Citrus Sinensis ID: 047035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780---
Protein Sequence
SFFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccEEccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccEEEEcccHHHHHcccccEEccccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHccccHHHHcccccccccccccccccccccEEcEEcccccccccccccccccccccEEEEccccccccccccccccccEEEcccccccccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
cHHHHcccccccccHccccccccccccccEEEEEEccccccEcEEEcccccccccccccccccccccHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHcccccEEEEccccccccccccHHHcccccccEEEEEEEEEccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHccccccEEEEEccccccccccHHHHHcHccccEEEcccccccccccHHHccccccEEEEEcccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEEccccccccccHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccHEEcccccccccccccccccccccEEEcccccccccccccccHHccccEEEcccccccccccccHcccccccEEEcccccccccccHHHHccccccEEccc
Coil and Loop (DISEMBL)
sfflsisdREYADEILTSWvddgisdccdwervtcdataGQVIQLSLDFARmfdfynssdgfpilnfslflpfqelqildlsgnyfdgwnenkdydssgsskkLKILNLNynnfndsvlpYLNTLTSLTTLNLYYnrigglnpsqglanlrnlkalnlswngissgatrlglgnltnlevldlsanrisgsltelapfrnlkvlgmrnnllngsveskgicelknlteldlgennlegqlpwclsdliglkvldisfnhlsgnlpsVIANLTSLEYLalsdnnfqgefplslltnhsNLEVLLLKVSSnlrlktenwipTFQLKVlqlpncnlkvipsfllhqydfkfldlssnklvgnfptwlmqnnTKLEVLRLSnnsfsgilqlpkvKHDLLRHLDisnnnltgmlpqnmGIVIQKLMYIDIsknnfegnipysiGEMKELFLLDLsrnkfsgdlsatSVIRCASLeyldvsennfyghifptymNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNnllsghipcwigNFSYLDVLLMSKnhlegnipvqINNFrqlqlldlsenrlfgsiASSLNLSSIMHLYLQNnalsgqipstlfrstelltldlrdnkffgripdqinnHSELRVLLLRGNYLQGQIPIALCQLqklgildlshnklngsipscFVNMLfwregngdlygsgLYIYFQLGglhsigtyynstldlwlfgddyitlpqrARVQFVTKNryefyngsnlnymsgIDLSYneltgeipseigelpkvralnls
Flexible Loop (DISEMBL)
sfflsisdREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISnnnltgmlpqNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEfyngsnlnyMSGIDLSYNELTGEipseigelpkvralnls
Low Complexity Region (SEG)
SFFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDssgsskklkilnlnynnfndsVlpylntltslttlnlyynRIGGLNPSQGlanlrnlkalnlSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS
Disordered region (IsUnstruct)
***LSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENK*********KLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEI****************
Disordered Region (DISOPRED)
SFFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWRE**********YIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS
Disordered Region (DISEMBL)
SFFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS
Disordered Region (DISPRO)
**********YADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SFFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	783	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.925	0.580	0.315	5e-66
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.747	0.514	0.323	4e-60
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.902	0.564	0.291	2e-59
Q9FL28	1173	LRR receptor-like serine/	no	no	0.772	0.515	0.308	1e-56
Q9LP24	1120	Probable leucine-rich rep	no	no	0.825	0.576	0.321	2e-55
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.863	0.567	0.311	5e-54
O49318	1124	Probable leucine-rich rep	no	no	0.729	0.508	0.313	8e-53
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.717	0.465	0.314	8e-53
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.758	0.568	0.326	1e-52
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.717	0.465	0.312	5e-52

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  253 bits (646), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 261/827 (31%), Positives = 390/827 (47%), Gaps = 102/827 (12%)

Query: 13  DEILTSWVDDGISDCCDWERVTCDATA-GQVIQLSLD----FARMFDFYNSSDGFPILNF 67
           D+ L  W  D I + C W  VTCD T   +VI L+L        +  ++   D    L+ 
Sbjct: 44  DDPLRQWNSDNI-NYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDL 102

Query: 68  S---LFLP-------FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS 117
           S   L  P          L+ L L  N   G    +     GS   ++ L +  N     
Sbjct: 103 SSNNLVGPIPTALSNLTSLESLFLFSNQLTG----EIPSQLGSLVNIRSLRIGDNELVGD 158

Query: 118 VLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTN 177
           +   L  L +L  L L   R+ G  PSQ L  L  +++L L  N +  G     LGN ++
Sbjct: 159 IPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLE-GPIPAELGNCSD 216

Query: 178 LEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNL 236
           L V   + N ++G++  EL    NL++L + NN L G + S+ + E+  L  L L  N L
Sbjct: 217 LTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ-LGEMSQLQYLSLMANQL 275

Query: 237 EGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNH 296
           +G +P  L+DL  L+ LD+S N+L+G +P    N++ L  L L++N+  G  P S+ +N+
Sbjct: 276 QGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNN 335

Query: 297 SNLEVLLLKVSSNLRLKTENWIPTF-----QLKVLQLPNCNLK-VIPSFLLHQYDFKFLD 350
           +NLE L+L   S  +L  E  IP        LK L L N +L   IP  L    +   L 
Sbjct: 336 TNLEQLVL---SGTQLSGE--IPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLY 390

Query: 351 LSSNKLVGNF-PTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDI---SNNNLT 406
           L +N L G   P+  + N T L+ L L +N+  G  +LPK +   LR L++     N  +
Sbjct: 391 LHNNTLEGTLSPS--ISNLTNLQWLVLYHNNLEG--KLPK-EISALRKLEVLFLYENRFS 445

Query: 407 GMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466
           G +PQ +G     L  ID+  N+FEG IP SIG +KEL LL L +N+  G L A S+  C
Sbjct: 446 GEIPQEIGNCT-SLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPA-SLGNC 503

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
             L  LD+++N   G I  ++  L  L  L L NN   G +   L++   L  +++S+N 
Sbjct: 504 HQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query: 527 LSG-----------------------HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 563
           L+G                        IP  +GN   LD L + KN L G IP  +   R
Sbjct: 564 LNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIR 623

Query: 564 QLQLLDLSENRLFGSIASSLNL-SSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622
           +L LLD+S N L G+I   L L   + H+ L NN LSG IP  L + ++L  L L  N+F
Sbjct: 624 ELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQF 683

Query: 623 FGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
              +P ++ N ++L VL L GN L G IP  +  L  L +L+L  N+ +GS+P       
Sbjct: 684 VESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAM---- 739

Query: 683 FWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRY 742
                             +L  L+ +    NS     L G+  + + Q   +Q      Y
Sbjct: 740 -----------------GKLSKLYELRLSRNS-----LTGEIPVEIGQLQDLQSALDLSY 777

Query: 743 EFYNG------SNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             + G        L+ +  +DLS+N+LTGE+P  +G++  +  LN+S
Sbjct: 778 NNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVS 824

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  233 bits (594), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 216/667 (32%), Positives = 320/667 (47%), Gaps = 82/667 (12%)

Query: 16  LTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQE 75
           LTSW     +  CDW  V C  T  +V ++                              
Sbjct: 46  LTSWDPSTPAAPCDWRGVGC--TNHRVTEI-----------------------------R 74

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
           L  L LSG         +  D     + L+ L+L  N+FN ++   L   T L ++ L Y
Sbjct: 75  LPRLQLSG---------RISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQY 125

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TE 194
           N + G  P   + NL +L+  N++ N +S G   +GL   ++L+ LD+S+N  SG + + 
Sbjct: 126 NSLSGKLPP-AMRNLTSLEVFNVAGNRLS-GEIPVGLP--SSLQFLDISSNTFSGQIPSG 181

Query: 195 LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLD 254
           LA    L++L +  N L G + +  +  L++L  L L  N L+G LP  +S+   L  L 
Sbjct: 182 LANLTQLQLLNLSYNQLTGEIPAS-LGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLS 240

Query: 255 ISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL---KVSSNLR 311
            S N + G +P+    L  LE L+LS+NNF G  P SL  N S L ++ L     S  +R
Sbjct: 241 ASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTS-LTIVQLGFNAFSDIVR 299

Query: 312 LKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKL 371
            +T               NC           +   + LDL  N++ G FP WL  N   L
Sbjct: 300 PETTA-------------NC-----------RTGLQVLDLQENRISGRFPLWLT-NILSL 334

Query: 372 EVLRLSNNSFSGILQLPKVKHDLLR--HLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN 429
           + L +S N FSG  ++P    +L R   L ++NN+LTG +P  +      L  +D   N+
Sbjct: 335 KNLDVSGNLFSG--EIPPDIGNLKRLEELKLANNSLTGEIPVEIK-QCGSLDVLDFEGNS 391

Query: 430 FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMN 489
            +G IP  +G MK L +L L RN FSG +  +S++    LE L++ ENN  G      M 
Sbjct: 392 LKGQIPEFLGYMKALKVLSLGRNSFSGYV-PSSMVNLQQLERLNLGENNLNGSFPVELMA 450

Query: 490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 549
           LT L  L L  N F+G +   + N   L  L++S N  SG IP  +GN   L  L +SK 
Sbjct: 451 LTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQ 510

Query: 550 HLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN-LSSIMHLYLQNNALSGQIPSTLFR 608
           ++ G +PV+++    +Q++ L  N   G +    + L S+ ++ L +N+ SG+IP T   
Sbjct: 511 NMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGF 570

Query: 609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
              L++L L DN   G IP +I N S L VL LR N L G IP  L +L +L +LDL  N
Sbjct: 571 LRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQN 630

Query: 669 KLNGSIP 675
            L+G IP
Sbjct: 631 NLSGEIP 637

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 246/843 (29%), Positives = 367/843 (43%), Gaps = 136/843 (16%)

Query: 13  DEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLP 72
           +++L  W + G    C+W  VTC     ++I L+L    +    + S G           
Sbjct: 47  EDVLRDW-NSGSPSYCNWTGVTCGGR--EIIGLNLSGLGLTGSISPSIGR---------- 93

Query: 73  FQELQILDLSGNYFDGWNENK--------------------DYDSS-GSSKKLKILNLNY 111
           F  L  +DLS N   G                         D  S  GS   LK L L  
Sbjct: 94  FNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGD 153

Query: 112 NNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLG 171
           N  N ++      L +L  L L   R+ GL PS+    L  L+ L L  N +  G     
Sbjct: 154 NELNGTIPETFGNLVNLQMLALASCRLTGLIPSR-FGRLVQLQTLILQDNELE-GPIPAE 211

Query: 172 LGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
           +GN T+L +   + NR++GSL  EL   +NL+ L + +N  +G + S+ + +L ++  L+
Sbjct: 212 IGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQ-LGDLVSIQYLN 270

Query: 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPL 290
           L  N L+G +P  L++L  L+ LD+S N+L+G +      +  LE+L L+ N   G  P 
Sbjct: 271 LIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK 330

Query: 291 SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLD 350
           ++ +N+++L+ L L   S  +L  E  IP       ++ NC               K LD
Sbjct: 331 TICSNNTSLKQLFL---SETQLSGE--IPA------EISNCQ------------SLKLLD 367

Query: 351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLP 410
           LS+N L G  P  L Q   +L  L L+NNS  G L         L+   + +NNL G +P
Sbjct: 368 LSNNTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP 426

Query: 411 QNMGIV-----------------------IQKLMYIDISKNNFEGNIPYSIGEMKELFLL 447
           + +G +                         +L  ID   N   G IP SIG +K+L  L
Sbjct: 427 KEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRL 486

Query: 448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI 507
            L  N+  G++ A S+  C  +  +D+++N   G I  ++  LT L    + NN   G +
Sbjct: 487 HLRENELVGNIPA-SLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNL 545

