++LHEVRD+THLPFAERELMLIK+AVN  ARRDVLDIA+IFRAK
Sbjct: 356 GTDESISKLVQQLYKLVELHEVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAK 415

Query: 454 AVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFP 513
           AVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGR+ALVRESGVDSKYLRGYS+P
Sbjct: 416 AVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRIALVRESGVDSKYLRGYSYP 475

Query: 514 L 514
           L
Sbjct: 476 L 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528404|ref|XP_003532793.1| PREDICTED: uncharacterized protein LOC100810297 [Glycine max]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/421 (82%), Positives = 381/421 (90%), Gaps = 13/421 (3%)

Query: 95  RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQ 154
           R+ VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN+D+ALFTIVV GTDKVL+
Sbjct: 66  RSKVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNEDRALFTIVVSGTDKVLR 125

Query: 155 QVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVD 214
           QVMEQLQKLVNVLKVEDLS EPQVERELMLIKV+ADPK  AE+            +WLVD
Sbjct: 126 QVMEQLQKLVNVLKVEDLSREPQVERELMLIKVHADPKHHAEL------------KWLVD 173

Query: 215 IFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFW 274
           IFRAKIVDIS++S+TIEVTGDPGKM AVQRN SKFGI+EIARTGKIALRREK+GASAPFW
Sbjct: 174 IFRAKIVDISQHSVTIEVTGDPGKMAAVQRNFSKFGIKEIARTGKIALRREKMGASAPFW 233

Query: 275 RFSAASYPDLNETPTIDGLVGAGHRPLLSETDT-VEGDVYPVEPSDGLTVNQVLDPHWGV 333
           R+SAASYPDL     ++ +VGA +   +++ DT V GDVYP+EP DG TVNQVLD HWGV
Sbjct: 234 RYSAASYPDLEGRTPVNAMVGAKNMKPVAKHDTPVGGDVYPIEPPDGFTVNQVLDAHWGV 293

Query: 334 LNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP 393
           LN++DTSG+RSHTLSMLVND+PGVLNIVTGVFARRGYNIQSLAVGHAE EGLSR+TTVVP
Sbjct: 294 LNEEDTSGIRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHAEVEGLSRLTTVVP 353

Query: 394 ATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAK 453
            TDESISKL+QQLYKL++LHEVRD+THLPFAERELMLIK+AVN  ARRDVLDIA+IFRAK
Sbjct: 354 GTDESISKLVQQLYKLVELHEVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAK 413

Query: 454 AVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFP 513
           AVDVS HTITLELTGDLDKMVALQRLLEPYGICEVARTGR+ALVRESGVDSKYLRGYS+P
Sbjct: 414 AVDVSGHTITLELTGDLDKMVALQRLLEPYGICEVARTGRIALVRESGVDSKYLRGYSYP 473

Query: 514 L 514
           L
Sbjct: 474 L 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434187|ref|XP_002279286.1| PREDICTED: uncharacterized protein LOC100261174 [Vitis vinifera] gi|296084341|emb|CBI24729.3| unnamed protein product [Vitis vinifera]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/491 (73%), Positives = 403/491 (82%), Gaps = 27/491 (5%)

Query: 31  LKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTS 90
           + P  DS P+LGFS ++  S  +S           + +  KL VSA SA+  +     T+
Sbjct: 10  VNPRLDSNPHLGFSRALWLSLPISK--------LKNPQLGKLVVSASSAENGVGFNDKTA 61

Query: 91  RSTN------RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTI 144
              N      R+ VRRHTISVFVGDESGMINRIAGVFARRGYNI+SLAVGLNKDKALFTI
Sbjct: 62  AVANPAPSAARSKVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKALFTI 121

Query: 145 VVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLG 204
           VV GT++VLQQV+EQL KLVNVLKVED+S EP VERELMLIKVNA+P++RAEI       
Sbjct: 122 VVSGTERVLQQVVEQLHKLVNVLKVEDISTEPHVERELMLIKVNANPQYRAEIM------ 175

Query: 205 VHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
                 WLV+IFRAKIVDISE+S+TIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR
Sbjct: 176 ------WLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 229

Query: 265 EKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETD-TVEGDVYPVEPSDGLTV 323
           EK+G SAPFWRFSA+SYPDL      +  V    + L SE+D +V GDVYPVEPSDG   
Sbjct: 230 EKMGESAPFWRFSASSYPDLEGEIPENTFVETRTKTLNSESDASVGGDVYPVEPSDGFLF 289

Query: 324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE 383
           N+VLD HWGVL D+DTSGLRSHTLSM+VN++PGVLN+VTGVFARRGYNIQSLAVGHAE E
Sbjct: 290 NKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVE 349

Query: 384 GLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDV 443
           GLSRITTVVP TDESI+KL+QQL KLIDLH+VRD+THLPFAERELMLIK+AVN  ARRDV
Sbjct: 350 GLSRITTVVPGTDESINKLVQQLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDV 409

Query: 444 LDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVD 503
           LDIA+IFRAKA+DVSDHTITLELTG LDKMVALQRLLEPYGICEVARTGRVALVRESGVD
Sbjct: 410 LDIASIFRAKAIDVSDHTITLELTGALDKMVALQRLLEPYGICEVARTGRVALVRESGVD 469

Query: 504 SKYLRGYSFPL 514
           S YLRGY+FPL
Sbjct: 470 SNYLRGYAFPL 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685071|ref|NP_850172.1| ACT domain-containing small subunit of acetolactate synthase protein [Arabidopsis thaliana] gi|75249445|sp|Q93YZ7.1|ILVH2_ARATH RecName: Full=Acetolactate synthase small subunit 2, chloroplastic; AltName: Full=Acetohydroxy-acid synthase small subunit; Short=AHAS; Short=ALS; Flags: Precursor gi|16604523|gb|AAL24267.1| At2g31810/F20M17.15 [Arabidopsis thaliana] gi|21655295|gb|AAM65359.1| At2g31810/F20M17.15 [Arabidopsis thaliana] gi|330253492|gb|AEC08586.1| ACT domain-containing small subunit of acetolactate synthase protein [Arabidopsis thaliana]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/504 (71%), Positives = 411/504 (81%), Gaps = 19/504 (3%)

Query: 15  MAAIPNPTLQSPST-CFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLA 73
           MAAI   +  SPS  C    CSDS P L  S  VSF P+  S LS  +        K++ 
Sbjct: 1   MAAISVSS--SPSIRCLRSACSDSSPALVSSTRVSF-PAKISYLSGISSHRGDEMGKRME 57

Query: 74  VSARSADENITEGTFT--SRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESL 131
              RS D  I++ +F+  S +T ++ VR+HTISVFVGDESGMINRIAGVFARRGYNIESL
Sbjct: 58  GFVRSVDGKISDASFSEASSATPKSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESL 117

Query: 132 AVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADP 191
           AVGLN+DKALFTIVV GT++VLQQV+EQLQKLVNVLKVED+S+EPQVERELML+KVNA P
Sbjct: 118 AVGLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHP 177

Query: 192 KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGI 251
           + RAEI             WLVD FRA++VDI+E++LTIEVTGDPGKM+AV+RNL KF I
Sbjct: 178 ESRAEIM------------WLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQI 225

Query: 252 REIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDT-VEG 310
           REI RTGKIALRREK+GA+APFWRFSAASYPDL E   +  L  +    ++ + +T   G
Sbjct: 226 REIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQKETSAGG 285

Query: 311 DVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGY 370
           DVYPVEP     V+++LD HWG+L D+DTSGLRSHTLS+LVND PGVLNIVTGVFARRGY
Sbjct: 286 DVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGY 345

Query: 371 NIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELML 430
           NIQSLAVGHAET+G+SRITTV+PATDES+SKL+QQLYKL+D+HEV DLTHLPF+ERELML
Sbjct: 346 NIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELML 405

Query: 431 IKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVAR 490
           IK+AVN  ARRDVLDIA+IFRAKAVDVSDHTITL+LTGDLDKMVALQRLLEPYGICEVAR
Sbjct: 406 IKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVAR 465

Query: 491 TGRVALVRESGVDSKYLRGYSFPL 514
           TGRVAL RESGVDSKYLRGYSFPL
Sbjct: 466 TGRVALARESGVDSKYLRGYSFPL 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519313|ref|XP_003629945.1| Acetolactate synthase small subunit [Medicago truncatula] gi|355523967|gb|AET04421.1| Acetolactate synthase small subunit [Medicago truncatula]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/418 (81%), Positives = 375/418 (89%), Gaps = 13/418 (3%)

Query: 98  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVM 157
           VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN+D+ALFTIVV GTD+VL+QV+
Sbjct: 73  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNQDRALFTIVVSGTDRVLRQVV 132

Query: 158 EQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFR 217
           EQLQKLVNVLKVEDLS EPQVERELML+KV+ADP+ RAEI            +WLVD FR
Sbjct: 133 EQLQKLVNVLKVEDLSREPQVERELMLVKVHADPQNRAEI------------KWLVDTFR 180

Query: 218 AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFS 277
           AKIVDISE+S+TIEVTGDPGKMVAVQRN  KFGI+EIARTGKIALRREK+GASAPFWR+S
Sbjct: 181 AKIVDISEHSVTIEVTGDPGKMVAVQRNFGKFGIKEIARTGKIALRREKMGASAPFWRYS 240

Query: 278 AASYPDLNETPTIDGLVGAGHRPLLSETDT-VEGDVYPVEPSDGLTVNQVLDPHWGVLND 336
           AASYPDL     I+ LVGA +   + +TDT V GDVYP+EPSD  TVNQVLD  WG LND
Sbjct: 241 AASYPDLEGKTAINALVGAKNVNPVDKTDTPVGGDVYPIEPSDSFTVNQVLDAQWGFLND 300

Query: 337 DDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD 396
           +DTSG+RSHTLSMLVND+PGVLNIVTGVFARRGYNIQSLAVGH+E EG+SR+TTVVP TD
Sbjct: 301 EDTSGIRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSEVEGISRLTTVVPGTD 360

Query: 397 ESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVD 456
           ESISKL+QQLYKL++L EVRD+THLPFAERELMLIK+AVN  ARRDVLDIA+IFRAKAVD
Sbjct: 361 ESISKLVQQLYKLVELREVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAVD 420

Query: 457 VSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 514
           VSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGR+ LVRESGVDSK+LRGYS PL
Sbjct: 421 VSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRIGLVRESGVDSKHLRGYSLPL 478

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822923|ref|XP_002879344.1| hypothetical protein ARALYDRAFT_482103 [Arabidopsis lyrata subsp. lyrata] gi|297325183|gb|EFH55603.1| hypothetical protein ARALYDRAFT_482103 [Arabidopsis lyrata subsp. lyrata]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/505 (71%), Positives = 416/505 (82%), Gaps = 20/505 (3%)

Query: 15  MAAIPNPTLQSPS-TCFLKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPKKLA 73
           MAAI   +  SPS  C    CSDS P+L  S  VSF P+  S LS  +        K++ 
Sbjct: 1   MAAISVSS--SPSLRCLRSACSDSSPSLVSSTRVSF-PAKISYLSGQSSHRGEEMGKRME 57

Query: 74  VSARSADENITEGTFT--SRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESL 131
              RS D  I++ +++  S +T ++ VR+HTISVFVGDESGMINRIAGVFARRGYNIESL
Sbjct: 58  GFVRSVDGKISDASYSEASSTTPKSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESL 117

Query: 132 AVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADP 191
           AVGLN+DKALFTIVV GT++VLQQV+EQLQKLVNVLKVED+S+EPQVERELML+KVNA P
Sbjct: 118 AVGLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHP 177

Query: 192 KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGI 251
           +FRAEI             WLVD FRA++VDI+E++LTIEVTGDPGKM+AV+RNL KF I
Sbjct: 178 EFRAEIM------------WLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLRKFQI 225

Query: 252 REIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEG- 310
           REI RTGKIALRREK+GA+APFWRFSAASYPDL E   +  L G+    ++ + +T  G 
Sbjct: 226 REIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVSVLRGSKKGAVVPQNETTAGG 285

Query: 311 DVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGY 370
           DVYPVEP+    V++VLD HWG+L D+DTSGLRSHTLS+LVND+PGVLNIVTGVFARRGY
Sbjct: 286 DVYPVEPTFDPMVHRVLDAHWGLLTDEDTSGLRSHTLSLLVNDTPGVLNIVTGVFARRGY 345

Query: 371 NIQS-LAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELM 429
           NIQ+ LAVGHAET+G+SRITTVVPATDESISKL+QQLYKL+D+HEV DLTHLPFAERELM
Sbjct: 346 NIQAYLAVGHAETKGISRITTVVPATDESISKLVQQLYKLVDVHEVHDLTHLPFAERELM 405

Query: 430 LIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVA 489
           LIK+AVN  ARRDVLDIA+IFRAKAVDVSDHTITL+LTGDLDKMVALQRLLEPYGICEVA
Sbjct: 406 LIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVA 465

Query: 490 RTGRVALVRESGVDSKYLRGYSFPL 514
           RTGRVAL RESGVDSKYLRGYSFPL
Sbjct: 466 RTGRVALARESGVDSKYLRGYSFPL 490

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506728|gb|AFK41430.1| unknown [Lotus japonicus]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/414 (81%), Positives = 370/414 (89%), Gaps = 13/414 (3%)

Query: 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ 161
           TISVFVGDESGMINRIAGVFARRG+NIESLAVGLN+DKALFTIVV GT  VL+QV+EQLQ
Sbjct: 77  TISVFVGDESGMINRIAGVFARRGFNIESLAVGLNEDKALFTIVVSGTGTVLRQVVEQLQ 136

Query: 162 KLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIV 221
           KL NVLKVEDLSNEPQVERELMLIKV+A+P+ RAE+            +WLVDIFRAKIV
Sbjct: 137 KLANVLKVEDLSNEPQVERELMLIKVHAEPQNRAEL------------KWLVDIFRAKIV 184

Query: 222 DISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASY 281
           DISE+S+TIEVTGDPGK+VAVQRNLSKFGI+EIARTGKIALRREK+GASAPFWR+SAASY
Sbjct: 185 DISEHSVTIEVTGDPGKLVAVQRNLSKFGIKEIARTGKIALRREKMGASAPFWRYSAASY 244

Query: 282 PDLNETPTIDGLVGAGHRPLLSETDT-VEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTS 340
           PDL   P I+ LVG  +R  + + D  V GDVYP+EP D  TV QVLD HWGVLND+DTS
Sbjct: 245 PDLEGKPAINALVGVKNRTPVDKNDAPVGGDVYPIEPPDSFTVTQVLDAHWGVLNDEDTS 304

Query: 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESIS 400
           G+RSHTLSMLVND PGVLN+VTGVF+RRGYNIQSLAVGH+E EG+SR+TTVVP TDESI 
Sbjct: 305 GIRSHTLSMLVNDVPGVLNVVTGVFSRRGYNIQSLAVGHSEVEGISRLTTVVPGTDESIG 364

Query: 401 KLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDH 460
           KL+QQLYKLID HEVRDLTH+PFAERELMLIK+AVN  ARRDVLDI +IFRAKAVDVSDH
Sbjct: 365 KLLQQLYKLIDQHEVRDLTHMPFAERELMLIKIAVNAAARRDVLDIGSIFRAKAVDVSDH 424

Query: 461 TITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 514
           TITLELTGDLDKMVALQRLLEPYGICEVARTGR+ALVRESGVDSKYLRGYSFPL
Sbjct: 425 TITLELTGDLDKMVALQRLLEPYGICEVARTGRIALVRESGVDSKYLRGYSFPL 478

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792338|emb|CAN61470.1| hypothetical protein VITISV_043824 [Vitis vinifera]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/421 (80%), Positives = 374/421 (88%), Gaps = 13/421 (3%)

Query: 95  RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQ 154
           ++ VRRHTISVFVGDESGMINRIAGVFARRGYNI+SLAVGLNKDKALFTIVV GT++VLQ
Sbjct: 41  QSQVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQ 100

Query: 155 QVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVD 214
           QV+EQL KLVNVLKVED+S EP VERELMLIKVNA+P++RAEI             WLV+
Sbjct: 101 QVVEQLHKLVNVLKVEDISTEPHVERELMLIKVNANPQYRAEIM------------WLVN 148

Query: 215 IFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFW 274
           IFRAKIVDISE+S+TIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREK+G SAPFW
Sbjct: 149 IFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFW 208

Query: 275 RFSAASYPDLNETPTIDGLVGAGHRPLLSETD-TVEGDVYPVEPSDGLTVNQVLDPHWGV 333
           RFSA+SYPDL      +  V    + L SE+D +V GDVYPVEPSDG   N+VLD HWGV
Sbjct: 209 RFSASSYPDLEGEIPENTFVETRTKTLNSESDASVGGDVYPVEPSDGFLFNKVLDAHWGV 268

Query: 334 LNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP 393
           L D+DTSGLRSHTLSM+VN++PGVLN+VTGVFARRGYNIQSLAVGHAE EGLSRITTVVP
Sbjct: 269 LYDEDTSGLRSHTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVP 328

Query: 394 ATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAK 453
            TDESI+KL+QQL KLIDLH+VRD+THLPFAERELMLIK+AVN  ARRDVLDIA+IFRAK
Sbjct: 329 GTDESINKLVQQLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAK 388

Query: 454 AVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFP 513
           A+DVSDHTITLELTG LDKMVALQRLLEPYGICEVARTGRVALVRESGVDS YLRGY+FP
Sbjct: 389 AIDVSDHTITLELTGALDKMVALQRLLEPYGICEVARTGRVALVRESGVDSNYLRGYAFP 448

Query: 514 L 514
           L
Sbjct: 449 L 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495876|ref|XP_002266924.2| PREDICTED: uncharacterized protein LOC100256605 [Vitis vinifera] gi|296083398|emb|CBI23353.3| unnamed protein product [Vitis vinifera]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/431 (78%), Positives = 371/431 (86%), Gaps = 13/431 (3%)

Query: 85  EGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTI 144
           E   ++    R+ V+RHTISVFVGDESG+INRIAGVFARRGYNIESLAVGLN+DKALFTI
Sbjct: 58  EKAVSAPPIQRSKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTI 117

Query: 145 VVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLG 204
           VV GT+ VL+QV+EQL KLVNVLKV+DLS EPQVERELMLIK+NADP  RAEI       
Sbjct: 118 VVSGTETVLRQVVEQLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIM------ 171

Query: 205 VHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
                 WLVDIFRAKIVDISE+SLTIEVTGDPGKMVAVQRNLSKFGI+E+ARTGKIALRR
Sbjct: 172 ------WLVDIFRAKIVDISEHSLTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 225

Query: 265 EKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEG-DVYPVEPSDGLTV 323
           EK+G +APFWRFSAASYPDL ET  ++ LV    RPL     T  G DVYPVEP +  +V
Sbjct: 226 EKMGETAPFWRFSAASYPDLEETIPVNALVRNVKRPLNGNPSTSPGGDVYPVEPFNDFSV 285

Query: 324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE 383
           N VLDPHWG LND+D+SGLRSHTLSMLVND+PGVLNIVTGV +RR YNIQSLAVG AE E
Sbjct: 286 NPVLDPHWGALNDEDSSGLRSHTLSMLVNDTPGVLNIVTGVISRRSYNIQSLAVGPAEME 345

Query: 384 GLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDV 443
           G S ITTVVP TDESISKL+QQL KLIDLHEVRD+TH+PFAERELMLIK+AVNT ARRDV
Sbjct: 346 GRSHITTVVPGTDESISKLVQQLQKLIDLHEVRDITHMPFAERELMLIKIAVNTAARRDV 405

Query: 444 LDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVD 503
           LDIA+IFRAKAVDVSDHTITLELTGDL+KMVALQRLLEPYGICEVARTGRVALVRESGVD
Sbjct: 406 LDIASIFRAKAVDVSDHTITLELTGDLNKMVALQRLLEPYGICEVARTGRVALVRESGVD 465

Query: 504 SKYLRGYSFPL 514
           S YLRGY+ PL
Sbjct: 466 STYLRGYALPL 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2045248	491	AT2G31810 [Arabidopsis thalian	0.943	0.987	0.684	1.5e-170
TAIR|locus:2171292	477	VAT1 "VALINE-TOLERANT 1" [Arab	0.828	0.893	0.696	9.8e-151
TIGR_CMR|CHY_0518	170	CHY_0518 "acetolactate synthas	0.295	0.894	0.524	4.4e-36
TIGR_CMR|DET_0832	178	DET_0832 "acetolactate synthas	0.299	0.865	0.454	2e-31
UNIPROTKB|P65161	168	ilvH "Putative acetolactate sy	0.303	0.928	0.452	2e-31
TIGR_CMR|GSU_1910	163	GSU_1910 "acetolactate synthas	0.303	0.957	0.423	1.3e-29
TIGR_CMR|CHY_1594	164	CHY_1594 "acetolactate synthas	0.299	0.939	0.448	7.1e-29
TIGR_CMR|BA_1418	169	BA_1418 "acetolactate synthase	0.285	0.869	0.436	2e-26
TIGR_CMR|SPO_2579	186	SPO_2579 "acetolactate synthas	0.299	0.827	0.416	1.1e-24
UNIPROTKB|Q9KP91	164	Ptgds2 "Acetolactate synthase	0.297	0.932	0.397	5.1e-24

TAIR|locus:2045248 AT2G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1658 (588.7 bits), Expect = 1.5e-170, P = 1.5e-170
 Identities = 345/504 (68%), Positives = 389/504 (77%)

Query:    15 MAAIPNPTLQSPST-CFLKPCSDSLPNLGFXXXXXXXXXXXXXXXXXXXXXXHSEPKKLA 73
             MAAI      SPS  C    CSDS P L                            K++ 
Sbjct:     1 MAAIS--VSSSPSIRCLRSACSDSSPAL-VSSTRVSFPAKISYLSGISSHRGDEMGKRME 57

Query:    74 VSARSADENITEGXXXXXXXXX--XXXXXHTISVFVGDESGMINRIAGVFARRGYNIESL 131
                RS D  I++                 HTISVFVGDESGMINRIAGVFARRGYNIESL
Sbjct:    58 GFVRSVDGKISDASFSEASSATPKSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESL 117

Query:   132 AVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADP 191
             AVGLN+DKALFTIVV GT++VLQQV+EQLQKLVNVLKVED+S+EPQVERELML+KVNA P
Sbjct:   118 AVGLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHP 177

Query:   192 KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGI 251
             + RAEI             WLVD FRA++VDI+E++LTIEVTGDPGKM+AV+RNL KF I
Sbjct:   178 ESRAEIM------------WLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQI 225

Query:   252 REIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDT-VEG 310
             REI RTGKIALRREK+GA+APFWRFSAASYPDL E   +  L  +    ++ + +T   G
Sbjct:   226 REIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQKETSAGG 285

Query:   311 DVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGY 370
             DVYPVEP     V+++LD HWG+L D+DTSGLRSHTLS+LVND PGVLNIVTGVFARRGY
Sbjct:   286 DVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGY 345

Query:   371 NIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELML 430
             NIQSLAVGHAET+G+SRITTV+PATDES+SKL+QQLYKL+D+HEV DLTHLPF+ERELML
Sbjct:   346 NIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELML 405

Query:   431 IKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVAR 490
             IK+AVN  ARRDVLDIA+IFRAKAVDVSDHTITL+LTGDLDKMVALQRLLEPYGICEVAR
Sbjct:   406 IKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVAR 465

Query:   491 TGRVALVRESGVDSKYLRGYSFPL 514
             TGRVAL RESGVDSKYLRGYSFPL
Sbjct:   466 TGRVALARESGVDSKYLRGYSFPL 489

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2171292 VAT1 "VALINE-TOLERANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1471 (522.9 bits), Expect = 9.8e-151, P = 9.8e-151
 Identities = 308/442 (69%), Positives = 349/442 (78%)

Query:    74 VSARSADENITEGXXXXXXXXXXXXXXHTISVFVGDESGMINRIAGVFARRGYNIESLAV 133
             +SA S D+ IT                HTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct:    51 LSAASTDKAITTAQSVAPTACDRVRR-HTISVFVGDESGIINRIAGVFARRGYNIESLAV 109

Query:   134 GLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKF 193
             GLN+DKALFTIVV GTDKVLQQV+EQL KLVNV+KVEDLS EP VERELMLIK+NADP  
Sbjct:   110 GLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIKLNADPST 169

Query:   194 RAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIRE 253
             R+EI             WLVDIFRAKIVD SE SLTIEVTGDPGKMVA+  NL KFGI+E
Sbjct:   170 RSEIM------------WLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKE 217

Query:   254 IARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEG-DV 312
             IARTGKIALRREK+G +APFWRFSAASYP L +  + + +       L    +   G DV
Sbjct:   218 IARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNASSGGDV 277

Query:   313 YPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNI 372
             YPVEP +      VLD HWG++ D+D+SGLRSHTLS+LV + PGVLN++TG  +RRGYNI
Sbjct:   278 YPVEPYNDF--KPVLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNI 335

Query:   373 QSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIK 432
             QSLAVG AE EGLSRITTV+P TDE+I KL++QL KLIDL E++++TH+PFAERELMLIK
Sbjct:   336 QSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNITHMPFAERELMLIK 395

Query:   433 VAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTG 492
             VA +T+ARRDVLDIA +FRAKA+DVSDHTITLE+TGDL KM ALQ  LE YGICEVARTG
Sbjct:   396 VAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQLEAYGICEVARTG 455

Query:   493 RVALVRESGVDSKYLRGYSFPL 514
             RVALVRESGVDS YLRGYS PL
Sbjct:   456 RVALVRESGVDSTYLRGYSLPL 477

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0006551 "leucine metabolic process" evidence=IMP

GO:0006573 "valine metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TIGR_CMR|CHY_0518 CHY_0518 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 87/166 (52%), Positives = 120/166 (72%)

Query:   101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGL--NKDKALFTIVVYGTDKVLQQVME 158
             HT++V V +  G++ R+AG+F+RRGYNI+SLAVG   N D +  TIVV G D+VL+QV++
Sbjct:     3 HTLAVLVENNPGVLARVAGLFSRRGYNIDSLAVGRTENPDISRMTIVVEGDDRVLEQVVK 62

Query:   159 QLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA 218
             QL+KLV+V+KV+D+++E  V REL+L+KV+AD   R EI         +QI   V+IFRA
Sbjct:    63 QLRKLVDVIKVQDITSEQYVSRELLLLKVHADSNTRGEI---------MQI---VEIFRA 110

Query:   219 KIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
             +IVDI   +LTIE TGD  K+ A++  L  FGI+E+ RTGKIAL R
Sbjct:   111 RIVDIGPKTLTIEATGDEDKIEAIENALRPFGIKELVRTGKIALLR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|DET_0832 DET_0832 "acetolactate synthase, small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/154 (45%), Positives = 102/154 (66%)

Query:   345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             HT+  LV D PGVLN +  +F RRG+NI S+AVG +ET G SR+T VV   +  + ++ +
Sbjct:     6 HTIVALVEDRPGVLNRMASLFRRRGFNIDSIAVGRSETPGFSRMTIVVDGANTMVEQVRK 65

Query:   405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
             QL K++D+ +V D+T      REL LIKV      R +++ I  IFRAK VDV+  ++T+
Sbjct:    66 QLDKVVDVVKVSDITGQDIICRELALIKVKSTPANRSEIMQIVDIFRAKIVDVASDSLTV 125

Query:   465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
             E+TGD +K+ +L  LL  +GI E+ RTGR+A+ R
Sbjct:   126 EVTGDEEKVNSLYNLLRAFGIKEITRTGRIAMTR 159

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P65161 ilvH "Putative acetolactate synthase small subunit" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 77/170 (45%), Positives = 111/170 (65%)

Query:   101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN--KDKALFTIVVYGTDKVLQQVME 158
             HT+SV V D+ G++ R+A +F+RRG+NIESLAVG    KD++  TIVV   D  L+Q+ +
Sbjct:     6 HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITK 65

Query:   159 QLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA 218
             QL KL+NV+K+ +  +E  V REL LIKV AD   R+++               V++FRA
Sbjct:    66 QLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIE------------AVNLFRA 113

Query:   219 KIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLG 268
              ++D+S  SLT+E TG+ GK+ A+ R L  FGIREIA++G ++L R   G
Sbjct:   114 NVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|GSU_1910 GSU_1910 "acetolactate synthase, small subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 72/170 (42%), Positives = 112/170 (65%)

Query:   101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVME 158
             HTI+V V +E G+++R+AG+F+ RG+NI+SL+V    D+++   TIV  G D++L+Q+ +
Sbjct:     3 HTITVLVENEFGVLSRVAGLFSGRGFNIDSLSVAPTNDESISRMTIVTRGDDQILEQITK 62

Query:   159 QLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA 218
             QL KL++V+KV D ++   +ERE+ LIKV A+   RAE+           +R +VDIFR+
Sbjct:    63 QLNKLIDVIKVIDFTDGEVIEREMALIKVTAEDDARAEV-----------LR-IVDIFRS 110

Query:   219 KIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLG 268
             KI+D++  S TIE TG P K+ A+   L   G++E+ RTG  A+ R   G
Sbjct:   111 KIIDVTPRSFTIEATGTPAKIDAILELLRPLGLKELVRTGPAAIGRGAKG 160

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1594 CHY_1594 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 69/154 (44%), Positives = 102/154 (66%)

Query:   345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             HTLS+LV + PGVL  ++G+ +RR +NI+S+  G++E   ++RIT VV   D  + +++ 
Sbjct:     3 HTLSVLVLNKPGVLARISGLLSRRMFNIESITAGYSEEPNITRITIVVQGDDLVLEQVIN 62

Query:   405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
             QL KLID+ ++++L       REL LIKV      R D+++I  IFRA  VDV+  T+ +
Sbjct:    63 QLSKLIDVIKIKELPMEETIARELALIKVRALPEKRADIVNIVNIFRANIVDVNRETMVI 122

Query:   465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
             ELTGD DK+ AL  +L  +GI E+ RTG+VAL R
Sbjct:   123 ELTGDEDKINALCEVLTDHGIVEIVRTGKVALNR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|BA_1418 BA_1418 "acetolactate synthase, small subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 300 (110.7 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 65/149 (43%), Positives = 96/149 (64%)

Query:   351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES-ISKLMQQLYKL 409
             V +  GVLN +TGV  RR +NI+S++VGH E+  +SR+T VV   +E  + +L++QL+K 
Sbjct:     9 VRNQSGVLNRITGVMTRRHFNIESISVGHTESSDISRMTIVVHVENEQQVEQLIKQLHKQ 68

Query:   410 IDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGD 469
             ID+ +V D+T      REL LIKVA +  AR ++  +   FRA  +DV   +I +++TG 
Sbjct:    69 IDVLKVSDITEEAMIARELALIKVATSV-ARAELYSLIEPFRAAVIDVGKDSIVVQVTGT 127

Query:   470 LDKMVALQRLLEPYGICEVARTGRVALVR 498
              +K+ AL  LL PYG+ E+ARTG  A  R
Sbjct:   128 QEKVEALIELLRPYGLKEIARTGVTAFTR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_2579 SPO_2579 "acetolactate synthase, small subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 285 (105.4 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 65/156 (41%), Positives = 95/156 (60%)

Query:   345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEG-LSRITTVVPATDESISKLM 403
             HT+++LV + PGVL  V G+F+ RGYNI+SL V   +  G LSRIT V   T + I ++ 
Sbjct:    29 HTIALLVENEPGVLARVIGLFSGRGYNIESLTVAEVDHTGHLSRITIVTTGTPQVIEQIK 88

Query:   404 QQLYKLIDLHEVRDLT-HLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTI 462
              QL +++ + +V DLT      EREL ++KV  +   R + L +A IFRA  VD +  + 
Sbjct:    89 AQLGRIVSVRDVHDLTVEGRSVERELAMLKVVGSGDKRVEALRLADIFRANVVDSTLSSF 148

Query:   463 TLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
               E+TG  +K+ A   L+ P G+ E+ARTG  AL+R
Sbjct:   149 VFEITGAPEKIDAFADLMRPLGLAEIARTGVAALLR 184

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|Q9KP91 Ptgds2 "Acetolactate synthase III, small subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 279 (103.3 bits), Expect = 5.1e-24, P = 5.1e-24
 Identities = 62/156 (39%), Positives = 100/156 (64%)

Query:   345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE-SISKLM 403
             H +S+L+ + PG L+ V G+F++RGYNI++L V   + E LSR+  +   TDE  + ++ 
Sbjct:     3 HIISLLLENQPGALSRVVGLFSQRGYNIETLNVSPTDDETLSRLN-ITTKTDEMQLEQIQ 61

Query:   404 QQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTIT 463
             +QL+KLID+ +V+++T     ERELML+KV  +  AR +V   A IFR + VDV+    T
Sbjct:    62 KQLHKLIDVLKVQEVTECEHIERELMLVKVKASGFARAEVKRTADIFRGQIVDVTASQYT 121

Query:   464 LELTGDLDKMVA-LQRLLEPYGICEVARTGRVALVR 498
             ++L G  +K+ A ++ + E   + EVAR+G V + R
Sbjct:   122 VQLAGTSEKLDAFIEAIAEVTEVIEVARSGVVGIAR 157

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMC2	ILVH_NICPL	No assigned EC number	0.8005	0.7023	0.8040	N/A	no
Q93YZ7	ILVH2_ARATH	No assigned EC number	0.7103	0.9435	0.9877	yes	no
Q9FFF4	ILVH1_ARATH	No assigned EC number	0.7058	0.8287	0.8930	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	LOW CONFIDENCE prediction!
4th Layer	2.2.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	2e-71
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	1e-67
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	1e-67
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	7e-63
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	3e-56
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	1e-54
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	5e-54
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	2e-53
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	2e-30
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	3e-28
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	5e-28
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	1e-27
pfam13710	63	pfam13710, ACT_5, ACT domain	2e-13
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	8e-11
pfam13710	63	pfam13710, ACT_5, ACT domain	3e-10
pfam01842	66	pfam01842, ACT, ACT domain	1e-07
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	7e-07
pfam01842	66	pfam01842, ACT, ACT domain	1e-06
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	3e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	5e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	7e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	7e-05
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	1e-04
PRK13562	84	PRK13562, PRK13562, acetolactate synthase 1 regula	1e-04
pfam13291	77	pfam13291, ACT_4, ACT domain	4e-04
cd04879	71	cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include	5e-04
cd04879	71	cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include	0.003
PRK13562	84	PRK13562, PRK13562, acetolactate synthase 1 regula	0.004

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  224 bits (574), Expect = 2e-71
 Identities = 95/167 (56%), Positives = 135/167 (80%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           HTLS+LV D  GVL  + G+FARRG+NI+SLAVG AE +G+SRIT VVP  D +I +L +
Sbjct: 3   HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTK 62

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QLYKL+++ +V+D+T++P  ERELMLIK+ VN+  R ++L+IA IFRAK VD+S+ ++ L
Sbjct: 63  QLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLIL 122

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYS 511
           E+TGD  K+VA+++LLE +GI E+ARTG++AL+RES V+++YLR  S
Sbjct: 123 EVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKVNTEYLRYIS 169

Length = 174

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  214 bits (547), Expect = 1e-67
 Identities = 86/167 (51%), Positives = 115/167 (68%), Gaps = 14/167 (8%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVM 157
           RHT+SV V +E G+++R+AG+F+RRGYNIESL VG  +D  L   TIV  G ++V++Q+ 
Sbjct: 2   RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQIT 61

Query: 158 EQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFR 217
           +QL KL++VLKV DL+ E  VEREL L+KV A  + RAEI         L++    DIFR
Sbjct: 62  KQLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEI---------LRL---ADIFR 109

Query: 218 AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
           AKIVD++  SLTIEVTGD  K+ A    L  +GI+EI RTG +A+ R
Sbjct: 110 AKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGR 156

Length = 161

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  214 bits (547), Expect = 1e-67
 Identities = 80/158 (50%), Positives = 108/158 (68%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           HTLS+LV + PGVL+ V G+F+RRGYNI+SL VG  E  GLSR+T V    ++ I ++ +
Sbjct: 3   HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITK 62

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QL KLID+ +V DLT     EREL L+KV  +   R ++L +A IFRAK VDV+  ++T+
Sbjct: 63  QLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTI 122

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGV 502
           E+TGD DK+ A   LL PYGI E+ RTG VA+ R   +
Sbjct: 123 EVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEKI 160

Length = 161

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  202 bits (516), Expect = 7e-63
 Identities = 98/168 (58%), Positives = 127/168 (75%), Gaps = 14/168 (8%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVM 157
           +HT+SV V DESG++ RIAG+FARRG+NIESLAVG  + K +   T+VV G D+ ++Q+ 
Sbjct: 2   KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLT 61

Query: 158 EQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFR 217
           +QL KLVN+LKV+D++N P VERELMLIK+N + + R EI         L+I     IFR
Sbjct: 62  KQLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEI---------LEI---AQIFR 109

Query: 218 AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 265
           AK+VD+SE SL +EVTGDPGK+VA+++ L KFGI EIARTGKIAL RE
Sbjct: 110 AKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRE 157

Length = 174

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  185 bits (471), Expect = 3e-56
 Identities = 84/158 (53%), Positives = 110/158 (69%)

Query: 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKL 402
               LS+LV + PGVL+ VTG+F+RRGYNI+SL VG  ET GLSRIT VV   ++ + ++
Sbjct: 3   MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQI 62

Query: 403 MQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTI 462
           ++QL KLID+ +V DLT  P  EREL LIKV+   + R ++  I  IFRA  VDVS  ++
Sbjct: 63  IKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESL 122

Query: 463 TLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES 500
           T+ELTGD +K+ A  RLL PYGI E+ARTG VA+ R  
Sbjct: 123 TIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGP 160

Length = 163

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  180 bits (458), Expect = 1e-54
 Identities = 87/168 (51%), Positives = 112/168 (66%), Gaps = 14/168 (8%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVM 157
           RH +SV V +E G+++R+AG+F RRG+NIESL VG  +D  L   TIVV G DKVL+Q+ 
Sbjct: 1   RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQIT 60

Query: 158 EQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFR 217
           +QL KLV+V+KV DL+    VEREL L+KV+A  + R EI           IR L +IFR
Sbjct: 61  KQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEI-----------IR-LTNIFR 108

Query: 218 AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 265
            +IVD+S  S T+EVTGD  K+ A    L  FGI+E+ARTGK AL R 
Sbjct: 109 GRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRG 156

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  178 bits (455), Expect = 5e-54
 Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 14/170 (8%)

Query: 98  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQ 155
             R  +S+ V +E G+++R+ G+F+RRGYNIESL VG  +   L   TIVV G ++VL+Q
Sbjct: 2   PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQ 61

Query: 156 VMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDI 215
           +++QL KL++VLKV DL++EP VEREL LIKV+A+   R EI              + +I
Sbjct: 62  IIKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIAR------------ITEI 109

Query: 216 FRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 265
           FRA +VD+S  SLTIE+TGD  K+ A  R L  +GI EIARTG +A+ R 
Sbjct: 110 FRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRG 159

Length = 163

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  177 bits (450), Expect = 2e-53
 Identities = 75/156 (48%), Positives = 103/156 (66%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           H LS+LV + PGVL+ V G+F RRG+NI+SL VG  E   LSR+T VV   D+ + ++ +
Sbjct: 2   HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITK 61

Query: 405 QLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITL 464
           QL KL+D+ +V DLT     EREL L+KV+     R +++ +  IFR + VDVS  + T+
Sbjct: 62  QLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTV 121

Query: 465 ELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES 500
           E+TGD DK+ A   LL P+GI EVARTG+ AL R  
Sbjct: 122 EVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  112 bits (284), Expect = 2e-30
 Identities = 40/75 (53%), Positives = 50/75 (66%)

Query: 425 ERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYG 484
           EREL L+KV      R ++L IA IFRAK VDV+  + T+ELTGD +K+ A   LL P+G
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 485 ICEVARTGRVALVRE 499
           I EV RTG VA+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score =  106 bits (268), Expect = 3e-28
 Identities = 39/72 (54%), Positives = 55/72 (76%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           HTLS+LV + PGVLN ++G+FARRG+NI+SL VG  E  G+SRIT VV   D+ I ++++
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 405 QLYKLIDLHEVR 416
           QL KL+D+ +V 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  105 bits (266), Expect = 5e-28
 Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 12/87 (13%)

Query: 179 ERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGK 238
           EREL L+KV A  + RAEI         L+I    DIFRAKIVD++  S TIE+TGDP K
Sbjct: 1   ERELALVKVRATGETRAEI---------LRI---ADIFRAKIVDVTPDSYTIELTGDPEK 48

Query: 239 MVAVQRNLSKFGIREIARTGKIALRRE 265
           + A    L  FGI E+ RTG +A+ R 
Sbjct: 49  IDAFIDLLRPFGILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score =  104 bits (263), Expect = 1e-27
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGL--NKDKALFTIVVYGTDKVLQQVME 158
           HT+SV V +E G++NRI+G+FARRG+NIESL VG   +   +  TIVV G D V++Q+++
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 159 QLQKLVNVLKVE 170
           QL KLV+VLKV 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDL 412
           D PGVL  +  V  RRG+NI SL +   E +G++R+T  V   +  +  L+ QL KLID+
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 413 HEV 415
            EV
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 57.8 bits (139), Expect = 8e-11
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLM 403
           SHT S+++++ P VL  ++G+FARRGY I SL +   +T G+S +      T+   + L+
Sbjct: 2   SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLV 61

Query: 404 QQLYKLIDLHEVRDL 418
            QL KLI++ +V  L
Sbjct: 62  SQLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNV 166
           D  G++ RI  V  RRG+NI SL +   +D  +   T+ V G ++ +  ++ QL+KL++V
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 167 LKV 169
           L+V
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-KVLQQVMEQ 159
             + V V D  G++  + G  A RG NIES++   + DKA    +V   D + L+  +E 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

Query: 160 LQKLVN 165
           L+KL+ 
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVG--LNKDKALFTIVVYGTDKVLQQVME 158
           HT S+ + ++  ++ RI+G+FARRGY I SL +        +   +    T+     ++ 
Sbjct: 3   HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVS 62

Query: 159 QLQKLVNVLKVEDL 172
           QL+KL+NVL+V  L
Sbjct: 63  QLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             L + V D PG+L  V G  A RG NI+S++   +  +       VV   +E +   ++
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVD-EEDLEAALE 59

Query: 405 QLYKLID 411
            L KL+ 
Sbjct: 60  ALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 346 TLSMLVNDSPGVLNIVTGVFARRGYN---IQSLAVGHAETEGLSRITTVVPATDESISKL 402
            L + V + PGV++ V G+FARR +N   I  L +   +    SRI  +V   D+ + ++
Sbjct: 10  ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDK---SRIWLLV-NDDQRLEQM 65

Query: 403 MQQLYKLIDLHEVR 416
           + Q+ KL D+ +VR
Sbjct: 66  ISQIEKLEDVLKVR 79

Length = 96

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVG--LNKDKALFTIVVYGTDKVLQQVMEQL 160
           ++V   D  G++ ++  V A  G NI S+      +  +A   IVV G    L++++E L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59

Query: 161 Q 161
           +
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL 406
           L++   D PG+L  V  V A  G NI S+    +   G + I  VV    + + KL++ L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTD-KVLQQVMEQL 160
           I V   D  G++  I  V A    NI S+    + D  A   + +   D + L ++M +L
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKL 60

Query: 161 QKLVNVLKVE 170
           +++  V+ V 
Sbjct: 61  RQIPGVIDVR 70

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 107 VGDESGMINRIAGVFARRGYNIES---LAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL 163
           V +  G+++ + G+FARR +N+E    L +       ++ +V    D+ L+Q++ Q++KL
Sbjct: 15  VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DDQRLEQMISQIEKL 72

Query: 164 VNVLKVEDLSNEPQV 178
            +VLKV    ++P +
Sbjct: 73  EDVLKVRRNQSDPTM 87

Length = 96

>gnl|CDD|184144 PRK13562, PRK13562, acetolactate synthase 1 regulatory subunit; Provisional