Query: 508 KAGLLN-----------------------SHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 544
              L+N                       S   +  D++ N   G IP  +G  + LD L
Sbjct: 546 PDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query: 545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNL-SSIMHLYLQNNALSGQIP 603
            + KN   G IP       +L LLD+S N L G I   L L   + H+ L NN LSG IP
Sbjct: 606 RLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIP 665

Query: 604 STLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGIL 663
           + L +   L  L L  NKF G +P +I + + +  L L GN L G IP  +  LQ L  L
Sbjct: 666 TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL 725

Query: 664 DLSHNKLNGSIPSCF--VNMLF-WREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWL 720
           +L  N+L+G +PS    ++ LF  R     L G    I  ++G L  +     S LDL  
Sbjct: 726 NLEENQLSGPLPSTIGKLSKLFELRLSRNALTGE---IPVEIGQLQDL----QSALDL-- 776

Query: 721 FGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRAL 780
               Y     R                S L  +  +DLS+N+L GE+P +IG++  +  L
Sbjct: 777 ---SYNNFTGRIPSTI-----------STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYL 822

Query: 781 NLS 783
           NLS
Sbjct: 823 NLS 825

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  221 bits (564), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 216/701 (30%), Positives = 320/701 (45%), Gaps = 96/701 (13%)

Query: 144 SQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLK 202
           S  +ANL  L+ L+L+ N  + G     +G LT L  L L  N  SGS+ + +   +N+ 
Sbjct: 89  SPAIANLTYLQVLDLTSNSFT-GKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIF 147

Query: 203 VLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG 262
            L +RNNLL+G V  + IC+  +L  +    NNL G++P CL DL+ L++   + NHL+G
Sbjct: 148 YLDLRNNLLSGDVPEE-ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTG 206

Query: 263 NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQ 322
           ++P  I  L +L  L LS N   G+ P     N  NL+ L+L  + NL    E  IP   
Sbjct: 207 SIPVSIGTLANLTDLDLSGNQLTGKIPRDF-GNLLNLQSLVL--TENL---LEGDIPA-- 258

Query: 323 LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS 382
               ++ NC+  V             L+L  N+L G  P  L  N  +L+ LR+  N  +
Sbjct: 259 ----EIGNCSSLVQ------------LELYDNQLTGKIPAEL-GNLVQLQALRIYKNKLT 301

Query: 383 GILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMK 442
             +     +   L HL +S N+L G + + +G  ++ L  + +  NNF G  P SI  ++
Sbjct: 302 SSIPSSLFRLTQLTHLGLSENHLVGPISEEIGF-LESLEVLTLHSNNFTGEFPQSITNLR 360

Query: 443 ELFLLDLSRNKFSGDLSA-----------------------TSVIRCASLEYLDVSENNF 479
            L +L +  N  SG+L A                       +S+  C  L+ LD+S N  
Sbjct: 361 NLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQM 420

Query: 480 YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS 539
            G I P       L ++ +  NHFTG+I   + N   L  L +++N L+G +   IG   
Sbjct: 421 TGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQ 479

Query: 540 YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNAL 598
            L +L +S N L G IP +I N + L +L L  N   G I   + NL+ +  L + +N L
Sbjct: 480 KLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDL 539

Query: 599 SGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ 658
            G IP  +F    L  LDL +NKF G+IP   +    L  L L+GN   G IP +L  L 
Sbjct: 540 EGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLS 599

Query: 659 KLGILDLSHNKLNGSIP----SCFVNM-LFWREGNGDLYGSGLYIYFQLGGLHSI----- 708
            L   D+S N L G+IP    +   NM L+    N  L G+   I  +LG L  +     
Sbjct: 600 LLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGT---IPKELGKLEMVQEIDL 656

Query: 709 ------GTYYNS--------TLDL------------WLFGDDYITLPQRARVQFVTKNRY 742
                 G+   S        TLD                G D I     +R  F  +   
Sbjct: 657 SNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQ 716

Query: 743 EFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
            F    N+ ++  +DLS N LTGEIP  +  L  ++ L L+
Sbjct: 717 SF---GNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 227/707 (32%), Positives = 340/707 (48%), Gaps = 61/707 (8%)

Query: 16  LTSWVDDGISD----CCDWERVTCDATAGQVIQLSLDFARM------FDFYNSSD-GFPI 64
           L+SWV D  ++    C  W  V+C++  G + +L+L    +      F F + S+  +  
Sbjct: 50  LSSWVHDANTNTSFSCTSWYGVSCNS-RGSIEELNLTNTGIEGTFQDFPFISLSNLAYVD 108

Query: 65  LNFSLF---LPFQ-----ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND 116
           L+ +L    +P Q     +L   DLS N+  G    +   S G+ K L +L L + N+  
Sbjct: 109 LSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG----EISPSLGNLKNLTVLYL-HQNYLT 163

Query: 117 SVLP-YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNL 175
           SV+P  L  + S+T L L  N++ G  PS  L NL+NL  L L  N ++ G     LGN+
Sbjct: 164 SVIPSELGNMESMTDLALSQNKLTGSIPSS-LGNLKNLMVLYLYENYLT-GVIPPELGNM 221

Query: 176 TNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN 234
            ++  L LS N+++GS+ + L   +NL VL +  N L G +  + I  ++++T L L +N
Sbjct: 222 ESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPE-IGNMESMTNLALSQN 280

Query: 235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLT 294
            L G +P  L +L  L +L +  N+L+G +P  + N+ S+  L LS+N   G  P SL  
Sbjct: 281 KLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSL-G 339

Query: 295 NHSNLEVLLLK---VSSNLRLKTENWIPTFQLKV------LQLPNC--NLK--------- 334
           N  NL +L L    ++  +  +  N      L++        +P+   NLK         
Sbjct: 340 NLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYL 399

Query: 335 -----VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK 389
                VIP  L +      LDLS NKL G+ P     N TKLE L L  N  SG +    
Sbjct: 400 NYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSF-GNFTKLESLYLRVNHLSGAIPPGV 458

Query: 390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449
                L  L +  NN TG  P+ +    +KL  I +  N+ EG IP S+ + K L     
Sbjct: 459 ANSSHLTTLILDTNNFTGFFPETV-CKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARF 517

Query: 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA 509
             NKF+GD+     I    L ++D S N F+G I   +    +L  L + NN+ TG I  
Sbjct: 518 LGNKFTGDIFEAFGIY-PDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPT 576

Query: 510 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLD 569
            + N   LV LD+S N L G +P  IGN + L  L ++ N L G +P  ++    L+ LD
Sbjct: 577 EIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLD 636

Query: 570 LSENRLFGSIASSLNLSSIMH-LYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPD 628
           LS N     I  + +    +H + L  N   G IP  L + T+L  LDL  N+  G IP 
Sbjct: 637 LSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPS 695

Query: 629 QINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
           Q+++   L  L L  N L G IP     +  L  +D+S+NKL G +P
Sbjct: 696 QLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLP 742

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  213 bits (542), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 227/728 (31%), Positives = 343/728 (47%), Gaps = 52/728 (7%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
            + L+ L L+GN F G    + ++     K L+ L+L+ N+    +   L+ L  L  L+
Sbjct: 88  LKNLRELCLAGNQFSGKIPPEIWNL----KHLQTLDLSGNSLTGLLPRLLSELPQLLYLD 143

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  N   G  P     +L  L +L++S N +S G     +G L+NL  L +  N  SG +
Sbjct: 144 LSDNHFSGSLPPSFFISLPALSSLDVSNNSLS-GEIPPEIGKLSNLSNLYMGLNSFSGQI 202

Query: 193 -TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK 251
            +E+     LK     +   NG +  K I +LK+L +LDL  N L+  +P    +L  L 
Sbjct: 203 PSEIGNISLLKNFAAPSCFFNGPL-PKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLS 261

Query: 252 VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN-L 310
           +L++    L G +P  + N  SL+ L LS N+  G  PL L    S + +L      N L
Sbjct: 262 ILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLEL----SEIPLLTFSAERNQL 317

Query: 311 RLKTENWIPTFQ-LKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNN 368
                +W+  ++ L  L L N      IP  +      K L L+SN L G+ P  L  + 
Sbjct: 318 SGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSG 377

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
           + LE + LS N  SG ++        L  L ++NN + G +P+++  +   LM +D+  N
Sbjct: 378 S-LEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL--PLMALDLDSN 434

Query: 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM 488
           NF G IP S+ +   L     S N+  G L A  +   ASL+ L +S+N   G I     
Sbjct: 435 NFTGEIPKSLWKSTNLMEFTASYNRLEGYLPA-EIGNAASLKRLVLSDNQLTGEIPREIG 493

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
            LT L  L L  N F GKI   L +   L  LD+ +N L G IP  I   + L  L++S 
Sbjct: 494 KLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSY 553

Query: 549 NHLEGNIPVQINN-FRQLQL-----------LDLSENRLFGSIASSLNLSSIM-HLYLQN 595
           N+L G+IP + +  F Q+++            DLS NRL G I   L    ++  + L N
Sbjct: 554 NNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSN 613

Query: 596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC 655
           N LSG+IP++L R T L  LDL  N   G IP ++ N  +L+ L L  N L G IP +  
Sbjct: 614 NHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFG 673

Query: 656 QLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNST 715
            L  L  L+L+ NKL+G +P+   N+        +L    L      G L S  +     
Sbjct: 674 LLGSLVKLNLTKNKLDGPVPASLGNL-------KELTHMDLSFNNLSGELSSELSTMEKL 726

Query: 716 LDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELP 775
           + L++            + +F  +   E  N + L Y+   D+S N L+GEIP++I  LP
Sbjct: 727 VGLYI-----------EQNKFTGEIPSELGNLTQLEYL---DVSENLLSGEIPTKICGLP 772

Query: 776 KVRALNLS 783
            +  LNL+
Sbjct: 773 NLEFLNLA 780

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  209 bits (531), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 186/594 (31%), Positives = 292/594 (49%), Gaps = 23/594 (3%)

Query: 99  GSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNL 158
           G+  KL+++ LN N F  S+   +N L+ L + N+  N++ G  P + + +L NL+ L  
Sbjct: 130 GNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEE-IGDLYNLEELVA 188

Query: 159 SWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVES 217
             N ++    R  LGNL  L       N  SG++ TE+    NLK+LG+  N ++G +  
Sbjct: 189 YTNNLTGPLPR-SLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGEL-P 246

Query: 218 KGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYL 277
           K I  L  L E+ L +N   G +P  + +L  L+ L +  N L G +PS I N+ SL+ L
Sbjct: 247 KEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKL 306

Query: 278 ALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL----PNCNL 333
            L  N   G  P  L      +E+     S NL L  E  +   ++  L+L     N   
Sbjct: 307 YLYQNQLNGTIPKELGKLSKVMEI---DFSENL-LSGEIPVELSKISELRLLYLFQNKLT 362

Query: 334 KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHD 393
            +IP+ L    +   LDLS N L G  P    QN T +  L+L +NS SG++      + 
Sbjct: 363 GIIPNELSKLRNLAKLDLSINSLTGPIPPGF-QNLTSMRQLQLFHNSLSGVIPQGLGLYS 421

Query: 394 LLRHLDISNNNLTGMLPQNMGIVIQK--LMYIDISKNNFEGNIPYSIGEMKELFLLDLSR 451
            L  +D S N L+G +P     + Q+  L+ +++  N   GNIP  +   K L  L +  
Sbjct: 422 PLWVVDFSENQLSGKIPP---FICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVG 478