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISK-LMQ 404
            L + V D    LN +T  F R  YNI +L V H+E  G+S +   V   D++    L++
Sbjct: 4   ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIK 63

Query: 405 QLYKLIDLHEVRDL 418
           +L + I++  V   
Sbjct: 64  KLKQQINVLTVECY 77

Length = 84

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK---ALFTIVVYGTDKVLQQVME 158
            + +   D  G++  I  V +    NI S+      +       T+ V   +  L +++ 
Sbjct: 6   DLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKDLEH-LARLIR 64

Query: 159 QLQKLVNVLKVE 170
           +L+K+  V+ VE
Sbjct: 65  KLRKIPGVISVE 76

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVL-QQVMEQLQKLVNVL 167
           D  G+I ++  +    G NI ++ VG  +   +   +V   D  + ++V+E+L+ L  ++
Sbjct: 8   DVPGVIGKVGTILGEHGINIAAMQVGRKEKGGI-AYMVLDVDSPVPEEVLEELKALPGII 66

Query: 168 KV 169
           +V
Sbjct: 67  RV 68

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISK-LMQQLYKLI 410
            D PGV+  V  +    G NI ++ VG    +    I  +V   D  + + ++++L  L 
Sbjct: 7   KDVPGVIGKVGTILGEHGINIAAMQVG---RKEKGGIAYMVLDVDSPVPEEVLEELKALP 63

Query: 411 DLHEVR 416
            +  VR
Sbjct: 64  GIIRVR 69

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|184144 PRK13562, PRK13562, acetolactate synthase 1 regulatory subunit; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT---DKVLQQV 156
              + + V D+   +NRI   F R  YNI++L V  ++   +  + +      D  L  +
Sbjct: 2   TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHIL 61

Query: 157 MEQLQKLVNVLKVEDL 172
           +++L++ +NVL VE  
Sbjct: 62  IKKLKQQINVLTVECY 77

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.97
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.97
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.97
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.95
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.95
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.95
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.94
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.92
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.92
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.9
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.88
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.82
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	98.99
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.81
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.8
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.73
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	98.66
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.62
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.61
PRK06349	426	homoserine dehydrogenase; Provisional	98.59
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.55
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.51
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.48
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.43
PRK06349	426	homoserine dehydrogenase; Provisional	98.4
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.39
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.36
PRK08577	136	hypothetical protein; Provisional	98.33
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.32
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.28
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.27
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.26
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.22
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.21
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.18
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.14
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	98.12
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.1
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	98.1
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.07
PRK08577	136	hypothetical protein; Provisional	98.06
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	98.06
PRK00194	90	hypothetical protein; Validated	98.06
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.0
PRK00194	90	hypothetical protein; Validated	97.99
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.99
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.97
PRK04435	147	hypothetical protein; Provisional	97.93
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.92
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.9
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.89
cd02116	60	ACT ACT domains are commonly involved in specifica	97.89
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.86
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.84
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.84
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.83
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.82
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.8
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.77
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.74
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.73
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.73
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.71
PRK07431	587	aspartate kinase; Provisional	97.7
PRK04435	147	hypothetical protein; Provisional	97.69
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.64
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.63
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.62
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.57
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.57
COG4747	142	ACT domain-containing protein [General function pr	97.53
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.51
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.48
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.48
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	97.46
cd02116	60	ACT ACT domains are commonly involved in specifica	97.42
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.41
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.37
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.35
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.34
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.33
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.33
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.32
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.29
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	97.24
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	97.21
COG4492	150	PheB ACT domain-containing protein [General functi	97.21
COG4492	150	PheB ACT domain-containing protein [General functi	97.2
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.18
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.15
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.14
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.1
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.06
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.03
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	97.02
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.0
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	96.99
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.98
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	96.96
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.93
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.91
COG4747	142	ACT domain-containing protein [General function pr	96.9
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	96.75
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.72
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.71
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.69
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.67
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	96.67
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.66
PRK05092	931	PII uridylyl-transferase; Provisional	96.59
PRK11589	190	gcvR glycine cleavage system transcriptional repre	96.57
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	96.56
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	96.54
COG1707	218	ACT domain-containing protein [General function pr	96.51
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.47
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.42
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.37
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.29
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.25
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.25
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.24
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	96.22
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.21
PRK00275	895	glnD PII uridylyl-transferase; Provisional	96.05
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.04
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.04
COG1707	218	ACT domain-containing protein [General function pr	96.03
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.03
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.92
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	95.91
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.9
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.89
PRK07334	403	threonine dehydratase; Provisional	95.87
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	95.86
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.82
COG2150	167	Predicted regulator of amino acid metabolism, cont	95.81
PRK11899	279	prephenate dehydratase; Provisional	95.71
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.68
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.63
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.57
PRK07431	587	aspartate kinase; Provisional	95.33
PRK11899	279	prephenate dehydratase; Provisional	95.32
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.31
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	95.21
PRK07334	403	threonine dehydratase; Provisional	95.19
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.12
PRK06382	406	threonine dehydratase; Provisional	95.01
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.0
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	94.97
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	94.97
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	94.95
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	94.94
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	94.94
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.87
PRK08198	404	threonine dehydratase; Provisional	94.82
PRK06382	406	threonine dehydratase; Provisional	94.7
COG2061	170	ACT-domain-containing protein, predicted allosteri	94.69
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	94.52
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	94.5
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	94.44
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.42
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.34
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	94.33
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	94.32
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.25
PRK06545	359	prephenate dehydrogenase; Validated	94.2
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	94.2
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	94.12
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	94.1
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.06
PRK06545	359	prephenate dehydrogenase; Validated	94.0
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.97
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	93.85
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.68
PRK08198	404	threonine dehydratase; Provisional	93.6
PRK12483	521	threonine dehydratase; Reviewed	93.48
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.44
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.4
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.35
PRK08818	370	prephenate dehydrogenase; Provisional	93.32
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.25
PRK11898	283	prephenate dehydratase; Provisional	93.11
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.11
PRK08818	370	prephenate dehydrogenase; Provisional	92.91
PRK12483	521	threonine dehydratase; Reviewed	92.91
COG2150	167	Predicted regulator of amino acid metabolism, cont	92.85
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.83
PRK11898	283	prephenate dehydratase; Provisional	92.61
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	92.56
PLN02550	591	threonine dehydratase	92.23
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	92.21
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	92.03
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	92.0
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	91.99
PLN02317	382	arogenate dehydratase	91.97
PRK03059	856	PII uridylyl-transferase; Provisional	91.9
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	91.68
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	91.68
PRK06635	404	aspartate kinase; Reviewed	91.66
PRK03059	856	PII uridylyl-transferase; Provisional	91.6
PRK15385	225	magnesium transport protein MgtC; Provisional	91.46
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	91.43
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	91.34
PRK05092	931	PII uridylyl-transferase; Provisional	91.27
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	91.14
PRK06635	404	aspartate kinase; Reviewed	91.0
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	91.0
COG3830	90	ACT domain-containing protein [Signal transduction	90.94
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	90.56
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	90.18
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	90.16
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	90.01
PRK03381	774	PII uridylyl-transferase; Provisional	89.98
PRK03381	774	PII uridylyl-transferase; Provisional	89.77
PLN02550	591	threonine dehydratase	89.73
PLN02317	382	arogenate dehydratase	89.58
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	89.55
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	89.55
PRK02047	91	hypothetical protein; Provisional	89.33
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	88.99
PRK08210	403	aspartate kinase I; Reviewed	88.82
PRK05007	884	PII uridylyl-transferase; Provisional	88.7
COG2061	170	ACT-domain-containing protein, predicted allosteri	88.29
PRK15385	225	magnesium transport protein MgtC; Provisional	88.25
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	88.24
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	88.01
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	87.96
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	87.81
PRK01759	854	glnD PII uridylyl-transferase; Provisional	87.65
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	87.63
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	87.26
PRK08210	403	aspartate kinase I; Reviewed	86.91
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	86.72
PRK08639	420	threonine dehydratase; Validated	86.59
PRK08526	403	threonine dehydratase; Provisional	86.12
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	86.02
PRK09084	448	aspartate kinase III; Validated	85.92
PRK05007	884	PII uridylyl-transferase; Provisional	85.78
COG3830	90	ACT domain-containing protein [Signal transduction	85.73
PRK00275	895	glnD PII uridylyl-transferase; Provisional	85.67
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	85.66
TIGR02079	409	THD1 threonine dehydratase. This model represents	85.21
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	85.09
PRK04374	869	PII uridylyl-transferase; Provisional	84.8
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	84.72
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	84.72
PRK04998	88	hypothetical protein; Provisional	84.6
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	84.37
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	84.2
PLN02551	521	aspartokinase	84.12
PRK04374	869	PII uridylyl-transferase; Provisional	84.07
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	83.79
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	83.72
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	83.42
PRK00907	92	hypothetical protein; Provisional	83.32
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	83.09
PRK14434	92	acylphosphatase; Provisional	83.01
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	82.9
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	82.26
PRK01759	854	glnD PII uridylyl-transferase; Provisional	82.16
PRK09034	454	aspartate kinase; Reviewed	81.72
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	81.67
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	81.46
PF09383	76	NIL: NIL domain; InterPro: IPR018449 This domain i	80.93
PRK09977	215	putative Mg(2+) transport ATPase; Provisional	80.88
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	80.6
PRK06291	465	aspartate kinase; Provisional	80.51
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	80.42
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	80.1

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-59  Score=459.60  Aligned_cols=290  Identities=46%  Similarity=0.615  Sum_probs=256.8

Q ss_pred             eccCCCCCCCcceEEEEEeccccccccccccceeeccCCc--------ccccCccccccccccCCCCCCCCCcccceEEE
Q 047033           31 LKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPK--------KLAVSARSADENITEGTFTSRSTNRTNVRRHT  102 (514)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  102 (514)
                      .+.|++++      .++.||+|.| +.|.-+--.+|+..+        ...|.+++|+++|.++||.++.++   .++|+
T Consensus        10 ~rr~~~ss------~~~~~~~sts-~ts~i~yk~~h~~~~rp~~~~~~~p~~~~d~avS~ii~~tP~~~~qr---~krHv   79 (309)
T KOG2663|consen   10 HRRCVASS------CRTMFPASTS-STSAIAYKQMHRHGTRPRLPTLDTPSANADSAVSSIISETPAPSRQR---VKRHV   79 (309)
T ss_pred             HHHHHhhc------cceeeeccCc-ccchhhHHHHHhcCCCCCCceecCccccchHHHHHHhhcCCcccccc---cccee
Confidence            34555554      6889999988 666433334664322        235679999999999999998877   49999


Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHh
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVER  180 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~R  180 (514)
                      |+|+|+|+|||||||+|+|++||||||||.||.||+++  +||||+.|+|+.++|.++||+||++|++|+||+++++|+|
T Consensus        80 inclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~e~~VeR  159 (309)
T KOG2663|consen   80 INCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTNEPIVER  159 (309)
T ss_pred             EEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCCChHHHH
Confidence            99999999999999999999999999999999999997  4899999999999999999999999999999999999999


Q ss_pred             heeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccce
Q 047033          181 ELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKI  260 (514)
Q Consensus       181 EL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~i  260 (514)
                      ||||+||+        +             ++.+.|+|  ||+.+.+.++|+|||++   ++...|++|+|-|++|||. 
T Consensus       160 ELmlakvs--------l-------------lg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-  212 (309)
T KOG2663|consen  160 ELMLAKVS--------L-------------LGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-  212 (309)
T ss_pred             HHHHHHHH--------h-------------hhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-
Confidence            99999996        3             78999999  99999999999999999   7889999999999999999 


Q ss_pred             eeecccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCcccccCCCcc
Q 047033          261 ALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTS  340 (514)
Q Consensus       261 Al~R~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~~~~~~  340 (514)
                      |+.|.+++..++||+|++++||++.+..+.+.+....         ..+|||||++|..++.         | +++++.+
T Consensus       213 allrlk~~~la~i~rlta~f~grvvdis~~s~i~elt---------a~p~rV~~fl~l~dp~---------g-vle~~rS  273 (309)
T KOG2663|consen  213 ALLRLKMGHLAPIWRLTAAFYGRVVDISETSCIVELT---------AKPGRVYPFLPLVDPK---------G-VLEEDRS  273 (309)
T ss_pred             HHHHHhhhccchHHHHhhhhccchhccccceeeeeec---------cCCCcccccccccCcc---------c-chhhccc
Confidence            8999999999999999999999999887777755433         5799999999977542         2 6689999


Q ss_pred             cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033          341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA  394 (514)
Q Consensus       341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g  394 (514)
                      |++.||++.++.|-|                  ++++|+.|.++++|||.+.+|
T Consensus       274 Gl~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg  309 (309)
T KOG2663|consen  274 GLRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG  309 (309)
T ss_pred             chhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence            999999999999998                  899999999999999988765

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=1.6e-53  Score=397.01  Aligned_cols=159  Identities=50%  Similarity=0.765  Sum_probs=156.7

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCch
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++++|||++++||++.++|++|||+||+||++|.|+++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCC
Q 047033          423 FAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESG  501 (514)
Q Consensus       423 ~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~  501 (514)
                      +|+|||+||||++++++|.+|+++|++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||++
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999974

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=7e-54  Score=403.69  Aligned_cols=169  Identities=56%  Similarity=0.920  Sum_probs=165.9

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCch
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      |+|+|+++++|+||+|+||+++|+||||||+||++++|+++++|||||+++|+++.++||.+||+||+||++|.++++.+
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             hhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCCc
Q 047033          423 FAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGV  502 (514)
Q Consensus       423 ~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~~  502 (514)
                      +|+|||+||||++++++|.||+++|++|||||||++++++++|+||+++|+++|+++|+||||+|++|||++||.||++.
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccccccC
Q 047033          503 DSKYLRGYS  511 (514)
Q Consensus       503 ~~~~l~~~~  511 (514)
                      ..+||+.||
T Consensus       161 ~~~~l~~~~  169 (174)
T CHL00100        161 NTEYLRYIS  169 (174)
T ss_pred             hHHHHHhhh
Confidence            889998886

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=7.6e-53  Score=390.94  Aligned_cols=157  Identities=48%  Similarity=0.757  Sum_probs=154.9

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchh
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPF  423 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~  423 (514)
                      +|||+++++|+||+|+||+++|+||||||+|++++++++++++|||++++|+++.++|+.|||+||+||++|.|++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccC
Q 047033          424 AERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES  500 (514)
Q Consensus       424 V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~  500 (514)
                      |+||||||||++++++|.+|+++|++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999983

acetohydroxyacid synthase is a synonym.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-53  Score=394.52  Aligned_cols=160  Identities=53%  Similarity=0.795  Sum_probs=157.9

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      +|+|+|+++|+|+||||+|++|||+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.|++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCC
Q 047033          422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESG  501 (514)
Q Consensus       422 ~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~  501 (514)
                      ++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|+||+++|+++|+++|+||||+|++|||.+||.||.+
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~  161 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK  161 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=3.8e-50  Score=374.34  Aligned_cols=157  Identities=54%  Similarity=0.803  Sum_probs=152.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP  176 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~  176 (514)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++  +|||++++|++.++|++|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            579999999999999999999999999999999999998776  499999999999999999999999999999999999


Q ss_pred             hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 047033          177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIAR  256 (514)
Q Consensus       177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaR  256 (514)
                      .|+|||+|+||++++++|.|+            +++++.|||||||++++++++|+||+++||++|+++|+||||+|++|
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i------------~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~R  148 (161)
T PRK11895         81 HVERELALVKVRASGENRAEI------------LRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVR  148 (161)
T ss_pred             hhheEEEEEEEECCcccHHHH------------HHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEc
Confidence            999999999999999999999            99999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecccc
Q 047033          257 TGKIALRREKL  267 (514)
Q Consensus       257 TG~iAl~R~~~  267 (514)
                      ||.+||.||+.
T Consensus       149 TG~~al~r~~~  159 (161)
T PRK11895        149 TGVVAIGRGEK  159 (161)
T ss_pred             cCceeEEcCCC
Confidence            99999999963

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=9.2e-50  Score=370.33  Aligned_cols=155  Identities=54%  Similarity=0.794  Sum_probs=150.9

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ  177 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~  177 (514)
                      +|+|+++++|+||+|+||+++|+||||||+||+++++++++  +|||+++++++.++|+.|||+||+||++|.++++++.
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            59999999999999999999999999999999999998776  4999999999999999999999999999999999999


Q ss_pred             HHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeec
Q 047033          178 VERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIART  257 (514)
Q Consensus       178 V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRT  257 (514)
                      |+|||||+||++++++|.|+            +++++.|||||||++++++++|+||+++||++|+++|+||||+|++||
T Consensus        81 v~rEl~LiKv~~~~~~r~~i------------~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~Rt  148 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEI------------IRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVART  148 (157)
T ss_pred             eeeEEEEEEEECCccCHHHH------------HHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcc
Confidence            99999999999999999999            999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeccc
Q 047033          258 GKIALRREK  266 (514)
Q Consensus       258 G~iAl~R~~  266 (514)
                      |.+||.||.
T Consensus       149 G~va~~r~~  157 (157)
T TIGR00119       149 GKTALSRGP  157 (157)
T ss_pred             CeEEEecCC
Confidence            999999983

acetohydroxyacid synthase is a synonym.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-50  Score=373.28  Aligned_cols=159  Identities=51%  Similarity=0.767  Sum_probs=154.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNE  175 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~  175 (514)
                      +|+|+++++|+|+||+|+||+|+|+||||||+||+|++||+++  +|||++.||+..+||++|||+||+||++|.+++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            5899999999999999999999999999999999999999986  69999999999999999999999999999999999


Q ss_pred             hhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEe
Q 047033          176 PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIA  255 (514)
Q Consensus       176 ~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEva  255 (514)
                      ++++|||+|+||++++..|.|+            .+++++|||+|+|++++++++|+||+++|+++|++.|+||||+|++
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei------------~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~  149 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEI------------ARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIA  149 (163)
T ss_pred             chhheeeEEEEEecCccchHHH------------HHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEE
Confidence            9999999999999988889999            9999999999999999999999999999999999999999999999


Q ss_pred             eccceeeeccccc
Q 047033          256 RTGKIALRREKLG  268 (514)
Q Consensus       256 RTG~iAl~R~~~~  268 (514)
                      |||.+||.||+..
T Consensus       150 rtG~~~~~Rg~~~  162 (163)
T COG0440         150 RTGVVAMSRGPKK  162 (163)
T ss_pred             eccceeecccCCC
Confidence            9999999999763

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=8.4e-50  Score=376.05  Aligned_cols=168  Identities=58%  Similarity=0.832  Sum_probs=159.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP  176 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~  176 (514)
                      |+|+|+++++|+||+|+||+++|+||||||+||++++|++++  +|||++.++++.++|+.+||+||+||++|.++++++
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            589999999999999999999999999999999999999886  499999999888999999999999999999999999


Q ss_pred             hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 047033          177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIAR  256 (514)
Q Consensus       177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaR  256 (514)
                      .|+|||||+||++++++|.|+            +++++.|||||||++++++++|+||+++||++|+++|+||||+|++|
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei------------~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~R  148 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEI------------LEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIAR  148 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHH------------HHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEc
Confidence            999999999999999999999            99999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecccccCCCccccccc
Q 047033          257 TGKIALRREKLGASAPFWRFSA  278 (514)
Q Consensus       257 TG~iAl~R~~~~~~~~~~~~~~  278 (514)
                      ||.+||+|++.....++-.+|+
T Consensus       149 tG~val~r~~~~~~~~l~~~~~  170 (174)
T CHL00100        149 TGKIALIRESKVNTEYLRYISE  170 (174)
T ss_pred             cCceeEecCccchHHHHHhhhh
Confidence            9999999998776665555443

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-35  Score=291.23  Aligned_cols=161  Identities=34%  Similarity=0.529  Sum_probs=149.8

Q ss_pred             cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCC
Q 047033          341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTH  420 (514)
Q Consensus       341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~  420 (514)
                      ..++|+|+++|.|+|||||||+|+|+||||||+||.||-||+++++|||||+.|+|+.++|.++||+||++|++|.|+|.
T Consensus        74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~  153 (309)
T KOG2663|consen   74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTN  153 (309)
T ss_pred             cccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhheeeEEEEEecCc-------------------------------------------------ccHHHHHHHHHhcC
Q 047033          421 LPFAERELMLIKVAVNT-------------------------------------------------TARRDVLDIATIFR  451 (514)
Q Consensus       421 ~~~V~REL~LIKV~~~~-------------------------------------------------~~R~eI~~la~iFr  451 (514)
                      +++|+|||||+||+.-.                                                 .+-..|.++...|.
T Consensus       154 e~~VeRELmlakvsllg~d~Fravd~~eh~~t~e~tadsgal~tnlkkkq~~e~v~takallrlk~~~la~i~rlta~f~  233 (309)
T KOG2663|consen  154 EPIVERELMLAKVSLLGVDYFRAVDLHEHTLTIEVTADSGALVTNLKKKQIHEIVRTAKALLRLKMGHLAPIWRLTAAFY  233 (309)
T ss_pred             ChHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhccCchHHHhhHHHhccchhhccHHHHHHHhhhccchHHHHhhhhc
Confidence            99999999999996421                                                 00112667888999


Q ss_pred             cEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCC
Q 047033          452 AKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESG  501 (514)
Q Consensus       452 akIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~  501 (514)
                      ++++|++++++++|+|..++.+..|+.+++|||++|-.|||..|+.|...
T Consensus       234 grvvdis~~s~i~elta~p~rV~~fl~l~dp~gvle~~rSGl~a~trspl  283 (309)
T KOG2663|consen  234 GRVVDISETSCIVELTAKPGRVYPFLPLVDPKGVLEEDRSGLRAHTRSPL  283 (309)
T ss_pred             cchhccccceeeeeeccCCCcccccccccCcccchhhcccchhhcccccc
Confidence            99999999999999999999999999999999999999999999999854

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.97  E-value=9.2e-32  Score=227.30  Aligned_cols=80  Identities=33%  Similarity=0.477  Sum_probs=76.8

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEE--ecC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVR--DLT  419 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~--dlt  419 (514)
                      |+||||++|+|+||||+||+|+|+||||||+||+||+||++++||||||++ ||++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            589999999999999999999999999999999999999999999999998 99999999999999999999999  777


Q ss_pred             Cch
Q 047033          420 HLP  422 (514)
Q Consensus       420 ~~~  422 (514)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            643

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.97  E-value=8.9e-32  Score=232.35  Aligned_cols=89  Identities=27%  Similarity=0.415  Sum_probs=84.5

Q ss_pred             ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      ..+.+||||++|+|+||||+||+|||+||||||+||+||+||++++|||||++. +++.++||+|||+||+||++|.|++
T Consensus         4 ~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~   82 (96)
T PRK08178          4 TTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQ   82 (96)
T ss_pred             CCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECC
Confidence            346689999999999999999999999999999999999999999999999999 5789999999999999999999999


Q ss_pred             CchhhheeeE
Q 047033          420 HLPFAERELM  429 (514)
Q Consensus       420 ~~~~V~REL~  429 (514)
                      +++.+++|+.
T Consensus        83 ~~~~v~~e~~   92 (96)
T PRK08178         83 SDPTMFNKIA   92 (96)
T ss_pred             CchhHHHHHH
Confidence            9999999873

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.97  E-value=2.7e-30  Score=214.86  Aligned_cols=76  Identities=38%  Similarity=0.649  Sum_probs=74.5

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      |+|+|+++|+|+||||+||+++|+||||||+||+||+||++++|||||++.|+++.++||+|||+||+||++|.|+
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999985

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.95  E-value=1.1e-28  Score=213.33  Aligned_cols=86  Identities=26%  Similarity=0.457  Sum_probs=81.2

Q ss_pred             cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCC
Q 047033           97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN  174 (514)
Q Consensus        97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~  174 (514)
                      .+.+|+|+++|+|+||||+||+|+|+||||||+||+||+|++++  +|||++. +++.++|++|||+||+||++|.++++
T Consensus         5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~   83 (96)
T PRK08178          5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQS   83 (96)
T ss_pred             CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCC
Confidence            36789999999999999999999999999999999999999986  5999998 57899999999999999999999999


Q ss_pred             hhhHHhhee
Q 047033          175 EPQVERELM  183 (514)
Q Consensus       175 ~~~V~REL~  183 (514)
                      ++.|++|+.
T Consensus        84 ~~~v~~e~~   92 (96)
T PRK08178         84 DPTMFNKIA   92 (96)
T ss_pred             chhHHHHHH
Confidence            999999974

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.95  E-value=2.4e-28  Score=203.13  Aligned_cols=75  Identities=27%  Similarity=0.369  Sum_probs=72.7

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD  417 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d  417 (514)
                      ||+|+|+++|+|+||||+||+|||+||||||+||+||+|+++++||||+++. +++.++||.|||+||+||++|..
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence            6899999999999999999999999999999999999999999999999995 89999999999999999999974

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.95  E-value=2.5e-28  Score=206.48  Aligned_cols=77  Identities=31%  Similarity=0.490  Sum_probs=73.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEe-cChHHHHHHHHHHhcCcceeeEe--ecC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE--DLS  173 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~-gde~~ieQI~kQLeKLvdVikV~--dlt  173 (514)
                      |+|+|+++|+|+||||+||+|+|+||||||+||+||+||+++  +|||+++ ||++.++|++|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            479999999999999999999999999999999999999997  5999998 99999999999999999999999  776


Q ss_pred             Ch
Q 047033          174 NE  175 (514)
Q Consensus       174 ~~  175 (514)
                      +.
T Consensus        81 ~~   82 (84)
T PRK13562         81 DN   82 (84)
T ss_pred             cc
Confidence            64

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.94  E-value=5.6e-27  Score=195.03  Aligned_cols=74  Identities=34%  Similarity=0.570  Sum_probs=71.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      |+|+|+++|+|+||||+||+|+|+||||||+||+||+||+++  +|||++.|+++.++|++|||+||+||++|.++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            579999999999999999999999999999999999999987  59999999999999999999999999999985

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.92  E-value=1.9e-25  Score=184.57  Aligned_cols=75  Identities=53%  Similarity=0.824  Sum_probs=70.8

Q ss_pred             heeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeecc
Q 047033          425 ERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRE  499 (514)
Q Consensus       425 ~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg  499 (514)
                      +||||||||+++.++|.+|+++|+.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            699999999998899999999999999999999999999999999999999999999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.92  E-value=4.1e-25  Score=183.83  Aligned_cols=73  Identities=23%  Similarity=0.403  Sum_probs=69.1

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVED  171 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~d  171 (514)
                      ||+|+|+++|+|+||||+||+|+|+||||||+||++|+|++++  +|||++ ++++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence            5789999999999999999999999999999999999999986  599999 589999999999999999999974

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.90  E-value=1.7e-24  Score=178.94  Aligned_cols=75  Identities=56%  Similarity=0.798  Sum_probs=70.4

Q ss_pred             HhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeecc
Q 047033          179 ERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTG  258 (514)
Q Consensus       179 ~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG  258 (514)
                      +|||||+||++++++|.+|            +++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||
T Consensus         1 erEl~LiKV~~~~~~r~ei------------~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG   68 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEI------------LQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTG   68 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHH------------HHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEE
T ss_pred             CeEEEEEEEECCccCHHHH------------HHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccc
Confidence            6999999999988999999            9999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecc
Q 047033          259 KIALRRE  265 (514)
Q Consensus       259 ~iAl~R~  265 (514)
                      .+||.||
T Consensus        69 ~vAi~Rg   75 (75)
T PF10369_consen   69 RVAIERG   75 (75)
T ss_dssp             EEEEEST
T ss_pred             ceeEeCC
Confidence            9999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.88  E-value=8.8e-23  Score=163.33  Aligned_cols=63  Identities=57%  Similarity=0.900  Sum_probs=59.2

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV  415 (514)
                      |+||+|+||+++|+||||||+||+|+++++++++||||++.|+++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999999999999999999999999999999999987

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.82  E-value=2.1e-20  Score=149.61  Aligned_cols=61  Identities=52%  Similarity=0.931  Sum_probs=56.0

Q ss_pred             CchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033          109 DESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus       109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV  169 (514)
                      |+||+|+||+|+|+||||||+||+|+++++++.  |||+++|+++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999975  9999999999999999999999999987

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=98.99  E-value=1.2e-09  Score=92.46  Aligned_cols=76  Identities=26%  Similarity=0.322  Sum_probs=72.2

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      ||.|.+.+.+..+||.|.||.++-++|||-+.+++.....+.+.-.|.++|++ ++.++.|..||+||.||..|+-.
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~   76 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEIT   76 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEe
Confidence            78999999999999999999999999999999999999999999999999995 68999999999999999998754

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.81  E-value=4e-08  Score=75.69  Aligned_cols=71  Identities=55%  Similarity=0.911  Sum_probs=63.6

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV  415 (514)
                      |+|.+.+.|+||+|.+|+.+|+..|+||.++...+....+..++.+.+......+++++++|+++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            79999999999999999999999999999999876535677888888875448899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.80  E-value=1.8e-08  Score=77.51  Aligned_cols=66  Identities=27%  Similarity=0.459  Sum_probs=58.7

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCcc
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLID  411 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLid  411 (514)
                      |+|.+.+.|+||+|.+|+++|+++|+||.++....+.+. ...+.++...+....+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            789999999999999999999999999999999998876 556666666788999999999998754

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.73  E-value=5.7e-08  Score=74.75  Aligned_cols=65  Identities=26%  Similarity=0.492  Sum_probs=56.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHHhcCcc
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQLQKLVN  165 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQLeKLvd  165 (514)
                      |+|.+.+.|+||+|.+|+++|+++|+||.++......+. ..+.++...+....+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            689999999999999999999999999999999998874 34556666778889999999988753

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=98.66  E-value=6.9e-08  Score=81.90  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=68.3

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      ||+|.+.+.+..+||.|.||.++-++|||-+-+++.....|.+.  +.++|++ ++.++-+..||+||.||..|+-.-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence            78999999999999999999999999999999999998888776  7788877 558999999999999999998653

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.62  E-value=4.7e-07  Score=73.95  Aligned_cols=73  Identities=26%  Similarity=0.442  Sum_probs=63.4

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVR  416 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~  416 (514)
                      .-+|.|.+.|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .+-+.+++++++|+++-+|.+|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            57899999999999999999999999999999999986677888888876 58889999999999999999986

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.61  E-value=1.9e-07  Score=71.46  Aligned_cols=71  Identities=25%  Similarity=0.437  Sum_probs=63.0

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      +|.+.+.|+||+|++|+.+|+.+|+||.++.+...+..+...+++.++..  ..++++++|+++.+|.+|..+
T Consensus         1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            36789999999999999999999999999999877656888999998653  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.59  E-value=1.3e-07  Score=100.19  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=67.2

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      +.+|+|++.++|+||||++|+++|+++|+||+|+...+++. +.++++++++ .++..++++++||+||.+|.+.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            45799999999999999999999999999999999988755 8899999998 8899999999999999998654

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.55  E-value=5.1e-07  Score=69.53  Aligned_cols=69  Identities=59%  Similarity=0.946  Sum_probs=58.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdVikV  169 (514)
                      |+|.+.+.|+||+|.+++.+|+..|+||+++........  ..+.+.+......+++++++|.++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            789999999999999999999999999999998764222  346666653338899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.51  E-value=4.8e-07  Score=70.86  Aligned_cols=71  Identities=24%  Similarity=0.411  Sum_probs=62.4

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      |.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++++++. -+...+++++++|+++.+|.++
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~   72 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV   72 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence            5789999999999999999999999999999886655558888888876 5788899999999999888765

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.48  E-value=6.3e-07  Score=68.99  Aligned_cols=71  Identities=24%  Similarity=0.346  Sum_probs=62.6

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      ||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.+.+++.  .+++++++|+++-+|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            57899999999999999999999999999998775556778888888865  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.43  E-value=1.2e-06  Score=69.42  Aligned_cols=46  Identities=20%  Similarity=0.514  Sum_probs=40.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEE
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVV  146 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv  146 (514)
                      +.|++.++|+||+|++|+.+|+++|+||+++.+.++++++.+.+.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence            3678899999999999999999999999999998887765566655

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.40  E-value=8.4e-07  Score=94.21  Aligned_cols=74  Identities=24%  Similarity=0.368  Sum_probs=65.2

Q ss_pred             ccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033           96 TNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        96 ~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV  169 (514)
                      ....+|.|++.++|+||||++|+++|+++|+||+|+...++++ .+.++|+++ .++..++++++||+||.+|.+.
T Consensus       344 ~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        344 EIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             HhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            3456899999999999999999999999999999999987654 346888887 7899999999999999998664

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.39  E-value=1.7e-06  Score=68.62  Aligned_cols=45  Identities=29%  Similarity=0.578  Sum_probs=38.9

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEE
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRIT  389 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiT  389 (514)
                      +.|++.++|+||+|++|+.+|+++|+||+++.+.+.++..+.|+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence            468889999999999999999999999999999888775554543

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.36  E-value=4.5e-06  Score=68.17  Aligned_cols=72  Identities=28%  Similarity=0.408  Sum_probs=58.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~  170 (514)
                      -...|.+...|+||+|+.|+.+++.-|.||.++.+.... +. ..+++.+. .+.+.+++++++|+++-+|.+|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            456899999999999999999999999999999999875 32 34555544 56789999999999999999986

>PRK08577 hypothetical protein; Provisional

Probab=98.33  E-value=4.6e-06  Score=75.61  Aligned_cols=76  Identities=26%  Similarity=0.426  Sum_probs=66.4

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEec
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      ..++|.+.+.|+||+|+.|+++|+..|+||.++.+......+..++++++.  ..+..++++.++|+++-+|.+|...
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            368999999999999999999999999999999988776677787877766  3346899999999999999999753

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.32  E-value=2.5e-06  Score=65.26  Aligned_cols=68  Identities=24%  Similarity=0.459  Sum_probs=58.0

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +.+.+.|+||+|++++.+|+.+|+||.++.+...+  +...+++.++..  .+++++++|+++-+|.+|..+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            67899999999999999999999999999998765  334477777443  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.28  E-value=7e-06  Score=63.50  Aligned_cols=70  Identities=34%  Similarity=0.420  Sum_probs=61.6

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD  417 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d  417 (514)
                      .|.+.+.|+||+|++++.+|+..|+||.++...+. +.+..++++.+++. +.++.+.++|++.-+|.+|.-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            46789999999999999999999999999988654 35778899999876 788999999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.27  E-value=8.5e-06  Score=64.93  Aligned_cols=72  Identities=25%  Similarity=0.374  Sum_probs=59.7

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CCh-HHHHHHHHHHhcCccEEEEEec
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATD-ESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde-~~ieQI~kQL~KLidVikV~dl  418 (514)
                      +|.+.+.|+||+|++|++.+++.|.||..++... ...+..++.+++. .+. ..+++++++|+++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            5889999999999999999999999999998743 2245666776665 344 4899999999999999999753

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.26  E-value=4e-06  Score=65.64  Aligned_cols=70  Identities=24%  Similarity=0.374  Sum_probs=58.5

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC--CcEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD--KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted--~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~  170 (514)
                      |.|.+.+.|+||+|++++.+|++.|.||+++...+..+  ...+.+++. .+...+++++++|+++-+|.++.
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~   73 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP   73 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence            57899999999999999999999999999998865543  234666655 57888999999999998887653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.22  E-value=4.1e-06  Score=64.44  Aligned_cols=69  Identities=29%  Similarity=0.427  Sum_probs=57.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +|.+.+.|+||+|.+++.+|+..|+||.++.+.+..  +.+.+.|.+++.  .+++++++|+++-.|.+|..|
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            478899999999999999999999999999987643  234466666655  788999999999999998754

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.21  E-value=2.7e-06  Score=66.58  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      +-+..+|+||+|++|+.++++.|+||.++....+.  +...+.+.++..  .+++++++|.++.+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876543  566666666654  888999999999999999754

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.18  E-value=5.5e-06  Score=65.25  Aligned_cols=71  Identities=23%  Similarity=0.368  Sum_probs=60.8

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      +.+.+.|+||+|++|+.+|+++|.||.++.+.+.+..+.+.+.+.++++  ....+.+.|.++.+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence            4568999999999999999999999999998887677788888888863  3468889999999999887653

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.14  E-value=2.9e-06  Score=66.45  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=56.3

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +-+...|+||+|++|+.++++.|+||.++....+...+.+.+.++..  .+++++++|.++-+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876554444566666554  788999999999999998753

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=98.12  E-value=2e-05  Score=62.83  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEE
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHE  414 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVik  414 (514)
                      +|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+++. .+.+.++++++.|+++-+|.-
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~   69 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV   69 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence            47899999999999999999999999999998654 367888888887 578899999999999999874

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.10  E-value=2.1e-05  Score=60.81  Aligned_cols=69  Identities=26%  Similarity=0.393  Sum_probs=58.2

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED  171 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d  171 (514)
                      .|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. +.++.++++|++.-+|.+|.-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            467889999999999999999999999999876543 334577778776 688899999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=98.10  E-value=2.7e-05  Score=63.18  Aligned_cols=70  Identities=13%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      .|.|...|++|+|+.|+.+++..|+||.++.+...   +.-++++.+. +-+.+++++++|+++..|.+|.-+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999999653   4455666666 6678999999999999999998654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.07  E-value=2.2e-05  Score=62.53  Aligned_cols=71  Identities=18%  Similarity=0.310  Sum_probs=56.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEE--EEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALF--TIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~--TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      .|.+...|+||+|++|+.++++.|.||+.++.....+ ...+  |+.+...+..+++++++|.++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            5789999999999999999999999999998743221 1234  444444445999999999999999999753

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=98.06  E-value=2.9e-05  Score=70.41  Aligned_cols=74  Identities=28%  Similarity=0.363  Sum_probs=61.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEe--cChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +.+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+  .++++++  ..+..+++++++|+++-+|.+|...
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            588999999999999999999999999999999987654333  4555544  4346899999999999999999753

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=98.06  E-value=4.5e-05  Score=56.37  Aligned_cols=69  Identities=26%  Similarity=0.428  Sum_probs=59.1

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEE
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVR  416 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~  416 (514)
                      |.+.+.|+||.+++++.+|+..++||.++...... .+...+.+.+. .+...++.+.++|.++..|.+|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 46677777765 46778999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK00194 hypothetical protein; Validated

Probab=98.06  E-value=4.6e-06  Score=69.64  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=55.5

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC--hHHHHHHHHHHhcCccEEEEE
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT--DESISKLMQQLYKLIDLHEVR  416 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd--e~~ieQI~kQL~KLidVikV~  416 (514)
                      |++|++++.-.|+||++++|+++|+.+|.||..+.....  .+.--+.++++.+  +..++.+.+.|+++-+...+.
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            568999999999999999999999999999999987764  3444454455443  234677777777776665544

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.00  E-value=1.7e-05  Score=62.37  Aligned_cols=69  Identities=23%  Similarity=0.414  Sum_probs=55.1

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      +.+.+.|+||++++|+++|+++|.||.++.+.+++..+  .+.+.++++.  ...+.+.|.++-+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEEEEe
Confidence            45689999999999999999999999999987764333  4666666633  458888888889998887653

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK00194 hypothetical protein; Validated

Probab=97.99  E-value=1e-05  Score=67.52  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=56.2

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHHhcCcceeeEe
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQLeKLvdVikV~  170 (514)
                      |+++++++.-.|+||++++|+++|+.+|.||..+......+.-.++++++...  ..++.+.+.|+++-+...+.
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            45899999999999999999999999999999998775332223555666432  34678888888777766554

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.99  E-value=1.7e-05  Score=60.59  Aligned_cols=46  Identities=20%  Similarity=0.525  Sum_probs=39.7

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEec
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYG  148 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~g  148 (514)
                      |++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+.+.+.++.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46789999999999999999999999999999887 44567777755

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.97  E-value=3.7e-05  Score=60.82  Aligned_cols=62  Identities=24%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      .+++.+.|+||.|.+++.+|+++|+||+++...+....+...+.+.+++++.  +++.+.|.+.
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~~   64 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRRA   64 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHHC
Confidence            5788999999999999999999999999999888767788889999986443  4666666653

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=97.93  E-value=0.0001  Score=68.40  Aligned_cols=76  Identities=26%  Similarity=0.390  Sum_probs=63.9

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEecC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      +.-+|.+.+.|+||+|++|..++++.|.||.+++... ...+...++++++  +.+..+++|+.+|+++-.|.+|+-+.
T Consensus        68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            4679999999999999999999999999999998753 2346677777776  33458999999999999999998654

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.92  E-value=2.9e-05  Score=59.28  Aligned_cols=47  Identities=26%  Similarity=0.499  Sum_probs=39.7

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA  394 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g  394 (514)
                      |++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+..-+.+.++.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence            46889999999999999999999999999999986 455556666653

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.90  E-value=9e-05  Score=60.11  Aligned_cols=70  Identities=10%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      .|.+...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +...+++++++|.++-.|.+|..+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            57899999999999999999999999999998653 2212444443 5677999999999999999998653

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.89  E-value=8.6e-05  Score=60.04  Aligned_cols=68  Identities=18%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEE
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLH  413 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVi  413 (514)
                      ++.+.+.|+||.|++|..+|+++|.||.+|..-|... ++-..+.|-+.|  ++..++++++.|.+..+-+
T Consensus         1 sl~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~   71 (75)
T cd04880           1 SLVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV   71 (75)
T ss_pred             CEEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence            3567789999999999999999999999998888765 566677777888  5788999999999865533

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.89  E-value=7.1e-05  Score=52.37  Aligned_cols=59  Identities=32%  Similarity=0.452  Sum_probs=50.3

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHH
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL  406 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL  406 (514)
                      |++...|+||++.++++.|+++|+||.++........+..++++.+...+ .++.++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46788999999999999999999999999998776667788888888654 777777776

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.86  E-value=6.4e-05  Score=57.93  Aligned_cols=63  Identities=24%  Similarity=0.321  Sum_probs=52.5

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEeCCh-HHHHHHHHHHhcC
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVPATD-ESISKLMQQLYKL  409 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~gde-~~ieQI~kQL~KL  409 (514)
                      |.+.+.|+||.|.+|+.+++..|.||.++...+..   ..+...+.+.+...+ +.++++++.|++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            35788999999999999999999999999987754   357777888777544 7789999998774

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.84  E-value=0.00013  Score=53.79  Aligned_cols=68  Identities=24%  Similarity=0.315  Sum_probs=56.1

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~  170 (514)
                      |.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.++++|.++-.|.+|+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 2234566555 45678999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.84  E-value=0.00015  Score=59.54  Aligned_cols=67  Identities=21%  Similarity=0.337  Sum_probs=53.8

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC--hHHHHHHHHHHhcCcc
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT--DESISKLMQQLYKLID  411 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd--e~~ieQI~kQL~KLid  411 (514)
                      .+|.+.+.|+||.|.+|..+|+++|+||.++..-|..+ .....+-+-++|.  +..++++.++|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            46788889999999999999999999999999888754 3444444555665  7788999999988544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.83  E-value=0.00017  Score=57.49  Aligned_cols=68  Identities=15%  Similarity=0.267  Sum_probs=56.2

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV  169 (514)
                      +|.+.+.|+||.|++|+.+++..|.||.++......+. ..+.+++. .+.+.++++++.|+++-+|.--
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~   70 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL   70 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence            47899999999999999999999999999998765422 23666665 5678899999999999998753

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.82  E-value=5.8e-05  Score=61.23  Aligned_cols=63  Identities=24%  Similarity=0.381  Sum_probs=50.0

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC----CCCeeEEEEEEeCChH-HHHHHHHHHhcC
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE----TEGLSRITTVVPATDE-SISKLMQQLYKL  409 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te----~~~iSRiTIVV~gde~-~ieQI~kQL~KL  409 (514)
                      +++...|+||++++|+.+|+++|.||.++.....+    ..+.-.|++.+...+. .+.++.+.|+++
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l   69 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL   69 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999986555    3366667777765433 577777777665