Query: 452 NKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGL 511
           N+ +G    T + +  +L  +++ +N F G + P      +L+ L+L  N F+  +   +
Sbjct: 479 NRLTGQF-PTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI 537

Query: 512 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571
                LV  ++S+N L+G IP  I N   L  L +S+N   G++P ++ +  QL++L LS
Sbjct: 538 SKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLS 597

Query: 572 ENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL-FRSTELLTLDLRDNKFFGRIPDQ 629
           ENR  G+I  ++ NL+ +  L +  N  SG IP  L   S+  + ++L  N F G IP +
Sbjct: 598 ENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPE 657

Query: 630 INNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP--SCFVNM 681
           I N   L  L L  N+L G+IP     L  L   + S+N L G +P    F NM
Sbjct: 658 IGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNM 711

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  209 bits (531), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 208/662 (31%), Positives = 320/662 (48%), Gaps = 100/662 (15%)

Query: 147 LANLRNL--KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPF---RNL 201
           L+NL +L  K  NLS +  S+  ++ G+     L+ +DL+ N ISG +++++ F    NL
Sbjct: 107 LSNLESLVLKNANLSGSLTSAAKSQCGV----TLDSIDLAENTISGPISDISSFGVCSNL 162

Query: 202 KVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG--QLPWCLS-DLIGLKVLDISFN 258
           K L +  N L+   +        +L  LDL  NN+ G    PW  S   + L+   I  N
Sbjct: 163 KSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGN 222

Query: 259 HLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWI 318
            L+G++P +  +  +L YL LS NNF   FP               K  SNL+       
Sbjct: 223 KLAGSIPEL--DFKNLSYLDLSANNFSTVFPS-------------FKDCSNLQ------- 260

Query: 319 PTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN 378
                                         LDLSSNK  G+  + L  +  KL  L L+N
Sbjct: 261 -----------------------------HLDLSSNKFYGDIGSSL-SSCGKLSFLNLTN 290

Query: 379 NSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
           N F G++  PK+  + L++L +  N+  G+ P  +  + + ++ +D+S NNF G +P S+
Sbjct: 291 NQFVGLV--PKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESL 348

Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
           GE   L L+D+S N FSG L   ++++ ++++ + +S N F G +  ++ NL +L  L +
Sbjct: 349 GECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDM 408

Query: 499 KNNHFTGKIKAGLLNS--HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 556
            +N+ TG I +G+     + L VL + NNL  G IP  + N S L  L +S N+L G+IP
Sbjct: 409 SSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIP 468

Query: 557 VQINNFRQLQLLDLSENRLFGSIASSLN-LSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
             + +  +L+ L L  N+L G I   L  L ++ +L L  N L+G IP++L   T+L  +
Sbjct: 469 SSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWI 528

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
            L +N+  G IP  +   S L +L L  N + G IP  L   Q L  LDL+ N LNGSIP
Sbjct: 529 SLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIP 588

Query: 676 SCFVNMLFWREGN--GDLYGSGLYIYFQLGG---LHSIGTYYNSTLDLWLFG----DDYI 726
                 LF + GN    L     Y+Y +  G    H  G       +L  FG    +   
Sbjct: 589 P----PLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAG-------NLLEFGGIRQEQLD 637

Query: 727 TLPQRARVQF------VTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRAL 780
            +  R    F      +T+  +  +NGS    M  +DLSYN+L G IP E+G +  +  L
Sbjct: 638 RISTRHPCNFTRVYRGITQPTFN-HNGS----MIFLDLSYNKLEGSIPKELGAMYYLSIL 692

Query: 781 NL 782
           NL
Sbjct: 693 NL 694

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 205/628 (32%), Positives = 294/628 (46%), Gaps = 34/628 (5%)

Query: 96  DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKA 155
           + + SSK    +N N ++F  S      +L S+  LNL    I G       ++L NL  
Sbjct: 63  NQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTF 122

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGS 214
           ++LS N  S   + L  G  + LE  DLS N++ G +  EL    NL  L +  N LNGS
Sbjct: 123 VDLSMNRFSGTISPL-WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGS 181

Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSL 274
           + S+ I  L  +TE+ + +N L G +P    +L  L  L +  N LSG++PS I NL +L
Sbjct: 182 IPSE-IGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNL 240

Query: 275 EYLALSDNNFQGEFPLSL--LTNHSNLEVLLLKVSSNLRLKTENW--IPTFQLKVLQL-- 328
             L L  NN  G+ P S   L N + L +   ++S  +  +  N   + T  L   +L  
Sbjct: 241 RELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTG 300

Query: 329 --PNC--NLKV--------------IPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTK 370
             P+   N+K               IP  L        L++S NKL G  P    +  T 
Sbjct: 301 PIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGK-LTA 359

Query: 371 LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
           LE L L +N  SG +         L  L +  NN TG LP  +     KL  + +  N+F
Sbjct: 360 LEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTI-CRGGKLENLTLDDNHF 418

Query: 431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNL 490
           EG +P S+ + K L  +    N FSGD+S    +   +L ++D+S NNF+G +   +   
Sbjct: 419 EGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVY-PTLNFIDLSNNNFHGQLSANWEQS 477

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
            +L    L NN  TG I   + N   L  LD+S+N ++G +P  I N + +  L ++ N 
Sbjct: 478 QKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNR 537

Query: 551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRS 609
           L G IP  I     L+ LDLS NR    I  +L NL  + ++ L  N L   IP  L + 
Sbjct: 538 LSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKL 597

Query: 610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK 669
           ++L  LDL  N+  G I  Q  +   L  L L  N L GQIP +   +  L  +D+SHN 
Sbjct: 598 SQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNN 657

Query: 670 LNGSIP--SCFVNMLFWR-EGNGDLYGS 694
           L G IP  + F N      EGN DL GS
Sbjct: 658 LQGPIPDNAAFRNAPPDAFEGNKDLCGS 685

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  206 bits (525), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 207/662 (31%), Positives = 319/662 (48%), Gaps = 100/662 (15%)

Query: 147 LANLRNL--KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPF---RNL 201
           L+NL +L  K  NLS +  S+  ++ G+     L+ +DL+ N ISG +++++ F    NL
Sbjct: 107 LSNLESLVLKNANLSGSLTSAAKSQCGV----TLDSIDLAENTISGPISDISSFGVCSNL 162

Query: 202 KVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG--QLPWCLS-DLIGLKVLDISFN 258
           K L +  N L+   +        +L  LDL  NN+ G    PW  S   + L+   +  N
Sbjct: 163 KSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGN 222

Query: 259 HLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWI 318
            L+G++P +  +  +L YL LS NNF   FP               K  SNL+       
Sbjct: 223 KLAGSIPEL--DFKNLSYLDLSANNFSTVFPS-------------FKDCSNLQ------- 260

Query: 319 PTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN 378
                                         LDLSSNK  G+  + L  +  KL  L L+N
Sbjct: 261 -----------------------------HLDLSSNKFYGDIGSSL-SSCGKLSFLNLTN 290

Query: 379 NSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
           N F G++  PK+  + L++L +  N+  G+ P  +  + + ++ +D+S NNF G +P S+
Sbjct: 291 NQFVGLV--PKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESL 348

Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
           GE   L L+D+S N FSG L   ++ + ++++ + +S N F G +  ++ NL +L  L +
Sbjct: 349 GECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDM 408

Query: 499 KNNHFTGKIKAGLLNS--HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 556
            +N+ TG I +G+     + L VL + NNL  G IP  + N S L  L +S N+L G+IP
Sbjct: 409 SSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIP 468

Query: 557 VQINNFRQLQLLDLSENRLFGSIASSLN-LSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
             + +  +L+ L L  N+L G I   L  L ++ +L L  N L+G IP++L   T+L  +
Sbjct: 469 SSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWI 528

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
            L +N+  G IP  +   S L +L L  N + G IP  L   Q L  LDL+ N LNGSIP
Sbjct: 529 SLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIP 588

Query: 676 SCFVNMLFWREGN--GDLYGSGLYIYFQLGG---LHSIGTYYNSTLDLWLFG----DDYI 726
                 LF + GN    L     Y+Y +  G    H  G       +L  FG    +   
Sbjct: 589 P----PLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAG-------NLLEFGGIRQEQLD 637

Query: 727 TLPQRARVQF------VTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRAL 780
            +  R    F      +T+  +  +NGS    M  +DLSYN+L G IP E+G +  +  L
Sbjct: 638 RISTRHPCNFTRVYRGITQPTFN-HNGS----MIFLDLSYNKLEGSIPKELGAMYYLSIL 692

Query: 781 NL 782
           NL
Sbjct: 693 NL 694

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	783
297842171	966	leucine-rich repeat family protein [Arab	0.969	0.785	0.429	1e-151
225465991	1031	PREDICTED: LRR receptor-like serine/thre	0.979	0.743	0.401	1e-151
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.979	0.747	0.418	1e-149
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.954	0.510	0.413	1e-148
359483099	1231	PREDICTED: probable LRR receptor-like se	0.985	0.627	0.408	1e-148
15221162	965	receptor like protein 15 [Arabidopsis th	0.960	0.779	0.424	1e-148
357468861	1016	Receptor-like protein kinase [Medicago t	0.934	0.720	0.422	1e-147
358345693	1011	Receptor-like protein kinase [Medicago t	0.934	0.724	0.422	1e-147
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.979	0.718	0.414	1e-144
240254367	976	receptor like protein 14 [Arabidopsis th	0.961	0.771	0.436	1e-144

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 342/797 (42%), Positives = 472/797 (59%), Gaps = 38/797 (4%)

Query: 2   FFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDG 61
           + +S ++ + +D +L +W +D  SDCC W+ V C+  +G+V +++     + D    +  
Sbjct: 41  YMISRTEEDQSDSVLPTWTNDTTSDCCRWKGVACNRVSGRVTEIAFGGLSLKDNSLLNL- 99

Query: 62  FPILNFSLFLPFQELQILDLSGNYFDG-WNENKDYDSSGSSKKLKILNLNYNNFNDSVLP 120
                 SL  PF++++ L+LS + F G +++ + Y S    +KL+IL+L+ N FN+S+  
Sbjct: 100 ------SLLHPFEDVRSLNLSSSRFSGLFDDVEGYKSLRRLRKLEILDLSSNKFNNSIFH 153

Query: 121 YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEV 180
           +L+  TSLTTL L  N + G  P++ L +L NL+ L+LS N  +       L +L  L+ 
Sbjct: 154 FLSAATSLTTLFLRSNNMVGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKA 213

Query: 181 LDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           LDLS N  SGS+     F          NL    +   GICELKN  ELDL +N L G  
Sbjct: 214 LDLSGNEFSGSMELQGKF--------STNLQEWCIH--GICELKNTQELDLSQNQLVGHF 263

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE 300
           P CL+ L GL+VLD+S N L+G +PS + +L SLEYL+L DN+F+G F    L N SNL 
Sbjct: 264 PSCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLSLFDNDFEGSFSFGSLANLSNLM 323

Query: 301 VL-LLKVSSNLRLKTE-NWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVG 358
           VL L   SS+L++ +E +W P FQL V+ L +CN++ +P FL+HQ D + +DLS+NK+ G
Sbjct: 324 VLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLIHQKDLRHVDLSNNKISG 383

Query: 359 NFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ 418
             P+WL+ NNTKL+VL L NN F+   Q+PK  HDLL  LD S N    + P+N+G +  
Sbjct: 384 KLPSWLLANNTKLKVLLLQNNFFTS-FQIPKSAHDLL-FLDASANEFNHLFPENIGWIFP 441

Query: 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478
            L Y++I KN+F+GN+P S+G MK L  LDLS N F G L  + V  C S+  L +S N 
Sbjct: 442 HLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLPRSFVNGCYSMAILKLSHNK 501

Query: 479 FYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 538
             G IFP   NLT L  L++ NN FTGKI  GL +   L +LD+SNN L+G IP WIG  
Sbjct: 502 LSGEIFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGEL 561

Query: 539 SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNAL 598
             L  LL+S N L+G IP  + N   LQLLDLS N L G I    +    + L LQ+N L
Sbjct: 562 PSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLSGGIPPHHDSRDGVVLLLQDNNL 621

Query: 599 SGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ 658
           SG I  TL  + E+  LDLR+N+F G IP+ IN  + + +LLLRGN L G+IP  LC L 
Sbjct: 622 SGTIADTLLVNVEI--LDLRNNRFSGNIPEFINTQN-ISILLLRGNKLTGRIPHQLCGLS 678

Query: 659 KLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYG------------SGLYIYFQLGGLH 706
            + +LDLS+N+LNGSIPSC  N  F        Y             +G  ++  L    
Sbjct: 679 NIQLLDLSNNRLNGSIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDLSSNK 738

Query: 707 SIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGE 766
           + G Y+ S L L  F  DY    Q  +++F TK+RY+ Y G NL  + GIDLS NEL+GE
Sbjct: 739 NSGIYFKSLLMLDPFSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLLFGIDLSENELSGE 797

Query: 767 IPSEIGELPKVRALNLS 783
           IP E G L ++RALNLS
Sbjct: 798 IPVEFGGLLELRALNLS 814

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465991|ref|XP_002264576.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 345/859 (40%), Positives = 476/859 (55%), Gaps = 92/859 (10%)

Query: 7   SDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFP--- 63
           S+ E AD +L SWV+D  SDCC WERV C++T G V QLSL+  R  +FY+   G     
Sbjct: 12  SNNEDADRLLPSWVNDEESDCCYWERVVCNSTTGTVTQLSLNNIRQIEFYHRVYGLAPPK 71

Query: 64  ---ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLP 120
               LN SLF PF+EL  LDLS N+F    E++ ++     KKL++LN+  N FN+S+ P
Sbjct: 72  KTWFLNVSLFHPFEELVSLDLSENWFADSLEDQGFEKLKGLKKLEMLNIGQNYFNNSIFP 131

Query: 121 YLNTLTSLTTLNLYYNRIGGL---NPSQGLANLRNLKALNLSWNGI-----SSGATRLG- 171
            +  LTSL  L L   ++ G      S+ ++N + L  L LS N +      S +T L  
Sbjct: 132 SVGALTSLRVLILRETKLEGSYLDRGSKSISNWKKLVTLVLSGNQLDDSIFQSLSTALPS 191

Query: 172 --------------------LGNLTNLEVLDLSANRISGSLT--ELAPFRNLKVLGMRNN 209
                               L N  +LE LDL  N ++GS+    L PF NL+VL + NN
Sbjct: 192 LQNLIIGQNYNFKGSFSAKELSNFKDLETLDLRTNNLNGSIKIQGLVPFNNLEVLDLSNN 251

Query: 210 LLNGSVES------------------------KGICELKNLTELDLGENNLEGQLPWCLS 245
              GS+                          +G C+LKNL ELDL  N+L+G  P CLS
Sbjct: 252 RFTGSIPPYIWNLTSLQALSLADNQLTGPLPVEGFCKLKNLQELDLSGNSLDGMFPPCLS 311

Query: 246 DLIGLKVLDISFNHLSGNLP-SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           ++  LK+LD+S N  +G +P S+I+NLTSLEYL L  N  +G    S  +NHSNLEV++L
Sbjct: 312 NMRSLKLLDLSLNQFTGKIPSSLISNLTSLEYLDLGSNRLEGRLSFSAFSNHSNLEVIVL 371

Query: 305 KVSSNL-RLKTE--NWIPTFQLKVLQLPNCNLK----VIPSFLLHQYDFKFLDLSSNKLV 357
              S++  ++TE  +W+P FQLK+L L  CNL     +IP FL  QYD   +DL  N L 
Sbjct: 372 SSDSDIFEVETESTSWVPQFQLKILSLAYCNLNKQTGIIPKFLSQQYDLIAVDLPHNDLK 431

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVI 417
           G FP+ +++NN +LE L L NNS  G   LP   +     +D S+N+L G L +NM  + 
Sbjct: 432 GEFPSVILENNRRLEFLNLRNNSLRGEFPLPPYPNIYTLWVDASHNHLGGRLKENMKEMF 491

Query: 418 QKLMYIDISKNNFEGNIPYSIG-EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE 476
             L Y+++S N FEG+IP SIG +   L  LDLS N FSG++    + RC  L  L++S 
Sbjct: 492 PYLRYLNLSGNGFEGHIPSSIGNQSSTLEALDLSNNNFSGEVPVLLIERCPRLFILNLSN 551

Query: 477 NNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG 536
           N  +G IF T  N+ +L +L L NNHFTG +  GL   + L  LD+SNN +SG IP W+ 
Sbjct: 552 NRLHGQIFSTRFNMPELSFLGLNNNHFTGTLSNGLSECNQLRFLDVSNNYMSGKIPTWMP 611

Query: 537 NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNN 596
           N +YLD L++S N   G +P   + F +L+LLDLS+N   GS+ S      +MH++L+ N
Sbjct: 612 NMTYLDTLILSNNSFHGQVP---HEFTRLKLLDLSDNLFAGSLPSLKTSKFLMHVHLKGN 668

Query: 597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ 656
             +G IP     S+ELLTLDL DN   G IP   +  S LR+  LR N  +GQIP  LCQ
Sbjct: 669 RFTGSIPEDFLNSSELLTLDLGDNSLSGNIPKSFSALSSLRIFSLRENNFKGQIPNFLCQ 728

Query: 657 LQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTL 716
           L K+ I+DLS N  +G IP CF N+ F   G    +   ++    L G+    TY     
Sbjct: 729 LNKISIMDLSSNNFSGPIPQCFRNLSFGNRG----FNEDVFRQNSLMGVERFVTYIYRKS 784

Query: 717 DLWLFGDDYITLPQRA------------RVQFVTKNRYEFYNGSNLNYMSGIDLSYNELT 764
            +     D+  + +R             +++F+TKNR+  Y G  LN+MSG+DLS N LT
Sbjct: 785 RI---ERDFYKIHERGGEKNDHQQEKQDQIEFITKNRHNTYKGDILNFMSGLDLSCNNLT 841

Query: 765 GEIPSEIGELPKVRALNLS 783
           G+IP E+G+L  + ALNLS
Sbjct: 842 GDIPYELGQLSSIHALNLS 860

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/817 (41%), Positives = 484/817 (59%), Gaps = 50/817 (6%)

Query: 10  EYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSL-DFARMFDF------YNSSDGF 62
           E+AD +L SW+D+  S+CC+WERV C+ T G+V +L L D  R  +F      +  +  F
Sbjct: 46  EHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFLNDITRQQNFLEDDWYHYENVKF 105

Query: 63  PILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL 122
            +LN SLFLPF+EL  L+LS N FDG+ EN+ +    S KKL+IL+++ N F+ S L  L
Sbjct: 106 WLLNVSLFLPFEELHHLNLSANSFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSL 165

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
            T+TSL TL +    + G    + LA+LRNL+ L+LS+N + S        +L+NLE+LD
Sbjct: 166 GTITSLKTLAICSMGLNGSFSIRELASLRNLEVLDLSYNDLESFQLLQDFASLSNLELLD 225

Query: 183 LSANRISGSLTE----LAPFRNLKVLGMRNN------------------------LLNGS 214
           LS N  SGS+      ++   NL+VL +  N                         LNGS
Sbjct: 226 LSYNLFSGSIPSSIRLMSSINNLEVLDLSGNSFSGIVPSSIRLLSSLKSLSLAGNHLNGS 285

Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPS-VIANLTS 273
           + ++G C+L  L ELDL  N  +G LP CL++L  L++LD+S N  SGNL S ++ NLTS
Sbjct: 286 LANQGFCQLNKLQELDLSYNLFQGILPPCLNNLTSLRLLDLSVNLFSGNLSSPLLPNLTS 345

Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN-LRLKTE---NWIPTFQLKVLQLP 329
           LEY+ LS N F+G F  S   NHS L+++ L +++N   ++TE    W+P FQLK L L 
Sbjct: 346 LEYIDLSYNQFEGSFSFSSFANHSKLQMVKLGMNNNKFEVETEYPIGWVPLFQLKALSLD 405

Query: 330 NCNLKV-IPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP 388
           +C L   +PSFL +Q+    +DLS N L G+FP WL++NNT+L+ L L NNS  G L LP
Sbjct: 406 SCKLTGDLPSFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSLMGQL-LP 464

Query: 389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLD 448
             ++  +  LDIS+N L G L +N+  +I  + Y+++S N FEG +P SI E++ L+ LD
Sbjct: 465 LERNTRIHSLDISHNQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPSSIVELRALWYLD 524

Query: 449 LSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK 508
           LS N FSG++    ++    L  L +S N F+G IF    NL +L  LYL NN  TG + 
Sbjct: 525 LSTNNFSGEV-PKQLLAAKDLGVLKLSNNKFHGEIFSRDFNLIRLEVLYLGNNQLTGTLS 583

Query: 509 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLL 568
             +  S  L VLD+SNN +SG IP  IGN +YL  L++  N  +G +P +I+    L+ L
Sbjct: 584 NVISKSSWLGVLDVSNNYMSGEIPSQIGNMTYLTTLVLGNNSFKGKLPPEISQLWGLEFL 643

Query: 569 DLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPD 628
           D+S+N L GS+     + S+ HL+LQ N  +G IP     S+ LLTLD+RDN+ FG IP+
Sbjct: 644 DVSQNALSGSLPCLKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLDMRDNRLFGSIPN 703

Query: 629 QINN-HSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREG 687
            I+    +LR+ LL GN L G IP  LC L ++ ++DLS+N  +G IP CF ++ F    
Sbjct: 704 SISALLKQLRIFLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKCFGHIRFGEMK 763

Query: 688 NGD-LYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYN 746
             D ++G  + I +   G+ S   Y    +  W   D       +  V+FVTKNR +FY 
Sbjct: 764 KEDNVFGQFIEIRY---GMDSHLVYAGYLVKYW--EDLSSVYKGKDEVEFVTKNRRDFYR 818

Query: 747 GSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
           G  L +MSG+DLS N LTGEIP E+G L  +RALNLS
Sbjct: 819 GGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLS 855

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 345/834 (41%), Positives = 476/834 (57%), Gaps = 87/834 (10%)

Query: 16   LTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQE 75
            L SW D+  SDCC WERV C  T G+V++L L+  R      SS     LN SLF+PF E
Sbjct: 491  LPSWEDEE-SDCCGWERVECSNTTGRVLKLFLNNTR-----ESSQEDLYLNASLFIPFVE 544

Query: 76   LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY-------------- 121
            L+IL+LS N      ++   +       L++L+L+ N  + S+L                
Sbjct: 545  LKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTELSSLKSLSLGT 604

Query: 122  ---------LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN----------- 161
                     L  L +L  L+L  N +     + GL +LR L+ L+L  N           
Sbjct: 605  NILEGSIQELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLETNDFNISTLKSLG 664

Query: 162  -------------GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAP-FRNLKVLGMR 207
                          +    T   L NL NLEVLDLS+  IS S+ ++     +LK L +R
Sbjct: 665  RLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALSLR 724