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.80  E-value=9e-05  Score=58.49  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      |.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.++++.+ ...+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence            689999999999999999999999999999987775322233456677643 366677776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.77  E-value=0.00015  Score=58.15  Aligned_cols=67  Identities=19%  Similarity=0.354  Sum_probs=50.2

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEE
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPA-TDESISKLMQQLYKLIDLH  413 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVi  413 (514)
                      +++.+.|+||.|.+++.++++.|.||.|+...+.. +.+...+.+.+.+ ++..+++|.+.|.+-.+|.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~~   70 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTVV   70 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccEE
Confidence            68899999999999999999999999999887752 3344444444432 3335888988887764443

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.74  E-value=3e-05  Score=64.83  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHhcCccEEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLYKLIDLHE  414 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~KLidVik  414 (514)
                      |+.+++...|+||++++|+++|+.+|.||..+.....  .+.-.|.+++.+..  ..++++.+.|++|-+-..
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~   71 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELG   71 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999987763  34555666666443  458888888887765443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.73  E-value=0.00013  Score=57.63  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhc
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      |.+++.+.|+||.|.+++++|++.|+||+++......  ..+.+.++++.++ ..+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence            6789999999999999999999999999999877753  2456777777443 56677776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.73  E-value=0.00022  Score=58.50  Aligned_cols=65  Identities=25%  Similarity=0.430  Sum_probs=52.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEE--EEEecC--hHHHHHHHHHHhcCcc
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFT--IVVYGT--DKVLQQVMEQLQKLVN  165 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~T--IVv~gd--e~~ieQI~kQLeKLvd  165 (514)
                      ..+.+.+.|+||.|.++..+|++.|+||.|+..-|..+. ..++  +-+++.  +..++++.++|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            367788899999999999999999999999998887653 3344  445554  6788899999988544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.71  E-value=5.3e-05  Score=63.39  Aligned_cols=71  Identities=18%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHHhcCcceeeEe
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQLeKLvdVikV~  170 (514)
                      ++.+++.-.|+||++++|+++|+++|.||..+........-.|+++++...  ..++++.+.|+++-+-..++
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~   73 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVK   73 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            478999999999999999999999999999998776322112666776543  45888888888877654443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.70  E-value=0.011  Score=65.37  Aligned_cols=291  Identities=14%  Similarity=0.124  Sum_probs=174.0

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeE
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLI  185 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~Li  185 (514)
                      +.+++|+++||.+.|.+.|+||+.++.+..+.. .-+.++++.++  +++..+.|+++.+=+..    .+-.+.+++++|
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~I  351 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAKL  351 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEEE
Confidence            567899999999999999999999987765432 33666665432  44444444443210000    122345678899


Q ss_pred             EEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 047033          186 KVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR  264 (514)
Q Consensus       186 KV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~iAl~R  264 (514)
                      .|--.. ..+..+.        -.++......+-+|.-++....-|-+.=+.+..+..++.|..--.+|.          
T Consensus       352 svvG~gm~~~~gi~--------~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~----------  413 (587)
T PRK07431        352 SISGAGMMGRPGIA--------AKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELED----------  413 (587)
T ss_pred             EEECCCcccCccHH--------HHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhccCC----------
Confidence            886543 2333330        123666677777888777665566665566667777777654222221          


Q ss_pred             ccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCcccccCCCccccee
Q 047033          265 EKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRS  344 (514)
Q Consensus       265 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  344 (514)
                      .......-.|+.                               .+.-|-.+.-.+                     .+..
T Consensus       414 ~~~~~~~~~~~~-------------------------------~~~~v~gIa~~~---------------------~~~~  441 (587)
T PRK07431        414 SQIEINPTASGQ-------------------------------DEPEVRGVALDR---------------------NQAQ  441 (587)
T ss_pred             cccccCccccCC-------------------------------CCCcEEEEEccC---------------------CEEE
Confidence            001011111110                               111122222112                     1112


Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeec-CCCCeeEEEEEEeCC-hHHHHHHHHHHhcCccEEEEEecCCch
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHA-ETEGLSRITTVVPAT-DESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~T-e~~~iSRiTIVV~gd-e~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      -++. .+.|+||.++++.+.+.++|.||+.++.... +..+.-.++++++-+ -..+.++.++|.+..+..++       
T Consensus       442 i~l~-~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------  513 (587)
T PRK07431        442 LAIR-NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------  513 (587)
T ss_pred             EEEC-CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------
Confidence            2332 4568899999999999999999999987543 333566788888743 23456666666654443322       


Q ss_pred             hhheeeEEEEEecCcc-c----HHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          423 FAERELMLIKVAVNTT-A----RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       423 ~V~REL~LIKV~~~~~-~----R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      .+++.+++|.|--..- +    -..+++.....+.++.-++...+.+-+.=+.+..+..++.|.
T Consensus       514 ~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~av~~Lh  577 (587)
T PRK07431        514 EDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVH  577 (587)
T ss_pred             EEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHHHHHHHH
Confidence            2456788888754321 2    347888888889999999988777777767666666666654

>PRK04435 hypothetical protein; Provisional

Probab=97.69  E-value=0.00024  Score=65.95  Aligned_cols=76  Identities=26%  Similarity=0.363  Sum_probs=61.7

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEe--cChHHHHHHHHHHhcCcceeeEeecC
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      -+.-+|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+++++.  ..+..+++++.+|+++-.|.+|+-+.
T Consensus        67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            477899999999999999999999999999999987533222 33555544  44458999999999999999998653

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.64  E-value=0.00031  Score=56.78  Aligned_cols=65  Identities=18%  Similarity=0.357  Sum_probs=52.9

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcE--EEEEEec--ChHHHHHHHHHHhcCccee
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KAL--FTIVVYG--TDKVLQQVMEQLQKLVNVL  167 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~--~TIVv~g--de~~ieQI~kQLeKLvdVi  167 (514)
                      +.+.+.|+||.|++|..+|+++|+||.+|.--|... ++.  +-|-+.|  ++..++++.+.|++..+-+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~   71 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV   71 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence            567789999999999999999999999998777665 343  5566667  5788999999999865533

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.63  E-value=0.00017  Score=55.44  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA  394 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g  394 (514)
                      +.+.+.|+||.|++++++|++.|+||.++...+....+..++++.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            678999999999999999999999999998866655677778888875

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.62  E-value=0.00022  Score=56.39  Aligned_cols=60  Identities=30%  Similarity=0.454  Sum_probs=46.5

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKL  163 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKL  163 (514)
                      .+.+.+.|+||.|.+++.+|++.|+||+++...+....+  .+.|.+++++  .+++.+.|.+.
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~~   64 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRRA   64 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHHC
Confidence            578899999999999999999999999999887764443  3667776544  23666666553

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.57  E-value=0.00021  Score=57.95  Aligned_cols=62  Identities=23%  Similarity=0.346  Sum_probs=47.5

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC----CcE--EEEEEecCh-HHHHHHHHHHhcCc
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD----KAL--FTIVVYGTD-KVLQQVMEQLQKLV  164 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted----~~~--~TIVv~gde-~~ieQI~kQLeKLv  164 (514)
                      +++...|+||++++|+.+|+++|.||.++.....+.    .++  |++.++..+ ..+.++.+.|+++-
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~   70 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC   70 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            688999999999999999999999999999865542    233  566666443 34677777776553

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.57  E-value=0.00039  Score=55.77  Aligned_cols=64  Identities=14%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CC--cEEEEEEe-cChHHHHHHHHHHhcCcce
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DK--ALFTIVVY-GTDKVLQQVMEQLQKLVNV  166 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~--~~~TIVv~-gde~~ieQI~kQLeKLvdV  166 (514)
                      +++.+.|+||.|.+++.++++.|.||.|+...+.. +.  ..+.+.+. .++..++.|.+.|++-.+|
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccE
Confidence            68899999999999999999999999999887752 22  23333333 2333488888888776444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.53  E-value=0.00028  Score=64.60  Aligned_cols=124  Identities=19%  Similarity=0.283  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ  177 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~  177 (514)
                      |+-..||+++||+||-|..++..+..-|+||..++.+.|.|.|++..+|+..+.. .++   |+.-=-|+++.       
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~---Lee~gF~Vr~~-------   69 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSV---LEEAGFTVRET-------   69 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHH---HHHCCcEEEee-------
Confidence            3456899999999999999999999999999999999999999999999865543 333   22222222222       


Q ss_pred             HHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccC
Q 047033          178 VERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTG--------DPGKMVAVQRNLSKF  249 (514)
Q Consensus       178 V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG--------~~~kIdafi~~L~~f  249 (514)
                           -.+-|..+. .-.-+            ..+++.++.-  |++-+|+.-=++-        ..+.+|+.++.|++-
T Consensus        70 -----dVlaVEmeD-~PG~l------------~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~  129 (142)
T COG4747          70 -----DVLAVEMED-VPGGL------------SRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA  129 (142)
T ss_pred             -----eEEEEEecC-CCCcH------------HHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence                 222222221 11122            4556665543  3344443332222        246789999999999


Q ss_pred             CcE
Q 047033          250 GIR  252 (514)
Q Consensus       250 GIl  252 (514)
                      ||.
T Consensus       130 gi~  132 (142)
T COG4747         130 GIK  132 (142)
T ss_pred             CCe
Confidence            985

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.51  E-value=0.00039  Score=53.52  Aligned_cols=61  Identities=15%  Similarity=0.242  Sum_probs=47.7

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC---Cc--EEEEEEec-ChHHHHHHHHHHhcC
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD---KA--LFTIVVYG-TDKVLQQVMEQLQKL  163 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted---~~--~~TIVv~g-de~~ieQI~kQLeKL  163 (514)
                      +.+.+.|+||.|.+|+.+++..|.||.++...+..+   .+  .+.+.+.. +.+.++++++.|++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            357889999999999999999999999999876532   23  35555553 447788999998764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.48  E-value=0.00068  Score=55.65  Aligned_cols=64  Identities=23%  Similarity=0.385  Sum_probs=52.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcC
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL  163 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKL  163 (514)
                      ...|+++=.|+||+++++++.+++.|.||..+......+.-.+.+.+++++...+++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            4689999999999999999999999999999998887654446777888888899999999876

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.48  E-value=0.00029  Score=56.89  Aligned_cols=64  Identities=20%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHhcC
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLYKL  409 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~KL  409 (514)
                      +|++...|+||++++|++.|+.+|.||..+........+.-.|.+.+..+.  ..++++.+.|+++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999999999999999999999877544445555555555553  2578888777665

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=97.46  E-value=0.00067  Score=77.01  Aligned_cols=90  Identities=16%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             cccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHH
Q 047033          324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKL  402 (514)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI  402 (514)
                      .++++.+|+.    +..+.-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++.. .+.+...|.+.+. .+-+.+++|
T Consensus       610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i  684 (702)
T PRK11092        610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANI  684 (702)
T ss_pred             ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHH
Confidence            4688999972    112223559999999999999999999999999999999754 4456777776666 578899999


Q ss_pred             HHHHhcCccEEEEEec
Q 047033          403 MQQLYKLIDLHEVRDL  418 (514)
Q Consensus       403 ~kQL~KLidVikV~dl  418 (514)
                      +++|.++-+|.+|...
T Consensus       685 ~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        685 MRKIRVMPDVIKVTRN  700 (702)
T ss_pred             HHHHhCCCCcceEEEc
Confidence            9999999999999764

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.42  E-value=0.00077  Score=47.04  Aligned_cols=57  Identities=30%  Similarity=0.437  Sum_probs=45.3

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHH
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQL  160 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQL  160 (514)
                      |++...|+||.+.++++.|+++|+||.++........+  .+++.+...+ .+++++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46788999999999999999999999999987765343  4666666544 677777765

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.41  E-value=0.00051  Score=52.82  Aligned_cols=55  Identities=25%  Similarity=0.387  Sum_probs=41.6

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHh
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQ  161 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLe  161 (514)
                      +.+.+.|+||.|.+++++|++.|+||.++...+....+  .+.+.++.    .+++.+-|+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~----~~~~~~~L~   58 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED----IEKAIEVLQ   58 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC----HHHHHHHHH
Confidence            67899999999999999999999999999886665333  35555654    344444443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.37  E-value=0.0012  Score=53.45  Aligned_cols=63  Identities=16%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC------ChHHHHHHHHHHhc
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA------TDESISKLMQQLYK  408 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g------de~~ieQI~kQL~K  408 (514)
                      .+.|...|+||+|.+|+++|++.|+||.+-.+..+.+..+--.-.+.+.      +++..+++.+.|.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999887755544443333332      34456667777654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.35  E-value=0.00049  Score=55.62  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChH--HHHHHHHHHhcC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDK--VLQQVMEQLQKL  163 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~--~ieQI~kQLeKL  163 (514)
                      +|++.-.|+||++++|++.|+.+|+||..+........+.  |.+.+..+..  .++++.+.|+++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4788999999999999999999999999998775334444  4555555532  578888777765

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.34  E-value=0.00044  Score=56.30  Aligned_cols=62  Identities=21%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH-HHHHHHHHHhcCc
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE-SISKLMQQLYKLI  410 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~-~ieQI~kQL~KLi  410 (514)
                      +++.-.|+||++++|+++|+.+|.||..+......  +.-.|.+.+.+.+. .++++.+.|+++-
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999999999999755443  45667777776554 6888888887764

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.33  E-value=0.0016  Score=50.59  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=45.2

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh------HHHHHHHHHH
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD------ESISKLMQQL  406 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde------~~ieQI~kQL  406 (514)
                      .|.|.+.|+||+|++++++|+..|.||.++.+....+  ....++.+.+.+      +..+++.+-|
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~l   66 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEEAL   66 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999877654  455666665443      4455554444

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.33  E-value=0.0013  Score=51.08  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=39.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD  150 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde  150 (514)
                      .|.+.+.|+||+|++++++|+..|+||.++.+...++....++.+.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence            5789999999999999999999999999999887765334555555433

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.32  E-value=0.003  Score=61.31  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=91.2

Q ss_pred             hHHHHHHhcCCEEEEecCC------EEEEEEeCChhHHHHHHHHhccCCcE-EEeeccceeeecccccCCCccccccccC
Q 047033          208 QIRWLVDIFRAKIVDISEY------SLTIEVTGDPGKMVAVQRNLSKFGIR-EIARTGKIALRREKLGASAPFWRFSAAS  280 (514)
Q Consensus       208 ~i~~l~~~F~akVVDvs~~------s~~iEvTG~~~kIdafi~~L~~fGIl-EvaRTG~iAl~R~~~~~~~~~~~~~~~~  280 (514)
                      +|.++.-..++.|+|.+-.      .+++-++|.+..+..+...|..++-. .+.    +.+.|..... +         
T Consensus        24 ~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~----i~v~~~~~~~-~---------   89 (190)
T PRK11589         24 TITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLL----IVMKRTTARP-R---------   89 (190)
T ss_pred             HHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeE----EEEEeccccc-c---------
Confidence            4588888999999999855      78889999999999998888776521 110    1122211000 0         


Q ss_pred             CCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCcccccCCCcccceeEEEEEEEeCcchHHHH
Q 047033          281 YPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNI  360 (514)
Q Consensus       281 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~R  360 (514)
                                                           ..                  .+   ..|.+++.-.|+||++.+
T Consensus        90 -------------------------------------~~------------------~~---~~~~v~v~G~DrPGIV~~  111 (190)
T PRK11589         90 -------------------------------------PA------------------MP---ATVWVQVEVADSPHLIER  111 (190)
T ss_pred             -------------------------------------cc------------------CC---ceEEEEEEECCCCCHHHH
Confidence                                                 00                  00   048899999999999999


Q ss_pred             HHHHhhccCceeeeEeeeecC----CCCeeEEEEEEeC-ChHHHHHHHHHHhcCcc
Q 047033          361 VTGVFARRGYNIQSLAVGHAE----TEGLSRITTVVPA-TDESISKLMQQLYKLID  411 (514)
Q Consensus       361 ItgLFsRRGyNIeSLtVg~Te----~~~iSRiTIVV~g-de~~ieQI~kQL~KLid  411 (514)
                      ||.+|+.||+||++|......    .+.+-+|.+.+.- .+..++++..+|+++-+
T Consensus       112 vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~  167 (190)
T PRK11589        112 FTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCT  167 (190)
T ss_pred             HHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            999999999999999986433    3456677777763 23346666666666543

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.29  E-value=0.00054  Score=55.80  Aligned_cols=62  Identities=19%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH-HHHHHHHHHhcCc
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK-VLQQVMEQLQKLV  164 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~-~ieQI~kQLeKLv  164 (514)
                      +++.-.|+||++++|+++|+.+|.||..+......+.=.+.+.++..+. .++++.+.|+++-
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            6788899999999999999999999999975544322125556665443 6788888887764

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=97.24  E-value=0.0017  Score=74.12  Aligned_cols=91  Identities=21%  Similarity=0.363  Sum_probs=74.8

Q ss_pred             cccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHH
Q 047033          324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKL  402 (514)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI  402 (514)
                      ..+++..|+.   ..+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+...|++++. .+-..++++
T Consensus       650 eR~I~V~W~~---~~~~-~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l  725 (743)
T PRK10872        650 ERIVDAVWGE---SYSS-GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV  725 (743)
T ss_pred             ceEEEeEecC---CCCc-eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence            4688999972   1122 2255899999999999999999999999999999986544367778887776 588899999


Q ss_pred             HHHHhcCccEEEEEec
Q 047033          403 MQQLYKLIDLHEVRDL  418 (514)
Q Consensus       403 ~kQL~KLidVikV~dl  418 (514)
                      +++|+++.+|.+|...
T Consensus       726 ~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        726 LGKLNQVPDVIDARRL  741 (743)
T ss_pred             HHHHhcCCCcCeEEec
Confidence            9999999999999764

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=97.21  E-value=0.0017  Score=73.52  Aligned_cols=88  Identities=16%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             cccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHH
Q 047033          324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKL  402 (514)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI  402 (514)
                      .++++..|+.    +....-.-+|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+.+. .+-+.+..|
T Consensus       594 er~I~v~W~~----~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i  668 (683)
T TIGR00691       594 EKIIEVEWNA----SKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI  668 (683)
T ss_pred             ccEEEEEecC----CCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence            4788999972    2122235699999999999999999999999999999999654 457777777765 588899999


Q ss_pred             HHHHhcCccEEEEE
Q 047033          403 MQQLYKLIDLHEVR  416 (514)
Q Consensus       403 ~kQL~KLidVikV~  416 (514)
                      +.+|.++-+|.+|.
T Consensus       669 i~~L~~i~~V~~v~  682 (683)
T TIGR00691       669 MLKIKTKNDVIVVK  682 (683)
T ss_pred             HHHHhCCCCceEEe
Confidence            99999999999985

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.21  E-value=0.0016  Score=60.60  Aligned_cols=75  Identities=24%  Similarity=0.380  Sum_probs=63.4

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEec
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      +.+||++.++|+.|.|+++..+.++++.||-+++-.-- -.+...+|+.++  +-+..++.|+..|+|+-.|.+|+-+
T Consensus        71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv  147 (150)
T COG4492          71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV  147 (150)
T ss_pred             eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence            46899999999999999999999999999988776532 235566666665  7788999999999999999999854

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.20  E-value=0.0017  Score=60.39  Aligned_cols=75  Identities=25%  Similarity=0.376  Sum_probs=62.9

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeee-cCCCcEEEEEE--ecChHHHHHHHHHHhcCcceeeEeec
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGL-NKDKALFTIVV--YGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~-Ted~~~~TIVv--~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      -+.++|++.++++.|.|+++....++++.||-+++..- -+..+-+||.+  .+-+..++.++..|.|+-.|.+|+-+
T Consensus        70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv  147 (150)
T COG4492          70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV  147 (150)
T ss_pred             ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence            57899999999999999999999999999998887653 23333466654  47788899999999999999999854

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.18  E-value=0.0025  Score=50.03  Aligned_cols=62  Identities=18%  Similarity=0.222  Sum_probs=46.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec------ChHHHHHHHHHHhcC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG------TDKVLQQVMEQLQKL  163 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g------de~~ieQI~kQLeKL  163 (514)
                      .|.+...|+||+|++++++|+..|+||.++.+....+....++.+..      +++..+++.+.|.+.
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            47889999999999999999999999999998765543334554432      344566666666543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.15  E-value=0.0024  Score=51.92  Aligned_cols=45  Identities=18%  Similarity=0.364  Sum_probs=36.6

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEE
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVV  146 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv  146 (514)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v   47 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV   47 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence            578899999999999999999999999999987653332345544

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.14  E-value=0.0021  Score=52.58  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=47.9

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEE-e---C----ChHHHHHHHHHHhcC
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVV-P---A----TDESISKLMQQLYKL  409 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV-~---g----de~~ieQI~kQL~KL  409 (514)
                      +|.+...|+||+|++|++.|++.|.||.+-.+... +. ..--++.| +   |    +++..+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~-~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NG-RLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CC-EEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999988854 33 34444444 3   2    345678888888764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.10  E-value=0.0033  Score=51.61  Aligned_cols=64  Identities=25%  Similarity=0.397  Sum_probs=53.2

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      ...|++.-.|+||++++|++.+++.|.||..+......+  .-.+++.+.++++..+++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~--~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGG--RFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETT--EEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcC--eEEEEEEEEeCcccHHHHHHHHHHH
Confidence            458999999999999999999999999999988887654  4568888888888999999999876

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.06  E-value=0.0037  Score=51.67  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHHhc
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQLYK  408 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL~K  408 (514)
                      +|.|...|+||+|.++++.|++.|+||.+-.+..|.+...--.-.|.+++     ++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999887766554444444422     2445556666654

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.03  E-value=0.0054  Score=48.17  Aligned_cols=61  Identities=28%  Similarity=0.278  Sum_probs=45.8

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC------ChHHHHHHHHHHhc
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA------TDESISKLMQQLYK  408 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g------de~~ieQI~kQL~K  408 (514)
                      .|.|.+.|+||+|++|+++|+..|.||.++.+....+  ..-.++.+.+      +++..+++.+.|.+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~   68 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGE   68 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence            4788999999999999999999999999999976543  4445555542      24456666666654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.02  E-value=0.0052  Score=50.35  Aligned_cols=69  Identities=12%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChHHHHHHHHHHhcCccEEE
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDESISKLMQQLYKLIDLHE  414 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~~ieQI~kQL~KLidVik  414 (514)
                      ++.+.+.|+||.|.+|...|+.+|+|+..|.--|... +.-..+-|-++|++..+++++++|.+...=++
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~   71 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN   71 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence            4566678999999999999999999999999988765 34455666677888889999999988655433

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.00  E-value=0.0045  Score=50.29  Aligned_cols=46  Identities=22%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP  393 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~  393 (514)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+.+.+  +..-.++.+.
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~--~~~~d~f~v~   48 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG--DMAVNVFYVT   48 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC--CeEEEEEEEE
Confidence            578899999999999999999999999999887553  3444555553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=96.99  E-value=0.005  Score=49.90  Aligned_cols=61  Identities=28%  Similarity=0.433  Sum_probs=45.3

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEe---c----ChHHHHHHHHHHhc
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVY---G----TDKVLQQVMEQLQK  162 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~---g----de~~ieQI~kQLeK  162 (514)
                      .+.+...|+||+|.+++++|++.|+||.+-.+..+.+.-. =++.+.   +    +++..+++.+.|.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999877754422 222332   1    34556677777654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.98  E-value=0.0057  Score=54.99  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV  415 (514)
                      +.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ..-..+-|=+.|+.+.+++++++|.+...-++|
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            678888889999999999999999999999999998743 344455666778888899999999886654443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.96  E-value=0.0037  Score=51.12  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe----c----ChHHHHHHHHHHhcC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY----G----TDKVLQQVMEQLQKL  163 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~----g----de~~ieQI~kQLeKL  163 (514)
                      +|.++..|+||++++|+++|++.|.||.+-.+....+.-.-++.|.    +    +++..+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999885522222333332    2    345677888887664

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.93  E-value=0.0026  Score=52.46  Aligned_cols=63  Identities=21%  Similarity=0.310  Sum_probs=46.8

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcC
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL  163 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKL  163 (514)
                      .+|++.-.|+||+.++|+++++.+|.||..+......+.-.|.+.++.+....+++.+.|+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence            578999999999999999999999999999988873332235556655444456666555543

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.91  E-value=0.0057  Score=50.15  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecChHHHHHHHHHHhcCcceee
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGTDKVLQQVMEQLQKLVNVLK  168 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gde~~ieQI~kQLeKLvdVik  168 (514)
                      ++.+.+.|+||.|.++...|+.+|+|+.+|.--|.... ..  +=|-++|++..+++++++|.+...=++
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~   71 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN   71 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence            45667789999999999999999999999998887654 32  445566777789999999988655333

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=96.90  E-value=0.0019  Score=59.23  Aligned_cols=124  Identities=20%  Similarity=0.328  Sum_probs=82.2

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      |+-..||+++||+||=|..++......|+||..++.+.|.+-+|-||  +|+- .+...+..+               +.
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm--vV~~-~d~A~~~Le---------------e~   62 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM--VVDR-PDEAHSVLE---------------EA   62 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE--EcCC-hHHHHHHHH---------------HC
Confidence            44568999999999999999999999999999999999999999776  4553 233333332               23


Q ss_pred             hhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEec--------CHHHHHHHHHHhccCCcE
Q 047033          422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTG--------DLDKMVALQRLLEPYGIC  486 (514)
Q Consensus       422 ~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG--------~~~KIdafi~lL~pyGIl  486 (514)
                      .++-|+--.+-|..+.. -.-+-.|+++++..  |++-+++.-=++-        ..+.+|+.++.|+..||.
T Consensus        63 gF~Vr~~dVlaVEmeD~-PG~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~  132 (142)
T COG4747          63 GFTVRETDVLAVEMEDV-PGGLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK  132 (142)
T ss_pred             CcEEEeeeEEEEEecCC-CCcHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence            34444444454544321 12334455555443  3334444332222        346789999999999975

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=96.75  E-value=0.01  Score=67.71  Aligned_cols=117  Identities=16%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             cccccccccceeeccCCcccccCccccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEE
Q 047033           53 VSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLA  132 (514)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLt  132 (514)
                      |-.++++..||..||.-=+--..-....+.+..-.=.. ..  ...-.-.|.+.+.|++|+|+.|+.+++.-+.||.+++
T Consensus       582 IvG~it~grGI~VHr~dC~nl~~l~~~~er~i~v~W~~-~~--~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~  658 (702)
T PRK11092        582 IIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDK-ET--EQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLN  658 (702)
T ss_pred             EEEEEECCCCEEEECcCCchhhhhhcCcceeEEeEECC-CC--CceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEE
Confidence            44588888999999843321111001111111100000 00  0123458999999999999999999999999999999


Q ss_pred             eeecCCC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeEeec
Q 047033          133 VGLNKDK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       133 Vg~Ted~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +....+. ..+++.+. .+-+.+++|+++|.++-+|.+|...
T Consensus       659 ~~~~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        659 TEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN  700 (702)
T ss_pred             EEEcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence            7543322 23555555 5678999999999999999999864

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.72  E-value=0.0039  Score=63.85  Aligned_cols=70  Identities=9%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             ccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecC-hHHHHHHHHHHhcCcc
Q 047033           96 TNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGT-DKVLQQVMEQLQKLVN  165 (514)
Q Consensus        96 ~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gd-e~~ieQI~kQLeKLvd  165 (514)
                      .+|+++++++.-.|+||+.++||++|+.+|.||+.++...+...+.  |.+.+... ...++++...|+++-+
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~   75 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA   75 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999874444455  44444422 2236666666665543

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.71  E-value=0.0052  Score=50.66  Aligned_cols=63  Identities=29%  Similarity=0.263  Sum_probs=46.1

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      ..|++.-.|+||+.++|+++++.+|.||..+..-.....-.-||.+.++  ....+++.+.|+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHH
Confidence            5789999999999999999999999999999887744433444444443  33455665555443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.69  E-value=0.0099  Score=49.18  Aligned_cols=41  Identities=17%  Similarity=0.300  Sum_probs=36.5

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCe
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGL  385 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~i  385 (514)
                      |.+.|...|+||++++++|.|++.|+||.+-.+-.+.+.-.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~   42 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLA   42 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeE
Confidence            68899999999999999999999999999988877755543

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.67  E-value=0.0098  Score=51.37  Aligned_cols=68  Identities=12%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT-DESISKLMQQLYKLI  410 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd-e~~ieQI~kQL~KLi  410 (514)
                      .+-+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=++|. +..+++++++|.+-+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~   82 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI   82 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence            35678888899999999999999999999999999987543 334555556775 778888888887743

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.67  E-value=0.0094  Score=49.26  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=44.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEE-ec-----ChHHHHHHHHHHhc
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVV-YG-----TDKVLQQVMEQLQK  162 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv-~g-----de~~ieQI~kQLeK  162 (514)
                      ++.++..|+||+|.++++.|++.|+||.+-.+..|.+.-. =++.| +.     +++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999987765532 23333 22     22445556666644

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.66  E-value=0.0057  Score=62.62  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033          340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-DESISKLMQQLYKLI  410 (514)
Q Consensus       340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KLi  410 (514)
                      ..|.++.+++...|+||+.++||++|+.+|.||..++...+...++-.|.+.+... ...++++...|+++-
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~   74 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIA   74 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999755566666677666522 223566665555543

>PRK05092 PII uridylyl-transferase; Provisional

Probab=96.59  E-value=0.1  Score=61.15  Aligned_cols=67  Identities=16%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe------CChHHHHHHHHHHhcCcc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP------ATDESISKLMQQLYKLID  411 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~------gde~~ieQI~kQL~KLid  411 (514)
                      ...+.|...|+||+|.+|+++|++.|+||.+..+.. .+...--+-.+.+      .+++..++|.+.|.+.++
T Consensus       843 ~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        843 FTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             eEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            368999999999999999999999999999999984 4443333333333      234457778888877653

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=96.57  E-value=0.013  Score=56.88  Aligned_cols=120  Identities=14%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcc---e-eeEeec
Q 047033           97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVN---V-LKVEDL  172 (514)
Q Consensus        97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvd---V-ikV~dl  172 (514)
                      +++..+|+++=.|+||++++|+++++..|.||.......-...--|.+.+++....+.++...|.++.+   + +.+...
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~   84 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT   84 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence            346779999999999999999999999999999988877655433566678877788888888877763   2 223332


Q ss_pred             CChhhHHhhee-eEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC
Q 047033          173 SNEPQVERELM-LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY  226 (514)
Q Consensus       173 t~~~~V~REL~-LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~  226 (514)
                      ....  .++.. .+.|.+....|+-|+        .++.+..-.++..|.|.+.+
T Consensus        85 ~~~~--~~~~~~~~~v~v~G~DrPGIV--------~~vT~~la~~~iNI~~L~T~  129 (190)
T PRK11589         85 TARP--RPAMPATVWVQVEVADSPHLI--------ERFTALFDSHHMNIAELVSR  129 (190)
T ss_pred             cccc--cccCCceEEEEEEECCCCCHH--------HHHHHHHHHcCCChhheEEe
Confidence            2211  23333 366766666677662        12344444555666665544

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=96.56  E-value=0.031  Score=64.60  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-C---ChHHHHHHHHHHhc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-A---TDESISKLMQQLYK  408 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-g---de~~ieQI~kQL~K  408 (514)
                      ...+.|...|+||+|.+|+.+|+.+|.||.+..+........--+.+... |   +++..+.|.++|.+
T Consensus       779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~  847 (850)
T TIGR01693       779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA  847 (850)
T ss_pred             eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998765444444444322 2   34566777776653

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=96.54  E-value=0.014  Score=66.55  Aligned_cols=88  Identities=18%  Similarity=0.336  Sum_probs=73.0

Q ss_pred             ccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHH
Q 047033          325 QVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLM  403 (514)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~  403 (514)
                      ++++..|+--.    ++.-...|.|...|++|+|+.|+.++++-+.||.+++.... +.+..-|.+.+. .+-..+.+|+
T Consensus       612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~  686 (701)
T COG0317         612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVL  686 (701)
T ss_pred             eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHHH
Confidence            67888898432    33447899999999999999999999999999999999886 555555555554 3788999999


Q ss_pred             HHHhcCccEEEEEe
Q 047033          404 QQLYKLIDLHEVRD  417 (514)
Q Consensus       404 kQL~KLidVikV~d  417 (514)
                      .||..+-+|..|..
T Consensus       687 ~~l~~~~~V~~v~R  700 (701)
T COG0317         687 ARLKQLPDVISVRR  700 (701)
T ss_pred             HHHhcCCCeEEEEe
Confidence            99999999999864

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.51  E-value=0.0098  Score=57.61  Aligned_cols=84  Identities=23%  Similarity=0.222  Sum_probs=68.6

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchh
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPF  423 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~  423 (514)
                      ..-||+.++|+||||..++|+.+.+|-||.-...--..+....+|-+-++|- +..+.+...|.-.-.|++|+.+..-+-
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi-~d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI-DDFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC-CCHHHHHHHhhccceEEEeeecchHHH
Confidence            4579999999999999999999999999986554444444488888888864 458899999999999999999887766


Q ss_pred             hheee
Q 047033          424 AEREL  428 (514)
Q Consensus       424 V~REL  428 (514)
                      ++--=
T Consensus        81 iyGKR   85 (218)
T COG1707          81 IYGKR   85 (218)
T ss_pred             HhCcE
Confidence            65443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.47  E-value=0.0043  Score=66.17  Aligned_cols=72  Identities=17%  Similarity=0.304  Sum_probs=60.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      -.|+|.+.=+|+||++++|+.++++.|+||..+.+....+.+.|.|-+++  ..-+.++++|+++-+|++|..+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            45789999999999999999999999999999999777655567776665  3355888999999999998754

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.42  E-value=0.017  Score=51.98  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYGTDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~gde~~ieQI~kQLeKLvdVikV  169 (514)
                      .+..+.+.+.|+||.|.+|...|+.+|+|+.+|.--|.... . + +=|-++|+...+++++++|.+...-++|
T Consensus        40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            46788888899999999999999999999999999887544 2 2 4555677777789999999886654443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.37  E-value=0.021  Score=47.72  Aligned_cols=62  Identities=15%  Similarity=0.125  Sum_probs=46.0

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C----ChHHHHHHHHHHh
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A----TDESISKLMQQLY  407 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g----de~~ieQI~kQL~  407 (514)
                      .+|.|...|+||+|.+|+.+|++-|.+|.+-.+..-... .-..-.|.+  |    |++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ger-v~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGW-FMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCe-EEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999999999999877765443 333333333  2    3456777777763

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.29  E-value=0.02  Score=49.53  Aligned_cols=64  Identities=13%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--E-EEEEEecC-hHHHHHHHHHHhc
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--L-FTIVVYGT-DKVLQQVMEQLQK  162 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~-~TIVv~gd-e~~ieQI~kQLeK  162 (514)
                      .+-.|.+.+.|+||.|.++...|+.+|+|+.+|.--|.....  + +=|-++|. +..+++++++|.+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~   80 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN   80 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence            456788888999999999999999999999999999876542  2 44445664 6778888888877

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.25  E-value=0.031  Score=57.27  Aligned_cols=70  Identities=16%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC--ChHHHHHHHHHHhcCc
Q 047033          341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA--TDESISKLMQQLYKLI  410 (514)
Q Consensus       341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g--de~~ieQI~kQL~KLi  410 (514)
                      .|+++.+++...|+||+.+.|+++++.+|.||..++.......+.-.|.+.+..  ....++++...|+++-
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA   74 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999887434455555555554  1233555555555544

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.25  E-value=0.0093  Score=60.99  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEec--ChHHHHHHHHHHhcCc
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYG--TDKVLQQVMEQLQKLV  164 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~g--de~~ieQI~kQLeKLv  164 (514)
                      |+++.|++.-.|+||+++.|+++|+.+|.||+.++.......+.  |.+.++.  ....++++...|+++-
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA   74 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999887333344  4444443  1233556665555554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.24  E-value=0.0093  Score=63.67  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=60.0

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      -.|+|.+.=+|+||++++|+.++++.|+||.++.+....  +..-|+|-+++  ..-+.++++|+|+.+|++|.-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            468999999999999999999999999999999996555  55556665654  4566899999999999998754

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=96.22  E-value=0.041  Score=62.63  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             ccccccccccceeeccCCcccccCccccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeE
Q 047033           52 SVSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESL  131 (514)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSL  131 (514)
                      .|-.++++..||..||.-=+-......  +.+..-.=. ...+  ..-.-.|.+.+.|++|+|+.|+.+++.-+.||.++
T Consensus       567 ~IiG~it~g~Gi~VHr~dC~nl~~~~~--er~I~v~W~-~~~~--~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v  641 (683)
T TIGR00691       567 PIIGIVTKGKGLSVHHKDCKNLKNYKQ--EKIIEVEWN-ASKP--RRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSI  641 (683)
T ss_pred             cEEEEEECCCCEEEEccCchhhhhcCc--ccEEEEEec-CCCC--ceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEE
Confidence            345588888899999843322211110  111110000 0001  12355899999999999999999999999999999


Q ss_pred             EeeecCCC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033          132 AVGLNKDK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus       132 tVg~Ted~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~  170 (514)
                      ++....+. ..+++.+. .+-+.+..|+.+|.++-+|.+|.
T Consensus       642 ~~~~~~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~  682 (683)
T TIGR00691       642 STKTYGKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK  682 (683)
T ss_pred             EeEEcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence            98654322 23555555 56789999999999999999885

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.21  E-value=0.026  Score=46.74  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEe
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVY  147 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~  147 (514)
                      |.|.|+..|+||++++++|.|++.|+||.+-.+-.+.|.-. =+++|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~   49 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT   49 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence            57899999999999999999999999999998887766533 344443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=96.05  E-value=0.15  Score=59.73  Aligned_cols=65  Identities=15%  Similarity=0.311  Sum_probs=49.7

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C----ChHHHHHHHHHHhcCc
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A----TDESISKLMQQLYKLI  410 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g----de~~ieQI~kQL~KLi  410 (514)
                      -.|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+--.-.|.+  |    +++..++|.+.|.+.+
T Consensus       815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999887 444444444443  2    2346677777776654

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.04  E-value=0.039  Score=45.93  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      ++.+.+.|+||.|.++...|..+|+|+..|.--|.-.. .-..+-|-++|+...++++++.|.+
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            35556689999999999999999999999999886543 3455566677888888888888876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.04  E-value=0.037  Score=46.25  Aligned_cols=61  Identities=13%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEE-ec----ChHHHHHHHHHHh
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVV-YG----TDKVLQQVMEQLQ  161 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv-~g----de~~ieQI~kQLe  161 (514)
                      .+|.|...|+||+|.+|+.+|++-|++|.+-.++--.+..  .|-++- +|    |++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999999999999998887655443  244432 22    3566777777764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.03  E-value=0.023  Score=55.13  Aligned_cols=80  Identities=25%  Similarity=0.406  Sum_probs=62.9

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC--CcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhH
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD--KALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQV  178 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted--~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V  178 (514)
                      .-||+.++|+||||..++|+.+.+|-||.-...-...|  .+.+-.-++|-+ ..+.+...|+-.-.|+.|+.+..-+.+
T Consensus         3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~i   81 (218)
T COG1707           3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEEI   81 (218)
T ss_pred             ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHHH
Confidence            46899999999999999999999999998665544334  244555566643 578999999999999999998876665


Q ss_pred             Hhh
Q 047033          179 ERE  181 (514)
Q Consensus       179 ~RE  181 (514)
                      +--
T Consensus        82 yGK   84 (218)
T COG1707          82 YGK   84 (218)
T ss_pred             hCc
Confidence            543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.03  E-value=0.017  Score=56.34  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC--ChHHHHH
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA--TDESISK  401 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g--de~~ieQ  401 (514)
                      .|+|-+.=.|+||++.+|+.++.+.|+||.++.+|..+..+-.=|.|.+++  +++.+++
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            478888889999999999999999999999999999888777778888875  4555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.92  E-value=0.035  Score=44.46  Aligned_cols=60  Identities=15%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhc
Q 047033          347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYK  408 (514)
Q Consensus       347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~K  408 (514)
                      +++.+.++||-|.++..+++. |.||..+.-.... .+..+++++++. +.+.++++.++|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            468889999999999999999 9999999887654 566777777773 45789999999876

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=95.91  E-value=0.058  Score=61.65  Aligned_cols=113  Identities=17%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             ccccccccccceeeccCCccc--ccC--ccccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCce
Q 047033           52 SVSSSLSKSNKIFLHSEPKKL--AVS--ARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYN  127 (514)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyN  127 (514)
                      .|-.++.+.+||..||..-+-  ...  ++.-.-.+.-+.- +     ...-...|.|...|++|+|+.|+.++++-+.|
T Consensus       581 ~IvG~it~g~Gi~iHr~dC~~~~~~~~~~per~i~v~W~~~-~-----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~n  654 (701)
T COG0317         581 PIVGYITKGRGISIHRQDCPNFLQLAGHAPERVIDVSWGPE-Y-----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKIN  654 (701)
T ss_pred             cEEEEEecCCcEEEehhcChhHHHhhhcCcceEEEEEecCC-C-----CcceEEEEEEEEccccchHHHHHHHHHhCCCc
Confidence            345689999999999844322  111  1101111111110 0     12467799999999999999999999999999


Q ss_pred             eeeEEeeecCCCc--EEEEEEe-cChHHHHHHHHHHhcCcceeeEee
Q 047033          128 IESLAVGLNKDKA--LFTIVVY-GTDKVLQQVMEQLQKLVNVLKVED  171 (514)
Q Consensus       128 IeSLtVg~Ted~~--~~TIVv~-gde~~ieQI~kQLeKLvdVikV~d  171 (514)
                      |.++....+ +.+  .|.+.+. .+-..+.+|+.||..+-+|..|..
T Consensus       655 i~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R  700 (701)
T COG0317         655 VLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRR  700 (701)
T ss_pred             eEEeecccc-CCceEEEEEEEEECcHHHHHHHHHHHhcCCCeEEEEe
Confidence            999998876 333  3544444 567889999999999999999864

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.90  E-value=0.014  Score=64.10  Aligned_cols=74  Identities=22%  Similarity=0.394  Sum_probs=59.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      ..++|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-..+++-|+..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence            45678777899999999999999999999999999987765543334444455567888889999999888765

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.89  E-value=0.035  Score=58.00  Aligned_cols=67  Identities=16%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee---ecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG---HAETEGLSRITTVVPA-TDESISKLMQQLYKL  409 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg---~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KL  409 (514)
                      +.++|++.+.|+||.|.+++.+++..|.||.++...   +....+...+++.++. +.+.+++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            467999999999999999999999999999999776   3334467788888874 567788999988764

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK07334 threonine dehydratase; Provisional

Probab=95.87  E-value=0.037  Score=58.67  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEe-CChHHHHHHHHHHhcC
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVP-ATDESISKLMQQLYKL  409 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~-gde~~ieQI~kQL~KL  409 (514)
                      ..+|.|.+.|+||+|++|+.+++.-+.||.+++.....   ..+..+|.+++. .+.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999986431   356777777776 4888999999999986

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.86  E-value=0.034  Score=46.81  Aligned_cols=63  Identities=11%  Similarity=0.030  Sum_probs=45.1

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeee--ecCCCCeeEEEEEEeC----ChHHHHHHHHHHhc
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG--HAETEGLSRITTVVPA----TDESISKLMQQLYK  408 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg--~Te~~~iSRiTIVV~g----de~~ieQI~kQL~K  408 (514)
                      .|.|...|+||+|.+|+..|.+-|++|.+-.++  .-...-+.-+-+..+|    |++..+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999997777  4333333334443334    34556666666644

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.82  E-value=0.046  Score=45.46  Aligned_cols=61  Identities=13%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc-E--EEEEEecChHHHHHHHHHHhc
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA-L--FTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~--~TIVv~gde~~ieQI~kQLeK  162 (514)
                      .+.+.+.|+||.|.++...|+++|+|+..|.--|..... -  +=|-++|+...++++++.|.+
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            355667899999999999999999999999988875542 2  456667877788888888866

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=95.81  E-value=0.023  Score=54.43  Aligned_cols=70  Identities=20%  Similarity=0.349  Sum_probs=59.2

Q ss_pred             EEEEEEE--eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEE
Q 047033          345 HTLSMLV--NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVR  416 (514)
Q Consensus       345 htLSIlV--eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~  416 (514)
                      +.|.++.  .+.||+|+.|+++.+.||++|..+-....|-.+-+++||++++  ..-..++.||.|+--|.+|.
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence            4555555  5689999999999999999999998888877788999999984  35567889999999998875

>PRK11899 prephenate dehydratase; Provisional

Probab=95.71  E-value=0.056  Score=55.41  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV  415 (514)
                      |-.|.+.+.|+||.|.++.+.|++||+|+.+|..-|+-. ++-..+-|-+.|  ++..+++..++|++.-.-++|
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~kv  268 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVRI  268 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEEE
Confidence            567777889999999999999999999999999999854 466677777777  456788888888876553333

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.68  E-value=0.05  Score=62.61  Aligned_cols=118  Identities=17%  Similarity=0.262  Sum_probs=78.8

Q ss_pred             ccccccccccceeeccCCcccccCc-cccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCceeee
Q 047033           52 SVSSSLSKSNKIFLHSEPKKLAVSA-RSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIES  130 (514)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeS  130 (514)
                      .|-.|+++..||..||.-=+-...- ...-+.+..=.=.. ...  ..-.-.|.|.+.|++|+|+.|+.+++.-+.||.+
T Consensus       620 ~IvG~iTrGrGI~VHr~dC~nl~~l~~~~~eR~I~V~W~~-~~~--~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~  696 (743)
T PRK10872        620 EIVGFITQGRGISIHRADCEQLAELRSHAPERIVDAVWGE-SYS--SGYSLVVRVTANDRSGLLRDITTILANEKVNVLG  696 (743)
T ss_pred             cEEEEEECCCCEEEEcccChhhHhhhhcCCceEEEeEecC-CCC--ceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEE
Confidence            3556888889999998443211110 00001111000000 000  1134589999999999999999999999999999


Q ss_pred             EEeeecCCCc--EEEEEEe-cChHHHHHHHHHHhcCcceeeEeec
Q 047033          131 LAVGLNKDKA--LFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       131 LtVg~Ted~~--~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +++......+  .+++++. .+-..+++++++|.++-+|++|...
T Consensus       697 v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        697 VASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL  741 (743)
T ss_pred             EEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence            9985443123  3666655 5678999999999999999999864

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.63  E-value=0.015  Score=56.07  Aligned_cols=74  Identities=20%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc----EEEE--EEec-ChHHHHHHHHHHhcCcceeeE
Q 047033           97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA----LFTI--VVYG-TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~----~~TI--Vv~g-de~~ieQI~kQLeKLvdVikV  169 (514)
                      ....+.+.+-+.|+||++++++.+|.++|+||++|..-.---++    .+++  .+.- ---.+.+++.+++.|-|=+.|
T Consensus        89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v  168 (176)
T COG2716          89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNV  168 (176)
T ss_pred             CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcc
Confidence            45678999999999999999999999999999999877543322    2333  2221 123467777777766554444


Q ss_pred             e
Q 047033          170 E  170 (514)
Q Consensus       170 ~  170 (514)
                      +
T Consensus       169 ~  169 (176)
T COG2716         169 D  169 (176)
T ss_pred             e
Confidence            3

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.57  E-value=0.027  Score=61.89  Aligned_cols=73  Identities=23%  Similarity=0.401  Sum_probs=60.7

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      .|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+..=|.|-++  +..-+.++++|.++.+|.+|..+
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD--DPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC--CCCCHHHHHHHhcCCCcceEEEE
Confidence            47888888999999999999999999999999999987666544544444  55568888899999999998765

>PRK07431 aspartate kinase; Provisional

Probab=95.33  E-value=0.67  Score=51.55  Aligned_cols=200  Identities=17%  Similarity=0.225  Sum_probs=121.7

Q ss_pred             eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCccee----eEeec--C-Chh----
Q 047033          108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVL----KVEDL--S-NEP----  176 (514)
Q Consensus       108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVi----kV~dl--t-~~~----  176 (514)
                      .+.||++.|+.+.|++.|+||..++   + -...+++++..++  .+++++.|++....-    .+..+  + +.+    
T Consensus       359 ~~~~gi~~ki~~aL~~~~I~i~~i~---s-Se~~Is~vv~~~d--~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~g  432 (587)
T PRK07431        359 MGRPGIAAKMFDTLAEAGINIRMIS---T-SEVKVSCVIDAED--GDKALRAVCEAFELEDSQIEINPTASGQDEPEVRG  432 (587)
T ss_pred             ccCccHHHHHHHHHHHCCCcEEEEE---c-CCCEEEEEEcHHH--HHHHHHHHHHHhccCCcccccCccccCCCCCcEEE
Confidence            4789999999999999999998888   2 2234778887543  556666666555222    12211  0 000    


Q ss_pred             -hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC-------EEEEEEeCChhHHHHHHHHhcc
Q 047033          177 -QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY-------SLTIEVTGDPGKMVAVQRNLSK  248 (514)
Q Consensus       177 -~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~-------s~~iEvTG~~~kIdafi~~L~~  248 (514)
                       ...+.++++.+..-+ ....+        ...|+.+...++..|.=++..       +..+-++-+.+.++...+.++.
T Consensus       433 Ia~~~~~~~i~l~~~~-~~~g~--------~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~  503 (587)
T PRK07431        433 VALDRNQAQLAIRNVP-DRPGM--------AASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRE  503 (587)
T ss_pred             EEccCCEEEEEECCCC-CCccH--------HHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHH
Confidence             125567777774211 11111        113588888888888888752       4667788888877776666554


Q ss_pred             CCcEEEeeccceeeecccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCccccccc
Q 047033          249 FGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLD  328 (514)
Q Consensus       249 fGIlEvaRTG~iAl~R~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~  328 (514)
                      +.- +. -.+.+.+.++                                                               
T Consensus       504 l~~-~~-~~~~i~~~~~---------------------------------------------------------------  518 (587)
T PRK07431        504 LAK-QL-PGAEVEDGPA---------------------------------------------------------------  518 (587)
T ss_pred             HHH-hc-CCceEEEeCC---------------------------------------------------------------
Confidence            110 00 0000000000                                                               


Q ss_pred             CCcccccCCCcccceeEEEEEE---EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHH
Q 047033          329 PHWGVLNDDDTSGLRSHTLSML---VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQ  405 (514)
Q Consensus       329 ~~~~~~~~~~~~~~~khtLSIl---VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQ  405 (514)
                                     --.+|+.   ..++||++.|+...+++.|+|+..++.      .--+++++|+  ++..++.++.
T Consensus       519 ---------------va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~--~~~~~~av~~  575 (587)
T PRK07431        519 ---------------IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVA--EDDGVKALQA  575 (587)
T ss_pred             ---------------eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEe--HHHHHHHHHH
Confidence                           0112222   247899999999999999999988882      1135777776  5677888888


Q ss_pred             HhcCc
Q 047033          406 LYKLI  410 (514)
Q Consensus       406 L~KLi  410 (514)
                      |++-.
T Consensus       576 Lh~~f  580 (587)
T PRK07431        576 VHQAF  580 (587)
T ss_pred             HHHHh
Confidence            87765

>PRK11899 prephenate dehydratase; Provisional

Probab=95.32  E-value=0.11  Score=53.38  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=55.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV  169 (514)
                      .+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+.+. + + |=|-++|  ++..+++..++|++.-.-++|
T Consensus       193 ~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~kv  268 (279)
T PRK11899        193 IVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVRI  268 (279)
T ss_pred             ceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEEE
Confidence            46778888899999999999999999999999999998654 3 2 4555665  466788888888876554433

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.31  E-value=0.038  Score=53.99  Aligned_cols=57  Identities=25%  Similarity=0.256  Sum_probs=46.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEec--ChHHHHH
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYG--TDKVLQQ  155 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~g--de~~ieQ  155 (514)
                      ..|+|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+  +|.|.+++  +++.+++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            457888888999999999999999999999999999977554  47777775  4555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.21  E-value=0.076  Score=44.76  Aligned_cols=61  Identities=15%  Similarity=0.184  Sum_probs=45.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEee--ecCCC--cEEEEEEec----ChHHHHHHHHHHhc
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVG--LNKDK--ALFTIVVYG----TDKVLQQVMEQLQK  162 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg--~Ted~--~~~TIVv~g----de~~ieQI~kQLeK  162 (514)
                      +|.|...|+||+|.+|+..|++-|++|.+-.++  .-.+.  +.|-+...|    |+...+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            588999999999999999999999999998887  33332  235554334    44556666666644

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.19  E-value=0.077  Score=56.28  Aligned_cols=64  Identities=19%  Similarity=0.241  Sum_probs=52.6

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC---CCc--EEEEEEe-cChHHHHHHHHHHhcC
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK---DKA--LFTIVVY-GTDKVLQQVMEQLQKL  163 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te---d~~--~~TIVv~-gde~~ieQI~kQLeKL  163 (514)
                      ...|.|.+.|+||+|++|+.+++.-+.||.+++.....   +.+  .+.+++. .+.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            46999999999999999999999999999999986431   223  3555555 4778899999999885

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.12  E-value=0.082  Score=44.55  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEE-Eec----ChHHHHHHHHHHhcC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIV-VYG----TDKVLQQVMEQLQKL  163 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIV-v~g----de~~ieQI~kQLeKL  163 (514)
                      ++.|...|+||.|.+|+..|++-|++|.+-.++...+...  |-|. ..|    ++...+.+.+.|.+.
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999998887655433  4443 234    566677888777654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=95.01  E-value=0.083  Score=56.15  Aligned_cols=66  Identities=20%  Similarity=0.357  Sum_probs=54.2

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee----ecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG----HAETEGLSRITTVVPAT-DESISKLMQQLYKL  409 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg----~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KL  409 (514)
                      ++..|.+.+.|+||.|.+++.+|...|.||.++...    +. ..+...+++.++.. .+..++|.+.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            367899999999999999999999999999999876    33 35567788888864 35567999998764

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.00  E-value=0.023  Score=54.95  Aligned_cols=72  Identities=25%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC----CeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE----GLSRITTVVPA-TDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~----~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV  415 (514)
                      .|.+.+-++||||++++++.+|.++|+||++|..-.--.+    .+-.+.|.+.- -.-.+.++..+++.|-|=+.|
T Consensus        92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v  168 (176)
T COG2716          92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNV  168 (176)
T ss_pred             eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcc
Confidence            5788999999999999999999999999999987643332    33344444431 233577777777766554444

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=94.97  E-value=0.054  Score=55.48  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecCh--HHHHHHHHHHhc
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTD--KVLQQVMEQLQK  162 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde--~~ieQI~kQLeK  162 (514)
                      +|++.-.|+||+.++||++++++|.||..++.-...+.++  |.+.++.++  ...+++...|+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            6889999999999999999999999999999877655565  555565433  235555555544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=94.97  E-value=0.1  Score=54.52  Aligned_cols=65  Identities=15%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeee---cCCCc--EEEEEEec-ChHHHHHHHHHHhcC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGL---NKDKA--LFTIVVYG-TDKVLQQVMEQLQKL  163 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~---Ted~~--~~TIVv~g-de~~ieQI~kQLeKL  163 (514)
                      +.++|.+.+.|+||.|.+++.++++.|.||.++....   +.+.+  .+++.++. +.+..++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            5569999999999999999999999999999997662   21223  36777764 467788898888764

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=94.95  E-value=0.042  Score=56.55  Aligned_cols=40  Identities=15%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             cccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEee
Q 047033           95 RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVG  134 (514)
Q Consensus        95 ~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg  134 (514)
                      +++|.+++|++.-.|+||+.++||++++..|.||..++.-
T Consensus         4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            3457788999999999999999999999999999999986

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=94.94  E-value=0.32  Score=50.15  Aligned_cols=78  Identities=18%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeee-cCCCC-eeEEEEEEeC----ChHHHHHHHHHHhcCccE-
Q 047033          340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGH-AETEG-LSRITTVVPA----TDESISKLMQQLYKLIDL-  412 (514)
Q Consensus       340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~-Te~~~-iSRiTIVV~g----de~~ieQI~kQL~KLidV-  412 (514)
                      +.|.+++|++.-.|+||+.++||++++..|.||..++.-. +.... +.|+.++..+    +...+++-.+++-+-.++ 
T Consensus         5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCe
Confidence            3477789999999999999999999999999999998852 22233 4455555332    233444444444444443 


Q ss_pred             EEEEe
Q 047033          413 HEVRD  417 (514)
Q Consensus       413 ikV~d  417 (514)
                      ++++.
T Consensus        85 ~~i~~   89 (289)
T PRK13010         85 WAIHP   89 (289)
T ss_pred             EEEec
Confidence            34444

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.94  E-value=0.11  Score=43.86  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=47.0

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C----ChHHHHHHHHHHhcC
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A----TDESISKLMQQLYKL  409 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g----de~~ieQI~kQL~KL  409 (514)
                      .+.|...|+||+|.+|+..|++-||+|.+-.++...+. ..-.-.+.+  |    ++...+.|.+.|.+.
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ger-a~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDD-AHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCce-EEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999888775443 333333332  3    555677777777553

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.87  E-value=0.039  Score=60.69  Aligned_cols=72  Identities=18%  Similarity=0.358  Sum_probs=57.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      .-|+|-+.-.|+||++.+|+.++.+.++||-++.++..+..+.  |.|.++  +..-+.++++|.++.+|.+|..+
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence            3467877778999999999999999999999999998876554  555554  44456777888888888887654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08198 threonine dehydratase; Provisional

Probab=94.82  E-value=0.14  Score=54.07  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=56.8

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEeC-ChHHHHHHHHHHhcC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVPA-TDESISKLMQQLYKL  409 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~g-de~~ieQI~kQL~KL  409 (514)
                      +..++++.+.|+||.|.++..+++..|.||.+++..+..   ..+...++++++. +.+.+++|++.|++.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            457999999999999999999999999999999987532   3477888888884 556789999999765

>PRK06382 threonine dehydratase; Provisional

Probab=94.70  E-value=0.12  Score=54.87  Aligned_cols=65  Identities=23%  Similarity=0.262  Sum_probs=51.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEee----ecCC-CcEEEEEEecC-hHHHHHHHHHHhcC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVG----LNKD-KALFTIVVYGT-DKVLQQVMEQLQKL  163 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg----~Ted-~~~~TIVv~gd-e~~ieQI~kQLeKL  163 (514)
                      +...|.+.+.|+||.|.+++.+|...|.||.++...    +.++ ...+++.++.. .+..++|.+.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            567899999999999999999999999999999876    3322 23477777653 45567888888764

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.69  E-value=1.6  Score=42.05  Aligned_cols=138  Identities=22%  Similarity=0.237  Sum_probs=96.5

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC-hHHHHHHHHHHhcC-ccEEEEEec
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT-DESISKLMQQLYKL-IDLHEVRDL  418 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd-e~~ieQI~kQL~KL-idVikV~dl  418 (514)
                      +|+-++.|...|+||=|-++..=.+.-|-||-++.=..... -+--+.-|++.+| ++...++.+-+++. +.++++...
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~   82 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA   82 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence            57899999999999999999999999999998876655433 4566788888887 66677777777332 333333222


Q ss_pred             CCchhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEec----------CCEEEEEEecCHHHHHHHHHHhcc
Q 047033          419 THLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVS----------DHTITLELTGDLDKMVALQRLLEP  482 (514)
Q Consensus       419 t~~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs----------~~si~iE~TG~~~KIdafi~lL~p  482 (514)
                        ..-.+-...||-=-+...-+.-|-.+-.+-+|.++|++          .--++++..| .+|++..++.|+.
T Consensus        83 --~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e  153 (170)
T COG2061          83 --RLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE  153 (170)
T ss_pred             --CcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence              22233345566544555567778888889999999984          2236666665 4666666666653

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=94.52  E-value=0.12  Score=42.73  Aligned_cols=56  Identities=14%  Similarity=0.319  Sum_probs=45.9

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHHhcCccE
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQLYKLIDL  412 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL~KLidV  412 (514)
                      ..+.||++.+|.+.|++.|.|++-+..++      ..++++++.++     +.+++|.+.|+++-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            45789999999999999999999996522      66999998654     3799999999995443

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=94.50  E-value=0.15  Score=37.74  Aligned_cols=53  Identities=26%  Similarity=0.448  Sum_probs=39.8

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHH
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL  406 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL  406 (514)
                      +.|.||++.++...+.+.|.||+.++.++... +.-.++++++  ++..++..+.|
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~--~~~~~~~~~~l   60 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVP--KSDLEKALAIL   60 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEe--HHHHHHHHHHh
Confidence            57899999999999999999999998876543 3355777776  34455554443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=94.44  E-value=0.096  Score=53.68  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHhc
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLYK  408 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~K  408 (514)
                      ++|++.-.|+||+.++||++++.+|.||..++.-.....+.--|.+.++.++  ...+++...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            3789999999999999999999999999999887765556555666665432  234555544444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.42  E-value=0.075  Score=58.51  Aligned_cols=73  Identities=22%  Similarity=0.339  Sum_probs=60.0

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      -|+|-+.-.|+||++.+|+.++...++||.++.++..+..+..=|.|-++  +..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence            47887788999999999999999999999999999987766655555555  45557788888888888888765

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.34  E-value=0.11  Score=40.20  Aligned_cols=54  Identities=22%  Similarity=0.390  Sum_probs=37.7

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHHhc
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      +.|+||++.++...+++.|+||+.+..+..... ..+++++..  +..+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998876654332 246677654  233444444443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.33  E-value=0.22  Score=41.75  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=56.5

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-C-hHHHHHHHHHHhcCccEEEEEecCCch
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-T-DESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-d-e~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      .++.+.+.|+||-|.+++.+++  |.||..+.-..... +-.++.++++. + .+.++++.+.|++.=  .++.+.++.+
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~   76 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE   76 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence            4688999999999999999999  77888766665443 56778887774 3 578999999988743  2455667665


Q ss_pred             hh
Q 047033          423 FA  424 (514)
Q Consensus       423 ~V  424 (514)
                      ..
T Consensus        77 ~~   78 (85)
T cd04906          77 LA   78 (85)
T ss_pred             HH
Confidence            44

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=94.32  E-value=0.22  Score=51.48  Aligned_cols=75  Identities=23%  Similarity=0.387  Sum_probs=60.9

Q ss_pred             cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEE
Q 047033          341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV  415 (514)
                      +..|.+|.+.+.|+||.|-++.+.|+.||+|+..|..-|+-. .+-..+-|=+.|  ++..+.+..+.|.+.-..+++
T Consensus       191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            456889999999999999999999999999999999999874 555566666665  555688888888877665555

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.25  E-value=0.22  Score=39.90  Aligned_cols=59  Identities=15%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEec-ChHHHHHHHHHHhc
Q 047033          103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYG-TDKVLQQVMEQLQK  162 (514)
Q Consensus       103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~g-de~~ieQI~kQLeK  162 (514)
                      +++.+.++||-|.++..+++. |.||-.+.-.... +.+.++++++. +.+.++++..+|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467889999999999999999 9999999876643 22446666653 45788999998876

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.20  E-value=0.13  Score=53.69  Aligned_cols=67  Identities=19%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEecChHHHHHHHHHHhcCcce
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNV  166 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdV  166 (514)
                      .-|.+.|.|.|+||.|.++++++.+.|+||+.+.+-++.+.  +.+.|.+.. ++..++..+.|++-..+
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~  357 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWTY  357 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCcc
Confidence            56899999999999999999999999999999999876433  567888764 34566666666665443

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=94.20  E-value=0.17  Score=41.91  Aligned_cols=57  Identities=14%  Similarity=0.329  Sum_probs=44.6

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHHhcCccee
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQLQKLVNVL  167 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQLeKLvdVi  167 (514)
                      ..+.||++.++.+.|++.|+|++-++.+.    .-+++++..++     +.++++++.|+++-+|.
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v~   72 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRVK   72 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEEE
Confidence            46789999999999999999999997522    44777776543     37899999999955443

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=94.12  E-value=0.18  Score=37.40  Aligned_cols=52  Identities=19%  Similarity=0.343  Sum_probs=37.7

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHH
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQL  160 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQL  160 (514)
                      +.|.||++.|+...|++.|+||+.++.++.... ..+++++..  +..++..+.|
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~l   60 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAIL   60 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHHh
Confidence            578999999999999999999999988764432 236666653  3344544443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=94.10  E-value=0.21  Score=40.80  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=44.3

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHHhc
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQLYK  408 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL~K  408 (514)
                      ..+.||++.||...+++.|+|++.++.++      .+++++++.++     +.+..|.+-|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            46789999999999999999999886422      67999998654     588999999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.06  E-value=0.12  Score=40.01  Aligned_cols=55  Identities=25%  Similarity=0.393  Sum_probs=39.2

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      +.|+||++.++...+++.|.||+.+..+..+.. -.+++++++.  +..+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998876654332 2457777763  334444444444

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.00  E-value=0.15  Score=53.32  Aligned_cols=65  Identities=25%  Similarity=0.345  Sum_probs=49.0

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC--CCeeEEEEEEeCChHHHHHHHHHHhcCcc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET--EGLSRITTVVPATDESISKLMQQLYKLID  411 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~--~~iSRiTIVV~gde~~ieQI~kQL~KLid  411 (514)
                      -|.+.|.+.|+||+|.+|+++..+.|+||+.|.+-++-.  .++-|+++-   +++..++..+.|.+-..
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~  356 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK---NEEDRERAKALLEEFWT  356 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC---CHHHHHHHHHHHHhcCc
Confidence            499999999999999999999999999999999976533  355555544   34455555555555443

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.97  E-value=0.26  Score=50.96  Aligned_cols=73  Identities=22%  Similarity=0.405  Sum_probs=58.0

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEe--cChHHHHHHHHHHhcCcceeeEe
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVY--GTDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~--gde~~ieQI~kQLeKLvdVikV~  170 (514)
                      ..+..|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . |-|-+.  .++..+++..+-|.+.-..+++.
T Consensus       192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~kil  269 (279)
T COG0077         192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKIL  269 (279)
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEEE
Confidence            468899999999999999999999999999999999998753 3 2 444454  45667888888888776655553

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=93.85  E-value=0.31  Score=53.47  Aligned_cols=80  Identities=20%  Similarity=0.276  Sum_probs=64.2

Q ss_pred             CCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCe--eEEEEEEeCChHHHHHHHHHHhcCccEEE
Q 047033          337 DDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGL--SRITTVVPATDESISKLMQQLYKLIDLHE  414 (514)
Q Consensus       337 ~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~i--SRiTIVV~gde~~ieQI~kQL~KLidVik  414 (514)
                      .+..+..+-+|.+.+.|+||.|.++..+|..+|+|+..|.--|+....-  ..+-|-++|+...+.++++.|.+..+.++
T Consensus        24 ~~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~  103 (464)
T TIGR01270        24 DEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHE  103 (464)
T ss_pred             ccCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccce
Confidence            3445555667777789999999999999999999999999988754432  35556677888899999999999888766


Q ss_pred             EE
Q 047033          415 VR  416 (514)
Q Consensus       415 V~  416 (514)
                      |.
T Consensus       104 ~~  105 (464)
T TIGR01270       104 VS  105 (464)
T ss_pred             ec
Confidence            64

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.68  E-value=0.055  Score=45.74  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=46.9

Q ss_pred             EEEEEeC-chhHHHHHHHHHhccCceeeeEEeeecCC---------C-cEEEEEEecChHHHHHHHHHHhcCc
Q 047033          103 ISVFVGD-ESGMINRIAGVFARRGYNIESLAVGLNKD---------K-ALFTIVVYGTDKVLQQVMEQLQKLV  164 (514)
Q Consensus       103 IsvlVeN-~pGVLsRIaglFsRRgyNIeSLtVg~Ted---------~-~~~TIVv~gde~~ieQI~kQLeKLv  164 (514)
                      ++++-.+ ++|.+++|+.+++.+|+||+.+.-= +..         + ..|.+.+.+.+..++.+.++|.++-
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la   73 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA   73 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            5677788 8999999999999999999988762 211         1 1367778877777888888887653

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08198 threonine dehydratase; Provisional

Probab=93.60  E-value=0.32  Score=51.35  Aligned_cols=66  Identities=12%  Similarity=0.205  Sum_probs=52.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC---CCc--EEEEEEec-ChHHHHHHHHHHhcC
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK---DKA--LFTIVVYG-TDKVLQQVMEQLQKL  163 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te---d~~--~~TIVv~g-de~~ieQI~kQLeKL  163 (514)
                      -+..++++.+.|+||.|.++..+++..|.||.+++..+..   ..+  .++|+++. +.+.++++++.|++.
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            3567999999999999999999999999999999987532   122  36666663 456788999999765

>PRK12483 threonine dehydratase; Reviewed

Probab=93.48  E-value=1.8  Score=48.22  Aligned_cols=133  Identities=17%  Similarity=0.216  Sum_probs=93.8

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHH-HHHHHHHhcCccEEEEEecCC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESI-SKLMQQLYKLIDLHEVRDLTH  420 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~i-eQI~kQL~KLidVikV~dlt~  420 (514)
                      +++.+.+...++||-|.+++.++..+  ||..+.--.. ..+-..+.++++. +.+.. ++|++.|++.=  .++.|+++
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd  418 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA-DAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD  418 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec-CCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence            46899999999999999999999988  9998877653 3334667777763 33454 99999997743  46778888


Q ss_pred             chh---------------hheeeEEEEEecCcccHHHHHHHHHhcCc--EEEEec-----CCE----EEEEEecCHHHHH
Q 047033          421 LPF---------------AERELMLIKVAVNTTARRDVLDIATIFRA--KAVDVS-----DHT----ITLELTGDLDKMV  474 (514)
Q Consensus       421 ~~~---------------V~REL~LIKV~~~~~~R~eI~~la~iFra--kIVDvs-----~~s----i~iE~TG~~~KId  474 (514)
                      .+.               +.||- |+.|..+ +.....++.++.++-  .|-..+     .+.    +=|++.  .++.+
T Consensus       419 ne~~k~h~r~~~g~~~~~~~~E~-~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~  494 (521)
T PRK12483        419 DELAKLHIRHMVGGRAPLAHDER-LFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERA  494 (521)
T ss_pred             CHHHHHHHHhccCCCCCCCCceE-EEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHH
Confidence            765               45664 6777665 455677778887765  232221     111    236763  36778


Q ss_pred             HHHHHhccCC
Q 047033          475 ALQRLLEPYG  484 (514)
Q Consensus       475 afi~lL~pyG  484 (514)
                      .|++.|+..|
T Consensus       495 ~~~~~l~~~g  504 (521)
T PRK12483        495 ALDAALAALG  504 (521)
T ss_pred             HHHHHHHHCC
Confidence            9999998776

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.44  E-value=0.079  Score=44.78  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             EEEEEeC-cchHHHHHHHHhhccCceeeeEeeee-------cCCCCeeEEEEEEeCChHHHHHHHHHHhcCc
Q 047033          347 LSMLVND-SPGVLNIVTGVFARRGYNIQSLAVGH-------AETEGLSRITTVVPATDESISKLMQQLYKLI  410 (514)
Q Consensus       347 LSIlVeN-~pGVL~RItgLFsRRGyNIeSLtVg~-------Te~~~iSRiTIVV~gde~~ieQI~kQL~KLi  410 (514)
                      ++++-.+ ++|.+++|+.+++.+|.||+.+.-=.       +..+...-|.+.+.|.+...+.+.++|.++-
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la   73 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA   73 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            6788888 99999999999999999999887621       1122344567777887778888888877653

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.40  E-value=0.19  Score=41.70  Aligned_cols=56  Identities=16%  Similarity=0.365  Sum_probs=44.2

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH----HHH-HHHHHHhcCccE
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE----SIS-KLMQQLYKLIDL  412 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~----~ie-QI~kQL~KLidV  412 (514)
                      +.+.||++.+|...|++.|.||+-++.++      ..++++++.++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            56889999999999999999999997522      569999986653    344 688888885444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.35  E-value=0.63  Score=48.99  Aligned_cols=127  Identities=12%  Similarity=0.137  Sum_probs=86.4

Q ss_pred             EEEEEE---EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033          345 HTLSML---VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       345 htLSIl---VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      ..+++.   +.|+||++.|+...|.+.|.||+.++.+.++    ..++++++  ++..+++.+.|++...-....    .
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~--~~d~~~a~~~L~~~~~~~~~~----~  330 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVD--ETDADEAVRALKDQSGAAGLD----R  330 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEe--HHHHHHHHHHHHHHHHhcCCc----e
Confidence            356666   7899999999999999999999999887654    34788886  344666666676653211110    1


Q ss_pred             hhhheeeEEEEEecCcc-----cHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          422 PFAERELMLIKVAVNTT-----ARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       422 ~~V~REL~LIKV~~~~~-----~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      -.+++.+++|.|--..-     .-..+++.....+.+|.-++.....+-+.=+.+..+..++.|.
T Consensus       331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh  395 (401)
T TIGR00656       331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLH  395 (401)
T ss_pred             EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence            12567788888754331     2357788888888888888766555555556666666666654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.32  E-value=0.14  Score=54.39  Aligned_cols=51  Identities=25%  Similarity=0.379  Sum_probs=40.7

Q ss_pred             eEEEEEEEe-CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC
Q 047033          344 SHTLSMLVN-DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT  395 (514)
Q Consensus       344 khtLSIlVe-N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd  395 (514)
                      .|.|.+.+. |+||+|.+|+++|+++|+||.+|....+....+- +-|-+.+.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~  346 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG  346 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence            589999995 9999999999999999999999999554443333 66666643

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.25  E-value=0.37  Score=51.53  Aligned_cols=71  Identities=17%  Similarity=0.226  Sum_probs=55.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV  169 (514)
                      .+-.|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+... + + |=|-+.|  ++..+++..++|++.-.-++|
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~kv  371 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSLKV  371 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEEE
Confidence            36677788899999999999999999999999999988765 2 2 4455555  456788888898886553333

>PRK11898 prephenate dehydratase; Provisional

Probab=93.11  E-value=0.47  Score=48.60  Aligned_cols=68  Identities=21%  Similarity=0.357  Sum_probs=51.6

Q ss_pred             eEEEEEEEEeCc-hhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcce
Q 047033           99 RRHTISVFVGDE-SGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNV  166 (514)
Q Consensus        99 ~~h~IsvlVeN~-pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdV  166 (514)
                      .+-.|.+.+.|+ ||.|.++.+.|+++|+|+.+|---|.... . + +=|-++|  ++..++++++.|++...-
T Consensus       195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~~  268 (283)
T PRK11898        195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGED  268 (283)
T ss_pred             CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcCc
Confidence            456777778775 99999999999999999999998887543 2 2 3344444  445789999999886553

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.11  E-value=0.43  Score=51.08  Aligned_cols=72  Identities=17%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC--hHHHHHHHHHHhcCccEEEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT--DESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd--e~~ieQI~kQL~KLidVikV  415 (514)
                      +-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+... +-..+-|=+.|+  +..+++..++|++.-.-++|
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~kv  371 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSLKV  371 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEEE
Confidence            5677777899999999999999999999999999988754 555666667774  45688999998886553333

>PRK08818 prephenate dehydrogenase; Provisional

Probab=92.91  E-value=0.27  Score=52.39  Aligned_cols=51  Identities=25%  Similarity=0.384  Sum_probs=40.2

Q ss_pred             eEEEEEEEEe-CchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEecC
Q 047033           99 RRHTISVFVG-DESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVYGT  149 (514)
Q Consensus        99 ~~h~IsvlVe-N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~gd  149 (514)
                      .-+.|.+.+. |+||.|.+|+++|+++|+||.+|....+..... +-|.+.+.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~  346 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPG  346 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEecc
Confidence            4689999995 999999999999999999999999954443332 55655543

>PRK12483 threonine dehydratase; Reviewed

Probab=92.91  E-value=2.3  Score=47.34  Aligned_cols=132  Identities=15%  Similarity=0.240  Sum_probs=86.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEe--cChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDLSNE  175 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dlt~~  175 (514)
                      +++.+.+.+.++||-|.+++.++..+  ||..+.--..... ..+.++++  +.+...++|+++|++.=  +++.++++.
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn  419 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD  419 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence            67899999999999999999999988  9998876542222 33555554  33433499999997743  578888876


Q ss_pred             hhH---------------HhheeeEEEecCccccccccccccccchhhHHHHHHhcCCE--EEEe-------cCCEE--E
Q 047033          176 PQV---------------ERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAK--IVDI-------SEYSL--T  229 (514)
Q Consensus       176 ~~V---------------~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~ak--VVDv-------s~~s~--~  229 (514)
                      +..               .||- |+.|..+ |.....            .+.++.++.+  |-..       ....+  =
T Consensus       420 e~~k~h~r~~~g~~~~~~~~E~-~~~v~iP-E~pGa~------------~~f~~~l~~~~niTeF~YR~~~~~~a~v~vg  485 (521)
T PRK12483        420 ELAKLHIRHMVGGRAPLAHDER-LFRFEFP-ERPGAL------------MKFLSRLGPRWNISLFHYRNHGAADGRVLAG  485 (521)
T ss_pred             HHHHHHHHhccCCCCCCCCceE-EEEEEcC-CCCcHH------------HHHHHHhCCCcceeeeeecCCCCCceEEEEE
Confidence            653               3442 5555554 344444            6667766652  2221       11112  2


Q ss_pred             EEEeCChhHHHHHHHHhccCC
Q 047033          230 IEVTGDPGKMVAVQRNLSKFG  250 (514)
Q Consensus       230 iEvTG~~~kIdafi~~L~~fG  250 (514)
                      ||+.  .++.++|++.|+..|
T Consensus       486 i~~~--~~~~~~~~~~l~~~g  504 (521)
T PRK12483        486 LQVP--EDERAALDAALAALG  504 (521)
T ss_pred             EeeC--hhHHHHHHHHHHHCC
Confidence            5663  377788999998766

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=92.85  E-value=0.39  Score=46.21  Aligned_cols=72  Identities=19%  Similarity=0.348  Sum_probs=57.5

Q ss_pred             ceEEEEEEEE--eCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033           98 VRRHTISVFV--GDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED  171 (514)
Q Consensus        98 ~~~h~IsvlV--eN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d  171 (514)
                      +-.++|.++.  .+.||++..|+++.+.||++|..+-....|  ++.++||++++  .....++.||.|+--|.+|.-
T Consensus        91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I  166 (167)
T COG2150          91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI  166 (167)
T ss_pred             cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence            4567888887  468999999999999999999988777543  45679999865  345578889999988888763

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.83  E-value=0.85  Score=38.25  Aligned_cols=75  Identities=17%  Similarity=0.256  Sum_probs=54.8

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEec-C-hHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYG-T-DKVLQQVMEQLQKLVNVLKVEDLSNEPQ  177 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~g-d-e~~ieQI~kQLeKLvdVikV~dlt~~~~  177 (514)
                      .++.+.+.++||-|.+++.+++  |.||..+.-.... +.+.+.++++. + .+.++++++.|++.=  +++.+.++.+.
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~   77 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL   77 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence            4789999999999999999999  7788876666543 33456666553 3 577889998888743  35666777665


Q ss_pred             HH
Q 047033          178 VE  179 (514)
Q Consensus       178 V~  179 (514)
                      ..
T Consensus        78 ~~   79 (85)
T cd04906          78 AK   79 (85)
T ss_pred             HH
Confidence            43

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=92.61  E-value=0.62  Score=47.73  Aligned_cols=68  Identities=21%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             eEEEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChH--HHHHHHHHHhcCcc
Q 047033          344 SHTLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDE--SISKLMQQLYKLID  411 (514)
Q Consensus       344 khtLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~--~ieQI~kQL~KLid  411 (514)
                      +-.|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|... +.-..+-+=++|+..  .++++++.|++.-.
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            56777778775 9999999999999999999999988754 334455555666444  78999999988654

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=92.56  E-value=0.32  Score=40.19  Aligned_cols=56  Identities=11%  Similarity=0.239  Sum_probs=44.7

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--H-HHHHHHHHHhcCccE
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--E-SISKLMQQLYKLIDL  412 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~-~ieQI~kQL~KLidV  412 (514)
                      ....||++.+|.+.|++.|.|++-+..++      ..++++++.++  + .++.|.+-|+|+-+|
T Consensus        11 m~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          11 KSLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             CccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            35579999999999999999999997522      56899998543  3 788999999995433

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>PLN02550 threonine dehydratase

Probab=92.23  E-value=2.9  Score=47.41  Aligned_cols=134  Identities=13%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      +++.+.+.+-++||-|.+++.++..+  ||..+.--. .+.+-.++.+.++ -+.+.+++|+..|++.=  .++.|+++.
T Consensus       416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            45889999999999999999999987  999888776 3444567777776 36778999999998854  578889887


Q ss_pred             hhh--------------heeeEEEEEecCcccHHHHHHHHHhcCcE--EEEe----cC-----CEEEEEEecCHHHHHHH
Q 047033          422 PFA--------------ERELMLIKVAVNTTARRDVLDIATIFRAK--AVDV----SD-----HTITLELTGDLDKMVAL  476 (514)
Q Consensus       422 ~~V--------------~REL~LIKV~~~~~~R~eI~~la~iFrak--IVDv----s~-----~si~iE~TG~~~KIdaf  476 (514)
                      +..              .||. |+.|..+ +......+.++.++-+  |-..    +.     =.+=||+.  .++++.|
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E~-l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l  566 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDEL-LYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEF  566 (591)
T ss_pred             hHHhhhhhheeccccccCceE-EEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHH
Confidence            654              3443 5666654 3345667777776652  2221    11     12347775  4788899


Q ss_pred             HHHhccCCc
Q 047033          477 QRLLEPYGI  485 (514)
Q Consensus       477 i~lL~pyGI  485 (514)
                      ++.|+..|.
T Consensus       567 ~~~l~~~gy  575 (591)
T PLN02550        567 KSRANALGY  575 (591)
T ss_pred             HHHHHHcCC
Confidence            999988774

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=92.21  E-value=0.39  Score=39.85  Aligned_cols=56  Identities=13%  Similarity=0.386  Sum_probs=42.2

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH----HHH-HHHHHHhcCcce
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK----VLQ-QVMEQLQKLVNV  166 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~----~ie-QI~kQLeKLvdV  166 (514)
                      +.+.||++.+|...|++.|+||+-++.+.    .-+++++..++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522    447777775543    344 577788885444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=92.03  E-value=0.47  Score=36.77  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=39.7

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      .+.||++.|+...+++.|.|++.++.+..+    .++.++++.+  ..++..+.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~--~~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK--DAVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence            368999999999999999999999876643    6788888853  34555665655

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=92.00  E-value=0.68  Score=34.94  Aligned_cols=51  Identities=22%  Similarity=0.396  Sum_probs=38.7

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      ..+.||++.|+.+.+++.|.|++.++..  +    .+++++++.  ...+++.+-|+|.
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~--~d~~~~~~~l~~~   60 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDE--DDAEKAVRALHEA   60 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeH--HHHHHHHHHHHHH
Confidence            4577999999999999999999999842  1    568888883  4455556666554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=91.99  E-value=0.66  Score=37.86  Aligned_cols=53  Identities=13%  Similarity=0.367  Sum_probs=43.0

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHHhc
Q 047033          106 FVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQLQK  162 (514)
Q Consensus       106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQLeK  162 (514)
                      -..+.||++.|+...|++.|+|++.++.+    ...+++++..++     ..+..+.+-|+|
T Consensus        10 ~l~~~~g~~~~if~~L~~~~I~v~~i~~s----~~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          10 RMLGAHGFLAKVFEIFAKHGLSVDLISTS----EVSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCCccHHHHHHHHHHHcCCeEEEEEcC----CcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            35678999999999999999999988632    245777777544     588899999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PLN02317 arogenate dehydratase

Probab=91.97  E-value=0.76  Score=49.45  Aligned_cols=72  Identities=18%  Similarity=0.223  Sum_probs=54.3

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC---------------CeeEEEEEEeCC--hHHHHHHHHHH
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE---------------GLSRITTVVPAT--DESISKLMQQL  406 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~---------------~iSRiTIVV~gd--e~~ieQI~kQL  406 (514)
                      |-.|.+.++|+||.|.++..+|+.||+|+..|.--|.-..               .-..+-|=++|.  +..+++.++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            5667777799999999999999999999999998886544               223444555565  66788888888


Q ss_pred             hcCccEEEE
Q 047033          407 YKLIDLHEV  415 (514)
Q Consensus       407 ~KLidVikV  415 (514)
                      ++.-.-++|
T Consensus       363 ~~~~~~lrv  371 (382)
T PLN02317        363 QEFATFLRV  371 (382)
T ss_pred             HHhcCeEEE
Confidence            876554333

>PRK03059 PII uridylyl-transferase; Provisional

Probab=91.90  E-value=0.46  Score=55.54  Aligned_cols=67  Identities=19%  Similarity=0.307  Sum_probs=51.2

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC----ChHHHHHHHHHHhcCccE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA----TDESISKLMQQLYKLIDL  412 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g----de~~ieQI~kQL~KLidV  412 (514)
                      ...|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+-- ++.|.+    +++..++|.+.|.+.++|
T Consensus       786 ~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~D-vF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        786 YYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVED-TFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             EEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEE-EEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            4589999999999999999999999999999888877 333333 333332    456678888888776654

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=91.68  E-value=0.52  Score=36.45  Aligned_cols=49  Identities=16%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHH
Q 047033          108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQL  160 (514)
Q Consensus       108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQL  160 (514)
                      .+++|+..++..+|++.|+|++-++.+.    .-+++++..++  +.++.+++.|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence            4679999999999999999999996422    45888887655  6777777765

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=91.68  E-value=0.46  Score=36.72  Aligned_cols=49  Identities=14%  Similarity=0.367  Sum_probs=39.9

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHH
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQL  406 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL  406 (514)
                      .++||+..+|...|.+.|.|++-++.++      -.+++++..++  +.++.+++.|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence            4679999999999999999999996522      56999998766  6777777765

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK06635 aspartate kinase; Reviewed

Probab=91.66  E-value=0.78  Score=48.35  Aligned_cols=124  Identities=19%  Similarity=0.232  Sum_probs=77.7

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEecChHHHHHHHHHHhcC---cceeeEeecCChhhHHhhe
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVYGTDKVLQQVMEQLQKL---VNVLKVEDLSNEPQVEREL  182 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~gde~~ieQI~kQLeKL---vdVikV~dlt~~~~V~REL  182 (514)
                      ..|+||++.|+...|.+.|+||+.++.+.+++ ..-+++++..  ...++..+.|+++   +.+..+       .+.+.+
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~i  340 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDDI  340 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCCe
Confidence            67899999999999999999999998876554 3457777754  3345566666663   222112       234567


Q ss_pred             eeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033          183 MLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS  247 (514)
Q Consensus       183 ~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~  247 (514)
                      +++.|.... ...+.+        --.|++....++..|.-++....-+-++=+.+..+..++.|.
T Consensus       341 a~isvvG~~~~~~~g~--------~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh  398 (404)
T PRK06635        341 AKVSVVGVGMRSHPGV--------AAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH  398 (404)
T ss_pred             EEEEEECCCCCCCchH--------HHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence            888885422 222222        013477777788888877544344444444555666666654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=91.60  E-value=0.56  Score=54.86  Aligned_cols=68  Identities=19%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec----ChHHHHHHHHHHhcCcce
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG----TDKVLQQVMEQLQKLVNV  166 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g----de~~ieQI~kQLeKLvdV  166 (514)
                      ....|.|+..|+||+|.+|+++|++.|+||.+-.+..+.+...=++.|.+    +++..+++.+.|.+.++|
T Consensus       785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            35689999999999999999999999999999888877222221233332    456678888888776665