Query: 208  NNLLNGSVES-KGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNL-P 265
            +N +NGS  + +G+C+LKNL ELDL +N  EG +  CL +L  L+ LD+S N  SGNL  
Sbjct: 725  SNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDS 784

Query: 266  SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN---LRLKTENWIPTFQ 322
            S+ A L  LE+L+LS N FQ   P+S    HS LEVL L   +N   L  + + W+P+FQ
Sbjct: 785  SLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQ 844

Query: 323  LKVLQLPNCNLKV--IPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNS 380
            LKV +L +C LK   IPSFL +Q+D + +DLS++ L  +FPTWLM+NNT+LE L L NNS
Sbjct: 845  LKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNS 904

Query: 381  FSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE 440
             +G   LP   +     +DISNN L G +P N+ + +  LM++++S+N+FEG+IP S G 
Sbjct: 905  LTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGG 963

Query: 441  MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN 500
            M++L  LDLS N F+G +     + C SLEYL +S+N+ +G +FP   NL  LR L L +
Sbjct: 964  MRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDD 1023

Query: 501  NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 560
            NHF+GKI   L NS GL  L +S+N +SG +P WIGN S L  L+M  N LEG IPV+  
Sbjct: 1024 NHFSGKI-PDLSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFC 1082

Query: 561  NFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
            +   L+LLDLS N L GS+ S  + S ++H++LQ N L+G +     RS +L TLD+R+N
Sbjct: 1083 SLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNN 1142

Query: 621  KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN 680
               G IPD I+  S L +LLL+GN+ QG+IP  LCQL K+ ILDLS+N L+G IPSC +N
Sbjct: 1143 NLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSC-LN 1201

Query: 681  MLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQ---------- 730
             + +R G            F+ G    I  + +     +L+   +I L Q          
Sbjct: 1202 KIQFRTG------------FRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAY 1249

Query: 731  -RARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             +A  +F TKNR +FY G+ L  M+GIDLS N+LTG IP EIG L +V ALNLS
Sbjct: 1250 DKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLS 1303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 345/844 (40%), Positives = 486/844 (57%), Gaps = 72/844 (8%)

Query: 3   FLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFAR----MFD---F 55
           FL ++D  +AD +L SW+D+ ISDCC+WERV C+ T G+V +LSL+  R    M +   +
Sbjct: 40  FLKLNDG-HADFLLPSWIDNNISDCCNWERVICNPTTGRVKKLSLNDIRQQQNMLEVNWY 98

Query: 56  YNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFN 115
           Y  +  F +LN SLFLPF+EL  L+LS N FDG+ EN+ +    S KKL+IL+++ N F+
Sbjct: 99  YYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFKGLSSLKKLEILDISGNEFD 158

Query: 116 DSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNL 175
            S L  L  +TSL TL +    + G  P Q LA+ RNL+ L+LS+N + S     GL +L
Sbjct: 159 KSALKSLGAITSLKTLAIRSMGLDGSFPIQELASSRNLEVLDLSYNDLESFQLVQGLLSL 218

Query: 176 TNLEVLDLSANRIS-------GSLTEL-------------------APFRNLKVLGMR-- 207
             LE+L +S N          G++T L                   A   NL++L +   
Sbjct: 219 KKLEILAISGNEFDKSVIKSLGAITSLKTLVLCRIGLNGSFPIQDFASLSNLEILDLSYN 278

Query: 208 ----------------------NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
                                  N LNGS+ ++G C+L  L ELDL  N  +G LP CL+
Sbjct: 279 SFSGILPSSIRLMSSLKSLSLAGNQLNGSLPNQGFCQLNKLQELDLNSNFFQGILPPCLN 338

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSL-EYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           +L  L++LD+S N  SGN+ S +    +  EY+ LS N F+G F  +   NHSNL+V++ 
Sbjct: 339 NLTSLRLLDLSHNLFSGNVSSSLLPSLTSLEYIDLSYNLFEGPFSFNSFANHSNLQVVIH 398

Query: 305 KVSSN-LRLKTE---NWIPTFQLKVLQLPNCNL-KVIPSFLLHQYDFKFLDLSSNKLVGN 359
              +N   ++TE    W+P FQLKVL L N  L    P FL +Q+    +DLS N L G+
Sbjct: 399 GSDNNKFEIETEYPVGWVPLFQLKVLVLSNYKLIGDFPGFLRYQFRLTVVDLSHNNLTGS 458

Query: 360 FPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQK 419
           FP WL++NNT+LE L L NNS  G L LP   +  +  LDIS+N L G L QN+  +I  
Sbjct: 459 FPNWLLENNTRLEYLVLRNNSLMGQL-LPLRPNSRITSLDISDNRLVGELQQNVANMIPN 517

Query: 420 LMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF 479
           + ++++S N FEG +P SI EM  L+ LDLS N FSG++    ++    LE+L +S N F
Sbjct: 518 IEHLNLSNNGFEGILPSSIAEMSSLWSLDLSANSFSGEV-PKQLLVAKDLEFLKLSNNKF 576

Query: 480 YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS 539
           +G IF    NLT L +L+L NN F G +   +  S  L VLD+SNN +SG IP WIGN +
Sbjct: 577 HGEIFSRDFNLTSLEFLHLDNNQFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMT 636

Query: 540 YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS 599
            L  L++  N  +G +P +I+  ++L+ LD+S+N L GS+ S  ++  + HL+LQ N  +
Sbjct: 637 DLTTLVLGNNSFKGKLPPEISQLQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFT 696

Query: 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK 659
           G IP     S+ LLTLD+RDN+ FG IP+ I+   ELR+ LLRGN L G IP  LC L K
Sbjct: 697 GLIPRDFLNSSNLLTLDIRDNRLFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTK 756

Query: 660 LGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLW 719
           + ++DLS+N  +GSIP CF ++ F     GD + +   +Y  +   +S  + Y   L  +
Sbjct: 757 ISLMDLSNNNFSGSIPKCFGHIQF-----GD-FKTEHNVYKPMFNPYSFFSIYTGYLVKY 810

Query: 720 LFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRA 779
           LF        +   V+FVTKNR   Y G  L++MSG+DLS N LTGEIP E+G L  + A
Sbjct: 811 LFFSTEAHRDEVDEVEFVTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRELGMLSSILA 870

Query: 780 LNLS 783
           LNLS
Sbjct: 871 LNLS 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 335/790 (42%), Positives = 470/790 (59%), Gaps = 38/790 (4%)

Query: 9   REYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFS 68
           R  ++ +L +W +D  SDCC W+ V C+  +G+V ++S     + D    +        S
Sbjct: 45  RTESESVLPTWTNDTTSDCCRWKGVACNRVSGRVTEISFGGLSLKDNSLLNL-------S 97

Query: 69  LFLPFQELQILDLSGNYFDG-WNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTS 127
           L  PF++++ L+LS +   G +++ + Y S    +KL+IL+L  N FN+S+  +L+  TS
Sbjct: 98  LLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATS 157

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANR 187
           LTTL L  N + G  P++ L +L NL+ L+LS N  +       L +L  L+ LDLS N 
Sbjct: 158 LTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNE 217

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
            SGS+     F    +  +++          GICEL N+ ELDL +N L G LP CL+ L
Sbjct: 218 FSGSMELQGKFCTDLLFSIQS----------GICELNNMQELDLSQNKLVGHLPSCLTSL 267

Query: 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL-LLKV 306
            GL+VLD+S N L+G +PS + +L SLEYL+L DN+F+G F    L N SNL VL L   
Sbjct: 268 TGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSK 327

Query: 307 SSNLRLKTEN-WIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLM 365
           SS+L++ +E+ W P FQL V+ L +CN++ +P FLLHQ D + +DLS N + G  P+WL+
Sbjct: 328 SSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLL 387

Query: 366 QNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI 425
            NNTKL+VL L NN F+   Q+PK  H+LL  LD+S N+   + P+N+G +   L Y++ 
Sbjct: 388 ANNTKLKVLLLQNNLFTS-FQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNT 445

Query: 426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP 485
           SKNNF+ N+P S+G M  +  +DLSRN F G+L  + V  C S+  L +S N   G IFP
Sbjct: 446 SKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFP 505

Query: 486 TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 545
              N T +  L++ NN FTGKI  GL +   L +LD+SNN L+G IP WIG    L  LL
Sbjct: 506 ESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALL 565

Query: 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPST 605
           +S N L+G+IP+ + N   LQLLDLS N L G I    +  + + L LQ+N LSG IP T
Sbjct: 566 ISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDT 625

Query: 606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665
           L  + E+  LDLR+N+F G+IP+ IN  + + +LLLRGN   GQIP  LC L  + +LDL
Sbjct: 626 LLANVEI--LDLRNNRFSGKIPEFINIQN-ISILLLRGNNFTGQIPHQLCGLSNIQLLDL 682

Query: 666 SHNKLNGSIPSCFVNML--FWREGNGDLYGSGLYI---YFQLGGLHSI-------GTYYN 713
           S+N+LNG+IPSC  N    F +E     Y  G+      F    LH         G Y+ 
Sbjct: 683 SNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFK 742

Query: 714 STLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGE 773
           S L L     DY    Q  +++F TK+RY+ Y G NL  + G+DLS NEL+GEIP E G 
Sbjct: 743 SLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGG 801

Query: 774 LPKVRALNLS 783
           L ++RALNLS
Sbjct: 802 LLELRALNLS 811

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 349/827 (42%), Positives = 485/827 (58%), Gaps = 95/827 (11%)

Query: 2   FFLSISDREYADEILTSWVDDGISDCCDWERVTC-DATAGQVIQLSLD---FARMFDFYN 57
           +FLS +   Y    L SWVDD  S+CC W  V C + ++G +I+LS+    F   FD   
Sbjct: 41  YFLSQTGDPYNK--LGSWVDDRDSNCCSWNNVKCSNISSGHIIELSIRKLLFDIPFDMK- 97

Query: 58  SSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS 117
                  LN SLF PF+EL++LDLS N F GW  N+ +      K+L+ L+L+ N  N S
Sbjct: 98  -------LNVSLFRPFKELRLLDLSYNSFLGWIGNEGFPRL---KRLETLDLSGNYLNSS 147

Query: 118 VLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS------------------ 159
           +LP L  LT+LTTL L  N +   + +QG +  + L+ L+LS                  
Sbjct: 148 ILPSLKGLTALTTLKLVSNSMENFS-AQGFSRSKELEVLDLSGNRLNCNIITSLHGFTSL 206

Query: 160 ------WNGISSGATRLGLGNLTNLEVLDLSANRISGSL--TELAPFRNLKVLGMRNNLL 211
                 +N  +   + L     + LE+LDL  N+ +GSL   ++   +NLK+L + +N +
Sbjct: 207 RSLILSYNNFNCSLSTLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNLKMLSLNDNQM 266

Query: 212 NGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANL 271
           NG      +C  K+L ELD+ +N    +LP CLS+L  L+VL++S N  SGN PS I+NL
Sbjct: 267 NG------LCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNL 320

Query: 272 TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE----NWIPTFQLKVLQ 327
           TSL YL+   N  QG F LS L NHSNLEVL +   +N+ +  E     W P FQLK L 
Sbjct: 321 TSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLI 380

Query: 328 LPNCNL-----KVIPSFLLHQYDFKFLDLSSNKLVGNFPT-WLMQNNTKLEVLRLSNNSF 381
           + NCNL      VIP+FL +QY+  +L LSSN + G+ P+ WL+ N              
Sbjct: 381 VRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHN-------------- 426

Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM 441
                      D + +LDISNNNL+G+LP+++GI +  + Y++ S N+FEGNIP SIG+M
Sbjct: 427 -----------DDMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKM 475

Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
           K+L LLD S+N FSG+L       C +L+YL +S N  +G+I P + N   +  L+L NN
Sbjct: 476 KQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNN 534

Query: 502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 561
           +F+G ++  L N+  L  L ISNN  SG IP  IG FS +  LLMSKN LEG IP++I++
Sbjct: 535 NFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISS 594

Query: 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK 621
             +LQ+LDLS+N+L GSI     L+ +  LYLQ N LSG IP  L+   +L  LDLR+NK
Sbjct: 595 IWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENK 654

Query: 622 FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
           F G+IP+ ++  SELRVLLL GN  +G+IP+ LC+L+K+ I+DLS N LN SIPSCF NM
Sbjct: 655 FSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNM 714

Query: 682 LF-WREGNGDLYGSGLYIYFQLGGLHSIGTYY----NSTLDLWLFGDDYITLPQRARVQF 736
           LF  R+    ++     +Y    G H   T+Y    + ++DL L  D  I       V+F
Sbjct: 715 LFGMRQYVDAVFDLSSILY----GQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEF 770

Query: 737 VTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
            TK+   FY G  L  M+G+DLS N+LTG IPS+IG+L ++RALNLS
Sbjct: 771 RTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLS 817

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 349/827 (42%), Positives = 485/827 (58%), Gaps = 95/827 (11%)

Query: 2   FFLSISDREYADEILTSWVDDGISDCCDWERVTC-DATAGQVIQLSLD---FARMFDFYN 57
           +FLS +   Y    L SWVDD  S+CC W  V C + ++G +I+LS+    F   FD   
Sbjct: 41  YFLSQTGDPYNK--LGSWVDDRDSNCCSWNNVKCSNISSGHIIELSIRKLLFDIPFDMK- 97

Query: 58  SSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS 117
                  LN SLF PF+EL++LDLS N F GW  N+ +      K+L+ L+L+ N  N S
Sbjct: 98  -------LNVSLFRPFKELRLLDLSYNSFLGWIGNEGFPRL---KRLETLDLSGNYLNSS 147

Query: 118 VLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS------------------ 159
           +LP L  LT+LTTL L  N +   + +QG +  + L+ L+LS                  
Sbjct: 148 ILPSLKGLTALTTLKLVSNSMENFS-AQGFSRSKELEVLDLSGNRLNCNIITSLHGFTSL 206

Query: 160 ------WNGISSGATRLGLGNLTNLEVLDLSANRISGSL--TELAPFRNLKVLGMRNNLL 211
                 +N  +   + L     + LE+LDL  N+ +GSL   ++   +NLK+L + +N +
Sbjct: 207 RSLILSYNNFNCSLSTLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNLKMLSLNDNQM 266

Query: 212 NGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANL 271
           NG      +C  K+L ELD+ +N    +LP CLS+L  L+VL++S N  SGN PS I+NL
Sbjct: 267 NG------LCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNL 320

Query: 272 TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE----NWIPTFQLKVLQ 327
           TSL YL+   N  QG F LS L NHSNLEVL +   +N+ +  E     W P FQLK L 
Sbjct: 321 TSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLI 380

Query: 328 LPNCNL-----KVIPSFLLHQYDFKFLDLSSNKLVGNFPT-WLMQNNTKLEVLRLSNNSF 381
           + NCNL      VIP+FL +QY+  +L LSSN + G+ P+ WL+ N              
Sbjct: 381 VRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHN-------------- 426

Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM 441
                      D + +LDISNNNL+G+LP+++GI +  + Y++ S N+FEGNIP SIG+M
Sbjct: 427 -----------DDMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKM 475

Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
           K+L LLD S+N FSG+L       C +L+YL +S N  +G+I P + N   +  L+L NN
Sbjct: 476 KQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNN 534

Query: 502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 561
           +F+G ++  L N+  L  L ISNN  SG IP  IG FS +  LLMSKN LEG IP++I++
Sbjct: 535 NFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISS 594

Query: 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK 621
             +LQ+LDLS+N+L GSI     L+ +  LYLQ N LSG IP  L+   +L  LDLR+NK
Sbjct: 595 IWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENK 654

Query: 622 FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
           F G+IP+ ++  SELRVLLL GN  +G+IP+ LC+L+K+ I+DLS N LN SIPSCF NM
Sbjct: 655 FSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNM 714

Query: 682 LF-WREGNGDLYGSGLYIYFQLGGLHSIGTYY----NSTLDLWLFGDDYITLPQRARVQF 736
           LF  R+    ++     +Y    G H   T+Y    + ++DL L  D  I       V+F
Sbjct: 715 LFGMRQYVDAVFDLSSILY----GQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEF 770

Query: 737 VTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
            TK+   FY G  L  M+G+DLS N+LTG IPS+IG+L ++RALNLS
Sbjct: 771 RTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLS 817

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 356/858 (41%), Positives = 490/858 (57%), Gaps = 91/858 (10%)

Query: 10  EYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSL-DFARMFD----FYNSSDGFPI 64
           E+AD +L SW+D+  S+CC+WERV C+ T G+V +L   D  R       +Y  +  F +
Sbjct: 46  EHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFFNDITRQHLEDNWYYYENVKFWL 105

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           LN SLFLPF+EL  L+LS N FDG+ EN+ + S    KKL+ILNL  N FN +++  L+ 
Sbjct: 106 LNVSLFLPFEELHHLNLSANSFDGFIENEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSG 165

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANL----------------------------RNLKAL 156
           LTSL TL + YN I GL PSQ  A+L                             NLK L
Sbjct: 166 LTSLKTLVVSYNYIEGLFPSQDFASLNNLEILDLSDFASLNNLEILDLSDFASLSNLKVL 225

Query: 157 NLSWN---GISSGATRLG-----------------------------------LGNLTNL 178
           +LS+N   GI   + RL                                    L NLT+L
Sbjct: 226 DLSYNSFSGIVPSSIRLMSSLKSLSLAGNDLNGSLPNQDLSSNLFSENLSSTLLPNLTSL 285

Query: 179 EVLDLSANRISGSLTELAPFRNLK----VLGMRNNLLNGSV--ESKGICELKNLTELDLG 232
           E +DLS N+  GS +  +   + K    +LG  NN     V     G C+L  L ELDL 
Sbjct: 286 EYIDLSYNQFEGSFSFSSFANHSKLQVVILGSYNNKFELHVLFSFVGFCQLNKLQELDLS 345

Query: 233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPS-VIANLTSLEYLALSDNNFQGEFPLS 291
            N  +G LP CL++L  L++LD+S NHLSGNL S ++ NLTSLEY+ LS N+F+G F  S
Sbjct: 346 YNLFQGTLPPCLNNLTSLRLLDLSSNHLSGNLSSPLLPNLTSLEYIDLSYNHFEGSFSFS 405

Query: 292 LLTNHSNLEVLLLKVSSN-LRLKTE---NWIPTFQLKVLQLPNCNLK-VIPSFLLHQYDF 346
              NHS L+V++L   +N   ++TE    W+P FQLK L L NC L   IP FL +Q+  
Sbjct: 406 SFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKALFLSNCKLTGDIPDFLQYQFKL 465

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
           + +DLS N L G F  WL++NNT+LE L L NNS  G L LP   +  +  LDIS+N L 
Sbjct: 466 EVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLMGQL-LPLRPNTRILSLDISHNQLD 524

Query: 407 GMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466
           G L +N+G +I  ++++++S N FEG +P SI EM  L +LDLS N FSG++    ++  
Sbjct: 525 GRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLSANNFSGEV-PKQLLAT 583

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
             L  L +S N F+G IF    N+T L  LYL NN F G +   +  S  L+VLD+SNN 
Sbjct: 584 KDLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNVISGSSQLMVLDVSNNY 643

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLS 586
           +SG IP  IGN + L  L+M  N+  G +P +I+  +Q++ LD+S+N L GS+ S  ++ 
Sbjct: 644 MSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQLQQMKFLDVSQNALSGSLPSLKSME 703

Query: 587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYL 646
            + HL+LQ N  +G IP     S++LLTLD+RDN+ FG IP+ I+   ELR+LLLRGN  
Sbjct: 704 YLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNRLFGSIPNSISALLELRILLLRGNLF 763

Query: 647 QGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWR-EGNGDLYGSGLYIYFQLGGL 705
            G IP  LC L K+ ++DLS+N  +G IP CF ++ F   +   D++    +I F  GG 
Sbjct: 764 SGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDIRFGEMKKENDVFRQ--FIDFGYGG- 820

Query: 706 HSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTG 765
            S   Y   T+  W F  D     ++  V+FVTKNR++ Y+G  LN+M G+DLS N LTG
Sbjct: 821 DSRNLYVGFTVKKWEFDSD--VYDEKNEVEFVTKNRHDSYSGDILNFMFGLDLSCNNLTG 878

Query: 766 EIPSEIGELPKVRALNLS 783
           EIP ++G+L  + ALNLS
Sbjct: 879 EIPHKLGKLSWIHALNLS 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 341/782 (43%), Positives = 480/782 (61%), Gaps = 29/782 (3%)

Query: 13  DEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLP 72
           D +L +W +D  S+CC WE + C+ T+G++I+LS+      +    +        SL  P
Sbjct: 52  DSVLPTWTNDTKSNCCRWEGLKCNQTSGRIIELSIGQTNFKESSLLNL-------SLLHP 104

Query: 73  FQELQILDLSG---NYFDG-WNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSL 128
           F+EL+ L+LSG   N F+G +++ + Y+S    + L+IL+L+ N+FN+S+ P+LN  TSL
Sbjct: 105 FEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSL 164

Query: 129 TTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRI 188
           TTL +  N IGG  P + L NL  L+ L+LS +G +         +L  L+ LDLSAN  
Sbjct: 165 TTLFIQSNYIGGPLPIKELKNLTKLELLDLSRSGYNGSIPEFT--HLEKLKALDLSANDF 222

Query: 189 SG--SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSD 246
           S    L EL    NL+VLG+  N L+G +  +  CE+KNL +LDL  N  EGQLP CL +
Sbjct: 223 SSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGN 282

Query: 247 LIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKV 306
           L  L+VLD+S N LSGNLP+   +L SLEYL+LSDNNF+G F L+ L N + L+V  L  
Sbjct: 283 LNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSS 342

Query: 307 SSN-LRLKTE-NWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL 364
           +S  L+++TE NW+P FQL V  LP C+L  IP+FL++Q + + +DLSSN+L G+ PTWL
Sbjct: 343 TSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWL 402

Query: 365 MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID 424
           ++NN +L+VL+L NNSF+ I Q+P + H L + LD S N++TG+LP N+G V+ +L++++
Sbjct: 403 LENNPELKVLQLKNNSFT-IFQIPTIVHKL-QVLDFSANDITGVLPDNIGHVLPRLLHMN 460

Query: 425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF 484
            S N F+GN+P S+GEM ++  LDLS N FSG+L  + +  C SL  L +S N+F G I 
Sbjct: 461 GSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPIL 520

Query: 485 PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG-HIPCWIGNFSYLDV 543
           P    LT L  L + NN FTG+I  GL     L + D SNN L+G        + S+L +
Sbjct: 521 PIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIM 580

Query: 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS-LNLSSIMHLYLQNNALSGQI 602
           LL+S N LEG +P  +     L  LDLS N L G + SS +N    + ++L NN+ +G +
Sbjct: 581 LLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPL 640