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=91.46  E-value=1.7  Score=43.84  Aligned_cols=73  Identities=12%  Similarity=0.155  Sum_probs=60.3

Q ss_pred             eEEEEEEEeCcch--HHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEE--eC-ChHHHHHHHHHHhcCccEEEEE
Q 047033          344 SHTLSMLVNDSPG--VLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVV--PA-TDESISKLMQQLYKLIDLHEVR  416 (514)
Q Consensus       344 khtLSIlVeN~pG--VL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV--~g-de~~ieQI~kQL~KLidVikV~  416 (514)
                      .|++++.+.++++  +++++...+...+|.+.++.+.+.++++-..|+..+  .+ ++..+++++.+|.....|.+|.
T Consensus       142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            6788999888665  699999999999999999999887666644455444  43 5788999999999999999886

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=91.43  E-value=1.7  Score=45.86  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             EEEEEE---EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033          101 HTISVF---VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ  177 (514)
Q Consensus       101 h~Isvl---VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~  177 (514)
                      ..+++.   +.|+||++.|+...|.+.|+||+.++.+.++  .-+++++..  +..+++.+.|++...-....    .=.
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~i~  332 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLD----RVE  332 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----eEE
Confidence            356666   7899999999999999999999999876544  337777753  34556666666643221111    112


Q ss_pred             HHhheeeEEEecCc-cccccccccccccchh-hHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033          178 VERELMLIKVNADP-KFRAEIFLFPCLGVHL-QIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS  247 (514)
Q Consensus       178 V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~-~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~  247 (514)
                      +++.+++|-|-... .++..+         + .+++.....+-.|.-++....-+-+.=+.+..+..++.|.
T Consensus       333 ~~~~~a~IsvVG~~~~~~~g~---------~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh  395 (401)
T TIGR00656       333 VEEGLAKVSIVGAGMVGAPGV---------ASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLH  395 (401)
T ss_pred             EeCCeEEEEEECCCcccCccH---------HHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence            45678887775432 233333         1 2366667777888888766555555555666666666665

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=91.34  E-value=0.61  Score=38.54  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--H-HHHHHHHHHhcCcce
Q 047033          108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--K-VLQQVMEQLQKLVNV  166 (514)
Q Consensus       108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~-~ieQI~kQLeKLvdV  166 (514)
                      -.+||++.+|.+.|++.|+|++-+..+.    .-+++++..++  + .++.|++-|+|+-+|
T Consensus        12 ~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          12 SLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             ccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            4569999999999999999999997522    44677766432  3 788999999885443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>PRK05092 PII uridylyl-transferase; Provisional

Probab=91.27  E-value=0.67  Score=54.54  Aligned_cols=66  Identities=15%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc-E--EEEEE-e----cChHHHHHHHHHHhcCcc
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA-L--FTIVV-Y----GTDKVLQQVMEQLQKLVN  165 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~--~TIVv-~----gde~~ieQI~kQLeKLvd  165 (514)
                      ....|.|...|+||+|.+|+++|++.|+||.+..+. |.+.. .  |.|.- +    .++...+.|.+.|.+.++
T Consensus       842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~-T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA-TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE-EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            346899999999999999999999999999999998 44432 2  44432 1    234457778888876653

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=91.14  E-value=0.71  Score=35.46  Aligned_cols=51  Identities=24%  Similarity=0.452  Sum_probs=39.1

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      .+.||++.||...+++.|.|++.++-+..+    -+++++++.  ...++..+.|++
T Consensus        12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~--~~~~~~~~~lh~   62 (66)
T cd04922          12 AGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDE--DDATKALRAVHE   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeH--HHHHHHHHHHHH
Confidence            467999999999999999999998776533    678888884  334555555554

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK06635 aspartate kinase; Reviewed

Probab=91.00  E-value=1.9  Score=45.45  Aligned_cols=121  Identities=19%  Similarity=0.255  Sum_probs=80.1

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC---ccEEEEEecCCchhhhee
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL---IDLHEVRDLTHLPFAERE  427 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL---idVikV~dlt~~~~V~RE  427 (514)
                      ..|+||+|.||...+.+.|+||+.++.+.+++ +...++++++.  +..++..+.|+++   +.+..+       .+.+.
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~-~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~  339 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSED-GKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDD  339 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCC-CceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence            67899999999999999999999987775442 24457778763  3455666667663   222112       23556


Q ss_pred             eEEEEEecC-----cccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          428 LMLIKVAVN-----TTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       428 L~LIKV~~~-----~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      ++++.|...     +..-.++++....++.+|.-++.....+-++=+.+..+..++.|.
T Consensus       340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh  398 (404)
T PRK06635        340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH  398 (404)
T ss_pred             eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence            788888432     122357888888888888887644444445555555666666654

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=91.00  E-value=1  Score=49.34  Aligned_cols=67  Identities=13%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT-DESISKLMQQLYKLI  410 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd-e~~ieQI~kQL~KLi  410 (514)
                      +-+|.+.+.|+||.|.+|..+|+.+|+|+..|.--|+... .-..+-|-++|. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            5678888899999999999999999999999999886543 333455556676 478899999998876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=90.94  E-value=0.33  Score=42.59  Aligned_cols=52  Identities=19%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT  395 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd  395 (514)
                      |++..+++.=.|+||+.+.|++++++.|.||.  .++.|-..++-.|-+.|+-+
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIl--disQtvm~~~ftm~~lV~~~   52 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNIL--DISQTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEE--EHHHHHHhhhceeeeEEcCC
Confidence            46889999999999999999999999999996  56777777887788888754

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=90.56  E-value=0.77  Score=35.19  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=39.7

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      .+.||++.++...+++.|.|++-++.+..+    -+++++++.  ...+++.+-|++.
T Consensus        12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~--~~~~~~~~~Lh~~   63 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAE--DDGWAAVKAVHDE   63 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHH
Confidence            467999999999999999999998876643    557788873  3455566666554

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=90.18  E-value=1.2  Score=49.12  Aligned_cols=72  Identities=24%  Similarity=0.253  Sum_probs=58.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--c-E-EEEEEecChHHHHHHHHHHhcCcceeeEe
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--A-L-FTIVVYGTDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~-~-~TIVv~gde~~ieQI~kQLeKLvdVikV~  170 (514)
                      .+-.|.+.+.|+||.|.++..+|+.+|+|+..|---|+...  . . +=|-++|+...++++++.|.+..+.++|.
T Consensus        30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~  105 (464)
T TIGR01270        30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS  105 (464)
T ss_pred             ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence            45577777799999999999999999999999988887543  2 3 44556788888999999999988876664

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=90.16  E-value=0.9  Score=34.89  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=38.9

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      +.+.||++.|+...+++.|.|++.++.+.++    -+++++++.+  ..++..+.|+|
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~--d~~~~~~~lh~   62 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNE--DADKAVKAIYE   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence            3468999999999999999999999876643    5688888843  34444555554

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=90.01  E-value=0.83  Score=38.57  Aligned_cols=52  Identities=17%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--------HHHHHHHHHhc
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--------SISKLMQQLYK  408 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--------~ieQI~kQL~K  408 (514)
                      ..+.||++.+|...|++.|.|++-++.++      ..++++++.++.        .++++...|+|
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd~~~~~~~~~~l~~~~~~~~~   70 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEK   70 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence            45789999999999999999999996522      569999986543        34455555554

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=89.98  E-value=0.78  Score=53.11  Aligned_cols=63  Identities=22%  Similarity=0.355  Sum_probs=46.1

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC---ChHHHHHHHHHHhcC
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA---TDESISKLMQQLYKL  409 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g---de~~ieQI~kQL~KL  409 (514)
                      -.+.|+..|+||++++|+|+|++.|+||.+-.+-.  ..+..=.++.|.+   .....+++.+.|++.
T Consensus       600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~  665 (774)
T PRK03381        600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRA  665 (774)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence            47999999999999999999999999999988864  3444445555543   212246666666654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=89.77  E-value=0.71  Score=53.46  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHA  380 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~T  380 (514)
                      ...|.|...|+||+|.+|+++|+..|+||.+..+...
T Consensus       707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~  743 (774)
T PRK03381        707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL  743 (774)
T ss_pred             eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence            3589999999999999999999999999999998887

>PLN02550 threonine dehydratase

Probab=89.73  E-value=8.3  Score=43.87  Aligned_cols=135  Identities=19%  Similarity=0.288  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLSNE  175 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt~~  175 (514)
                      .+++.+.+.+-++||-|.+++.++..+  ||..+.--.... .+.+.+.++ .+.+.+++|+..|++.=  +++.|+++.
T Consensus       415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            456889999999999999999999987  999887766322 234555554 35678999999998854  688999887


Q ss_pred             hhHHh-------he------eeEEEecCccccccccccccccchhhHHHHHHhcCCE--EEEec-----C-C---EEEEE
Q 047033          176 PQVER-------EL------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAK--IVDIS-----E-Y---SLTIE  231 (514)
Q Consensus       176 ~~V~R-------EL------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~ak--VVDvs-----~-~---s~~iE  231 (514)
                      +...-       |-      +|+.|..+ |....            ..+.++.++.+  |...+     + .   -+=||
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGA------------l~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~  557 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGA------------LMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQ  557 (591)
T ss_pred             hHHhhhhhheeccccccCceEEEEEEec-CcCCH------------HHHHHHhhCCCCceeeEEeecCCCCCccEEEEEe
Confidence            66422       11      13444333 22222            35666666652  11110     0 1   13367


Q ss_pred             EeCChhHHHHHHHHhccCCc
Q 047033          232 VTGDPGKMVAVQRNLSKFGI  251 (514)
Q Consensus       232 vTG~~~kIdafi~~L~~fGI  251 (514)
                      +.  +++++.|++.|+..|.
T Consensus       558 v~--~~e~~~l~~~l~~~gy  575 (591)
T PLN02550        558 VP--PEEMQEFKSRANALGY  575 (591)
T ss_pred             eC--HHHHHHHHHHHHHcCC
Confidence            75  4888899999988774

>PLN02317 arogenate dehydratase

Probab=89.58  E-value=1.6  Score=47.08  Aligned_cols=70  Identities=20%  Similarity=0.366  Sum_probs=52.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC----------------cE-EEEEEecC--hHHHHHHHHHH
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK----------------AL-FTIVVYGT--DKVLQQVMEQL  160 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~----------------~~-~TIVv~gd--e~~ieQI~kQL  160 (514)
                      +-.|.+.++|+||.|.++..+|+.||+|+..|.--|....                .+ |-|-+++.  +..++++++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            5677777899999999999999999999999988776433                12 33444443  66688888888


Q ss_pred             hcCcceeeE
Q 047033          161 QKLVNVLKV  169 (514)
Q Consensus       161 eKLvdVikV  169 (514)
                      ++.-.-++|
T Consensus       363 ~~~~~~lrv  371 (382)
T PLN02317        363 QEFATFLRV  371 (382)
T ss_pred             HHhcCeEEE
Confidence            876554433

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=89.55  E-value=1  Score=52.47  Aligned_cols=135  Identities=16%  Similarity=0.241  Sum_probs=84.5

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC------ChHHHHHHHHHHhcCccEEEEEe
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA------TDESISKLMQQLYKLIDLHEVRD  417 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g------de~~ieQI~kQL~KLidVikV~d  417 (514)
                      ...+.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-+--.-.|.+.      +++..++|.+.|.+.++      
T Consensus       668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~------  741 (850)
T TIGR01693       668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA------  741 (850)
T ss_pred             eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc------
Confidence            457999999999999999999999999999999988877654444444332      12346666666655432      


Q ss_pred             cCCchhhheeeEEEEEecCcccHHHHHHHHHhcCc-EEEEe----cCCEEEEEEecC--HHHHHHHHHHhccCCc-EEEe
Q 047033          418 LTHLPFAERELMLIKVAVNTTARRDVLDIATIFRA-KAVDV----SDHTITLELTGD--LDKMVALQRLLEPYGI-CEVA  489 (514)
Q Consensus       418 lt~~~~V~REL~LIKV~~~~~~R~eI~~la~iFra-kIVDv----s~~si~iE~TG~--~~KIdafi~lL~pyGI-lEva  489 (514)
                        ..... .+ .+.+-...  .|    +. ..|.- .-|.+    +++..++|++|.  |+=+..+-+.|..+|+ ++.+
T Consensus       742 --~~~~~-~~-~~~~~~~~--~~----~~-~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a  810 (850)
T TIGR01693       742 --GLAKD-PD-TISARRAR--RR----RL-QHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSA  810 (850)
T ss_pred             --CCCcc-cc-ccccccCC--cc----cc-cCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEE
Confidence              11000 00 01110000  01    00 12221 11222    456677787776  8889999999999997 7888


Q ss_pred             ecceeE
Q 047033          490 RTGRVA  495 (514)
Q Consensus       490 RTG~vA  495 (514)
                      ++...+
T Consensus       811 ~i~t~~  816 (850)
T TIGR01693       811 KITTFG  816 (850)
T ss_pred             EEEecC
Confidence            887754

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=89.55  E-value=1.3  Score=48.39  Aligned_cols=65  Identities=17%  Similarity=0.325  Sum_probs=52.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEecC-hHHHHHHHHHHhcCc
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYGT-DKVLQQVMEQLQKLV  164 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~gd-e~~ieQI~kQLeKLv  164 (514)
                      +-.|.+.+.|+||.|.++..+|+.+|+|+.+|.--|+... . . +=|-++|. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            5678888899999999999999999999999998886543 2 2 44445554 477899999998876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK02047 hypothetical protein; Provisional

Probab=89.33  E-value=4.1  Score=35.43  Aligned_cols=73  Identities=10%  Similarity=0.160  Sum_probs=64.2

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCce--eeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYN--IQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyN--IeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      ..+.+.+...|.++..+.|..++.++...  -.++++-++....+-.+|+.+. -++++++.|-+.|.+.-.|.-|
T Consensus        15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v   90 (91)
T PRK02047         15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV   90 (91)
T ss_pred             CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence            46899999999999999999999998555  6678899999999999999887 5788999999999999888644

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=88.99  E-value=1.4  Score=32.65  Aligned_cols=53  Identities=26%  Similarity=0.400  Sum_probs=39.2

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      ..+.+|++.++...+++.|.|+..++.+..+    .+++++++.  ...+.+.+.|+|.
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~--~~~~~~~~~l~~~   62 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDE--DDADKAVKALHEE   62 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeH--HHHHHHHHHHHHH
Confidence            3478999999999999999999988775522    457777773  4455666666654

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK08210 aspartate kinase I; Reviewed

Probab=88.82  E-value=6.1  Score=41.91  Aligned_cols=119  Identities=12%  Similarity=0.091  Sum_probs=75.8

Q ss_pred             EEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhh
Q 047033          346 TLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFA  424 (514)
Q Consensus       346 tLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V  424 (514)
                      .+++.-.|. ||.++||.+.|.+.|+||+.++....      .+++++..  ...+++.+.|+++-       +  .-.+
T Consensus       273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~  335 (403)
T PRK08210        273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLG-------L--KPSV  335 (403)
T ss_pred             EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEE
Confidence            445554444 99999999999999999999977631      36677763  34566666666641       1  2235


Q ss_pred             heeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          425 ERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       425 ~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      .+.+++|.|--..     ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh  397 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH  397 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence            6778888886432     22356777777777788766544444444444444555555543

>PRK05007 PII uridylyl-transferase; Provisional

Probab=88.70  E-value=1.3  Score=52.06  Aligned_cols=66  Identities=11%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHHhcCc
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQLYKLI  410 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL~KLi  410 (514)
                      -.+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-.--.-.|.+.+     ++.+++|.+.|.+.+
T Consensus       702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL  772 (884)
T PRK05007        702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL  772 (884)
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999998887664444444443322     345566777766544

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=88.29  E-value=11  Score=36.59  Aligned_cols=136  Identities=21%  Similarity=0.302  Sum_probs=84.7

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecC-hHHHHHHHHHHhcC-cceeeEeec
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGT-DKVLQQVMEQLQKL-VNVLKVEDL  172 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gd-e~~ieQI~kQLeKL-vdVikV~dl  172 (514)
                      +|+-++.+-..|+||=|-++..=++.-|-||-++.=...+.. .+  +.|++.+| +.....+.+-+++. +.++++...
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~   82 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA   82 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence            588899999999999999999999999999988775544322 23  77888887 55566666666332 344443221


Q ss_pred             CChhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEec--------CCE--EEEEEeCChhHHHHH
Q 047033          173 SNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDIS--------EYS--LTIEVTGDPGKMVAV  242 (514)
Q Consensus       173 t~~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs--------~~s--~~iEvTG~~~kIdaf  242 (514)
                      .  ...+--..||-=-+...-+.            .|..+-..=+|.|+|++        +.+  ++++..| .++++..
T Consensus        83 ~--~~~~~~vvLIGhiv~tdiqD------------TId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea  147 (170)
T COG2061          83 R--LREKTDVVLIGHIVHTDIQD------------TIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEA  147 (170)
T ss_pred             C--cceeEeEEEEEeeecCcHHH------------HHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHH
Confidence            1  11111223332111111111            35788888899999985        233  4555555 5667766


Q ss_pred             HHHhcc
Q 047033          243 QRNLSK  248 (514)
Q Consensus       243 i~~L~~  248 (514)
                      ++.|+.
T Consensus       148 ~~~l~e  153 (170)
T COG2061         148 LRRLKE  153 (170)
T ss_pred             HHHHHH
Confidence            666653

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=88.25  E-value=3.9  Score=41.24  Aligned_cols=74  Identities=8%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             ceEEEEEEEEeCchh--HHHHHHHHHhccCceeeeEEeeecCCCc--EEEEE--Eec-ChHHHHHHHHHHhcCcceeeEe
Q 047033           98 VRRHTISVFVGDESG--MINRIAGVFARRGYNIESLAVGLNKDKA--LFTIV--VYG-TDKVLQQVMEQLQKLVNVLKVE  170 (514)
Q Consensus        98 ~~~h~IsvlVeN~pG--VLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIV--v~g-de~~ieQI~kQLeKLvdVikV~  170 (514)
                      ...|.+.+.+.++++  +..++...+...+|.+.++.+.+.++++  .++..  ..+ ++..+++++.+|.....|.+|.
T Consensus       140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            356788888888664  6999999999999999999998765554  35443  443 6788999999999999999886


Q ss_pred             e
Q 047033          171 D  171 (514)
Q Consensus       171 d  171 (514)
                      =
T Consensus       220 W  220 (225)
T PRK15385        220 W  220 (225)
T ss_pred             E
Confidence            3

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=88.24  E-value=1.5  Score=34.83  Aligned_cols=50  Identities=24%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      +.||++.|+...+++.|+||.-++-|.++.    +++++++.  +..++.++.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~--~~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVND--SEAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeH--HHHHHHHHHHHH
Confidence            468999999999999999999999888754    58888884  455666666654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=88.01  E-value=1.5  Score=36.93  Aligned_cols=52  Identities=17%  Similarity=0.365  Sum_probs=37.6

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH--------HHHHHHHHHhc
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK--------VLQQVMEQLQK  162 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~--------~ieQI~kQLeK  162 (514)
                      ..++||++.+|...|++.|+||+-++.+.    .-+++++..++.        .++++.+-|+|
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd~~~~~~~~~~l~~~~~~~~~   70 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSKLWSRELIQQELDHVVEELEK   70 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence            46789999999999999999999997522    447777765442        34455555554

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=87.96  E-value=1.4  Score=34.14  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=37.3

Q ss_pred             eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033          108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      .+.||++.|+...|++.|+|++.++.+..+  ..+.+++..++  .+++.+.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence            468999999999999999999999876633  45777776533  3444444443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=87.81  E-value=1.5  Score=32.48  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=36.8

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      ..+++|++.++...|++.|+|++.++.+..  ...+++++..  ...+++.+.|+|
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~   61 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHE   61 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHH
Confidence            457899999999999999999998876552  2335566654  334555555554

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=87.65  E-value=1.4  Score=51.52  Aligned_cols=127  Identities=11%  Similarity=0.111  Sum_probs=77.7

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHHhcCccEEEEEecC
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      -.+.|...|+||+|.+|+++|++.|+||.+=.+..+.+.-+--.-.|.+.+     ++.+++|.+.|.+.++-..     
T Consensus       678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~-----  752 (854)
T PRK01759        678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK-----  752 (854)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-----
Confidence            489999999999999999999999999999888776665444444443322     3456667777766553210     


Q ss_pred             CchhhheeeEEEEEecCcccHHHHHHHHHhcC--cEEE---EecCCEEEEEEecC--HHHHHHHHHHhccCCc-EEEeec
Q 047033          420 HLPFAERELMLIKVAVNTTARRDVLDIATIFR--AKAV---DVSDHTITLELTGD--LDKMVALQRLLEPYGI-CEVART  491 (514)
Q Consensus       420 ~~~~V~REL~LIKV~~~~~~R~eI~~la~iFr--akIV---Dvs~~si~iE~TG~--~~KIdafi~lL~pyGI-lEvaRT  491 (514)
                        +...+   + +  .+.  +      ...|.  .+|.   +.++++.+||+...  ++=+-.+-+.|..+|+ +..||=
T Consensus       753 --~~~~~---~-~--~~~--~------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI  816 (854)
T PRK01759        753 --LKKLN---L-E--ENH--K------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI  816 (854)
T ss_pred             --Ccchh---c-c--ccc--c------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence              00000   0 1  010  0      01121  1221   23566677777765  6677777778888886 566654


Q ss_pred             c
Q 047033          492 G  492 (514)
Q Consensus       492 G  492 (514)
                      .
T Consensus       817 ~  817 (854)
T PRK01759        817 T  817 (854)
T ss_pred             c
Confidence            3

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=87.63  E-value=6.6  Score=43.09  Aligned_cols=123  Identities=18%  Similarity=0.226  Sum_probs=85.3

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HH-HHHHHHHHhcCccEEEEEecCCchh
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ES-ISKLMQQLYKLIDLHEVRDLTHLPF  423 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~-ieQI~kQL~KLidVikV~dlt~~~~  423 (514)
                      .-.....+++|++.||.+..++.|+|++-+..+.+++.    |++++++++ .. .+.+.+....+..         +-.
T Consensus       312 v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~----i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~  378 (447)
T COG0527         312 VSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS----ISFTVPESDAPRALRALLEEKLELLA---------EVE  378 (447)
T ss_pred             EEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe----EEEEEchhhHHHHHHHHHHHHhhhcc---------eEE
Confidence            33344455679999999999999999999998887765    999998654 22 2233333222322         223


Q ss_pred             hheeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          424 AERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       424 V~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      +++.+++|-+--..     .--.++++-...++-+|.-++...+.|-+.=+.+..+..++.|-
T Consensus       379 ~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH  441 (447)
T COG0527         379 VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH  441 (447)
T ss_pred             eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence            46678888774332     22367888888899999999977777777777777777776653

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=87.26  E-value=1.4  Score=35.45  Aligned_cols=46  Identities=30%  Similarity=0.478  Sum_probs=35.6

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY  407 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~  407 (514)
                      |.||+++|++..++.-|+||.-++   |+    ..+.+.|+  ++.+++.++-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S~----~~~~ilV~--~~~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---SE----ISISILVK--EEDLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---ES----SEEEEEEE--GGGHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---Ee----eeEEEEEe--HHHHHHHHHHhc
Confidence            599999999999999999998887   32    45788887  456666666655

>PRK08210 aspartate kinase I; Reviewed

Probab=86.91  E-value=8.8  Score=40.76  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=72.7

Q ss_pred             EEEEEEeCc-hhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHh
Q 047033          102 TISVFVGDE-SGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVER  180 (514)
Q Consensus       102 ~IsvlVeN~-pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~R  180 (514)
                      .|++.-.|. ||.++||.+.|.+.|+||+.++....    -+++++..  ...+++.+.|+++-       +  .-.+.+
T Consensus       273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~----~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~~~  337 (403)
T PRK08210        273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT----EVVFTVSD--EDSEKAKEILENLG-------L--KPSVRE  337 (403)
T ss_pred             EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc----eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEEeC
Confidence            445554454 99999999999999999999977622    34555543  33556666666631       1  223466


Q ss_pred             heeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033          181 ELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS  247 (514)
Q Consensus       181 EL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~  247 (514)
                      .+++|.|-... ..+..++        -.+++.....+-+|...+....-+-+.=+.+..+..++.|.
T Consensus       338 ~~a~isvvG~~~~~~~g~~--------~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh  397 (403)
T PRK08210        338 NCAKVSIVGAGMAGVPGVM--------AKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH  397 (403)
T ss_pred             CcEEEEEEcCCcCCCccHH--------HHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence            78888886532 2334430        02355556667777765544333333334444555555554

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=86.72  E-value=1.7  Score=33.28  Aligned_cols=51  Identities=16%  Similarity=0.303  Sum_probs=37.3

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ  161 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe  161 (514)
                      ..+.||++.|+...+++.|+|++.++.+..+  ..+++++..++  .+++.+.|.
T Consensus        11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh   61 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVH   61 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHH
Confidence            4578999999999999999999999876532  45777776533  344444444

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK08639 threonine dehydratase; Validated

Probab=86.59  E-value=4.4  Score=43.49  Aligned_cols=80  Identities=11%  Similarity=0.100  Sum_probs=60.5

Q ss_pred             eeEEEEEEEeCcchHHHHHHH-HhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTG-VFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTH  420 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItg-LFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~  420 (514)
                      +...+++...++||-|.++.. +++.++ ||..+.--.....+..++.++++. +.+.++++..+|++.=  .++.++++
T Consensus       335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  411 (420)
T PRK08639        335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP  411 (420)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence            468999999999999999999 555555 999986654445556678888874 4468999999999864  35566677


Q ss_pred             chhhh
Q 047033          421 LPFAE  425 (514)
Q Consensus       421 ~~~V~  425 (514)
                      .+.+.
T Consensus       412 ~~~~~  416 (420)
T PRK08639        412 NEPLY  416 (420)
T ss_pred             CHHHH
Confidence            66554

>PRK08526 threonine dehydratase; Provisional

Probab=86.12  E-value=3.4  Score=44.41  Aligned_cols=67  Identities=19%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEe-CChHHHHHHHHHHhcC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVP-ATDESISKLMQQLYKL  409 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~-gde~~ieQI~kQL~KL  409 (514)
                      +.+.+.+.+.++||-|.+++.++++.|-||..+.-....   ..+-.+++++++ -+.+.+++|...|++.
T Consensus       325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~  395 (403)
T PRK08526        325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK  395 (403)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            478999999999999999999999999999998885533   236678888887 3567899999998654

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=86.02  E-value=1.9  Score=34.81  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=31.0

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA  394 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g  394 (514)
                      ..|.||++++|.+.++++|.||+-++.. .+     .++++++.
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~   46 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDG   46 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEch
Confidence            3478999999999999999999999554 22     38888874

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>PRK09084 aspartate kinase III; Validated

Probab=85.92  E-value=14  Score=40.33  Aligned_cols=113  Identities=16%  Similarity=0.214  Sum_probs=74.4

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH-------HHHHHHHHHhcCccEEEEEecCCchhhh
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE-------SISKLMQQLYKLIDLHEVRDLTHLPFAE  425 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~-------~ieQI~kQL~KLidVikV~dlt~~~~V~  425 (514)
                      ++||+++||...|.+.|+||+-++.++      ..++++++.++.       ..+.+.+.|+++-.          -.+.
T Consensus       318 ~~~g~~a~if~~l~~~~I~Vd~I~sse------~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~----------i~~~  381 (448)
T PRK09084        318 HARGFLAEVFGILARHKISVDLITTSE------VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR----------VEVE  381 (448)
T ss_pred             ccccHHHHHHHHHHHcCCeEEEEeccC------cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe----------EEEE
Confidence            689999999999999999999998532      469999986542       23566666654211          1246


Q ss_pred             eeeEEEEEecCcc-cH----HHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          426 RELMLIKVAVNTT-AR----RDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       426 REL~LIKV~~~~~-~R----~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      +.+++|.|--..- ++    ..++......+-.++..+...+.|-+.=+.+..+..++.|.
T Consensus       382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH  442 (448)
T PRK09084        382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH  442 (448)
T ss_pred             CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence            7799999865432 22    34454444446677776666666655555565666665553

>PRK05007 PII uridylyl-transferase; Provisional

Probab=85.78  E-value=2.3  Score=50.01  Aligned_cols=66  Identities=18%  Similarity=0.324  Sum_probs=47.1

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C---ChHHHHHHHHHHhcCc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A---TDESISKLMQQLYKLI  410 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g---de~~ieQI~kQL~KLi  410 (514)
                      ...|.|.+.|+||+|.+|+.+|.+-|+||.+--+..-.+ ..--.-.|.+  |   +++..+.|.++|..-+
T Consensus       808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge-ra~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE-RVEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc-eEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999977776433 3333334433  2   2445666666665443

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=85.73  E-value=0.81  Score=40.23  Aligned_cols=71  Identities=23%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEE--EEecC--hHHHHH----HHHHHhcCcceeeE
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTI--VVYGT--DKVLQQ----VMEQLQKLVNVLKV  169 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TI--Vv~gd--e~~ieQ----I~kQLeKLvdVikV  169 (514)
                      +++..|+|.=+||||+.+.|+++|++-|.||..++  .|--.+++|+  .|+.+  ......    +.+..++|==-+.|
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~v   78 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDVRV   78 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEEEE
Confidence            36789999999999999999999999999998655  4444455554  34432  223333    44445555333334


Q ss_pred             e
Q 047033          170 E  170 (514)
Q Consensus       170 ~  170 (514)
                      +
T Consensus        79 q   79 (90)
T COG3830          79 Q   79 (90)
T ss_pred             e
Confidence            4

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=85.67  E-value=2.2  Score=50.26  Aligned_cols=65  Identities=11%  Similarity=0.269  Sum_probs=47.9

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEE-ec----ChHHHHHHHHHHhcCc
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVV-YG----TDKVLQQVMEQLQKLV  164 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv-~g----de~~ieQI~kQLeKLv  164 (514)
                      .-.|.|+..|+||+|.+|+++|++.|+||.+-.+..+.+...  |.|.- +|    ++...++|.+.|.+.+
T Consensus       814 ~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        814 VTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999877733222  33332 12    2345677777776544

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=85.66  E-value=2  Score=38.31  Aligned_cols=65  Identities=20%  Similarity=0.400  Sum_probs=52.8

Q ss_pred             CchhHHHHHHHHHhccCceeeeEEeeecCCCc-E----EEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033          109 DESGMINRIAGVFARRGYNIESLAVGLNKDKA-L----FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus       109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~----~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      +-|.+|..|..+-...|..+.+++.++....+ +    ++|.+.|+=..+-+.+++|+++-.++.|++++
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~  120 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence            45889999999999999999999999755443 2    78889999999999999999999999999886

>TIGR02079 THD1 threonine dehydratase

Probab=85.21  E-value=5.3  Score=42.90  Aligned_cols=80  Identities=11%  Similarity=0.135  Sum_probs=61.8

Q ss_pred             eeEEEEEEEeCcchHHHHHHH-HhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTG-VFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTH  420 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItg-LFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~  420 (514)
                      +...+++.+-++||-|.++.. +++.++ ||..+.-......+..++.++++. +.+.++++.+.|++.=  .++.++++
T Consensus       324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  400 (409)
T TIGR02079       324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE  400 (409)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence            468999999999999999999 555555 999777665556677888888874 4578899999998864  35567777


Q ss_pred             chhhh
Q 047033          421 LPFAE  425 (514)
Q Consensus       421 ~~~V~  425 (514)
                      .+.+.
T Consensus       401 ~~~~~  405 (409)
T TIGR02079       401 NDILY  405 (409)
T ss_pred             CHHHH
Confidence            66554

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=85.09  E-value=6.8  Score=40.79  Aligned_cols=146  Identities=20%  Similarity=0.253  Sum_probs=86.6

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CC--eeEEEEEEeCChHHHHHHHHHHhcCccEEEEE-e
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EG--LSRITTVVPATDESISKLMQQLYKLIDLHEVR-D  417 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~--iSRiTIVV~gde~~ieQI~kQL~KLidVikV~-d  417 (514)
                      ++..+|.+-..++||+.++|++...++|.||..-.-- +.. .+  +-|+.+-..+.....+++...+..+.+=.... .
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~   83 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR   83 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence            4578999999999999999999999999999876665 222 22  45556665565445666666665544411100 0


Q ss_pred             cCCchhhheeeEEEEEe-----------------------cCcccHHHHHHHHHhcCcEEEEecCCEEEEEEec--CHHH
Q 047033          418 LTHLPFAERELMLIKVA-----------------------VNTTARRDVLDIATIFRAKAVDVSDHTITLELTG--DLDK  472 (514)
Q Consensus       418 lt~~~~V~REL~LIKV~-----------------------~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG--~~~K  472 (514)
                      +.......|  ++|-|+                       +--.+-.+...+++-|+----.+.       +|.  .++.
T Consensus        84 ~~~~~~~~r--i~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip-------~~~~~k~e~  154 (287)
T COG0788          84 LHDAAQRKR--IAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIP-------VTKENKAEA  154 (287)
T ss_pred             EeccccCce--EEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeecc-------CCCCcchHH
Confidence            111112222  122221                       112344566667777765433333       333  3666


Q ss_pred             HHHHHHHhccCCcEEEeecceeEeeccCCcc
Q 047033          473 MVALQRLLEPYGICEVARTGRVALVRESGVD  503 (514)
Q Consensus       473 Idafi~lL~pyGIlEvaRTG~vAl~Rg~~~~  503 (514)
                      =+..+++++.||      +-.|-|+|=.++-
T Consensus       155 E~~~~~ll~~~~------~DlvVLARYMqIL  179 (287)
T COG0788         155 EARLLELLEEYG------ADLVVLARYMQIL  179 (287)
T ss_pred             HHHHHHHHHHhC------CCEEeehhhHhhC
Confidence            778899999998      3345566665543

>PRK04374 PII uridylyl-transferase; Provisional

Probab=84.80  E-value=2.6  Score=49.67  Aligned_cols=66  Identities=15%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C---ChHHHHHHHHHHhcCc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A---TDESISKLMQQLYKLI  410 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g---de~~ieQI~kQL~KLi  410 (514)
                      ..+|.|.+.|+||+|.+|++.|+..|.||.+-.+... +..+--.-.|.+  |   ++...++|.+.|.+-+
T Consensus       796 ~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l  866 (869)
T PRK04374        796 RTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACL  866 (869)
T ss_pred             eEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            4589999999999999999999999999999988888 433333333333  2   1233367777665544

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=84.72  E-value=2.4  Score=32.46  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=37.4

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      ..+.+|++.++...+++.|+|++-++.+..+  ..+++++..++  .+++.+.|++
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~~--~~~~~~~Lh~   62 (66)
T cd04924          11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAEDD--GWAAVKAVHD   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence            3467999999999999999999999876543  44667776432  4444555544

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=84.72  E-value=3  Score=31.42  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=36.9

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      ..+.||++.++...+++.|.|++.++..     + .+++++++.  ...+++.+-|++
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~--~~~~~~~~~l~~   59 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeH--HHHHHHHHHHHH
Confidence            3477999999999999999999999742     1 458888873  344445555544

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04998 hypothetical protein; Provisional

Probab=84.60  E-value=9.5  Score=32.77  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHE  414 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVik  414 (514)
                      ..|++.+...+.++.++.|..+|.+..-.-+.+++-++-...+-.+|+.+. -+++.++.|-+.|.+...|+-
T Consensus        14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~m   86 (88)
T PRK04998         14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRM   86 (88)
T ss_pred             CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEE
Confidence            368999999999999999999997764333446777888888988998887 578899999999999988863

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=84.37  E-value=4  Score=30.70  Aligned_cols=50  Identities=14%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      ..+.||++.|+.+.+++.|+|++.++..    +..+++++..+  ..+++.+-|+|
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--d~~~~~~~l~~   59 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDED--DAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeHH--HHHHHHHHHHH
Confidence            4578999999999999999999999832    24577777643  33444555444

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=84.20  E-value=2.2  Score=44.32  Aligned_cols=206  Identities=20%  Similarity=0.254  Sum_probs=118.7

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEe--cChHHHHHHHHHHhcCcceeeEe-ec
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVY--GTDKVLQQVMEQLQKLVNVLKVE-DL  172 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~--gde~~ieQI~kQLeKLvdVikV~-dl  172 (514)
                      ++..+|.+-..++||+.++|+|.+.+.|.||..-..-...+.++  |.+...  +.....+++...+..+.+=.... .+
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~~   84 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWRL   84 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeEE
Confidence            46789999999999999999999999999999877662222344  566655  33345677777776654411111 01


Q ss_pred             CChhhHHhheeeEEEecCc-------------cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeC--Chh
Q 047033          173 SNEPQVERELMLIKVNADP-------------KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTG--DPG  237 (514)
Q Consensus       173 t~~~~V~REL~LiKV~~~~-------------~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG--~~~  237 (514)
                      .+.....|  +++-|+-..             +-..||..-  ..-|.+...+++.|+----.       |-++.  +++
T Consensus        85 ~~~~~~~r--i~i~VSK~~HCL~DLL~r~~~g~L~~eI~~V--IsNH~dl~~~v~~~~IPfhh-------ip~~~~~k~e  153 (287)
T COG0788          85 HDAAQRKR--IAILVSKEDHCLGDLLYRWRIGELPAEIVAV--ISNHDDLRPLVERFDIPFHH-------IPVTKENKAE  153 (287)
T ss_pred             eccccCce--EEEEEechHHHHHHHHHHHhcCCcCCceEEE--EcCCHHHHHHHHHcCCCeee-------ccCCCCcchH
Confidence            11222222  233332211             111122100  25666778899999854333       33443  477


Q ss_pred             HHHHHHHHhccCCcEEEeeccceeeecccccCCCcc-cccc-------ccCCCCCCCCCcccccccccccccc-------
Q 047033          238 KMVAVQRNLSKFGIREIARTGKIALRREKLGASAPF-WRFS-------AASYPDLNETPTIDGLVGAGHRPLL-------  302 (514)
Q Consensus       238 kIdafi~~L~~fGIlEvaRTG~iAl~R~~~~~~~~~-~~~~-------~~~~p~~~~~~~~~~~~~~~~~~~~-------  302 (514)
                      .=+..+++++.||+      -.+-|+|=..-++.-| .+|.       -.=-|.+..+.|-.-...++++-..       
T Consensus       154 ~E~~~~~ll~~~~~------DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT  227 (287)
T COG0788         154 AEARLLELLEEYGA------DLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVT  227 (287)
T ss_pred             HHHHHHHHHHHhCC------CEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeecc
Confidence            77789999999993      3455777655555443 1111       1225777776655555666666332       


Q ss_pred             CCCCC---CCCceEecCCCCC
Q 047033          303 SETDT---VEGDVYPVEPSDG  320 (514)
Q Consensus       303 ~~~~~---~~gdvy~v~~~~~  320 (514)
                      ..-++   -..||.+|....+
T Consensus       228 ~dLDeGPIIeQdv~rV~H~~s  248 (287)
T COG0788         228 ADLDEGPIIEQDVIRVDHAYS  248 (287)
T ss_pred             CCCCCCCceeeeeeecCccCC
Confidence            11111   3678888776653

>PLN02551 aspartokinase

Probab=84.12  E-value=13  Score=41.70  Aligned_cols=113  Identities=17%  Similarity=0.191  Sum_probs=70.1

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--------HHHHHHHHHhcCccEEEEEecCCchhh
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--------SISKLMQQLYKLIDLHEVRDLTHLPFA  424 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--------~ieQI~kQL~KLidVikV~dlt~~~~V  424 (514)
                      ++||+++||.+.|.+.|+||+-++.+  +    ..++++++.++.        .++++...|++..   .       -.+
T Consensus       378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e----~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~---~-------V~v  441 (521)
T PLN02551        378 GQYGFLAKVFSTFEDLGISVDVVATS--E----VSISLTLDPSKLWSRELIQQELDHLVEELEKIA---V-------VNL  441 (521)
T ss_pred             CcccHHHHHHHHHHHcCCcEEEEecc--C----CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCC---e-------EEE
Confidence            68999999999999999999999643  2    358899986542        2333444444321   1       124


Q ss_pred             heeeEEEEEecCcccH----HHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhc
Q 047033          425 ERELMLIKVAVNTTAR----RDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       425 ~REL~LIKV~~~~~~R----~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      .+++++|-|--.....    ..+++.....+.+|.-++  ...+-|-+.=+.+..+..++.|.
T Consensus       442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH  504 (521)
T PLN02551        442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALH  504 (521)
T ss_pred             eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHH
Confidence            5678888886442222    355666666677784444  44445555545555555555554

>PRK04374 PII uridylyl-transferase; Provisional

Probab=84.07  E-value=3.1  Score=49.03  Aligned_cols=65  Identities=20%  Similarity=0.359  Sum_probs=46.7

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CC-hHHHHHHHHHHhcC
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--AT-DESISKLMQQLYKL  409 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gd-e~~ieQI~kQL~KL  409 (514)
                      ..+.|...|+||++++|+|+|++.|+||.+-.+-.+.+.-+--.-.|.+  |. ++..+++.+.|++.
T Consensus       691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~  758 (869)
T PRK04374        691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQV  758 (869)
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Confidence            4789999999999999999999999999998887776554433333333  21 33455566665543

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=83.79  E-value=17  Score=42.88  Aligned_cols=114  Identities=12%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHHhcCccEEEEEecCCchhhhe
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQLYKLIDLHEVRDLTHLPFAER  426 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL~KLidVikV~dlt~~~~V~R  426 (514)
                      .+.||+++||.+.|++.|.||+-++.+  +    ..++++++..+     +.++++.++|.++-.|.          +.+
T Consensus       333 ~~~~g~~a~if~~la~~~I~Vd~I~ss--e----~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~----------~~~  396 (861)
T PRK08961        333 WQQVGFLADVFTLFKKHGLSVDLISSS--E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVK----------IIV  396 (861)
T ss_pred             cccccHHHHHHHHHHHcCCeEEEEEcC--C----CEEEEEEccccccchHHHHHHHHHHHhhcCcEE----------EeC
Confidence            378999999999999999999988543  2    55888888543     45677777776533322          235


Q ss_pred             eeEEEEEecCcc-c----HHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          427 ELMLIKVAVNTT-A----RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       427 EL~LIKV~~~~~-~----R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      .+++|-|--..- +    -..+++.....+..++..+...+.|-+.=+.+..+..++.|.
T Consensus       397 ~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH  456 (861)
T PRK08961        397 PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH  456 (861)
T ss_pred             CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHH
Confidence            578887754321 2    235555555567778888766555555545555555554443

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=83.72  E-value=3.1  Score=31.86  Aligned_cols=52  Identities=19%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      +.+.||++.|+...+++.|+|++-++.+.++  ..+++++..++  .+++.+.|+|
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~d--~~~~~~~lh~   62 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNED--ADKAVKAIYE   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHHH
Confidence            4568999999999999999999999876533  45777776533  3344444433

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=83.42  E-value=3.2  Score=33.32  Aligned_cols=49  Identities=18%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             cchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          354 SPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       354 ~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      +||++.|+...+++.|+|+.-++-|+++.    +++++|+  ++..++.++.|++
T Consensus        14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~----~is~~V~--~~~~~~av~~Lh~   62 (66)
T cd04915          14 TPGVLARGLAALAEAGIEPIAAHQSMRNV----DVQFVVD--RDDYDNAIKALHA   62 (66)
T ss_pred             cchHHHHHHHHHHHCCCCEEEEEecCCee----EEEEEEE--HHHHHHHHHHHHH
Confidence            78999999999999999999998888643    5888887  4566666666654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>PRK00907 hypothetical protein; Provisional

Probab=83.32  E-value=8.8  Score=33.74  Aligned_cols=73  Identities=12%  Similarity=0.112  Sum_probs=63.6

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCc--eeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGY--NIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGy--NIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      ..+.|.|.-.+++++...|..++.+.+-  +=.++++-++....+-.+|+++. .+.++++.|-+.|.+.-.|.-|
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkmv   91 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKWT   91 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence            4689999999999999999999998865  56788889999999999999987 5678899999999999888543

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=83.09  E-value=3.7  Score=32.32  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=36.7

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      .+.||++.|+...+.+.|+|+..++-  +|    .++.++++  ++..+++++.|++-
T Consensus        12 ~~~~gi~~~if~aL~~~~I~v~~~~~--Se----~~is~~v~--~~~~~~av~~Lh~~   61 (64)
T cd04937          12 RGVPGVMAKIVGALSKEGIEILQTAD--SH----TTISCLVS--EDDVKEAVNALHEA   61 (64)
T ss_pred             cCCcCHHHHHHHHHHHCCCCEEEEEc--Cc----cEEEEEEc--HHHHHHHHHHHHHH
Confidence            46899999999999999999974442  21    35888887  45566666666653

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK14434 acylphosphatase; Provisional

Probab=83.01  E-value=2.9  Score=36.32  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHhcC---cEEEEecCCEEEEEEecCH-HHHHHHHHHhcc
Q 047033          439 ARRDVLDIATIFR---AKAVDVSDHTITLELTGDL-DKMVALQRLLEP  482 (514)
Q Consensus       439 ~R~eI~~la~iFr---akIVDvs~~si~iE~TG~~-~KIdafi~lL~p  482 (514)
                      -|.-+.++|+.++   +.|-...+.++.+++.|++ +++++|++.|+.
T Consensus        17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~   64 (92)
T PRK14434         17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK   64 (92)
T ss_pred             EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence            3889999999999   9999999999999999997 699999999975

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=82.90  E-value=3.2  Score=35.31  Aligned_cols=60  Identities=17%  Similarity=0.373  Sum_probs=47.5

Q ss_pred             EEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC---hHHHHHHHHHHhcCccEEEE
Q 047033          350 LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT---DESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       350 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd---e~~ieQI~kQL~KLidVikV  415 (514)
                      +..++.|.+.|+..+|.+.|.++|-+..      |+-.|+++++.+   ++..++|++.|++-.+.-++
T Consensus        10 ~Mn~evGF~rk~L~I~E~~~is~Eh~PS------GID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911          10 LMNREVGFGRKLLSILEDNGISYEHMPS------GIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             hccchhcHHHHHHHHHHHcCCCEeeecC------CCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            3578899999999999999999998754      455699999976   55888888888886554333

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=82.26  E-value=2.1  Score=34.39  Aligned_cols=54  Identities=28%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             EEEEEEEe----CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033          101 HTISVFVG----DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ  161 (514)
Q Consensus       101 h~IsvlVe----N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe  161 (514)
                      ..|++.-.    |.||+++|++..++..|+||--++   ++.  .+.+.|..+  .+++.++-|+
T Consensus         7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~~--~~~~A~~~L~   64 (65)
T PF13840_consen    7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKEE--DLEKAVEALH   64 (65)
T ss_dssp             EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEGG--GHHHHHHHHH
T ss_pred             EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeHH--HHHHHHHHhc
Confidence            34444444    599999999999999999998777   432  355556543  3555555544

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=82.16  E-value=4.1  Score=47.89  Aligned_cols=39  Identities=10%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC
Q 047033          101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK  139 (514)
Q Consensus       101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~  139 (514)
                      -.|.|+..|+||++.+|+|+|++.|+||.+=.+..+.+.
T Consensus       678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g  716 (854)
T PRK01759        678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDG  716 (854)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCC
Confidence            489999999999999999999999999999888766554

>PRK09034 aspartate kinase; Reviewed

Probab=81.72  E-value=20  Score=39.14  Aligned_cols=116  Identities=9%  Similarity=0.159  Sum_probs=72.4

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHH--H-HHHHHHHhcCccEEEEEecCCchhhheeeE
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES--I-SKLMQQLYKLIDLHEVRDLTHLPFAERELM  429 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~--i-eQI~kQL~KLidVikV~dlt~~~~V~REL~  429 (514)
                      .+||+++||.+.|++.|.|++-++      .+...++++++.++..  . ..+.+.|++-..+..|       .+.+.++
T Consensus       320 ~~~g~~a~if~~la~~~I~Vd~i~------ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va  386 (454)
T PRK09034        320 REVGFGRKVLQILEDHGISYEHMP------SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLA  386 (454)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEc------CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEE
Confidence            368999999999999999999983      2224588999854321  1 5566666654433222       3466788


Q ss_pred             EEEEecC-----cccHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhc
Q 047033          430 LIKVAVN-----TTARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       430 LIKV~~~-----~~~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      +|.+.-.     +..-..+++.....+.+|.-++  .....+-++=+.+..+..++.|.
T Consensus       387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH  445 (454)
T PRK09034        387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY  445 (454)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence            9988432     1223578888888888885553  22233434444444554455543

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.67  E-value=5.5  Score=32.03  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=32.7

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA  394 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g  394 (514)
                      ..+.+|++.++...+++.|.|++.++.+..+    .+++++++.
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~   50 (80)
T cd04921          11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDE   50 (80)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeH
Confidence            4568999999999999999999999887433    267788874

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=81.46  E-value=4.5  Score=29.22  Aligned_cols=48  Identities=21%  Similarity=0.383  Sum_probs=36.3

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHH
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL  406 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL  406 (514)
                      +.||.+.++...+++.|+||+.++.+..   + ..++++++.  +..+++.+-|
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~--~~~~~~~~~l   59 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDE--SDLEKAVKAL   59 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeH--HHHHHHHHHh
Confidence            4789999999999999999999988764   2 457777773  3455555443

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins

Probab=80.93  E-value=6.6  Score=32.02  Aligned_cols=46  Identities=26%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             HHHHHHhcCCE-------EEEec---CCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 047033          209 IRWLVDIFRAK-------IVDIS---EYSLTIEVTGDPGKMVAVQRNLSKFGI-REI  254 (514)
Q Consensus       209 i~~l~~~F~ak-------VVDvs---~~s~~iEvTG~~~kIdafi~~L~~fGI-lEv  254 (514)
                      |.++++.|+..       |-.+.   -..+++|++|++++++++++.|+..|+ .|.
T Consensus        19 is~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv   75 (76)
T PF09383_consen   19 ISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV   75 (76)
T ss_dssp             HHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence            48888888654       44433   356999999999999999999999996 343

This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.

>PRK09977 putative Mg(2+) transport ATPase; Provisional

Probab=80.88  E-value=11  Score=37.83  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEE
Q 047033          345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVR  416 (514)
Q Consensus       345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~  416 (514)
                      |.+.+..++.  -+..+...|.+.++.+.++.....++++.-.+++.++ .+...+++..+|.++.+|.+|.
T Consensus       145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~  213 (215)
T PRK09977        145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS  213 (215)
T ss_pred             EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence            5555555444  3688889999999999999988776666666677777 4577899999999999999885

>TIGR00657 asp_kinases aspartate kinase

Probab=80.60  E-value=15  Score=39.51  Aligned_cols=114  Identities=20%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc---CccEEEEEecCCchhhheeeEEE
Q 047033          355 PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK---LIDLHEVRDLTHLPFAERELMLI  431 (514)
Q Consensus       355 pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K---LidVikV~dlt~~~~V~REL~LI  431 (514)
                      ||++.||...|.+.|+||+.++.+..+    ..++++++.+  ..+...+.|.+   ...+..|       .+.+.+++|
T Consensus       315 ~g~la~if~~L~~~~I~I~~i~q~~se----~sIs~~I~~~--~~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~V  381 (441)
T TIGR00657       315 PGFLARVFGALAEAGINVDLITQSSSE----TSISFTVDKE--DADQAKTLLKSELNLSALSSV-------EVEKGLAKV  381 (441)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecCCC----ceEEEEEEHH--HHHHHHHHHHHHHHhcCcceE-------EEcCCeEEE
Confidence            899999999999999999999754443    2378888743  34444444443   2233222       245678888


Q ss_pred             EEecC-----cccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          432 KVAVN-----TTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       432 KV~~~-----~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      .|...     +..-.++++.....+-.|.-++.....+-++=+.+..+..++.|.
T Consensus       382 svvG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh  436 (441)
T TIGR00657       382 SLVGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLH  436 (441)
T ss_pred             EEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHH
Confidence            88432     222367888888888888877544444555555566666666654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06291 aspartate kinase; Provisional

Probab=80.51  E-value=11  Score=41.05  Aligned_cols=119  Identities=15%  Similarity=0.202  Sum_probs=75.4

Q ss_pred             CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEE
Q 047033          353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIK  432 (514)
Q Consensus       353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIK  432 (514)
                      +.||+++|+...|++.|+|++-++.+..+    ..++++++.+  ..++.++.|++...=.    .-..=.+.+++++|.
T Consensus       333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse----~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Is  402 (465)
T PRK06291        333 GVPGTAARIFSALAEEGVNVIMISQGSSE----SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVA  402 (465)
T ss_pred             CCccHHHHHHHHHHHCCCcEEEEEecCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEE
Confidence            78999999999999999999999876544    4588888843  3445555555432100    011123456789998


Q ss_pred             EecCcc-----cHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhc
Q 047033          433 VAVNTT-----ARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       433 V~~~~~-----~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~  481 (514)
                      |.-..-     .-..++......+.+|.-++  .....|-+.=+.+..+..++.|.
T Consensus       403 vvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh  458 (465)
T PRK06291        403 VVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLH  458 (465)
T ss_pred             EEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHH
Confidence            865432     12466666677777886554  44445555555666666666654

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=80.42  E-value=14  Score=40.70  Aligned_cols=127  Identities=19%  Similarity=0.267  Sum_probs=80.5

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHHhcCcceeeEeecCChhhHH
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQLQKLVNVLKVEDLSNEPQVE  179 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQLeKLvdVikV~dlt~~~~V~  179 (514)
                      .-.....+++|++.||.+++++.|+|++-+..+.+++.  +++++..++  ...+.+.+....+..         +-.++
T Consensus       312 v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~~~  380 (447)
T COG0527         312 VSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA---------EVEVE  380 (447)
T ss_pred             EEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc---------eEEee
Confidence            33344445569999999999999999999988877665  888887544  223333333332322         12345


Q ss_pred             hheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033          180 RELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS  247 (514)
Q Consensus       180 REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~  247 (514)
                      +.+++|-+--.. ....-+        --.+++-...++-.|.-++...+-|-+-=+.+..+..++.|.
T Consensus       381 ~~~a~vsiVG~gm~~~~gv--------aa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH  441 (447)
T COG0527         381 EGLALVSIVGAGMRSNPGV--------AARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH  441 (447)
T ss_pred             CCeeEEEEEccccccCcCH--------HHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence            566666653322 111122        113467777788899999977777777777777777777664

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=80.10  E-value=10  Score=42.10  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      +.+.+++..-++||-|.+++.+++.+  ||.-+.--.. +.+..++.+.++- +.+.+++|+++|++.=  .++.|+++.
T Consensus       324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~-~~~~a~v~vgie~~~~~~~~~l~~~L~~~G--y~~~dls~n  398 (499)
T TIGR01124       324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYA-DRKDAHIFVGVQLSNPQERQEILARLNDGG--YSVVDLTDD  398 (499)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEec-CCCeEEEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCCC
Confidence            47899999999999999999999974  9998877653 4456778888773 5689999999998753  567778876


Q ss_pred             hhh
Q 047033          422 PFA  424 (514)
Q Consensus       422 ~~V  424 (514)
                      +..
T Consensus       399 e~~  401 (499)
T TIGR01124       399 ELA  401 (499)
T ss_pred             HHH
Confidence            543

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	514
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		3e-25
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		7e-25
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		6e-22
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		7e-23
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		2e-18
2ko1_A	88	Solution Nmr Structure Of The Act Domain From Gtp P		8e-04

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 339 TSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES 398
           T  +R H +S LV++ PGV   V  +FARRG+NI S+ VG +ET GLSR+   V   D++
Sbjct: 24  TDQIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKT 83
Query: 399 ISKLMQQLYKLIDLHEVRDLTHLP--FAERELMLIKVAVNTTARRDVLDIATIFRAKAVD 456
           I ++ +Q YKL+++ +V  +  LP    ERE  LIKV  +   ++++  +  IFR K +D
Sbjct: 84  IEQIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDED-KQEIFQLVEIFRGKIID 142
Query: 457 VSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
           VS     +E+TG   K+ A   LL    + E+ARTG VA  R
Sbjct: 143 VSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVME 158
           H IS+   +E+G ++R+AG+F+ RGYNIESL+V   +D  L   T+V  G D++++Q+ +
Sbjct: 5   HIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQITK 64
Query: 159 QLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA 218
           QL KL+ V+K+ DLS+E  VEREL L+KV A  K R E             + L DIFR 
Sbjct: 65  QLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREE------------XKRLADIFRG 112
Query: 219 KIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
            I+D++    TIE+TG   K+    + +    I EIARTG   L R
Sbjct: 113 NIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 90/158 (56%)
Query: 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESIS 400
           G   H +S+L  +  G L+ V G+F+ RGYNI+SL+V   E   LSR T V    DE + 
Sbjct: 1   GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVE 60
Query: 401 KLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDH 460
           ++ +QL KLI++ ++ DL+   + EREL L+KV      R +   +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNE 120
Query: 461 TITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
             T+ELTG   K+    + ++   I E+ARTG   L R
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 19/167 (11%)
Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQL 160
           +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G +KVL+Q+ +QL
Sbjct: 6   LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKI 220
            KLV+VL+V +L     VERE+ML+K+ A    R E            ++   +IFR +I
Sbjct: 66  HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDE------------VKRNTEIFRGQI 113
Query: 221 VDISEYSLTIEVTGDPGKM---VAVQRNLSKFGIREIARTGKIALRR 264
           +D++    T+++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct: 114 IDVTPSLYTVQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL 406
           LS+L+ +  G L+ V G+F++RGYNI+SL V   +   LSR+T      ++ + ++ +QL
Sbjct: 6   LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 407 YKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLEL 466
           +KL+D+  V +L      ERE+ML+K+  +   R +V     IFR + +DV+    T++L
Sbjct: 66  HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 125
Query: 467 TGDLDKMVA-LQRLLEPYGICEVARTGRVALVR 498
            G   K+ A L  + +   I EVAR+G V L R
Sbjct: 126 AGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>pdb|2KO1|A Chain A, Solution Nmr Structure Of The Act Domain From Gtp Pyrophosphokinase Of Chlorobium Tepidum. Northeast Structural Genomics Consortium Target Ctr148a Length = 88

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFT----IVVYGTDKVLQQVMEQLQKLV 164
           D++GM N+I GV ++   NI ++   LN    +FT    I V  TDK L  +M++L+K+ 
Sbjct: 14  DKNGMTNQITGVISKFDTNIRTIV--LNAKDGIFTCNLMIFVKNTDK-LTTLMDKLRKVQ 70
Query: 165 NVLKVEDLSN 174
            V  VE LSN
Sbjct: 71  GVFTVERLSN 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	8e-74
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	7e-73
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	4e-73
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	4e-72
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	9e-72
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	8e-70
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-05

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  230 bits (588), Expect = 8e-74
 Identities = 61/160 (38%), Positives = 94/160 (58%)

Query: 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESIS 400
           G   H +S+L+ +  G L+ V G+F+ RGYNI+SL+V   E   LSR+T V    DE + 
Sbjct: 1   GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVE 60

Query: 401 KLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDH 460
           ++ +QL KLI++ ++ DL+   + ERELML+KV      R ++  +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNE 120

Query: 461 TITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES 500
             T+ELTG   K+    + ++   I E+ARTG   L R  
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE 160

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  227 bits (581), Expect = 7e-73
 Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 14/169 (8%)

Query: 98  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQ 155
             RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V   +D  L   T+V  G D++++Q
Sbjct: 2   HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQ 61

Query: 156 VMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDI 215
           + +QL KL+ V+K+ DLS+E  VERELML+KV A  K R E+              L DI
Sbjct: 62  ITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMK------------RLADI 109

Query: 216 FRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
           FR  I+D++    TIE+TG   K+    + +    I EIARTG   L R
Sbjct: 110 FRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  229 bits (586), Expect = 4e-73
 Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 3/174 (1%)

Query: 334 LNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP 393
                T  +R H +SMLV++ PGV+  V  +FARRG+NI S+ VG +ET GLSR+  +V 
Sbjct: 19  FQGHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78

Query: 394 ATDESISKLMQQLYKLIDLHEVRDLTHLP--FAERELMLIKVAVNTTARRDVLDIATIFR 451
             D++I ++ +Q YKL+++ +V  +  LP    ERE+ LIKV  +   ++++  +  IFR
Sbjct: 79  GDDKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFR 137

Query: 452 AKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSK 505
            K +DVS     +E+TG   K+ A   LL    + E+ARTG VA+ R +  + +
Sbjct: 138 GKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEGE 191

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  226 bits (579), Expect = 4e-72
 Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 17/187 (9%)

Query: 91  RSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYG 148
           +      +R H +S+ V ++ G++ ++A +FARRG+NI S+ VG ++   L    I+V G
Sbjct: 20  QGHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG 79

Query: 149 TDKVLQQVMEQLQKLVNVLKVEDLSNEPQ--VERELMLIKVNADPKFRAEIFLFPCLGVH 206
            DK ++Q+ +Q  KLV V+KV  +   P+  VERE+ LIKV  D   + EIF        
Sbjct: 80  DDKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIF-------- 130

Query: 207 LQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREK 266
                LV+IFR KI+D+S     IE+TG   K+ A    L +  + EIARTG +A+ R  
Sbjct: 131 ----QLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWN 186

Query: 267 LGASAPF 273
           +     F
Sbjct: 187 VKEGEGF 193

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  224 bits (574), Expect = 9e-72
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 15/170 (8%)

Query: 98  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQ 155
           + R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G +KVL+Q
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 156 VMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDI 215
           + +QL KLV+VL+V +L     VERE+ML+K+ A    R E+                +I
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK------------RNTEI 108

Query: 216 FRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG-IREIARTGKIALRR 264
           FR +I+D++    T+++ G  GK+ A   ++     I E+AR+G + L R
Sbjct: 109 FRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  219 bits (561), Expect = 8e-70
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 1/158 (0%)

Query: 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISK 401
           +    LS+L+ +  G L+ V G+F++RGYNI+SL V   +   LSR+T      ++ + +
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 402 LMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHT 461
           + +QL+KL+D+  V +L      ERE+ML+K+  +   R +V     IFR + +DV+   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 462 ITLELTGDLDKMVALQRLLEPYG-ICEVARTGRVALVR 498
            T++L G   K+ A    +     I EVAR+G V L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 7e-12
 Identities = 49/342 (14%), Positives = 102/342 (29%), Gaps = 81/342 (23%)

Query: 147 YGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCL--- 203
           Y    +L    +      +   V+D+      + E+  I ++ D        LF  L   
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSK 74

Query: 204 ---------GVHLQI--RWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIR 252
                       L+I  ++L+   + +    S  +       D      +  +   F   
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKY 129

Query: 253 EIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSET--DTVEG 310
            ++R       R+ L               ++     IDG++G+G   +  +        
Sbjct: 130 NVSRLQPYLKLRQAL--------LELRPAKNV----LIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 311 DVYPVEPSDGLTVNQVLDPHW---GVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFAR 367
                         ++    W      N  +T       L ML      +L  +   +  
Sbjct: 178 CKMD---------FKI---FWLNLKNCNSPET------VLEMLQK----LLYQIDPNWTS 215

Query: 368 RGYNIQSLAVG-HAETEGLSRITTVVPATDESISKLMQQLYK--LIDLHEVRDLTHL-PF 423
           R  +  ++ +  H+    L R+             L  + Y+  L+ L  V++      F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRL-------------LKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 424 AERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLE 465
                +L+     TT  + V D  +      + +  H++TL 
Sbjct: 263 NLSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLT 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 70/497 (14%), Positives = 148/497 (29%), Gaps = 124/497 (24%)

Query: 81  ENITEGTFTSR-------STNRTNVRRHTISVFVGDESGMINRIAGVFARRGYN--IESL 131
           +++ +   +         S +  +         +  +  M+ +      R  Y   +  +
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 132 AVGLNKDKALFTI-------VVYGTDKVLQQ--V--MEQLQKLVNVLKVEDLSNEPQVER 180
                +  ++ T         +Y  ++V  +  V  ++   KL   L   +L     V  
Sbjct: 99  KT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLI 155

Query: 181 ELML--------IKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEV 232
           + +L        + V    K + +        +     WL          + E    +  
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCK---MDF-KIF----WLNLKNCNSPETVLEMLQKLLY 207

Query: 233 TGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFSAASYP-------DLN 285
             DP       R+     I+    + +  LRR             +  Y        ++ 
Sbjct: 208 QIDPN---WTSRSDHSSNIKLRIHSIQAELRR----------LLKSKPYENCLLVLLNVQ 254

Query: 286 ETPTIDGL-VGAGHRPLL-----SETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDT 339
                +   +    + LL       TD +             T +  LD H   L  D+ 
Sbjct: 255 NAKAWNAFNLSC--KILLTTRFKQVTDFLSAAT---------TTHISLDHHSMTLTPDEV 303

Query: 340 SGLRSHTLSMLVND--------SPGVLNIVTGVFARRGYN-IQSLAVGHAETEGLSRITT 390
             L    L     D        +P  L+I+     R G     +    H   + L+ I  
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWK--HVNCDKLTTII- 359

Query: 391 VVPATDESISKL----MQQLYKLIDLHEVRDLTHLPFA----------ERELMLIKVAVN 436
                + S++ L     ++++    L       H+P            + ++M++   VN
Sbjct: 360 -----ESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VN 409

Query: 437 TTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVAL-QRLLEPYGICEVARTGRVA 495
              +  +++     + K   +S  +I LEL   L+   AL + +++ Y I +   +  + 
Sbjct: 410 KLHKYSLVEK----QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 496 LVRESGVDSKYLRGYSF 512
                     Y   YS 
Sbjct: 466 PPYLDQ----YF--YSH 476

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKV-LQQVMEQL 160
            I +   D++GM N+I GV ++   NI ++ +          ++++  +   L  +M++L
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKL 66

Query: 161 QKLVNVLKVEDLSNE 175
           +K+  V  VE LSN 
Sbjct: 67  RKVQGVFTVERLSNL 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
2f06_A	144	Conserved hypothetical protein; structural genomic	99.04
2f06_A	144	Conserved hypothetical protein; structural genomic	98.86
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.85
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.71
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.66
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.56
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.45
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	98.01
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.73
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.21
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.05
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.01
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.97
2nyi_A	195	Unknown protein; protein structure initiative, PSI	96.9
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.87
2nyi_A	195	Unknown protein; protein structure initiative, PSI	96.87
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.86
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.63
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	96.48
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.46
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.46
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.42
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.35
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.35
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.33
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.3
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.27
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.2
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.18
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.17
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.06
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	95.94
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	95.85
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.77
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	95.66
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	95.63
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.24
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	94.82
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.73
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	94.33
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	94.2
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.13
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	93.84
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.6
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	93.35
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	93.28
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	92.51
3luy_A	329	Probable chorismate mutase; structural genomics, A	92.21
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	91.78
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	91.43
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	91.41
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.27
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	90.76
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	90.28
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	90.07
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	89.45
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	89.33
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	88.08
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	87.92
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	86.53
2h9z_A	86	Hypothetical protein HP0495; feredoxin-like (beta-	86.0
3ced_A	98	Methionine import ATP-binding protein METN 2; ABC	84.1
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	83.58
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	83.12
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	82.71

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=4.5e-55  Score=416.07  Aligned_cols=170  Identities=38%  Similarity=0.602  Sum_probs=156.6

Q ss_pred             cCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033          328 DPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY  407 (514)
Q Consensus       328 ~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~  407 (514)
                      |+|||-+.+.    +|+|+|+++|+|+||+|+||+++|+||||||+||+++++++++++||||+|+|+++.++||.|||+
T Consensus        17 ~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~   92 (193)
T 2fgc_A           17 LYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAY   92 (193)
T ss_dssp             --------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHT
T ss_pred             hhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence            8999998665    579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccEEEEEecCC--chhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCc
Q 047033          408 KLIDLHEVRDLTH--LPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGI  485 (514)
Q Consensus       408 KLidVikV~dlt~--~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGI  485 (514)
                      ||+||++|.|+++  .++|+||||||||++++. |.||+++|++|||+|||++++++++|+||+++||++|+++|+||||
T Consensus        93 KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi  171 (193)
T 2fgc_A           93 KLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQV  171 (193)
T ss_dssp             TSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGE
T ss_pred             CcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCC
Confidence            9999999999999  999999999999999988 9999999999999999999999999999999999999999999999


Q ss_pred             EEEeecceeEeeccCCc
Q 047033          486 CEVARTGRVALVRESGV  502 (514)
Q Consensus       486 lEvaRTG~vAl~Rg~~~  502 (514)
                      +|++|||++||.||++.
T Consensus       172 ~E~~RtG~val~Rg~~~  188 (193)
T 2fgc_A          172 EEIARTGIVAMNRWNVK  188 (193)
T ss_dssp             EEEEECCCEEEECCCC-
T ss_pred             EEEEccChhheecCCcc
Confidence            99999999999999864

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.2e-52  Score=390.84  Aligned_cols=161  Identities=38%  Similarity=0.579  Sum_probs=157.4

Q ss_pred             cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCC
Q 047033          341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTH  420 (514)
Q Consensus       341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~  420 (514)
                      |-|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++|+++.++||.+||+||+||++|.++++
T Consensus         1 ~~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~   80 (165)
T 2pc6_A            1 GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSS   80 (165)
T ss_dssp             -CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred             CceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccC
Q 047033          421 LPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES  500 (514)
Q Consensus       421 ~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~  500 (514)
                      .++|+||||||||++++.+|.||+++|++|||+|||++++++++|+||+++|+++|+++|+||||+|++|||++||.||+
T Consensus        81 ~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~  160 (165)
T 2pc6_A           81 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE  160 (165)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 047033          501 G  501 (514)
Q Consensus       501 ~  501 (514)
                      +
T Consensus       161 ~  161 (165)
T 2pc6_A          161 R  161 (165)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.1e-51  Score=383.83  Aligned_cols=160  Identities=34%  Similarity=0.532  Sum_probs=157.0

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++|+++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCC-cEEEeecceeEeeccC
Q 047033          422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYG-ICEVARTGRVALVRES  500 (514)
Q Consensus       422 ~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyG-IlEvaRTG~vAl~Rg~  500 (514)
                      ++|+||||||||++++.+|.||+++|++|||+|||++++++++|+||+++|+++|+++|+||| |+|++|||++||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999998


Q ss_pred             C
Q 047033          501 G  501 (514)
Q Consensus       501 ~  501 (514)
                      +
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=5.8e-50  Score=381.00  Aligned_cols=160  Identities=41%  Similarity=0.628  Sum_probs=152.7

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCC-
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN-  174 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~-  174 (514)
                      +|+|+|+++|+|+||+|+||+++|++|||||+||+++++++++  +|||+|+++++.++||.+||+||+||++|.++++ 
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~  106 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL  106 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence            3689999999999999999999999999999999999999986  4999999999999999999999999999999999 


Q ss_pred             -hhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEE
Q 047033          175 -EPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIRE  253 (514)
Q Consensus       175 -~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlE  253 (514)
                       .+.|+||||||||+++++ |.||            ++++++|||||||+++++++||+||+++||++|+++|+||||+|
T Consensus       107 ~~~~v~REl~LiKV~~~~~-r~ei------------~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E  173 (193)
T 2fgc_A          107 PENRVEREMALIKVRFDED-KQEI------------FQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEE  173 (193)
T ss_dssp             GGGEEEEEEEEEEEECSSC-HHHH------------HHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEE
T ss_pred             CCccceeEEEEEEEeCCcC-HHHH------------HHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEE
Confidence             999999999999999888 9999            99999999999999999999999999999999999999999999


Q ss_pred             EeeccceeeecccccCC
Q 047033          254 IARTGKIALRREKLGAS  270 (514)
Q Consensus       254 vaRTG~iAl~R~~~~~~  270 (514)
                      ++|||.+||.||+...+
T Consensus       174 ~~RtG~val~Rg~~~~~  190 (193)
T 2fgc_A          174 IARTGIVAMNRWNVKEG  190 (193)
T ss_dssp             EEECCCEEEECCCC---
T ss_pred             EEccChhheecCCcccc
Confidence            99999999999985433

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=4e-49  Score=367.17  Aligned_cols=157  Identities=45%  Similarity=0.653  Sum_probs=152.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP  176 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~  176 (514)
                      |+|+|+++++|+||+|+||+++|++|||||+||+++++++++  +|||+++++++.++|+++||+||+||++|.++++.+
T Consensus         3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~~   82 (165)
T 2pc6_A            3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEG   82 (165)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGSC
T ss_pred             eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence            589999999999999999999999999999999999999876  499999999999999999999999999999999999


Q ss_pred             hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 047033          177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIAR  256 (514)
Q Consensus       177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaR  256 (514)
                      +|+|||||+||++++++|.|+            ++++++|||||||++++++++|+||+++||++|+++|+||||+|++|
T Consensus        83 ~v~rEl~liKv~~~~~~r~~i------------~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~R  150 (165)
T 2pc6_A           83 YVERELMLVKVRAVGKDREEM------------KRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIAR  150 (165)
T ss_dssp             EEEEEEEEEEEECCTHHHHHH------------HHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEE
T ss_pred             eeeeEEEEEEEeCCcccHHHH------------HHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEc
Confidence            999999999999999999999            99999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecccc
Q 047033          257 TGKIALRREKL  267 (514)
Q Consensus       257 TG~iAl~R~~~  267 (514)
                      ||.+||.||+.
T Consensus       151 tG~~a~~r~~~  161 (165)
T 2pc6_A          151 TGVSGLSRGER  161 (165)
T ss_dssp             CCCEEEESTTC
T ss_pred             cChhheecCcc
Confidence            99999999975

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=2.3e-48  Score=361.52  Aligned_cols=158  Identities=39%  Similarity=0.659  Sum_probs=152.9

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNE  175 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~  175 (514)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++  +|||+++++++.++|+++||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            5789999999999999999999999999999999999999875  59999999999999999999999999999999999


Q ss_pred             hhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEE
Q 047033          176 PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG-IREI  254 (514)
Q Consensus       176 ~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fG-IlEv  254 (514)
                      ++|+|||||+||++++++|.|+            ++++++|||+|||++++++++|+||+++||++|+++|+||| |+|+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i------------~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~  148 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEV------------KRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEV  148 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHH------------HHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEE
T ss_pred             ccceeEEEEEEEECCcccHHHH------------HHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEE
Confidence            9999999999999999999999            99999999999999999999999999999999999999999 9999


Q ss_pred             eeccceeeecccc
Q 047033          255 ARTGKIALRREKL  267 (514)
Q Consensus       255 aRTG~iAl~R~~~  267 (514)
                      +|||.+||.||+.
T Consensus       149 ~RtG~~a~~r~~~  161 (164)
T 2f1f_A          149 ARSGVVGLSRGDK  161 (164)
T ss_dssp             EECCCEEEESTTC
T ss_pred             ECcChhheecCcc
Confidence            9999999999974

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=99.04  E-value=4.4e-09  Score=92.89  Aligned_cols=126  Identities=16%  Similarity=0.192  Sum_probs=88.8

Q ss_pred             ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      ..||.|.|++.++|+||+|+||+++|+++|+||++++++.+.+.++.|++  + .+.+...++.++..-.  +..     
T Consensus         2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~--v~~-----   71 (144)
T 2f06_A            2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFA--VNI-----   71 (144)
T ss_dssp             CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCC--EEE-----
T ss_pred             CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCe--Eee-----
Confidence            35889999999999999999999999999999999999988877787887  3 4666666666654221  111     


Q ss_pred             CchhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEE---e-cCCE--EEEEEecCHHHHHHHHHHhccCCc
Q 047033          420 HLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVD---V-SDHT--ITLELTGDLDKMVALQRLLEPYGI  485 (514)
Q Consensus       420 ~~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVD---v-s~~s--i~iE~TG~~~KIdafi~lL~pyGI  485 (514)
                            ..+.-+.+.-.+..-.++.++....+.+|..   . +...  ++++.    +..+...+.|+..|.
T Consensus        72 ------~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~  133 (144)
T 2f06_A           72 ------TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV  133 (144)
T ss_dssp             ------EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred             ------eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence                  1344556665555567788877777888843   2 3343  44555    356666677776664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.86  E-value=5.6e-08  Score=85.80  Aligned_cols=125  Identities=16%  Similarity=0.218  Sum_probs=82.4

Q ss_pred             cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033           97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP  176 (514)
Q Consensus        97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~  176 (514)
                      .||.|.|+++++|+||+|+||+++|+++|+||++++++.+.+.+.+++++ .+.+...++.++..-.+...         
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~-~d~~~a~~~L~~~G~~v~~~---------   72 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFAVNIT---------   72 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE-SCHHHHHHHHHHTTCCEEEE---------
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe-CCHHHHHHHHHHcCCeEeee---------
Confidence            47899999999999999999999999999999999999888877655554 45555556555542221111         


Q ss_pred             hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCC
Q 047033          177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVD---I-SEY--SLTIEVTGDPGKMVAVQRNLSKFG  250 (514)
Q Consensus       177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVD---v-s~~--s~~iEvTG~~~kIdafi~~L~~fG  250 (514)
                          .+.-+.+.-.|..-+++            .++....+..|..   . ++.  +++++.    +..+...+.|+.-|
T Consensus        73 ----svv~v~~~d~pGvla~i------------~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g  132 (144)
T 2f06_A           73 ----DVVGISCPNVPGALAKV------------LGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKK  132 (144)
T ss_dssp             ----EEEEEEEESSTTHHHHH------------HHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTT
T ss_pred             ----eEEEEEeCCCCcHHHHH------------HHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcC
Confidence                22333443334334444            6666666777733   2 333  355555    35666777777766


Q ss_pred             c
Q 047033          251 I  251 (514)
Q Consensus       251 I  251 (514)
                      .
T Consensus       133 ~  133 (144)
T 2f06_A          133 V  133 (144)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.85  E-value=2.5e-08  Score=79.94  Aligned_cols=77  Identities=19%  Similarity=0.358  Sum_probs=67.3

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEEecCCch
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      .+.|.+.+.|+||+|++|+++|++.|+||.++.+....+  ...+++.+. .+...++++.++|+++.+|.+|..+...+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~   82 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE   82 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            578999999999999999999999999999999987543  778888876 46678999999999999999998776543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.73  E-value=7.7e-08  Score=77.06  Aligned_cols=76  Identities=26%  Similarity=0.431  Sum_probs=64.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecCC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLSN  174 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt~  174 (514)
                      ..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...+++++++|+++-+|.+|..+..
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~   80 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN   80 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            4578999999999999999999999999999999987654223666665 456789999999999999999987654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.71  E-value=1.6e-07  Score=86.79  Aligned_cols=119  Identities=12%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcc----eeeEeecCC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVN----VLKVEDLSN  174 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvd----VikV~dlt~  174 (514)
                      ++++|+++..|+||++++|+++|+++|+||.+.....+.+.-.|++++.+++...+++.++|.++.+    .+.+...+.
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~   84 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSP   84 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            3689999999999999999999999999999999887654444788887776788999999987654    445555443


Q ss_pred             hhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC
Q 047033          175 EPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY  226 (514)
Q Consensus       175 ~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~  226 (514)
                      .+ -.++...+++.+....|+.++        .+|.++...+++.|.++...
T Consensus        85 ~~-~~~~~~~~~l~v~~~D~~Gil--------~~v~~~l~~~~~nI~~~~~~  127 (192)
T 1u8s_A           85 HD-HQTHAYTVEVYVESDDKLGLT--------EKFTQFFAQRQIGMASLSAQ  127 (192)
T ss_dssp             CC-CCCCSEEEEEEEEESCCTTHH--------HHHHHHHHHTTCCEEEEEEE
T ss_pred             CC-CccCCceEEEEEEeCCCccHH--------HHHHHHHHHcCCcHHHhhhh
Confidence            33 245555555655444577661        13466777778888775543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.66  E-value=2.5e-07  Score=85.50  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCcc----EEEEEecC
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLID----LHEVRDLT  419 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLid----VikV~dlt  419 (514)
                      ++.|+|...|+||++++|+++++++|+||..+....+  .+...|++++.+++...+++.++|.++.+    ...+...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~   83 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS   83 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5899999999999999999999999999999888774  46677888888776788999999887653    45566555


Q ss_pred             CchhhheeeEEEEEecCcccH----HHHHHHHHhcCcEEEEecC
Q 047033          420 HLPFAERELMLIKVAVNTTAR----RDVLDIATIFRAKAVDVSD  459 (514)
Q Consensus       420 ~~~~V~REL~LIKV~~~~~~R----~eI~~la~iFrakIVDvs~  459 (514)
                      ..+ -.++....+|.+....|    .+|.++...+++.|.++..
T Consensus        84 ~~~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~  126 (192)
T 1u8s_A           84 PHD-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSA  126 (192)
T ss_dssp             CCC-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCC-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhh
Confidence            433 24444444444333334    3555566667888877643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.56  E-value=1.3e-07  Score=76.79  Aligned_cols=68  Identities=16%  Similarity=0.261  Sum_probs=58.5

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcCccE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-DESISKLMQQLYKLIDL  412 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KLidV  412 (514)
                      |+++|++...|+||+|++|+++++.+|+||.+++.....  +...|++.+... ...++++.++|+++-+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~   72 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT   72 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999998765  677788877643 36789999999987643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.45  E-value=2.2e-07  Score=75.54  Aligned_cols=70  Identities=19%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC-hHHHHHHHHHHhcCcceee
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT-DKVLQQVMEQLQKLVNVLK  168 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd-e~~ieQI~kQLeKLvdVik  168 (514)
                      ++++|.+...|+||+|++|+++++++|+||.++......+...+++.++.. ...++++.++|+++-+...
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~   74 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN   74 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999999999998776333466666533 3578999999998866543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=98.01  E-value=2.1e-05  Score=76.55  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=67.5

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC---CCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET---EGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~---~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++.....   .+...|+|-++..  .+++++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            5789999999999999999999999999999999977651   3688888666644  9999999999999999999998


Q ss_pred             Cchhhhee
Q 047033          420 HLPFAERE  427 (514)
Q Consensus       420 ~~~~V~RE  427 (514)
                      ...-++--
T Consensus        81 ~~~~i~gk   88 (223)
T 1y7p_A           81 SFERVFGK   88 (223)
T ss_dssp             CHHHHTCE
T ss_pred             chhhhcCc
Confidence            76666543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.73  E-value=9.9e-05  Score=71.92  Aligned_cols=143  Identities=17%  Similarity=0.309  Sum_probs=92.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC----CC-cEEEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK----DK-ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te----d~-~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++....    +. ..|+|-++..  .+++++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            567999999999999999999999999999999998765    32 3466445443  9999999999999999999987


Q ss_pred             ChhhHHhheeeEEEecCccccccccc--------------------cccc-cchh--hHHHHHHhcCCEEEEecCCEEEE
Q 047033          174 NEPQVERELMLIKVNADPKFRAEIFL--------------------FPCL-GVHL--QIRWLVDIFRAKIVDISEYSLTI  230 (514)
Q Consensus       174 ~~~~V~REL~LiKV~~~~~~r~EI~~--------------------~~~~-~~~~--~i~~l~~~F~akVVDvs~~s~~i  230 (514)
                      .-..++--=..| + -+..+-+++.+                    -|-- -+++  ++..+.+.-|+.++=.+..-   
T Consensus        81 ~~~~i~gkrvii-~-gggaqv~qva~gai~eadrhnirgerisvdt~p~vge~~l~~av~av~~lpr~~~lvlags~---  155 (223)
T 1y7p_A           81 SFERVFGKRVII-L-GGGALVSQVAIGAISEADRHNLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLAGGI---  155 (223)
T ss_dssp             CHHHHTCEEEEE-E-ECHHHHHHHHHHHHHHHHHHHHTSCCEEEEEEECCSHHHHHHHHHHGGGSTTEEEEEEESSB---
T ss_pred             chhhhcCcEEEE-E-CCcHHHHHHHHhhcchhhhcccccceeeeecceecCHHHHHHHHHHHhhccccceeeEeccc---
Confidence            766555433222 1 12233333311                    1111 3344  46666666666655443221   


Q ss_pred             EEeCChhHHHHHHHHhccCCcE
Q 047033          231 EVTGDPGKMVAVQRNLSKFGIR  252 (514)
Q Consensus       231 EvTG~~~kIdafi~~L~~fGIl  252 (514)
                          =.++|..-++.+++.||.
T Consensus       156 ----mgg~i~~~v~~~~~~~i~  173 (223)
T 1y7p_A          156 ----MGGKITEEVKKLRKSGIR  173 (223)
T ss_dssp             ----CCTHHHHHHHHHGGGTCE
T ss_pred             ----ccchHHHHHHHHHHCCCe
Confidence                146777777777777764

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.21  E-value=0.0045  Score=54.25  Aligned_cols=103  Identities=16%  Similarity=0.251  Sum_probs=75.7

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEEecCCchhh
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVRDLTHLPFA  424 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~dlt~~~~V  424 (514)
                      .|.|...|++|+|+.|+.+++..+.||.++.+.+.   +.  +.+.++ .+.+.+.++..+++++-++.++....-.+. 
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~~~-   75 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPS-   75 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCCTT-
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCCcc-
Confidence            47899999999999999999999999999999665   44  556665 467789999999999999999877553321 


Q ss_pred             heeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEE
Q 047033          425 ERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLEL  466 (514)
Q Consensus       425 ~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~  466 (514)
                                  ...+.....+.+....-|+-+..+.-++-+
T Consensus        76 ------------~~~~~~l~~il~~~~~gvi~~D~~g~I~~~  105 (190)
T 2jhe_A           76 ------------EREHLALSALLEALPEPVLSVDMKSKVDMA  105 (190)
T ss_dssp             ------------THHHHHHHHHHHHCSSCEEEECTTCBEEEE
T ss_pred             ------------HHHHHHHHHHHHhCCCcEEEEcCCCCEEEE
Confidence                        122344555666655556555555544443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.05  E-value=0.0012  Score=69.63  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEe-CChHHHHHHHHHHhcCccEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVP-ATDESISKLMQQLYKLIDLH  413 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVi  413 (514)
                      .+|.|.+.|.|+||||.+|+++|...|++|+|+.-.+.. ..+-..+.|+++ ..+..+++.+++|++|-.|.
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            589999999999999999999999999999998876542 233468888887 57889999999999986653

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.01  E-value=0.0025  Score=66.19  Aligned_cols=73  Identities=12%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      .+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.++|.|-+++....-+.+.++|+++-.|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            4568888999999999999999999999999999985555667787887644668999999999999998754

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.97  E-value=0.0041  Score=64.60  Aligned_cols=73  Identities=21%  Similarity=0.337  Sum_probs=63.7

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      .+.|.+.=+|+||++.+|+.+|+..|+||.++.++.  ..++.-|.+-+++....-+.+.++|+++..|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            467889999999999999999999999999999998  5567778888887644668999999999999999754

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=96.90  E-value=0.0072  Score=56.25  Aligned_cols=117  Identities=12%  Similarity=0.104  Sum_probs=76.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEecCh----HHHHHHHHHHhcCcceeeEee-c
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVYGTD----KVLQQVMEQLQKLVNVLKVED-L  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~gde----~~ieQI~kQLeKLvdVikV~d-l  172 (514)
                      ++++|.|.-.|+||++++|++.++++|.||.......+.+ .. |++.+..+.    ...+++.+.|.++..=..+.. +
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~-~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~   82 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGG-DFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSV   82 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETT-EEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECC-eEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence            5789999999999999999999999999999988876432 33 566665332    237888888876653211110 0