Query: 603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGI 662
           P TL  +  +  LDLR+NK  G IP Q  N  ++  LLLRGN L G IP  LC L  + +
Sbjct: 641 PVTLLENAYI--LDLRNNKLSGSIP-QFVNTGKMITLLLRGNNLTGSIPRKLCDLTSIRL 697

Query: 663 LDLSHNKLNGSIPSCFVNMLFWREGNG-DLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLF 721
           LDLS NKLNG IP C +N L    G G  L G    I F   G      +Y ST  +  F
Sbjct: 698 LDLSDNKLNGVIPPC-LNHLSTELGEGIGLSGFSQEISF---GDSLQMEFYRSTFLVDEF 753

Query: 722 GDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALN 781
              Y +      ++F  K RY+ ++G  L+YM G+DLS NEL+G IP+E+G+L K+RALN
Sbjct: 754 MLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALN 813

Query: 782 LS 783
           LS
Sbjct: 814 LS 815

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	783
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.960	0.779	0.402	2.1e-141
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.962	0.772	0.409	4.4e-141
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.766	0.673	0.439	2.1e-139
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.767	0.601	0.464	1.3e-137
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.730	0.528	0.453	1.3e-133
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.768	0.643	0.414	2.8e-125
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.761	0.656	0.384	6.4e-112
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.647	0.446	0.350	1.6e-72
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.636	0.498	0.351	3.7e-70
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.762	0.477	0.330	7.1e-70

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1332 (473.9 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
 Identities = 318/790 (40%), Positives = 443/790 (56%)

Query:     9 REYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFS 68
             R  ++ +L +W +D  SDCC W+ V C+  +G+V ++S     + D  NS     +LN S
Sbjct:    45 RTESESVLPTWTNDTTSDCCRWKGVACNRVSGRVTEISFGGLSLKD--NS-----LLNLS 97

Query:    69 LFLPFQELQILDLSGNYFDG-WNENKDYDXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXX 127
             L  PF++++ L+LS +   G +++ + Y                      +         
Sbjct:    98 LLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATS 157

Query:   128 XXXXXXXXXRIGGLNPSQGXXXXXXXXXXXXSWNGISSGATRLGLGNLTNLEVLDLSANR 187
                       + G  P++             S N  +       L +L  L+ LDLS N 
Sbjct:   158 LTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNE 217

Query:   188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
              SGS+     F          +LL  S++S GICEL N+ ELDL +N L G LP CL+ L
Sbjct:   218 FSGSMELQGKFCT--------DLLF-SIQS-GICELNNMQELDLSQNKLVGHLPSCLTSL 267

Query:   248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL-LLKV 306
              GL+VLD+S N L+G +PS + +L SLEYL+L DN+F+G F    L N SNL VL L   
Sbjct:   268 TGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSK 327

Query:   307 SSNLRLKTEN-WIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLM 365
             SS+L++ +E+ W P FQL V+ L +CN++ +P FLLHQ D + +DLS N + G  P+WL+
Sbjct:   328 SSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLL 387

Query:   366 QNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI 425
              NNTKL+VL L NN F+   Q+PK  H+LL  LD+S N+   + P+N+G +   L Y++ 
Sbjct:   388 ANNTKLKVLLLQNNLFTSF-QIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNT 445

Query:   426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP 485
             SKNNF+ N+P S+G M  +  +DLSRN F G+L  + V  C S+  L +S N   G IFP
Sbjct:   446 SKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFP 505

Query:   486 TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 545
                N T +  L++ NN FTGKI  GL +   L +LD+SNN L+G IP WIG    L  LL
Sbjct:   506 ESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALL 565

Query:   546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPST 605
             +S N L+G+IP+ + N   LQLLDLS N L G I    +  + + L LQ+N LSG IP T
Sbjct:   566 ISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDT 625

Query:   606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665
             L  + E+L  DLR+N+F G+IP+ IN  + + +LLLRGN   GQIP  LC L  + +LDL
Sbjct:   626 LLANVEIL--DLRNNRFSGKIPEFINIQN-ISILLLRGNNFTGQIPHQLCGLSNIQLLDL 682

Query:   666 SHNKLNGSIPSCFVNMLFW--REGNGDLYGSGLYI---YFQLGGLHSI-------GTYYN 713
             S+N+LNG+IPSC  N  F   +E     Y  G+      F    LH         G Y+ 
Sbjct:   683 SNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFK 742

Query:   714 STLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGE 773
             S L L     DY    Q  +++F TK+RY+ Y G NL  + G+DLS NEL+GEIP E G 
Sbjct:   743 SLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGG 801

Query:   774 LPKVRALNLS 783
             L ++RALNLS
Sbjct:   802 LLELRALNLS 811

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1330 (473.2 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
 Identities = 320/781 (40%), Positives = 452/781 (57%)

Query:    13 DEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLP 72
             D +L +W +D  S+CC WE + C+ T+G++I+LS+      +F  SS    +LN SL  P
Sbjct:    52 DSVLPTWTNDTKSNCCRWEGLKCNQTSGRIIELSIG---QTNFKESS----LLNLSLLHP 104

Query:    73 FQELQILDLSG---NYFDG-WNENKDYDXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXX 128
             F+EL+ L+LSG   N F+G +++ + Y+                     +          
Sbjct:   105 FEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSL 164

Query:   129 XXXXXXXXRIGGLNPSQGXXXXXXXXXXXXSWNGISSGATRLGLGNLTNLEVLDLSANRI 188
                      IGG  P +             S +G +         +L  L+ LDLSAN  
Sbjct:   165 TTLFIQSNYIGGPLPIKELKNLTKLELLDLSRSGYNGSIPEFT--HLEKLKALDLSANDF 222

Query:   189 SG--SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSD 246
             S    L EL    NL+VLG+  N L+G +  +  CE+KNL +LDL  N  EGQLP CL +
Sbjct:   223 SSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGN 282

Query:   247 LIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKV 306
             L  L+VLD+S N LSGNLP+   +L SLEYL+LSDNNF+G F L+ L N + L+V  L  
Sbjct:   283 LNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSS 342

Query:   307 SSN-LRLKTE-NWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL 364
             +S  L+++TE NW+P FQL V  LP C+L  IP+FL++Q + + +DLSSN+L G+ PTWL
Sbjct:   343 TSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWL 402

Query:   365 MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID 424
             ++NN +L+VL+L NNSF+ I Q+P + H L + LD S N++TG+LP N+G V+ +L++++
Sbjct:   403 LENNPELKVLQLKNNSFT-IFQIPTIVHKL-QVLDFSANDITGVLPDNIGHVLPRLLHMN 460

Query:   425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF 484
              S N F+GN+P S+GEM ++  LDLS N FSG+L  + +  C SL  L +S N+F G I 
Sbjct:   461 GSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPIL 520

Query:   485 PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG-NFSYLDV 543
             P    LT L  L + NN FTG+I  GL     L + D SNN L+G I   I  + S+L +
Sbjct:   521 PIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIM 580

Query:   544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQI 602
             LL+S N LEG +P  +     L  LDLS N L G + SS+ N    + ++L NN+ +G +
Sbjct:   581 LLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPL 640

Query:   603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGI 662
             P TL  +  +L  DLR+NK  G IP  +N   ++  LLLRGN L G IP  LC L  + +
Sbjct:   641 PVTLLENAYIL--DLRNNKLSGSIPQFVNT-GKMITLLLRGNNLTGSIPRKLCDLTSIRL 697

Query:   663 LDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFG 722
             LDLS NKLNG IP C +N L    G G +  SG       G    +  +Y ST  +  F 
Sbjct:   698 LDLSDNKLNGVIPPC-LNHLSTELGEG-IGLSGFSQEISFGDSLQM-EFYRSTFLVDEFM 754

Query:   723 DDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNL 782
               Y +      ++F  K RY+ ++G  L+YM G+DLS NEL+G IP+E+G+L K+RALNL
Sbjct:   755 LYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNL 814

Query:   783 S 783
             S
Sbjct:   815 S 815

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1181 (420.8 bits), Expect = 2.1e-139, Sum P(3) = 2.1e-139
 Identities = 272/619 (43%), Positives = 370/619 (59%)

Query:   174 NLTNLEVLDLSANRISGSLT--ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
             NLT+LEVLDL  N+ SG L   EL   RNL+ L + NN  +GS++ +GIC L+ L EL L
Sbjct:   126 NLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRL 185

Query:   232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
               N  EG++P C S    L+VLD+S NHLSG +P  I++  S+EYL+L DN+F+G F L 
Sbjct:   186 SRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLG 245

Query:   292 LLTNHSNLEVLLLKVSSNLRLKTENWIP---TFQLKVLQLPNCNLKVIPSFLLHQYDFKF 348
             L+T  + L+V  L   S +    E  +      QL  + L +CNL  IP FL +Q + + 
Sbjct:   246 LITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRV 305

Query:   349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGM 408
             +DLS+N L G FPTWL++NNT+L+ L L NNSF   L LP+    L + LD+S NN    
Sbjct:   306 IDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRRL-QILDLSVNNFNNQ 363

Query:   409 LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCAS 468
             LP+++G+++  L ++++S N F GN+P S+  M+ +  +DLS N FSG L       C S
Sbjct:   364 LPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYS 423

Query:   469 LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS 528
             L +L +S N F G I     + T L  L + NN FTGKI   LLN   L V+D+SNNLL+
Sbjct:   424 LSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLT 483

Query:   529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA--SSLNLS 586
             G IP W+GNF +L+VL +S N L+G IP  + N   L LLDLS N L GS+   SS +  
Sbjct:   484 GTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYG 542

Query:   587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYL 646
              I+ L+  NN L+G IP TL+    LL  DLR+NK  G IP    +   + V+LLR N L
Sbjct:   543 YILDLH--NNNLTGSIPDTLWYGLRLL--DLRNNKLSGNIP-LFRSTPSISVVLLRENNL 597

Query:   647 QGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLH 706
              G+IP+ LC L  + +LD +HN+LN SIPSC  N+ F   G+ +   S  Y    L    
Sbjct:   598 TGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNA-DSDWYPASLLSNFM 656

Query:   707 SIGT--YYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELT 764
              I T  YY S +    F  DY ++    +V+F  K RY+ Y    LN M G+DLS NEL+
Sbjct:   657 EIYTEVYYESLIVSDRFSLDY-SVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELS 715

Query:   765 GEIPSEIGELPKVRALNLS 783
             G IP E+G+L +VR+LNLS
Sbjct:   716 GNIPEELGDLKRVRSLNLS 734

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1257 (447.5 bits), Expect = 1.3e-137, Sum P(3) = 1.3e-137
 Identities = 292/629 (46%), Positives = 381/629 (60%)

Query:   172 LGNLTNLEVLDLSANRISGSLTELAPF--RNLKVLGMRNNLLNGSVESKG---------- 219
             L +LTN+E+LDLS NR +GS+   A F  R LK L + +N  + SVE +G          
Sbjct:   194 LRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSG 253

Query:   220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
              C  KN+ EL L  N L GQ P CL+ L GL+VLD+S N L+GN+PS +ANL SLEYL+L
Sbjct:   254 TCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSL 313

Query:   280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSN-LRLKTE-NWIPTFQLKVLQLPNCNLKVIP 337
               NNF+G F L LL N S L+VL L   SN L ++ E +W P FQL V+ L +CNL+ +P
Sbjct:   314 FGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVP 373

Query:   338 SFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRH 397
              FLLHQ D   +DLS N++ GNFP+WL++NNTKLEVL L NNSF+   QLPK  H+LL  
Sbjct:   374 HFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSF-QLPKSAHNLL-F 431

Query:   398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
             L++S N    +  QN G ++  L+ ++++ N F+GN+P S+  MK +  LDLS N+F G 
Sbjct:   432 LNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGK 491