Q ss_pred             CCh-hhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC
Q 047033          173 SNE-PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY  226 (514)
Q Consensus       173 t~~-~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~  226 (514)
                      ... ..-..+-..+.|.+.  .|+.|+        .+|.++.-.+++.|.++...
T Consensus        83 ~~~~~~~~~~~~iltv~g~--DrpGiv--------a~Vt~~La~~g~nI~~~~~~  127 (195)
T 2nyi_A           83 AERHVSPDTREYELYVEGP--DSEGIV--------EAVTAVLAKKGANIVELETE  127 (195)
T ss_dssp             ----CCTTEEEEEEEEEEE--CCTTHH--------HHHHHHHHHTTCEEEEEEEE
T ss_pred             EeCCcCCCCcEEEEEEEeC--CCcCHH--------HHHHHHHHHcCCCEEEceee
Confidence            000 011124456666653  255441        14578888889999987654

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.87  E-value=0.0067  Score=53.09  Aligned_cols=69  Identities=13%  Similarity=0.300  Sum_probs=58.5

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecC
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      .|.|...|++|+|+.|+.+++..++||.++.+.+.   +.+.+.+. .+.+.+.++..+++++-++.++....
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~   71 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP   71 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence            47889999999999999999999999999999655   44666665 45678999999999999999876643

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=96.87  E-value=0.017  Score=53.69  Aligned_cols=115  Identities=13%  Similarity=0.055  Sum_probs=76.4

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh----HHHHHHHHHHhcCccEEEEEe-
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD----ESISKLMQQLYKLIDLHEVRD-  417 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde----~~ieQI~kQL~KLidVikV~d-  417 (514)
                      +++.|.|...|+||+.++|++.++++|.||.....-.+.+  .--|++.+..+.    ...++|.+.|.++..=..+.. 
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~--~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~   81 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGG--DFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASS   81 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETT--EEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECC--eEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEE
Confidence            4689999999999999999999999999999988876443  232344443221    237888888876642211110 


Q ss_pred             c--CCchhhheeeEEEEEecCcc--cHHHHHHHHHhcCcEEEEecCC
Q 047033          418 L--THLPFAERELMLIKVAVNTT--ARRDVLDIATIFRAKAVDVSDH  460 (514)
Q Consensus       418 l--t~~~~V~REL~LIKV~~~~~--~R~eI~~la~iFrakIVDvs~~  460 (514)
                      +  ... .-..+-..+.|.+...  --.+|-++...+++.|.++...
T Consensus        82 ~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~  127 (195)
T 2nyi_A           82 VAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE  127 (195)
T ss_dssp             C----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence            0  000 1234667888877531  1256677777889999998654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.86  E-value=0.0024  Score=67.42  Aligned_cols=73  Identities=11%  Similarity=0.159  Sum_probs=57.7

Q ss_pred             cccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-C--CcEEEEEEe-cChHHHHHHHHHHhcCccee
Q 047033           95 RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-D--KALFTIVVY-GTDKVLQQVMEQLQKLVNVL  167 (514)
Q Consensus        95 ~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d--~~~~TIVv~-gde~~ieQI~kQLeKLvdVi  167 (514)
                      ..-..+|.|.+.|.|+||||.+|+++|...|++|+|+...+.. +  ...+-|+++ ..+..+++.+++|++|-.|.
T Consensus       354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            3445789999999999999999999999999999999876542 1  223555565 57899999999999987664

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.63  E-value=0.17  Score=55.20  Aligned_cols=293  Identities=13%  Similarity=0.115  Sum_probs=154.0

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecCh-HHHHHHHHHHhcCc-------ceeeEeecCChh
Q 047033          106 FVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTD-KVLQQVMEQLQKLV-------NVLKVEDLSNEP  176 (514)
Q Consensus       106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde-~~ieQI~kQLeKLv-------dVikV~dlt~~~  176 (514)
                      .+.++||++.||-+.|++.|+|++-++.+..++. .-+++++..++ ....++.+++.+-+       ...+|.      
T Consensus       277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~------  350 (600)
T 3l76_A          277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII------  350 (600)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE------
T ss_pred             CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE------
Confidence            5678999999999999999999999987776543 23777776543 23333344333222       112222      


Q ss_pred             hHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEe
Q 047033          177 QVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIA  255 (514)
Q Consensus       177 ~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEva  255 (514)
                       +++.+++|-|--.. ..++.+        --.+++.....+-.|.-++....-|.+.=+.+..+..++.|..--.++. 
T Consensus       351 -~~~~~a~VsvVG~gm~~~~Gv--------~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~-  420 (600)
T 3l76_A          351 -VEKGIAKIAIAGAGMIGRPGI--------AAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL-  420 (600)
T ss_dssp             -EECSEEEEEEECGGGTTCTTH--------HHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB-
T ss_pred             -ecCCeEEEEEECCCcccCccH--------HHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC-
Confidence             34456666654322 223333        0022444444455544443333333333344455555555543221110 


Q ss_pred             eccceeeecccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCccccc
Q 047033          256 RTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLN  335 (514)
Q Consensus       256 RTG~iAl~R~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~  335 (514)
                               .+....           .+                              +.|       .++..   |+-.
T Consensus       421 ---------t~~~~~-----------~~------------------------------~~~-------~~~v~---Gia~  440 (600)
T 3l76_A          421 ---------SPPKNQ-----------TD------------------------------TSH-------LPAVR---GVAL  440 (600)
T ss_dssp             ---------CCCCCC-----------CC----------------------------------------CCSCC---EEEE
T ss_pred             ---------CCcccc-----------cc------------------------------ccc-------cCceE---EEEe
Confidence                     000000           00                              000       00000   1111


Q ss_pred             CCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC--CC--eeEEEEEEeC-ChHHHHHHHHHHhcCc
Q 047033          336 DDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET--EG--LSRITTVVPA-TDESISKLMQQLYKLI  410 (514)
Q Consensus       336 ~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~--~~--iSRiTIVV~g-de~~ieQI~kQL~KLi  410 (514)
                      +.+.   .+-++. -+.|+||+..||-+.+++.|+|++=+.....++  .+  ...|+++++. +-+...++.+++.+-+
T Consensus       441 ~~~~---a~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~  516 (600)
T 3l76_A          441 DQDQ---AQIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDW  516 (600)
T ss_dssp             ECSE---EEEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTS
T ss_pred             eCCE---EEEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhc
Confidence            1111   133443 589999999999999999999999998887664  24  6789999983 2233444455544433


Q ss_pred             cEEEEEecCCchhhheeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc-cCC
Q 047033          411 DLHEVRDLTHLPFAERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE-PYG  484 (514)
Q Consensus       411 dVikV~dlt~~~~V~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~-pyG  484 (514)
                      +-.+|       .++..++.|-|--..     .--..+++.-..-+-+|.=++..-+.|-+.=+.+..+..++.|- .|+
T Consensus       517 ~~~~v-------~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~  589 (600)
T 3l76_A          517 LDAAI-------VVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFN  589 (600)
T ss_dssp             TTCEE-------EEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred             CCceE-------EEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhC
Confidence            32222       234556666553221     11245555555555566555555555555555666666665553 455


Q ss_pred             c
Q 047033          485 I  485 (514)
Q Consensus       485 I  485 (514)
                      +
T Consensus       590 l  590 (600)
T 3l76_A          590 L  590 (600)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=96.48  E-value=0.014  Score=52.90  Aligned_cols=115  Identities=11%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             EEEEEE-EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCch
Q 047033          345 HTLSML-VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       345 htLSIl-VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      ..|++. +.|+||.+.+|...|++.|+||+-++.+.+.+ +...++++++.++ +...++.+++.+-....       .-
T Consensus        26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~-------~i   97 (167)
T 2re1_A           26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAA-------SI   97 (167)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCS-------EE
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCc-------eE
Confidence            355666 79999999999999999999999999876544 5667999998532 23344444433223321       11


Q ss_pred             hhheeeEEEEEecCc-----ccHHHHHHHHHhcCcEE--EEecCCEEEEEEe
Q 047033          423 FAERELMLIKVAVNT-----TARRDVLDIATIFRAKA--VDVSDHTITLELT  467 (514)
Q Consensus       423 ~V~REL~LIKV~~~~-----~~R~eI~~la~iFrakI--VDvs~~si~iE~T  467 (514)
                      .+.+.+++|.|-...     .--..+++....++..|  +..+..++.+=+-
T Consensus        98 ~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv~  149 (167)
T 2re1_A           98 DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLID  149 (167)
T ss_dssp             EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEE
T ss_pred             EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEe
Confidence            234567888876543     12357777777777776  4445555555553

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.46  E-value=0.013  Score=61.50  Aligned_cols=74  Identities=14%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      ..|.|.+.=+|.||||.+|+.+|++.|+||+...-....+-++.-+-+++.....+.+.++|+++-.|++|..+
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            45789999999999999999999999999999997666666666566664355678999999999999998754

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.46  E-value=0.0061  Score=61.45  Aligned_cols=67  Identities=10%  Similarity=0.143  Sum_probs=52.2

Q ss_pred             cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecCh--HHHHHHHHHHhcC
Q 047033           97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTD--KVLQQVMEQLQKL  163 (514)
Q Consensus        97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde--~~ieQI~kQLeKL  163 (514)
                      ++++++|++.-.|+||+.++||+.++.+|.||..+........++  |.+.++.++  ..++++.+.|+.+
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~l   89 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI   89 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999875544565  566666432  3466776666543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.42  E-value=0.0063  Score=61.38  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=53.0

Q ss_pred             ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHh
Q 047033          340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLY  407 (514)
Q Consensus       340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~  407 (514)
                      .|+.+++|++...|+||+.++|++.++.+|.||..++.-.....+.--|.+.+..++  ...+++.+.|+
T Consensus        18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~   87 (302)
T 3o1l_A           18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT   87 (302)
T ss_dssp             CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred             cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence            467889999999999999999999999999999999887555566666666665432  24566665554

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.35  E-value=0.0068  Score=60.76  Aligned_cols=66  Identities=12%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecC----hHHHHHHHHHHhcC
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGT----DKVLQQVMEQLQKL  163 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gd----e~~ieQI~kQLeKL  163 (514)
                      +++++|++.-.|+||+.++||+.++.+|.||..+........++  |.+.++.+    ...++++...|+.+
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l   79 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI   79 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence            56789999999999999999999999999999999875444455  56665544    23466666666543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.35  E-value=0.0046  Score=66.03  Aligned_cols=72  Identities=17%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      .-|+|-+...|+||++.+|+.++...|+||.++.++..+..  +.|.|.++..  .-+.+.++|.++-+|.+|..+
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence            45899999999999999999999999999999999987644  4577777642  234566666676777766543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.33  E-value=0.0071  Score=60.40  Aligned_cols=65  Identities=5%  Similarity=-0.041  Sum_probs=48.7

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecC-hHHHHHHHHHHhc
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGT-DKVLQQVMEQLQK  162 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gd-e~~ieQI~kQLeK  162 (514)
                      |++++|++.-.|+||+.++||+.|+.+|.||..++.......++  |.+.++.+ +..++++.+.++.
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~   73 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE   73 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence            56789999999999999999999999999999999875444555  66666542 2335556555543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.30  E-value=0.0054  Score=65.47  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      .|+|-+...|+||++.+|+.++...|+||.++.++..+..+..=|.|.++.  ..-+.+.++|.++.+|.+|..+
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~--~~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEE
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC--CCCHHHHHHHhcCCCccEEEEE
Confidence            489999999999999999999999999999999999887777778787773  3345566777777788777654

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.27  E-value=0.0085  Score=59.91  Aligned_cols=65  Identities=11%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecCh--HHHHHHHHHHhcC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTD--KVLQQVMEQLQKL  163 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde--~~ieQI~kQLeKL  163 (514)
                      .+++|++.-.|+||+.++||+.++.+|.||..+....+...++  |.+.++.++  ..++++.+.|+.+
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~l   73 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVI   73 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999875555565  555555432  3566777666543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.20  E-value=0.009  Score=59.68  Aligned_cols=64  Identities=14%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhc
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeK  162 (514)
                      ++++|++.-.|+||+.++||+.++.+|.||..++.-.+...++  |.+.++.+...++++.+.|+.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~   71 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGK   71 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHH
Confidence            5689999999999999999999999999999999875555565  566666543334456555543

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.18  E-value=0.009  Score=59.71  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC--hHHHHHHHHHHhcC---ccE-EEEEe
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT--DESISKLMQQLYKL---IDL-HEVRD  417 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd--e~~ieQI~kQL~KL---idV-ikV~d  417 (514)
                      +++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.+..+  ...++++...|+.+   .++ +++.+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~   85 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD   85 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence            6899999999999999999999999999999998655555655555555432  23455565555432   222 45555


Q ss_pred             cCCchhhheeeEEEEEecCcccHHHHHHHHHh--cCcEEEEe
Q 047033          418 LTHLPFAERELMLIKVAVNTTARRDVLDIATI--FRAKAVDV  457 (514)
Q Consensus       418 lt~~~~V~REL~LIKV~~~~~~R~eI~~la~i--FrakIVDv  457 (514)
                      -...   .| + .|=++-...+-..+++-++.  ..++|+-|
T Consensus        86 ~~~~---~r-i-~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V  122 (288)
T 3obi_A           86 RETR---RK-V-MLLVSQSDHCLADILYRWRVGDLHMIPTAI  122 (288)
T ss_dssp             TTSC---EE-E-EEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred             cCCC---cE-E-EEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence            4321   12 2 22233333444455554432  34565554

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.17  E-value=0.0095  Score=59.72  Aligned_cols=68  Identities=16%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC----hHHHHHHHHHHh
Q 047033          340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT----DESISKLMQQLY  407 (514)
Q Consensus       340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd----e~~ieQI~kQL~  407 (514)
                      ..|++++|++...|+||+.++|++.++.+|.||..+........+.--|.+.+..+    ...++++...|+
T Consensus         6 ~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~   77 (292)
T 3lou_A            6 QRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE   77 (292)
T ss_dssp             --CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred             CCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence            34568999999999999999999999999999999988754445555555555543    234555655554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.06  E-value=0.013  Score=58.60  Aligned_cols=65  Identities=12%  Similarity=0.036  Sum_probs=48.5

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HHHHHHHHHH
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ESISKLMQQL  406 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~ieQI~kQL  406 (514)
                      |.+++|++...|+||+.++|++.++.+|.||..++.......+.--|.+.++.++ ..++++...|
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f   71 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGL   71 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence            4568999999999999999999999999999999887545556555666665422 2345555444

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=95.94  E-value=0.061  Score=54.47  Aligned_cols=141  Identities=13%  Similarity=0.111  Sum_probs=88.3

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--HHHHHHHHHhcC---cc-EEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--SISKLMQQLYKL---ID-LHEVR  416 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--~ieQI~kQL~KL---id-VikV~  416 (514)
                      .+++|++.-.|+||+.++|++.++++|.||..+.....  .+.--|.+.+..++.  ..+++.+.|..+   .+ -+++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            36899999999999999999999999999999887653  455556666665544  346676666554   22 25566


Q ss_pred             ecCCchhhhe-eeEEEEEecCc---ccHHHHHHHHHhcCcEEEEecCCE------EEEEEecCH---HHHH-HHHHHhcc
Q 047033          417 DLTHLPFAER-ELMLIKVAVNT---TARRDVLDIATIFRAKAVDVSDHT------ITLELTGDL---DKMV-ALQRLLEP  482 (514)
Q Consensus       417 dlt~~~~V~R-EL~LIKV~~~~---~~R~eI~~la~iFrakIVDvs~~s------i~iE~TG~~---~KId-afi~lL~p  482 (514)
                      +.+......+ ...++-+-...   ..-.+|.++...++.+|-++..-+      +-+.+.+++   +.+. ++.++...
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~  168 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE  168 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence            6554432222 34444443332   223566666666778888776555      335555554   3333 34455566


Q ss_pred             CCc
Q 047033          483 YGI  485 (514)
Q Consensus       483 yGI  485 (514)
                      +++
T Consensus       169 ~~v  171 (415)
T 3p96_A          169 EHV  171 (415)
T ss_dssp             HTC
T ss_pred             cCc
Confidence            675

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=95.85  E-value=0.017  Score=57.76  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh---cCccE-EEEEec
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY---KLIDL-HEVRDL  418 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~---KLidV-ikV~dl  418 (514)
                      ++++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.+..+....+++...|+   +-.++ +++.+-
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~~   85 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFRPR   85 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEeecc
Confidence            46899999999999999999999999999999998755566766677777654333445554443   32333 555554


Q ss_pred             CCchhhheeeEEEEEecCcccHHHHHHHHH--hcCcEEEEe
Q 047033          419 THLPFAERELMLIKVAVNTTARRDVLDIAT--IFRAKAVDV  457 (514)
Q Consensus       419 t~~~~V~REL~LIKV~~~~~~R~eI~~la~--iFrakIVDv  457 (514)
                      ...   .| + .|=++-...+-..+++-++  ...++|+-|
T Consensus        86 ~~~---~r-i-~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V  121 (287)
T 3nrb_A           86 TDR---KK-V-VIMVSKFDHCLGDLLYRHRLGELDMEVVGI  121 (287)
T ss_dssp             TCC---CE-E-EEEECSCCHHHHHHHHHHHHTSSCCEEEEE
T ss_pred             CCC---cE-E-EEEEeCCCcCHHHHHHHHHCCCCCeEEEEE
Confidence            321   12 2 2223334444455555443  235666654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.77  E-value=0.037  Score=58.09  Aligned_cols=73  Identities=19%  Similarity=0.293  Sum_probs=59.8

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      .|-|.+.=+|.||+|.+|+.+|+..|+||+...-....+-++  ..+=+++..+.-+.+.++|+++-.|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y--~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY--LVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE--EEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            588999999999999999999999999999988666544433  4444443366778999999999999999754

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=95.66  E-value=0.023  Score=51.45  Aligned_cols=128  Identities=16%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             EEEEEE-EeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecCh-HHHHHHHHHHhcCcceeeEeecCChh
Q 047033          101 HTISVF-VGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTD-KVLQQVMEQLQKLVNVLKVEDLSNEP  176 (514)
Q Consensus       101 h~Isvl-VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde-~~ieQI~kQLeKLvdVikV~dlt~~~  176 (514)
                      ..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +  .+++++..++ +...++.+++.+-.....       -
T Consensus        26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~-------i   97 (167)
T 2re1_A           26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAAS-------I   97 (167)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSE-------E
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCce-------E
Confidence            456666 89999999999999999999999999876654 4  4778887533 223333333322223211       1


Q ss_pred             hHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEE--EEecCCEEEEEEeCChhHHHHHHHHh
Q 047033          177 QVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKI--VDISEYSLTIEVTGDPGKMVAVQRNL  246 (514)
Q Consensus       177 ~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akV--VDvs~~s~~iEvTG~~~kIdafi~~L  246 (514)
                      .+.+.++++-|-... ...+.+.        -.+++....++-.|  +..++.++.+=+-.  +..+..++.|
T Consensus        98 ~~~~~~a~vsvvG~~m~~~~Gv~--------a~i~~aL~~~~InI~~istse~~is~vv~~--~d~~~av~~L  160 (167)
T 2re1_A           98 DGDDTVCKVSAVGLGMRSHVGVA--------AKIFRTLAEEGINIQMISTSEIKVSVLIDE--KYMELATRVL  160 (167)
T ss_dssp             EEESSEEEEEEECSSCTTCCCHH--------HHHHHHHHHTTCCCCEEEECSSEEEEEEEG--GGHHHHHHHH
T ss_pred             EecCCEEEEEEECCCcCCCcCHH--------HHHHHHHHHCCCcEEEEEcccCEEEEEEeH--HHHHHHHHHH
Confidence            234556777665432 2222220        02355555656666  44455655555533  3344444443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=95.63  E-value=0.077  Score=53.72  Aligned_cols=142  Identities=16%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChH--HHHHHHHHHhcCc---ce-eeEe
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDK--VLQQVMEQLQKLV---NV-LKVE  170 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~--~ieQI~kQLeKLv---dV-ikV~  170 (514)
                      ++++|++.-.|+||+.++|++.++++|.||..+.....  .+.  |.+.+..++.  .++++.+.|+.+-   .+ +++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            57899999999999999999999999999999987653  355  5555665543  3467777775542   22 3444


Q ss_pred             ecCChhhHHh-heeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCE------EEEEEeCCh---hHHH
Q 047033          171 DLSNEPQVER-ELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYS------LTIEVTGDP---GKMV  240 (514)
Q Consensus       171 dlt~~~~V~R-EL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s------~~iEvTG~~---~kId  240 (514)
                      +.+......+ ...++-+-.. ..+.++        -.+|.+....++..|.++..-+      +-+.+.+.+   ..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~-~~~~~~--------~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~  159 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGR-PITAAA--------FGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALR  159 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEES-SCCHHH--------HHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeC-CCCHHH--------HHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHH
Confidence            4433211111 1111111111 111121        1155777777788888776555      335565654   3333


Q ss_pred             -HHHHHhccCCc
Q 047033          241 -AVQRNLSKFGI  251 (514)
Q Consensus       241 -afi~~L~~fGI  251 (514)
                       ++.++...+++
T Consensus       160 ~~l~~l~~~~~v  171 (415)
T 3p96_A          160 TALNRVSSEEHV  171 (415)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHhhhcCc
Confidence             34455566775

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.24  E-value=0.12  Score=51.79  Aligned_cols=73  Identities=12%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV  415 (514)
                      .|-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. .+-..+-|=++|  ++..+++..+.|++.-.-+++
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            3678888889999999999999999999999999999875 455667777776  456799999999988665554

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=94.82  E-value=0.23  Score=45.51  Aligned_cols=125  Identities=18%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             EEEE-EEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChHHHHHHHHHHhcC---ccEEEEEecCC
Q 047033          346 TLSM-LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDESISKLMQQLYKL---IDLHEVRDLTH  420 (514)
Q Consensus       346 tLSI-lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~~ieQI~kQL~KL---idVikV~dlt~  420 (514)
                      .|++ .+.|+||.+.+|...+++.|+||+-++.+.... .+...|++++..+  ..++..+.|+++   .....+     
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~--d~~~a~~~l~~~~~~~~~~~v-----   89 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS--DGRRAMEILKKLQVQGNWTNV-----   89 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH--HHHHHHHHHHTTTTTTTCSEE-----
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc--cHHHHHHHHHHHHHhcCCCeE-----
Confidence            3444 468999999999999999999999998764321 2356788888743  234444445543   222112     


Q ss_pred             chhhheeeEEEEEecCcc-cH----HHHHHHHHhcCcEE--EEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033          421 LPFAERELMLIKVAVNTT-AR----RDVLDIATIFRAKA--VDVSDHTITLELTGDLDKMVALQRLLE  481 (514)
Q Consensus       421 ~~~V~REL~LIKV~~~~~-~R----~eI~~la~iFrakI--VDvs~~si~iE~TG~~~KIdafi~lL~  481 (514)
                        .+.+++++|-|-...- .+    ..+++.....+-+|  +.-+...+.+=+  +.+..+..++.|.
T Consensus        90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh  153 (178)
T 2dtj_A           90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALH  153 (178)
T ss_dssp             --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHH
T ss_pred             --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHH
Confidence              3356788888864322 22    34555444444555  444555544444  4455555555444

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.73  E-value=0.18  Score=50.49  Aligned_cols=72  Identities=22%  Similarity=0.401  Sum_probs=58.1

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV  169 (514)
                      ..+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + |-|-++|  ++..+++..+.|++.-.-+++
T Consensus       198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            356788888899999999999999999999999999998754 3 3 5555665  567789999999888655554

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=94.33  E-value=0.18  Score=45.47  Aligned_cols=122  Identities=13%  Similarity=0.150  Sum_probs=71.8

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCchhhheee
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLPFAEREL  428 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~~~V~REL  428 (514)
                      +.|+||++.||.+.+++.|+||+-++.+.+. +.+...++++++.++ +...++.+++.+-... .|.       +++.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987652 335567999998433 2233333333222222 332       34678


Q ss_pred             EEEEEecCcc-cH----HHHHHHHHhcCcEE--EEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033          429 MLIKVAVNTT-AR----RDVLDIATIFRAKA--VDVSDHTITLELTGDLDKMVALQRLLEP  482 (514)
Q Consensus       429 ~LIKV~~~~~-~R----~eI~~la~iFrakI--VDvs~~si~iE~TG~~~KIdafi~lL~p  482 (514)
                      ++|-|-...- .+    ..+++.....+-+|  +.-+...+  -+.=+.+..+..++.|..
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~i--s~vv~~~d~~~Av~~Lh~  154 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRI--SVIIPAEYAEAALRAVHQ  154 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEE--EEEEEGGGHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEE--EEEEeHHHHHHHHHHHHH
Confidence            8887755431 12    34555444444555  44343333  333344555555555543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=94.20  E-value=0.21  Score=46.27  Aligned_cols=124  Identities=12%  Similarity=0.097  Sum_probs=71.9

Q ss_pred             EEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCchhhhee
Q 047033          350 LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLPFAERE  427 (514)
Q Consensus       350 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~~~V~RE  427 (514)
                      -+.|+||++.||.+.|++.|.||+-++...++ +.+...++++++.++ +...++.+++.+-+...+|       .+.+.
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v-------~~~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQL-------LYDDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEE-------EEESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceE-------EEeCC
Confidence            47899999999999999999999999876655 357778999998554 3334444443221221122       22456


Q ss_pred             eEEEEEecCc-ccH----HHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHh
Q 047033          428 LMLIKVAVNT-TAR----RDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLL  480 (514)
Q Consensus       428 L~LIKV~~~~-~~R----~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL  480 (514)
                      +++|-|--.. .++    ..+++.....+-+|.-++...+.+-+.=+.+..+..++.|
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aL  153 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVAL  153 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHH
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHH
Confidence            7777764322 122    3455554444555544433333333333444444444444

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.13  E-value=0.15  Score=51.73  Aligned_cols=72  Identities=21%  Similarity=0.309  Sum_probs=58.2

Q ss_pred             ccceeEEEEEEEe-CcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCcc
Q 047033          340 SGLRSHTLSMLVN-DSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLID  411 (514)
Q Consensus       340 ~~~~khtLSIlVe-N~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLid  411 (514)
                      .+-.|-+|.+.+. |+||.|.++.+.|+.||+|+..|.--|+.. .+-..+-|=+.|  ++..+.+..+.|++.-.
T Consensus       197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~  272 (313)
T 3mwb_A          197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP  272 (313)
T ss_dssp             CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence            3445778888884 999999999999999999999999988764 455677777877  56678888888887643

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=93.84  E-value=0.24  Score=50.24  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=56.4

Q ss_pred             cceEEEEEEEE-eCchhHHHHHHHHHhccCceeeeEEeeecCCC--cE-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033           97 NVRRHTISVFV-GDESGMINRIAGVFARRGYNIESLAVGLNKDK--AL-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        97 ~~~~h~IsvlV-eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~-~TIVv~g--de~~ieQI~kQLeKLvdVikV  169 (514)
                      ...+-.|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+...  .+ |-|-++|  ++..+.+..+.|++.-.-+++
T Consensus       198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~ki  276 (313)
T 3mwb_A          198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRF  276 (313)
T ss_dssp             SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEE
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEE
Confidence            34677888888 49999999999999999999999998887654  23 5555665  567788888888876443333

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.60  E-value=0.2  Score=49.79  Aligned_cols=70  Identities=13%  Similarity=0.204  Sum_probs=56.1

Q ss_pred             eEEEEEEEE---eCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E---EEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033           99 RRHTISVFV---GDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L---FTIVVYGTDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus        99 ~~h~IsvlV---eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~---~TIVv~gde~~ieQI~kQLeKLvdVikV  169 (514)
                      .+-.|.+.+   .|+||.|.++.+.|+.||+|+..|---|+... + +   +.+. +-++..+.+..++|++.-.-+++
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence            456788888   89999999999999999999999999988654 2 2   3444 55677899999999887655554

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=93.35  E-value=0.65  Score=41.80  Aligned_cols=125  Identities=15%  Similarity=0.169  Sum_probs=68.4

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecC-CCc--EEEEEEecCh-HHHHHHHHHHhcCcceeeEeecCChhhHHhhe
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNK-DKA--LFTIVVYGTD-KVLQQVMEQLQKLVNVLKVEDLSNEPQVEREL  182 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~--~~TIVv~gde-~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL  182 (514)
                      +.|+||++.|+.+.|++.|+||+-++.+.+. +.+  -+++++..++ +...++.+++.+-... .|.       +++.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987652 334  4788887533 2233333332222221 222       23456


Q ss_pred             eeEEEecCc-cccccccccccccchhhHHHHHHhcCCEE--EEecCCEEEEEEeCChhHHHHHHHHhccC
Q 047033          183 MLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKI--VDISEYSLTIEVTGDPGKMVAVQRNLSKF  249 (514)
Q Consensus       183 ~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akV--VDvs~~s~~iEvTG~~~kIdafi~~L~~f  249 (514)
                      +++-|-... ...+.+.        -.+++.....+-.|  +.-++.+  +-+.=+.+..+..++.|..-
T Consensus        96 a~vsvVG~gm~~~~Gv~--------a~~f~aL~~~~InI~~is~Se~~--is~vv~~~d~~~Av~~Lh~~  155 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVP--------AKMFQAVASTGANIEMIATSEVR--ISVIIPAEYAEAALRAVHQA  155 (167)
T ss_dssp             EEEEEEESSGGGSTHHH--------HHHHHHHHHTTCCCCEEEECSSE--EEEEEEGGGHHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHH--------HHHHHHHHHCCCCEEEEEccCCE--EEEEEeHHHHHHHHHHHHHH
Confidence            666554322 2233330        01233334444455  4434443  33333455566666666543

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=93.28  E-value=0.26  Score=44.07  Aligned_cols=110  Identities=7%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEE
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLI  431 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LI  431 (514)
                      .++||++.||.+.|++.|.||+-++.++.      +++++++.++ .++++.+.|.+.   ..|       .+.+.+++|
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~~---~~v-------~~~~~~a~v   91 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSDI---GDV-------TVDKDMVII   91 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTTT---EEE-------EEEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhcc---CeE-------EEeCCeEEE
Confidence            37899999999999999999999986542      7999998554 678888888772   111       234567888


Q ss_pred             EEecCc-----ccHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHh
Q 047033          432 KVAVNT-----TARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLL  480 (514)
Q Consensus       432 KV~~~~-----~~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL  480 (514)
                      -|--..     ..-..+++...  +-.|.-++  .....+.+.=+.+..+..++.|
T Consensus        92 svvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~L  145 (157)
T 3mah_A           92 CIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIAL  145 (157)
T ss_dssp             EEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHH
T ss_pred             EEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHH
Confidence            765332     11234444333  44443433  2233344444445555555444

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=92.51  E-value=0.46  Score=47.16  Aligned_cols=72  Identities=26%  Similarity=0.304  Sum_probs=57.4

Q ss_pred             eEEEEEEE---eCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          344 SHTLSMLV---NDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       344 khtLSIlV---eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      |-+|.+.+   .|+||.|.++.+.|+.||+|+..|.--|+.. .+-..+-|=++ -++..+.+..++|++.-.-+++
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence            56788888   8999999999999999999999999999865 34455555554 4567799999999887655544

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=92.21  E-value=0.5  Score=48.24  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             EEEEEEEe--CcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC--hHHHHHHHHHHhcCccEEEE
Q 047033          345 HTLSMLVN--DSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT--DESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       345 htLSIlVe--N~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd--e~~ieQI~kQL~KLidVikV  415 (514)
                      -++.+.+.  |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|-++|.  +..+.+..+.|++.-.-+++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            34444444  799999999999999999999999998765 3455666667764  57799999999888665554

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=91.78  E-value=0.35  Score=51.20  Aligned_cols=74  Identities=12%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEE-ecChHHHHHHHHHHhcC-cceeeEe
Q 047033           97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVV-YGTDKVLQQVMEQLQKL-VNVLKVE  170 (514)
Q Consensus        97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv-~gde~~ieQI~kQLeKL-vdVikV~  170 (514)
                      +..+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... +-  +-|-+ +.++..+.++++.|.+. ..-++|.
T Consensus        31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL  109 (429)
T 1phz_A           31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL  109 (429)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence            3457788888999999999999999999999999998887653 32  22222 33455688999999988 5555554

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=91.43  E-value=0.57  Score=41.84  Aligned_cols=50  Identities=8%  Similarity=0.095  Sum_probs=41.0

Q ss_pred             eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033          108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK  162 (514)
Q Consensus       108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK  162 (514)
                      .++||++.|+.+.|++.|+||+-++.++    ..+++++...+ .++++.+.|.+
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~   78 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSD   78 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTT
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhc
Confidence            4789999999999999999999998643    26778887554 67888888877

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=91.41  E-value=0.58  Score=42.78  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             EEEE-EEeCchhHHHHHHHHHhccCceeeeEEeeecC--CC-cEEEEEEecChHHHHHHHHHHhcC
Q 047033          102 TISV-FVGDESGMINRIAGVFARRGYNIESLAVGLNK--DK-ALFTIVVYGTDKVLQQVMEQLQKL  163 (514)
Q Consensus       102 ~Isv-lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~-~~~TIVv~gde~~ieQI~kQLeKL  163 (514)
                      .|++ .+.|+||.+.+|...|++.|+||+-++.+...  +. ..+++++..++  .++..+.|+++
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~   80 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKL   80 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTT
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHH
Confidence            4555 47999999999999999999999999876432  32 23677766433  34444555543

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.27  E-value=0.7  Score=47.16  Aligned_cols=69  Identities=13%  Similarity=0.281  Sum_probs=52.3

Q ss_pred             EEEEEEEe--CchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033          101 HTISVFVG--DESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus       101 h~IsvlVe--N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV  169 (514)
                      -++.+.+.  |+||.|.++.+.|+.||+|+..|.--|+... + + |=|-++|  ++..+.+..+.|++.-.-+++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            34444444  7999999999999999999999998888654 2 2 5556665  467788999999888654444

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=90.76  E-value=0.63  Score=49.25  Aligned_cols=76  Identities=12%  Similarity=0.098  Sum_probs=57.0

Q ss_pred             cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEe-CChHHHHHHHHHHhcC-ccEEEEE
Q 047033          341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVP-ATDESISKLMQQLYKL-IDLHEVR  416 (514)
Q Consensus       341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~-gde~~ieQI~kQL~KL-idVikV~  416 (514)
                      |-.|-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... .-..+-|=+. -++..+.++++.|.+. ..-++|-
T Consensus        31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL  109 (429)
T 1phz_A           31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL  109 (429)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence            4447788888899999999999999999999999999888643 3333333333 2344588999999998 5555553

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=90.28  E-value=1.8  Score=44.76  Aligned_cols=126  Identities=15%  Similarity=0.209  Sum_probs=76.5

Q ss_pred             EEEEE-EeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCC-hHHHHHHHHHHhcCccEEEEEecCCch
Q 047033          346 TLSML-VNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPAT-DESISKLMQQLYKLIDLHEVRDLTHLP  422 (514)
Q Consensus       346 tLSIl-VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gd-e~~ieQI~kQL~KLidVikV~dlt~~~  422 (514)
                      .|++. +.|+||.+.||...|++.|+||+-++...++ ..+...++++++.+ .+...++.+++.+-+..-       .-
T Consensus       266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~-------~v  338 (421)
T 3ab4_A          266 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWT-------NV  338 (421)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCS-------EE
T ss_pred             EEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCc-------eE
Confidence            45555 7899999999999999999999999763332 13566899999853 334556666654444321       12


Q ss_pred             hhheeeEEEEEecCcc-----cHHHHHHHHHhcCcEE--EEecCCEEEEEEecCHHHHHHHHHHh
Q 047033          423 FAERELMLIKVAVNTT-----ARRDVLDIATIFRAKA--VDVSDHTITLELTGDLDKMVALQRLL  480 (514)
Q Consensus       423 ~V~REL~LIKV~~~~~-----~R~eI~~la~iFrakI--VDvs~~si~iE~TG~~~KIdafi~lL  480 (514)
                      .+++.+++|-|-...-     --..+++.....+-+|  +.-+...+.+=+-  .+..+..++.|
T Consensus       339 ~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~--~~d~~~Av~~L  401 (421)
T 3ab4_A          339 LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR--EDDLDAAARAL  401 (421)
T ss_dssp             EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE--GGGHHHHHHHH
T ss_pred             EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe--HHHHHHHHHHH
Confidence            2356788888865421     1245666554444455  5555555554443  33344444433

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=90.07  E-value=0.7  Score=42.69  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=36.7

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcE--EEEEEecCh
Q 047033          106 FVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKAL--FTIVVYGTD  150 (514)
Q Consensus       106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~--~TIVv~gde  150 (514)
                      -+.|+||++.||.+.|++.|+||+-++...++ +.+.  +++++..++
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~   70 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV   70 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH
Confidence            47899999999999999999999999876555 2444  778887544

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=89.45  E-value=0.41  Score=45.53  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCc
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHL  421 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~  421 (514)
                      +-||. -+.|+||+++||-+.+++.|+||+-++.+.++ +.+...++++++.++ +...++.+++.+-+...+|.     
T Consensus        37 ~Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~-----  110 (200)
T 4go7_X           37 KVTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-----  110 (200)
T ss_dssp             EEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEE-----
T ss_pred             EEEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEE-----
Confidence            34443 58999999999999999999999999988776 345778888887432 33334444443322222222     


Q ss_pred             hhhheeeEEEEEecCc-ccH----HHHHHHHHhc--CcEEEEecCCEEEEEEecCHHHHHHHHHHh-ccCCc
Q 047033          422 PFAERELMLIKVAVNT-TAR----RDVLDIATIF--RAKAVDVSDHTITLELTGDLDKMVALQRLL-EPYGI  485 (514)
Q Consensus       422 ~~V~REL~LIKV~~~~-~~R----~eI~~la~iF--rakIVDvs~~si~iE~TG~~~KIdafi~lL-~pyGI  485 (514)
                        ++..++.|-|--.. ...    ..+++....-  +-+.+.-++-.+.+=+  +.+..+..++.| +.|++
T Consensus       111 --~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L  178 (200)
T 4go7_X          111 --YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL  178 (200)
T ss_dssp             --EECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred             --EecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence              34455555443221 111    2444443333  3344544444444433  344444444443 34653

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=89.33  E-value=2.2  Score=35.99  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee-ecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG-HAETEGLSRITTVVPATDESISKLMQQLYKLIDLH  413 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg-~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVi  413 (514)
                      +-..+.|.|+|+--+-.+|-.++++.|-.|.. -+| |..+.+++=|+++++|+.+.+..+..+|.+|-.|-
T Consensus         6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            34799999999999988999999999999886 555 55568899999999999999999999999998875

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=88.08  E-value=3.1  Score=36.20  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhcc---CceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARR---GYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRR---GyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      ..|++.+...+.++..+.|..+|.+.   +|.+   ++-++-...+..+|+.+. -+.+.++.|-+.|.+...|+-|
T Consensus        35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV  108 (109)
T 1rwu_A           35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV  108 (109)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            47999999999999999999999998   8987   557888889999999988 5778999999999999888755

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=87.92  E-value=0.75  Score=43.70  Aligned_cols=56  Identities=18%  Similarity=0.162  Sum_probs=39.7

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecChHHHHHHHHHHhcC
Q 047033          106 FVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGTDKVLQQVMEQLQKL  163 (514)
Q Consensus       106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gde~~ieQI~kQLeKL  163 (514)
                      -+.|+||++.||-+.|++.|+|||-++.+.++.. +.  ++.++..++  .++..+.|+++
T Consensus        42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d--~~~~~~~l~~~  100 (200)
T 4go7_X           42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--GPAAVEKLDSL  100 (200)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG--HHHHHHHHHTT
T ss_pred             cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh--HHHHHHHHHHH
Confidence            5899999999999999999999999998876532 22  566665433  34444444444

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=86.53  E-value=2.5  Score=43.63  Aligned_cols=133  Identities=15%  Similarity=0.215  Sum_probs=73.3

Q ss_pred             EEEEEE-EeCchhHHHHHHHHHhccCceeeeEEeeecC-CCc--EEEEEEecCh-HHHHHHHHHHhcCcceeeEeecCCh
Q 047033          101 HTISVF-VGDESGMINRIAGVFARRGYNIESLAVGLNK-DKA--LFTIVVYGTD-KVLQQVMEQLQKLVNVLKVEDLSNE  175 (514)
Q Consensus       101 h~Isvl-VeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~--~~TIVv~gde-~~ieQI~kQLeKLvdVikV~dlt~~  175 (514)
                      ..|++. +.|+||.+.||.+.|++.|+||+-++...++ ..+  .+++++..++ ....++.+++.+-+..-.|      
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------  338 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------  338 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE------
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE------
Confidence            346666 7899999999999999999999999763333 023  4888887533 3344555555443332122      


Q ss_pred             hhHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 047033          176 PQVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKI--VDISEYSLTIEVTGDPGKMVAVQRNLS-KFG  250 (514)
Q Consensus       176 ~~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akV--VDvs~~s~~iEvTG~~~kIdafi~~L~-~fG  250 (514)
                       .+++.++++-|-... ...+.+.        -.+++.....+-.|  +.-++.++.+=+-  .+..+..++.|. .|+
T Consensus       339 -~~~~~~a~vsvVG~gm~~~~Gv~--------a~~f~aL~~~~InI~~is~Se~~is~vV~--~~d~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          339 -LYDDQVGKVSLVGAGMKSHPGVT--------AEFMEALRDVNVNIELISTSEIRISVLIR--EDDLDAAARALHEQFQ  406 (421)
T ss_dssp             -EEECCEEEEEEECGGGTSCTTHH--------HHHHHHHHHTTCCCCEEEEETTEEEEEEE--GGGHHHHHHHHHHHTT
T ss_pred             -EEeCCeEEEEEEccCcccCccHH--------HHHHHHHHHCCCCEEEEEcCCCeEEEEEe--HHHHHHHHHHHHHHHh
Confidence             223456766664432 2233330        01133333333333  5556665555443  334444555444 444

>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A

Probab=86.00  E-value=2.8  Score=34.79  Aligned_cols=70  Identities=6%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             eeEEEEEEEeCcch-HHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPG-VLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pG-VL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      ..|++.+...+.++ ..+.|..+| +|++.++.  .-++-...+..+|+.+. -+.+.++.|-+.|.+...|.-|
T Consensus        14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v   85 (86)
T 2h9z_A           14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            57999999999999 999999999 77886542  35667778999999987 5778999999999998888765

>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13

Probab=84.10  E-value=2  Score=36.08  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             EEEEecCcc--cHHHHHHHHHhc-------CcEEEEec---CCEEEEEEec-CHHHHHHHHHHhccCCc-EEEee
Q 047033          430 LIKVAVNTT--ARRDVLDIATIF-------RAKAVDVS---DHTITLELTG-DLDKMVALQRLLEPYGI-CEVAR  490 (514)
Q Consensus       430 LIKV~~~~~--~R~eI~~la~iF-------rakIVDvs---~~si~iE~TG-~~~KIdafi~lL~pyGI-lEvaR  490 (514)
                      ++|+..+.+  ..+-|-++++.|       .|+|-.+.   -..+++|+.| +.++++++++.|+..|+ +|+..
T Consensus        22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg   96 (98)
T 3ced_A           22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR   96 (98)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            788876554  345688888877       45655643   3679999999 89999999999999996 67764

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=83.58  E-value=2.2  Score=35.54  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             EEEEecCcc--cHHHHHHHHHhcC-------cEEEEec---CCEEEEEEecCHHHHHHHHHHhccCCc-EEEe
Q 047033          430 LIKVAVNTT--ARRDVLDIATIFR-------AKAVDVS---DHTITLELTGDLDKMVALQRLLEPYGI-CEVA  489 (514)
Q Consensus       430 LIKV~~~~~--~R~eI~~la~iFr-------akIVDvs---~~si~iE~TG~~~KIdafi~lL~pyGI-lEva  489 (514)
                      ++|+..+.+  ..+-|-++++.|+       |+|-.+.   -.++++|+.|+.++++++++.|+..|+ .|+.
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (101)
T 2qrr_A           25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL   97 (101)
T ss_dssp             EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence            788876654  3466888888874       4555543   378999999999999999999999996 6766

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=83.12  E-value=7.2  Score=32.85  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=57.0

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEee-ecCCC--cEEEEEEecChHHHHHHHHHHhcCccee
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVG-LNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNVL  167 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg-~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdVi  167 (514)
                      +-.++.+.|+|+--+-.+|=.++++-|-.|-. -+| |..+.  ++++++++|+.+.+..+..+|.+|--|-
T Consensus         6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            56799999999999888999999999999874 344 33333  4699999999999999999999997764

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=82.71  E-value=3.9  Score=34.05  Aligned_cols=62  Identities=10%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             eEEEecCccccccccccccccchhhHHHHHHhcCC-------EEEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-E
Q 047033          184 LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA-------KIVDISE---YSLTIEVTGDPGKMVAVQRNLSKFGI-R  252 (514)
Q Consensus       184 LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~a-------kVVDvs~---~s~~iEvTG~~~kIdafi~~L~~fGI-l  252 (514)
                      ++|+....+.-.+          +-|.++++.|+.       +|-.+..   ..+++|+.|++++++++++.|+..|+ +
T Consensus        25 lv~l~f~g~~~~~----------pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v   94 (101)
T 2qrr_A           25 LVRMEFTGATVDA----------PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKV   94 (101)
T ss_dssp             EEEEEECTTSCSS----------CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred             EEEEEEcCCCcCc----------hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence            6777765432222          124889998854       4555433   78999999999999999999999997 6


Q ss_pred             EEe
Q 047033          253 EIA  255 (514)
Q Consensus       253 Eva  255 (514)
                      |..
T Consensus        95 Evl   97 (101)
T 2qrr_A           95 EVL   97 (101)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	2e-30
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	9e-28
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	3e-28
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	2e-27
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	8e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	2e-27
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	8e-26
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	1e-25
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	2e-25
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	9e-25
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	6e-23
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	3e-22
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	2e-15
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	5e-11
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	2e-14
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	3e-14
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	1e-13
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	2e-13
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	4e-06
d2f06a1	71	d.58.18.11 (A:71-141) Hypothetical protein BT0572	5e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	0.001

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  111 bits (279), Expect = 2e-30
 Identities = 34/77 (44%), Positives = 55/77 (71%)

Query: 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISK 401
           +R H +SMLV++ PGV+  V  +FARRG+NI S+ VG +ET GLSR+  +V   D++I +
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 402 LMQQLYKLIDLHEVRDL 418
           + +Q YKL+++ +V  +
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (260), Expect = 9e-28
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 2/77 (2%)

Query: 98  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQ 155
           +R H +S+ V ++ G++ ++A +FARRG+NI S+ VG ++   L    I+V G DK ++Q
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 156 VMEQLQKLVNVLKVEDL 172
           + +Q  KLV V+KV  +
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
           H +S+L+ +  G L+ V G+F+ RGYNI+SL+V   E   LSR+T V    DE + ++ +
Sbjct: 3   HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITK 62

Query: 405 QLYKLIDLHEVRDLT 419
           QL KLI++ ++ DL+
Sbjct: 63  QLNKLIEVVKLIDLS 77

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  102 bits (257), Expect = 2e-27
 Identities = 35/76 (46%), Positives = 56/76 (73%), Gaps = 2/76 (2%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVM 157
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V   +D  L   T+V  G D++++Q+ 
Sbjct: 2   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 61

Query: 158 EQLQKLVNVLKVEDLS 173
           +QL KL+ V+K+ DLS
Sbjct: 62  KQLNKLIEVVKLIDLS 77

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (260), Expect = 8e-28
 Identities = 27/74 (36%), Positives = 47/74 (63%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             LS+L+ +  G L+ V G+F++RGYNI+SL V   +   LSR+T      ++ + ++ +
Sbjct: 2   RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEK 61

Query: 405 QLYKLIDLHEVRDL 418
           QL+KL+D+  V +L
Sbjct: 62  QLHKLVDVLRVSEL 75

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVM 157
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G +KVL+Q+ 
Sbjct: 1   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 60

Query: 158 EQLQKLVNVLKVEDL 172
           +QL KLV+VL+V +L
Sbjct: 61  KQLHKLVDVLRVSEL 75

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 98.6 bits (246), Expect = 8e-26
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 174 NEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVT 233
           +E  VERELML+KV A  K R E+              L DIFR  I+D++    TIE+T
Sbjct: 1   SEGYVERELMLVKVRAVGKDREEMK------------RLADIFRGNIIDVTNELYTIELT 48

Query: 234 GDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
           G   K+    + +    I EIARTG   L R
Sbjct: 49  GTRSKLDGFLQAVDCNLILEIARTGVSGLSR 79

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 98.2 bits (245), Expect = 1e-25
 Identities = 29/79 (36%), Positives = 43/79 (54%)

Query: 422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481
            + ERELML+KV      R ++  +A IFR   +DV++   T+ELTG   K+    + ++
Sbjct: 3   GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVD 62

Query: 482 PYGICEVARTGRVALVRES 500
              I E+ARTG   L R  
Sbjct: 63  CNLILEIARTGVSGLSRGE 81

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 97.8 bits (244), Expect = 2e-25
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481
              ERE+ML+K+  +   R +V     IFR + +DV+    T++L G   K+ A    + 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 482 PYG-ICEVARTGRVALVRES 500
               I EVAR+G V L R  
Sbjct: 63  DVAKIVEVARSGVVGLSRGD 82

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 95.5 bits (238), Expect = 9e-25
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 13/90 (14%)

Query: 176 PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGD 235
             VERE+ML+K+ A    R E+                +IFR +I+D++    T+++ G 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVK------------RNTEIFRGQIIDVTPSLYTVQLAGT 50

Query: 236 PGKMVAVQRNLSKFG-IREIARTGKIALRR 264
            GK+ A   ++     I E+AR+G + L R
Sbjct: 51  SGKLDAFLASIRDVAKIVEVARSGVVGLSR 80

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.5 bits (225), Expect = 6e-23
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 425 ERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYG 484
           ERE+ LIKV  +   ++++  +  IFR K +DVS     +E+TG   K+ A   LL    
Sbjct: 8   EREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ 66

Query: 485 ICEVARTGRVALVRES 500
           + E+ARTG VA+ R +
Sbjct: 67  VEEIARTGIVAMNRWN 82

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.6 bits (220), Expect = 3e-22
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 13/91 (14%)

Query: 174 NEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVT 233
            E +VERE+ LIKV  D + + EIF             LV+IFR KI+D+S     IE+T
Sbjct: 3   PENRVEREMALIKVRFD-EDKQEIF------------QLVEIFRGKIIDVSREGAIIEIT 49

Query: 234 GDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
           G   K+ A    L +  + EIARTG +A+ R
Sbjct: 50  GARSKVEAFINLLPQKQVEEIARTGIVAMNR 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 8/70 (11%), Positives = 29/70 (41%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQ 159
              +     +  G++  +  +FA +G NI +  +  +       I +   + V ++ ++ 
Sbjct: 11  GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQA 70

Query: 160 LQKLVNVLKV 169
           ++ +   ++ 
Sbjct: 71  MKAIPGTIRA 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             L  +  + PGVL  +  +FA +G NI +  +    +  +  +   + A ++   K +Q
Sbjct: 12  RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQ 69

Query: 405 QLYKLIDLHEVRDL 418
            +  +      R L
Sbjct: 70  AMKAIPGTIRARLL 83

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             LS+ + +  G L  VT V A+   N+ +L +      G+ R   +V   D++   L  
Sbjct: 4   KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKD 61

Query: 405 QLY 407
             +
Sbjct: 62  NHF 64

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQ 159
              +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +V   DK  + + + 
Sbjct: 3   AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN 62

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ 404
             L +   D PG L  +  +    G NIQ+  +        + I   +    +    +  
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRT 61

Query: 405 QLYKLIDLHEVRDLT 419
            +   +D +++  + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQL 160
             + +   D  G + +I  +    G NI++  +  + +    TI++     V   V   +
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAI 63

Query: 161 QKLVNVLKVEDLS 173
              V+  K+E + 
Sbjct: 64  AAAVDAYKLEVVD 76

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD---KALFTIVVYGTDKVLQQVMEQ 159
           + +   ++ G++  +  + A  G NI      L K    +    I         ++++E+
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 160 LQKLVNVLKVE 170
           ++    ++++E
Sbjct: 64  VKTFDYIIEIE 74

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162
           + +   +  G + ++ G  +  G  IE +    N + A   I     DK ++ + E   K
Sbjct: 2   VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE---K 58

Query: 163 LVNVLKVEDL 172
            V++L   DL
Sbjct: 59  KVDLLAASDL 68

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 11/68 (16%), Positives = 26/68 (38%)

Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162
           I+    D  G+ N +  +  + G NI    + +   +    +++ G+   + +V   L  
Sbjct: 8   ITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPL 67

Query: 163 LVNVLKVE 170
           L     + 
Sbjct: 68  LGQQHDLI 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.97
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.97
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.97
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.96
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.96
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.95
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.92
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.91
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.91
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.9
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.89
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.89
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.56
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.54
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.09
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.08
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.05
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.97
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.56
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.5
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.2
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.17
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.05
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.03
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	97.96
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.74
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.52
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.42
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.98
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.73
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.52
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.03
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.15
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	93.9
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.72
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	93.53
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.17
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	93.06
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	92.58
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	90.8
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	90.72
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	88.11
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	87.91
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	87.86
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	87.73
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	87.48
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	87.41
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.54
d3dhxa1	99	Methionine import ATP-binding protein MetN {Escher	85.57
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	85.02
d3dhxa1	99	Methionine import ATP-binding protein MetN {Escher	84.75
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	83.41
d2joqa1	86	Hypothetical protein HP0495 {Helicobacter pylori [	82.69
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	82.13
d1gtda_	82	PurS subunit of FGAM synthetase {Archaeon Methanob	81.71

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.97  E-value=1.6e-32  Score=225.54  Aligned_cols=77  Identities=40%  Similarity=0.664  Sum_probs=75.9

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      |||||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||+.|+++.++|++|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=3.9e-32  Score=223.68  Aligned_cols=78  Identities=44%  Similarity=0.796  Sum_probs=76.5

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      |++|||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||++|+++.++|++|||+||+||++|.|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999985

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3e-31  Score=217.42  Aligned_cols=75  Identities=36%  Similarity=0.618  Sum_probs=74.2

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      ||||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||+.|+++.++|++|||+||+||++|.|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999997

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4e-29  Score=205.67  Aligned_cols=76  Identities=39%  Similarity=0.723  Sum_probs=73.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      |++|+|+++|+|+||||+||+|+|+||||||+||+||+||++++  |||+++|+++.++|+++||+||+||++|+|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            68999999999999999999999999999999999999999975  99999999999999999999999999999975

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.96  E-value=2.8e-29  Score=206.16  Aligned_cols=75  Identities=47%  Similarity=0.814  Sum_probs=72.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS  173 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt  173 (514)
                      |+|+|+++|+|+||||+||+|+|+||||||+||+||+||++++  |||++.|+++.++|++|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            6899999999999999999999999999999999999999975  99999999999999999999999999999986

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.2e-28  Score=199.39  Aligned_cols=73  Identities=49%  Similarity=0.824  Sum_probs=71.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033          100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus       100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      ||+|+++|+|+||||+||+|+|+||||||+||+||+||++++  |||++.|+++.++|++|||+||+||++|+|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999975  9999999999999999999999999999986

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.92  E-value=1.6e-25  Score=186.37  Aligned_cols=81  Identities=36%  Similarity=0.501  Sum_probs=79.1

Q ss_pred             chhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccC
Q 047033          421 LPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES  500 (514)
Q Consensus       421 ~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~  500 (514)
                      +++|+|||+||||++++.+|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 047033          501 G  501 (514)
Q Consensus       501 ~  501 (514)
                      +
T Consensus        82 ~   82 (86)
T d2pc6a1          82 R   82 (86)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.4e-25  Score=183.46  Aligned_cols=80  Identities=36%  Similarity=0.508  Sum_probs=76.8

Q ss_pred             CchhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeecc
Q 047033          420 HLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRE  499 (514)
Q Consensus       420 ~~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg  499 (514)
                      ++++|+|||||+||+++ ++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||++||.||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            46789999999999986 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 047033          500 S  500 (514)
Q Consensus       500 ~  500 (514)
                      +
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.3e-25  Score=183.87  Aligned_cols=81  Identities=33%  Similarity=0.469  Sum_probs=78.7

Q ss_pred             chhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCC-cEEEeecceeEeecc
Q 047033          421 LPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYG-ICEVARTGRVALVRE  499 (514)
Q Consensus       421 ~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyG-IlEvaRTG~vAl~Rg  499 (514)
                      .++|+||||||||++++.+|.+|.++|+.|+|+|+|++++++++|+||+++|||+|++.|+||| |+|++|||++||+||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            4789999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             CC
Q 047033          500 SG  501 (514)
Q Consensus       500 ~~  501 (514)
                      ++
T Consensus        82 ~~   83 (86)
T d2f1fa2          82 DK   83 (86)
T ss_dssp             TC
T ss_pred             cc
Confidence            86

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.90  E-value=8.7e-25  Score=181.90  Aligned_cols=82  Identities=44%  Similarity=0.515  Sum_probs=79.0

Q ss_pred             hhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEE
Q 047033          175 EPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREI  254 (514)
Q Consensus       175 ~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEv  254 (514)
                      ++.|+|||+|+||++++++|.++            .++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i------------~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei   69 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEM------------KRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEI   69 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHH------------HHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEE
T ss_pred             cchheeEEEEEEEeCChhhHHHH------------HHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEE
Confidence            57899999999999998899999            999999999999999999999999999999999999999999999


Q ss_pred             eeccceeeeccccc
Q 047033          255 ARTGKIALRREKLG  268 (514)
Q Consensus       255 aRTG~iAl~R~~~~  268 (514)
                      +|||.+||+||+..
T Consensus        70 ~RSG~vai~rg~~~   83 (86)
T d2pc6a1          70 ARTGVSGLSRGERV   83 (86)
T ss_dssp             EECCCEEEESTTCC
T ss_pred             EecCHhhhhcCccc
Confidence            99999999999764

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.2e-24  Score=178.60  Aligned_cols=82  Identities=33%  Similarity=0.535  Sum_probs=78.5

Q ss_pred             hhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEE
Q 047033          175 EPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG-IRE  253 (514)
Q Consensus       175 ~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fG-IlE  253 (514)
                      .++|+|||||+||++++++|.++            .++++.|+|+|+|++++++++|+||++++||+|++.|+||| |+|
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i------------~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~E   69 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEV------------KRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVE   69 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHH------------HHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEE
T ss_pred             cChheeEEEEEEEECChhhHHHH------------HHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEE
Confidence            36899999999999999999999            99999999999999999999999999999999999999998 999


Q ss_pred             Eeeccceeeeccccc
Q 047033          254 IARTGKIALRREKLG  268 (514)
Q Consensus       254 vaRTG~iAl~R~~~~  268 (514)
                      ++|||.+||+||+..
T Consensus        70 ivRSG~iai~rg~~~   84 (86)
T d2f1fa2          70 VARSGVVGLSRGDKI   84 (86)
T ss_dssp             EEECCCEEEESTTCC
T ss_pred             EEcCCHhhhhccccc
Confidence            999999999999763

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=3.6e-24  Score=177.30  Aligned_cols=80  Identities=45%  Similarity=0.576  Sum_probs=76.2

Q ss_pred             ChhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEE
Q 047033          174 NEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIRE  253 (514)
Q Consensus       174 ~~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlE  253 (514)
                      +++.|+|||||+||+++ ++|.+|            .++++.|+|+|||++++++++|+||+++||++|++.|+||||+|
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i------------~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~E   69 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEI------------FQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEE   69 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHH------------HHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEE
T ss_pred             chhhhhheeEEEEEecC-CCHHHH------------HHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEE
Confidence            46789999999999986 468888            99999999999999999999999999999999999999999999


Q ss_pred             Eeeccceeeeccc
Q 047033          254 IARTGKIALRREK  266 (514)
Q Consensus       254 vaRTG~iAl~R~~  266 (514)
                      ++|||.+||+||.
T Consensus        70 ivRSG~vai~rG~   82 (83)
T d2fgca1          70 IARTGIVAMNRWN   82 (83)
T ss_dssp             EEECCCEEEECCC
T ss_pred             EEecCceeEecCC
Confidence            9999999999996

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.56  E-value=2.2e-15  Score=120.56  Aligned_cols=62  Identities=24%  Similarity=0.417  Sum_probs=53.8

Q ss_pred             ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHH
Q 047033          342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQ  405 (514)
Q Consensus       342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQ  405 (514)
                      |+.|.|||+++|+||+|+||+++|++|||||+|+++++|++.+++||  +++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri--iv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE--EESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE--EECChHHHHHHHHHC
Confidence            67899999999999999999999999999999999999999999997  555455555555444

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.54  E-value=5.4e-15  Score=118.27  Aligned_cols=62  Identities=21%  Similarity=0.431  Sum_probs=55.5

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHH
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQ  159 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQ  159 (514)
                      |+.|+||++++|+||+|+||+++|++|||||+|+++++|++++++.++++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECChHHHHHHHHHC
Confidence            67899999999999999999999999999999999999999999999988766666655544

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2.9e-10  Score=92.27  Aligned_cols=74  Identities=12%  Similarity=0.284  Sum_probs=66.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      ..|.|.+.-+|+||||.+|+++|+++|+||.++.++...+.++..++++.|+...++++++|+++..|++|..+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            34889999999999999999999999999999999998877776677778889999999999999999998753

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=8.5e-11  Score=94.62  Aligned_cols=74  Identities=15%  Similarity=0.190  Sum_probs=67.6

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT  419 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt  419 (514)
                      -|.|.+..+|+||+|.+|+++|+++|+||.++.++..+..+...|.+.+++  ..-++++++|+++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~--~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCC--CccHHHHHHHHcCCCeEEEEEEe
Confidence            388999999999999999999999999999999999999999999999854  56689999999999999998653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=4.5e-10  Score=91.13  Aligned_cols=73  Identities=22%  Similarity=0.346  Sum_probs=65.1

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL  418 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl  418 (514)
                      .|.|.+.-+|+||+|++|+++|+++|+||.++.++...+.+  ...++++.|++..++++++|+++.+|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~--~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG--YVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE--EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc--EEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            58999999999999999999999999999999999876554  45666677889999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=3.8e-10  Score=90.77  Aligned_cols=72  Identities=15%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL  172 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dl  172 (514)
                      +-|.|.+..+|+||+|.+|+++|+++|+||.++.++.....+.  |.|.+  |...-++++++|+++.+|++|..+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~~~~~~vl~~I~~~~~V~~v~~i   75 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIAAAVDAYKLEVV   75 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHHHHHTEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CCCccHHHHHHHHcCCCeEEEEEE
Confidence            3588999999999999999999999999999999999887764  55555  455678999999999999999865

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.56  E-value=7.2e-08  Score=77.06  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=58.5

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD  417 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d  417 (514)
                      -|.+.++|+||+|+.|+++|+..|.||.+++..... ...-..|+|-+...+..++.++.+|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            588999999999999999999999999999987543 356668898887655469999999999999999973

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.50  E-value=1.7e-07  Score=74.92  Aligned_cols=70  Identities=14%  Similarity=0.250  Sum_probs=56.1

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC---cEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK---ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED  171 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~---~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d  171 (514)
                      -|.+.++|+||+|+.|+++|+..|.||.+++.....+.   ..++|-+...+..++.++++|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            58899999999999999999999999999997754432   24888887655469999999999999999974

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.20  E-value=2.4e-06  Score=68.74  Aligned_cols=67  Identities=16%  Similarity=0.268  Sum_probs=57.2

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCc
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLV  164 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLv  164 (514)
                      .+.++|+++-.|+||++++|+++++++|.||..+......+.-.+.+.+.+++..++++.+.|++|-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            3678999999999999999999999999999998877665544567778888888999999998873

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.17  E-value=1.7e-06  Score=68.13  Aligned_cols=55  Identities=18%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHH
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQV  156 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI  156 (514)
                      +|+|.++|+||.|++++.+|++.|+||+++.+..+.+.+.+.+.++..++..+-+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L   55 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVL   55 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHH
Confidence            5899999999999999999999999999999999988787888886444344333

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.05  E-value=3.3e-06  Score=67.16  Aligned_cols=70  Identities=19%  Similarity=0.307  Sum_probs=53.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC-hHHHHHHHHHHhcCcceee
Q 047033           99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT-DKVLQQVMEQLQKLVNVLK  168 (514)
Q Consensus        99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd-e~~ieQI~kQLeKLvdVik  168 (514)
                      ||++|++.-.|+||+++.|+++++++|.||..+......+.-.|.+.+..+ +..++++.++|+++-+-..
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~~l~   71 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN   71 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999999999876543322355555532 3347888888887755433

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.03  E-value=5.7e-06  Score=66.43  Aligned_cols=66  Identities=17%  Similarity=0.235  Sum_probs=56.4

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCc
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLI  410 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLi  410 (514)
                      ++++|++...|+||++++|+++++++|.||..+.....  .+...+.+.+.+++..++++.+.|++|-
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            35799999999999999999999999999988776554  4556788888888889999999998873

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.96  E-value=7.8e-06  Score=64.89  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcCcc
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-DESISKLMQQLYKLID  411 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KLid  411 (514)
                      ||++|++.-.|+||+++.|+++++.+|.||..+.....  .+.-.|.+.+..+ +..++++.++|+++-+
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~la~   68 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAFGQ   68 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEecCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999987654  3455566666532 3347888888877643

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.74  E-value=3.8e-05  Score=60.13  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHH
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQ  404 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~k  404 (514)
                      .|+|.++|+||-|.+++++|+..|+||+++.+-.+.+.++  +.+.++ |.+...++.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~--~vl~vd-d~~~a~~~L~   56 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVAN--VVIRPS-NMDKCIEVLK   56 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEE--EEEEES-CHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEE--EEEEEC-CHHHHHHHHH
Confidence            4889999999999999999999999999999988865444  556666 5444444443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.52  E-value=0.0001  Score=59.71  Aligned_cols=66  Identities=17%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC------CCCeeEEEEEEeC-ChHHHHHHHHHHhcCcc
Q 047033          346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE------TEGLSRITTVVPA-TDESISKLMQQLYKLID  411 (514)
Q Consensus       346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te------~~~iSRiTIVV~g-de~~ieQI~kQL~KLid  411 (514)
                      .+.|...|+||++.+|+++|+.||.||..|....-.      ..+.-.|.+++.. ..-.++++.++|+.|-+
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~   80 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCT   80 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHH
Confidence            444568999999999999999999999999864211      2334555555542 23457777777776644

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.42  E-value=8.5e-05  Score=60.15  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=48.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC----C--CcE--EEEEEec-ChHHHHHHHHHHhcCcceeeE
Q 047033          102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK----D--KAL--FTIVVYG-TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus       102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te----d--~~~--~TIVv~g-de~~ieQI~kQLeKLvdVikV  169 (514)
                      .+.|.-.|+||++.+|+++|+.||.||+.|....-.    +  .+.  |+++++. ....++++.+.|+.|-+-..|
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~v   84 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDV   84 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHcee
Confidence            445668999999999999999999999999864321    1  123  5666653 334578888888877655444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.98  E-value=0.0016  Score=51.67  Aligned_cols=67  Identities=24%  Similarity=0.252  Sum_probs=53.8

Q ss_pred             EEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC-hHHHHHHHHHHhcCccEEEE
Q 047033          349 MLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT-DESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       349 IlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd-e~~ieQI~kQL~KLidVikV  415 (514)
                      .-++|+||.|.++.++|+.+|+|+.+|.--|... +.-..+-+-++|. ++.++++.++|++.-.-++|
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            3457999999999999999999999999988754 4566777778773 45689999999887655444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.73  E-value=0.0035  Score=49.69  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             EEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec-ChHHHHHHHHHHhcCcceeeE
Q 047033          105 VFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG-TDKVLQQVMEQLQKLVNVLKV  169 (514)
Q Consensus       105 vlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g-de~~ieQI~kQLeKLvdVikV  169 (514)
                      .-+.|+||.|.++.++|+.+|+|+.+|.--|.... . + +=|-++| .++.++++.++|++.-.-+++
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            34579999999999999999999999998887643 2 3 5555665 345689999999887665554

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.0045  Score=50.85  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             cccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033          339 TSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT-DESISKLMQQLYKLI  410 (514)
Q Consensus       339 ~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd-e~~ieQI~kQL~KLi  410 (514)
                      +.+-.+-+|.+.+.|+||.|..+...|+++|+|+..|.--|+-.. .-..+-|-++|. +..++++++.|.+-+
T Consensus        11 ~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          11 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            344457788899999999999999999999999999999887643 344555556664 456888888887654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.0074  Score=49.54  Aligned_cols=67  Identities=12%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecC-hHHHHHHHHHHhcCc
Q 047033           98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGT-DKVLQQVMEQLQKLV  164 (514)
Q Consensus        98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gd-e~~ieQI~kQLeKLv  164 (514)
                      ..+-.|.+.+.|+||.|.++.+.|+++|+|+..|.--|.... .-  |-|-++|. +..++++++.|++-+
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            356788888999999999999999999999999998887544 22  44445553 556888888887654

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.15  E-value=0.014  Score=44.58  Aligned_cols=51  Identities=20%  Similarity=0.371  Sum_probs=42.5

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      .++||++.|+.+.++..|+||+-++.|.+|    .+|+++|+  ++..++.++-|++
T Consensus        12 ~~~~gi~arif~~L~~~~InV~mIsq~~Se----~~Is~~V~--~~d~~~Av~~Lh~   62 (67)
T d2hmfa2          12 RGAKGIAGKIFTAVSESGANIKMIAQGSSE----VNISFVID--EKDLLNCVRKLHE   62 (67)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCCCEEEESSCS----SEEEEEEE--GGGHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHcCCChHHeeecCcc----ceEEEEEe--HHHHHHHHHHHHH
Confidence            589999999999999999999999998776    36999998  4456666666654

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.90  E-value=0.046  Score=41.62  Aligned_cols=51  Identities=22%  Similarity=0.372  Sum_probs=39.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ  161 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe  161 (514)
                      ..++||+..|+.+.++..|+||+-++.+.+|  -.++++|+.++  .++.++-|+
T Consensus        11 m~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~~d--~~~Av~~Lh   61 (67)
T d2hmfa2          11 MRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDEKD--LLNCVRKLH   61 (67)
T ss_dssp             TTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEGGG--HHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeHHH--HHHHHHHHH
Confidence            3689999999999999999999999988664  34888887544  445555554

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.72  E-value=0.033  Score=43.42  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033          351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY  407 (514)
Q Consensus       351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~  407 (514)
                      ..++||+++|+.+.++..|+||+-++-|.+|    ..|+++|+  ++..++.++-|+
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se----~~Is~vV~--~~d~~~Av~~Lh   60 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK----VNISFIVN--EAEAEGCVQALH   60 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC----SEEEEEEE--HHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc----eEEEEEEe--HHHHHHHHHHHH
Confidence            3678999999999999999999999988776    35999998  455666666664

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.53  E-value=0.034  Score=45.28  Aligned_cols=58  Identities=17%  Similarity=0.302  Sum_probs=44.1

Q ss_pred             EEEEE---EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033          346 TLSML---VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL  409 (514)
Q Consensus       346 tLSIl---VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL  409 (514)
                      .+++.   ..++||+++||...+++.|+||+-++.+.+|.    .|+++|+.+  ..++.++-|++.
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~----~Isf~V~~~--d~~~a~~~L~~~   77 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET----NISLVVSEE--DVDKALKALKRE   77 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC----CEEEEECST--THHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc----eEEEEEeHH--HHHHHHHHHHHH
Confidence            45553   36999999999999999999999999887764    589999854  445555555444

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.17  E-value=0.081  Score=42.40  Aligned_cols=55  Identities=16%  Similarity=0.322  Sum_probs=41.7

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--------HHHHHHHHHHhcCccE
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--------ESISKLMQQLYKLIDL  412 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--------~~ieQI~kQL~KLidV  412 (514)
                      .++||+++||.+.+++.|+||+-++.++      ..|+++++.++        ..++++.+.|+++-.|
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se------~~is~~v~~~~~~~a~~~~~~~~~~~~el~~ia~V   86 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEKIAVV   86 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEET------TEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEE
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecC------CeEEEEEchhHHHHHHHHHHHHHHHHHHHhCCceE
Confidence            4899999999999999999999998543      26899997542        3356667776654433

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.41  Score=37.59  Aligned_cols=73  Identities=15%  Similarity=0.172  Sum_probs=65.1

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      ..|.+.+...|.++..+.|..++.+..-+-++++.-++-...+-.+|+.+. -+++.+..|-++|.+.-.|.-|
T Consensus        13 c~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l~~~~~Vkmv   86 (87)
T d1rwua_          13 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV   86 (87)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCcEEEEEEECChhHHHHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            469999999999999999999999877677888888999999999999987 5788999999999999888754

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=92.58  E-value=0.091  Score=42.64  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=40.5

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcC
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL  163 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKL  163 (514)
                      ..++||++.|+.+.|++.|+||+-++.+.++.  -++++|..++  .++.++.|++.
T Consensus        25 m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d--~~~a~~~L~~~   77 (100)
T d2hmfa3          25 MVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED--VDKALKALKRE   77 (100)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTT--HHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHH--HHHHHHHHHHH
Confidence            47999999999999999999999999876653  3778887554  44555555443

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.80  E-value=0.26  Score=39.27  Aligned_cols=52  Identities=17%  Similarity=0.431  Sum_probs=37.4

Q ss_pred             eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--------HHHHHHHHHHhcC
Q 047033          108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--------KVLQQVMEQLQKL  163 (514)
Q Consensus       108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--------~~ieQI~kQLeKL  163 (514)
                      .++||+++|+.+.|++.|+||+-++.+    +..++++++.++        ..++++.+.|+++
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~S----e~~is~~v~~~~~~~a~~~~~~~~~~~~el~~i   83 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKLWSRELIQQELDHVVEELEKI   83 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTT
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEec----CCeEEEEEchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            489999999999999999999999853    224777776432        2345555555543

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.72  E-value=0.31  Score=38.95  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             EEEEecCc--ccHHHHHHHHHhc-------CcEEEEecC---CEEEEEEec-CHHHHHHHHHHhccCCc-EEEeecc
Q 047033          430 LIKVAVNT--TARRDVLDIATIF-------RAKAVDVSD---HTITLELTG-DLDKMVALQRLLEPYGI-CEVARTG  492 (514)
Q Consensus       430 LIKV~~~~--~~R~eI~~la~iF-------rakIVDvs~---~si~iE~TG-~~~KIdafi~lL~pyGI-lEvaRTG  492 (514)
                      ++|+....  ...+-|-++++.|       .|+|=++..   ..+++|++| +++++++.++.|+..|+ +|+.+-|
T Consensus        19 lvrL~F~G~~a~~Pvis~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          19 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEEEEEeCCccCchHHHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            66776554  3467788898877       456666666   679999999 78889999999999996 7988766

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.11  E-value=0.72  Score=36.34  Aligned_cols=47  Identities=23%  Similarity=0.409  Sum_probs=38.9

Q ss_pred             HHHHHHhcC-------CEEEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 047033          209 IRWLVDIFR-------AKIVDISE---YSLTIEVTGDPGKMVAVQRNLSKFGI-REIA  255 (514)
Q Consensus       209 i~~l~~~F~-------akVVDvs~---~s~~iEvTG~~~kIdafi~~L~~fGI-lEva  255 (514)
                      |.++++.|+       |+|=++..   ..+++|++|+++++++.++.|+..|+ +|+.
T Consensus        30 is~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEvi   87 (90)
T d2qswa1          30 ISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   87 (90)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             HHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEe
Confidence            378888886       45556666   68999999999999999999999997 5653

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=87.91  E-value=1.1  Score=35.30  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=61.0

Q ss_pred             eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee-ecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEE
Q 047033          344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG-HAETEGLSRITTVVPATDESISKLMQQLYKLIDLH  413 (514)
Q Consensus       344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg-~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVi  413 (514)
                      -+.+++.|+|+--.-.+|-.++++.|-.|-. -+| |....+++=|.++++|+.+.+..+...|.+|-.|-
T Consensus         4 i~vigIive~r~~~a~kVn~iL~~yg~~I~g-RmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~   73 (80)
T d2nzca1           4 FYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   73 (80)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             EEEEEEEEeChHHhHHHHHHHHHHCCCEEEE-eccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCEE
Confidence            3689999999999999999999999988885 555 55677899999999999999999999999998874

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.86  E-value=0.67  Score=36.53  Aligned_cols=60  Identities=12%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             EEEEecC--cccHHHHHHHHHhcC-------cEEEEecC---CEEEEEEecCHHHHHHHHHHhccCCc-EEEe
Q 047033          430 LIKVAVN--TTARRDVLDIATIFR-------AKAVDVSD---HTITLELTGDLDKMVALQRLLEPYGI-CEVA  489 (514)
Q Consensus       430 LIKV~~~--~~~R~eI~~la~iFr-------akIVDvs~---~si~iE~TG~~~KIdafi~lL~pyGI-lEva  489 (514)
                      ++|+..+  ....+-|-++++.|+       |+|=++.+   +.+++|++|+++++++.++.|+..|+ +|+.
T Consensus        15 lvrl~f~g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEvi   87 (90)
T d2qswa1          15 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   87 (90)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEe
Confidence            5666543  345567888888774       55666666   78999999999999999999999997 6654

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=87.73  E-value=0.98  Score=35.91  Aligned_cols=62  Identities=10%  Similarity=0.059  Sum_probs=45.6

Q ss_pred             eeEEEecCccccccccccccccchhhHHHHHHhcCCE-------EEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-
Q 047033          183 MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAK-------IVDISE---YSLTIEVTGDPGKMVAVQRNLSKFGI-  251 (514)
Q Consensus       183 ~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~ak-------VVDvs~---~s~~iEvTG~~~kIdafi~~L~~fGI-  251 (514)
                      .++|+....+.-.+          +-|.++++.|+..       |=++..   .+++++++|+++++++.++.|+..|+ 
T Consensus        20 ~llrl~f~g~~a~~----------Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i~   89 (97)
T d2qrra1          20 PLVRMEFTGATVDA----------PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVK   89 (97)
T ss_dssp             EEEEEEECTTSCSS----------CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEEeCCCcCc----------hHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCe
Confidence            48888775433222          1238899988754       444454   56899999999999999999999997 


Q ss_pred             EEE
Q 047033          252 REI  254 (514)
Q Consensus       252 lEv  254 (514)
                      +|+
T Consensus        90 vEv   92 (97)
T d2qrra1          90 VEV   92 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            454

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=87.48  E-value=0.67  Score=36.93  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             EEEEEecCcc--cHHHHHHHHHhcCc-------EEEEecC---CEEEEEEecCHHHHHHHHHHhccCCc-EEE
Q 047033          429 MLIKVAVNTT--ARRDVLDIATIFRA-------KAVDVSD---HTITLELTGDLDKMVALQRLLEPYGI-CEV  488 (514)
Q Consensus       429 ~LIKV~~~~~--~R~eI~~la~iFra-------kIVDvs~---~si~iE~TG~~~KIdafi~lL~pyGI-lEv  488 (514)
                      .++|+....+  ..+-|-++++.|+.       +|=++.+   .+++++++|+++++++.++.|+..|+ +|+
T Consensus        20 ~llrl~f~g~~a~~Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i~vEv   92 (97)
T d2qrra1          20 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEV   92 (97)
T ss_dssp             EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEeCCCcCchHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence            5888876654  45678899988854       4445554   66899999999999999999999996 454

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=0.11  Score=41.45  Aligned_cols=55  Identities=20%  Similarity=0.330  Sum_probs=41.1

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHH-------HHHHHHHHhcCccE
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES-------ISKLMQQLYKLIDL  412 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~-------ieQI~kQL~KLidV  412 (514)
                      .++||+++||.+.|++.|+||+-++.++      .+|+++++..+..       .+.+.+.|+|+-+|
T Consensus        25 ~~~~G~~~~if~~L~~~~Inv~mis~Se------~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V   86 (91)
T d2j0wa2          25 LHSRGFLAEVFGILARHNISVDLITTSE------VSVALTLDTTGSTSTGDTLLTQSLLMELSALCRV   86 (91)
T ss_dssp             SCHHHHHHHHTTTTTTTTCCCSEEEEET------TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCE
T ss_pred             CCCcCHHHHHHHHHHHcCCcEEEEEccC------cEEEEEEchhHHHHHHHHHHHHHHHHHHhccCcE
Confidence            5689999999999999999999998432      4789999854321       25566667665444

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.54  E-value=0.24  Score=38.34  Aligned_cols=50  Identities=20%  Similarity=0.350  Sum_probs=38.4

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHH
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQL  160 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQL  160 (514)
                      ..++||++.|+.+.+++.|+||+=++-|.++  --++++|+.++  .+..++.|
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se--~~Is~vV~~~d--~~~Av~~L   59 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK--VNISFIVNEAE--AEGCVQAL   59 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC--SEEEEEEEHHH--HHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc--eEEEEEEeHHH--HHHHHHHH
Confidence            4689999999999999999999999988754  34888886433  44444444

>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.76  Score=36.69  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=47.4

Q ss_pred             EEEEEecCcc--cHHHHHHHHHhcC-------cEEEEecC---CEEEEEEecCHHHHHHHHHHhccCCc-EEE
Q 047033          429 MLIKVAVNTT--ARRDVLDIATIFR-------AKAVDVSD---HTITLELTGDLDKMVALQRLLEPYGI-CEV  488 (514)
Q Consensus       429 ~LIKV~~~~~--~R~eI~~la~iFr-------akIVDvs~---~si~iE~TG~~~KIdafi~lL~pyGI-lEv  488 (514)
                      .++|+....+  ..+-|-++++.|+       |.|=.+..   +.+++|++|+++++++.++.|+..|+ .|+
T Consensus        21 ~llrl~f~g~~a~~Piis~l~~~~~v~vnIL~g~i~~i~~~~~G~Lil~l~g~~~~i~~al~~L~~~~v~vEv   93 (99)
T d3dhxa1          21 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV   93 (99)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEeCCCcCccHHHHHHHHhCCceEEEEEeeEEeCCeeEEEEEEEeeCCHHHHHHHHHHHHHcCCeEEE
Confidence            4788876543  4567889999885       44555666   68999999999999999999999996 454

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.46  Score=35.42  Aligned_cols=49  Identities=27%  Similarity=0.445  Sum_probs=38.1

Q ss_pred             eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033          352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK  408 (514)
Q Consensus       352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K  408 (514)
                      .++||+.+|+...++.  +||.=+..+.+|.    +|+++|+  ++..++.++.|++
T Consensus        12 ~~~~gi~arif~~L~~--~nI~~i~~~~Se~----~is~vV~--~~d~~~Av~aLh~   60 (64)
T d2j0wa3          12 SKACGVGKEVFGVLEP--FNIRMICYGASSH----NLCFLVP--GEDAEQVVQKLHS   60 (64)
T ss_dssp             TTSSSHHHHHHSSCTT--SCCCEEEESSCTT----EEEEEEE--GGGHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHhh--CCCeEEEEEcCcc----EEEEEEc--HHHHHHHHHHHHH
Confidence            4799999999999974  7777777776654    6999998  4566777777664

>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=84.75  E-value=1.3  Score=35.21  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=38.0

Q ss_pred             HHHHHHhcCC-------EEEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 047033          209 IRWLVDIFRA-------KIVDISE---YSLTIEVTGDPGKMVAVQRNLSKFGI-REI  254 (514)
Q Consensus       209 i~~l~~~F~a-------kVVDvs~---~s~~iEvTG~~~kIdafi~~L~~fGI-lEv  254 (514)
                      |.+|++.|+.       .|=++..   ..++++++|+++++++.++.|+..|+ +|+
T Consensus        37 is~l~~~~~v~vnIL~g~i~~i~~~~~G~Lil~l~g~~~~i~~al~~L~~~~v~vEv   93 (99)
T d3dhxa1          37 LSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV   93 (99)
T ss_dssp             HHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHhCCceEEEEEeeEEeCCeeEEEEEEEeeCCHHHHHHHHHHHHHcCCeEEE
Confidence            3889998875       4455666   68999999999999999999999997 454

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.41  E-value=0.39  Score=38.32  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             HHHHHHhcC-------CEEEEecC---CEEEEEEeC-ChhHHHHHHHHhccCCc-EEEeecc
Q 047033          209 IRWLVDIFR-------AKIVDISE---YSLTIEVTG-DPGKMVAVQRNLSKFGI-REIARTG  258 (514)
Q Consensus       209 i~~l~~~F~-------akVVDvs~---~s~~iEvTG-~~~kIdafi~~L~~fGI-lEvaRTG  258 (514)
                      |.++++.|+       |+|=++..   ..++++++| +++++++.++.|+..|+ +|+.+-|
T Consensus        34 is~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          34 VSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             HHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            478888775       56666776   668999999 78899999999999997 6888766

>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: HP0495-like
domain: Hypothetical protein HP0495
species: Helicobacter pylori [TaxId: 210]

Probab=82.69  E-value=5.3  Score=30.70  Aligned_cols=71  Identities=4%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033          343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV  415 (514)
Q Consensus       343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV  415 (514)
                      ..|.+.+...+.++.+.++...|..|.+.+..  .-++-...+-.+|+.+. -+++.++.|-+.|.+.-.|+-|
T Consensus        14 c~y~~KvIg~~~~~~~~~~~~~~~~~~~~~~~--~k~Ss~GkY~Svtv~v~v~s~~ql~~iY~~L~~~~~Vimv   85 (86)
T d2joqa1          14 CLWDYRVIMTTKDTSTLKELLETYQRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             EEEEEEEEESCSCCCHHHHHHHTTTCCEEEEE--EEECTTSCCEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred             cccEEEEEEecCcccceeeEEEEeccCCCCCc--cccCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            57999999999999999999999999988764  25677788888998887 5788999999999999999876

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=82.13  E-value=0.31  Score=38.78  Aligned_cols=56  Identities=16%  Similarity=0.345  Sum_probs=38.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH--H-----HHHHHHHHhcCcce
Q 047033          107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK--V-----LQQVMEQLQKLVNV  166 (514)
Q Consensus       107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~--~-----ieQI~kQLeKLvdV  166 (514)
                      ..++||+++||.+.|++.|+||+-++.+    ...++++++..+.  .     .+.+.+.|+|+-+|
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~S----e~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V   86 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITTS----EVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRV   86 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEEE----TTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCE
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEEcc----CcEEEEEEchhHHHHHHHHHHHHHHHHHHhccCcE
Confidence            4578999999999999999999999742    2357788764332  1     24455566664433

>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: PurS-like
superfamily: PurS-like
family: PurS subunit of FGAM synthetase
domain: PurS subunit of FGAM synthetase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.71  E-value=1.3  Score=34.77  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             eEEEEEEEeCcchHHH----HHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh
Q 047033          344 SHTLSMLVNDSPGVLN----IVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD  396 (514)
Q Consensus       344 khtLSIlVeN~pGVL~----RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde  396 (514)
                      +|.+.|.|..+||||.    -|.+-..+.||+++++.+|-       ++.+.+++++
T Consensus         1 kf~v~V~V~lK~gVlDPqG~ai~~aL~~lG~~v~~Vr~gK-------~~~l~i~~~~   50 (82)
T d1gtda_           1 KFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-------VITFTMDEDS   50 (82)
T ss_dssp             CEEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-------EEEEEECCSC
T ss_pred             CeEEEEEEEECCCCcCcHHHHHHHHHHHcCCCcceEEEEE-------EEEEEEcCCC
Confidence            5788999999999996    46677788999999999986       4778887543