Query:   458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL 517
             L    +  C +L  L +S N   G +FP   N T+L  + + NN FTG I  G  +   L
Sbjct:   492 LPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSL 551

Query:   518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG 577
              VLDISNN L+G IP WIG    L  L +S N LEG IP  + N   LQLLDLS NRL G
Sbjct:   552 NVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSG 611

Query:   578 SIASSLNLSSIMH---LYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634
              I    ++SSI H   L LQNN LSG IP TL  +  ++ LDLR+N+  G +P+ IN  +
Sbjct:   612 DIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFINTQN 667

Query:   635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGS 694
              + +LLLRGN   GQIP   C L  + +LDLS+NK NGSIPSC  N  F      D Y  
Sbjct:   668 -ISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRY 726

Query:   695 GLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMS 754
              +   F   G      Y+ S L +  F     T  Q  +++F TK+RY+ Y G NL  + 
Sbjct:   727 DVPSRF---GTAKDPVYFESLLMIDEFNMVNETNSQ-TKIEFATKHRYDAYMGGNLKLLF 782

Query:   755 GIDLSYNELTGEIPSEIGELPKVRALNLS 783
             G+DLS NEL+GEIP E+G L ++ ALNLS
Sbjct:   783 GMDLSENELSGEIPVELGGLVELEALNLS 811

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
 Identities = 270/596 (45%), Positives = 365/596 (61%)

Query:   200 NLKVLGMRNNLLNGSVESK-GICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFN 258
             +L+VL  + N L+ + E   GIC L  L ELDL  N L   LP+CL +L  L+ LD+S N
Sbjct:   333 SLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNN 391

Query:   259 HLSGNLPSVIANLTS-LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN---LRLKT 314
              L+GNL S ++ L S LEYL+L DNNF G F  + L N + L V   K+SS    ++++T
Sbjct:   392 QLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVF--KLSSKVGVIQVQT 449

Query:   315 EN-WIPTFQLKVLQLPNCNL-KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLE 372
             E+ W P FQLK+L L NC+L   +  FL+HQ D  F+DLS NKL G FPTWL++NNT+L+
Sbjct:   450 ESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQ 509

Query:   373 VLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG 432
              + LS NS +  LQLP + H L + LDIS+N +   + +++G+V   L +++ S N+F+G
Sbjct:   510 TILLSGNSLTK-LQLPILVHGL-QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQG 567

Query:   433 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQ 492
              IP SIGEMK L +LD+S N   G L    +  C SL  L +S N   G IF  + NLT 
Sbjct:   568 TIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTG 627

Query:   493 LRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE 552
             L  L+L  N+FTG ++ GLL S  L +LDIS+N  SG +P WIG  S L  L MS N L+
Sbjct:   628 LVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLK 687

Query:   553 GNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTEL 612
             G  P  +     ++++D+S N   GSI  ++N  S+  L LQNN  +G +P  LF++  L
Sbjct:   688 GPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGL 746

Query:   613 LTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672
               LDLR+N F G+I + I+  S+LR+LLLR N  Q  IP  +CQL ++G+LDLSHN+  G
Sbjct:   747 EVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRG 806

Query:   673 SIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIG-TYYNSTLDLWLFGDDYIT---L 728
              IPSCF  M F  E N D   S L   F    +  +    Y S L+L    DD +     
Sbjct:   807 PIPSCFSKMSFGAEQN-DRTMS-LVADFDFSYITFLPHCQYGSHLNL----DDGVRNGYQ 860

Query:   729 PQRARV-QFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             P+ A V  F+TK+RYE Y G  L YM G+DLS NEL+GEIP EIG+L  +R+LNLS
Sbjct:   861 PKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLS 916

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
 Identities = 258/622 (41%), Positives = 354/622 (56%)

Query:   171 GLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
             GL +LTNLE+LDL AN+++GS+ EL   + LK L + +N  + S+E + +  L NL  L 
Sbjct:   168 GLKDLTNLELLDLRANKLNGSMQELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLG 227

Query:   231 LGENNLEGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
             L +N+++G +P      L  L+ LD+  NH  G +P  + +L  L  L LS N   G+ P
Sbjct:   228 LAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLP 287

Query:   290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF-QLK-VLQLPNCNLKVIPSFLLHQYDFK 347
              S  +  S LE L L  ++     + N +     LK V+ L  C+L+ IPSFLL+Q   +
Sbjct:   288 SSFSSLES-LEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLR 346

Query:   348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG 407
              +DLSSN L GN PTWL+ NN +LEVL+L NNSF+ I  +P + H+L +  D S NN+ G
Sbjct:   347 LVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHNL-QIFDFSANNI-G 403

Query:   408 MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
               P  M   +  L+ ++ S N F+G  P SIGEMK +  LDLS N FSG L  + V  C 
Sbjct:   404 KFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCV 463

Query:   468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527
             S+ +L +S N F G   P   N   L  L + NN FTG I  GL NS  L +LD+SNN L
Sbjct:   464 SIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGL 523

Query:   528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSS 587
             SG IP W+  F YLD +L+S N LEG IP  +     L  LDLS N+  G++ S ++   
Sbjct:   524 SGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSEL 583

Query:   588 IMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
              ++++L NN  +G IP TL +S ++L  DLR+NK  G IP Q ++   + +LLL+GN L 
Sbjct:   584 GIYMFLHNNNFTGPIPDTLLKSVQIL--DLRNNKLSGSIP-QFDDTQSINILLLKGNNLT 640

Query:   648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHS 707
             G IP  LC L  + +LDLS NKLNG IPSC  N+ F R    D     +   F    L  
Sbjct:   641 GSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQE-DAMALNIPPSFLQTSLEM 699

Query:   708 IGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSN------LNYMSGIDLSYN 761
                 Y ST  +     D  T  Q   ++F  K RY+ Y+G +      L  M G+DLS N
Sbjct:   700 --ELYKSTFLVDKIEVDRSTY-QETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNN 756

Query:   762 ELTGEIPSEIGELPKVRALNLS 783
             EL+G IP+E+G+L K+R LNLS
Sbjct:   757 ELSGVIPTELGDLLKLRTLNLS 778

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 6.4e-112, Sum P(3) = 6.4e-112
 Identities = 241/626 (38%), Positives = 353/626 (56%)

Query:   172 LGNLTNLEVLDLSANRISGSLT--ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229
             L NLTNLE+LDLS NRI GS+   E    + LK L + +N +  S+E +  CE+KNL EL
Sbjct:   166 LKNLTNLELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQEL 225

Query:   230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
             DL   N  GQLP C  +L  L+ LD+S N L+GN+P   ++L SLEYL+LSDN+F+G F 
Sbjct:   226 DLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFS 285

Query:   290 LSLLTNHSNLEVLLLKVSSNL-RLKTEN-WIPTFQLKVLQLPNCNLKVIPSFLLHQYDFK 347
             L+ LTN + L+V +     ++ ++K E+ W P FQL VL L  C+L+ IP+FL++Q +  
Sbjct:   286 LNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLH 345

Query:   348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG 407
              +DLS N++ G  PTWL++NN +LEVL+L NNSF+ I Q+P   H+L + LD S NN+ G
Sbjct:   346 VVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHNL-QVLDFSENNIGG 403

Query:   408 MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
             + P N G V+  L++++ S N F+GN P S+GEM  +  LDLS N  SG+L  + V  C 
Sbjct:   404 LFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCF 463

Query:   468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527
             SL  L +S N F GH  P   N T L  L + NN FTGKI  GLL    L +LD+SNN L
Sbjct:   464 SLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFL 523

Query:   528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIP--VQINNFRQLQLLDLSENRLFGSIASSLNL 585
              G +P  +  F YL+ L +S N L G +P  V ++N     +L L  N   G I  +  L
Sbjct:   524 EGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDN-----VLFLHNNNFTGPIPDTF-L 577

Query:   586 SSIMHLYLQNNALSGQIPSTLFRSTELLT-LDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
              SI  L L+NN LSG IP   F  T+ ++ L LR N   G IP  +   S++R+L L  N
Sbjct:   578 GSIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDN 635

Query:   645 YLQGQIPIALCQLQKLGIL---DLSHNKLNGSIPSCFVNMLFWREGNG-DLYGSGLYIYF 700
              L G IP     L   G+    ++++  +  ++ S ++   F++     + +      YF
Sbjct:   636 KLNGFIPSCFNNLS-FGLARKEEITNYYVAVALESFYLG--FYKSTFVVENFRLDYSNYF 692

Query:   701 QLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLN---YMSGID 757
             ++    +    Y+S +  + F +   TL     +  ++ N       + L     +  ++
Sbjct:   693 EIDVKFATKQRYDSYIGAFQFSEG--TLNSMYGLD-LSSNELSGVIPAELGDLFKLRALN 749

Query:   758 LSYNELTGEIPSEIGELPKVRALNLS 783
             LS+N L+  IP    +L  + +L+LS
Sbjct:   750 LSHNFLSSHIPDSFSKLQDIESLDLS 775

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.6e-72, Sum P(3) = 1.6e-72
 Identities = 183/522 (35%), Positives = 275/522 (52%)

Query:   160 WNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKG 219
             +N +S G     + NLT+LEV +++ NR+SG +    P  +L+ L + +N  +G + S G
Sbjct:   125 YNSLS-GKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLP-SSLQFLDISSNTFSGQIPS-G 181

Query:   220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
             +  L  L  L+L  N L G++P  L +L  L+ L + FN L G LPS I+N +SL +L+ 
Sbjct:   182 LANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSA 241

Query:   280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLP-NCNLKVI-P 337
             S+N   G  P +       LEVL L  ++       +      L ++QL  N    ++ P
Sbjct:   242 SENEIGGVIPAAYGAL-PKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRP 300

Query:   338 SFLLH-QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH-DLL 395
                 + +   + LDL  N++ G FP WL  N   L+ L +S N FSG +  P + +   L
Sbjct:   301 ETTANCRTGLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIP-PDIGNLKRL 358

Query:   396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 455
               L ++NN+LTG +P  +      L  +D   N+ +G IP  +G MK L +L L RN FS
Sbjct:   359 EELKLANNSLTGEIPVEIK-QCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFS 417

Query:   456 GDLSATSVIRCASLEYLDVSENNFYGHIFPT-YMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
             G + + S++    LE L++ ENN  G  FP   M LT L  L L  N F+G +   + N 
Sbjct:   418 GYVPS-SMVNLQQLERLNLGENNLNGS-FPVELMALTSLSELDLSGNRFSGAVPVSISNL 475

Query:   515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574
               L  L++S N  SG IP  +GN   L  L +SK ++ G +PV+++    +Q++ L  N 
Sbjct:   476 SNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNN 535

Query:   575 LFGSIASSLN-LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNH 633
               G +    + L S+ ++ L +N+ SG+IP T      L++L L DN   G IP +I N 
Sbjct:   536 FSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNC 595

Query:   634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
             S L VL LR N L G IP  L +L +L +LDL  N L+G IP
Sbjct:   596 SALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIP 637

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 3.7e-70, Sum P(3) = 3.7e-70
 Identities = 185/527 (35%), Positives = 270/527 (51%)

Query:   160 WNGISSGATRLGLGNLTNLEVLDLSANRISGSLTE-LAPFRNLKVLGMRNNLLNGSVESK 218
             W G+S  AT       +N+  +DLS+  + G     L    +L  L + NN +NGS+ + 
Sbjct:    56 WLGVSCDAT-------SNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSAD 108

Query:   219 GICELKNLTELDLGENNLEGQLPWCLS-DLIGLKVLDISFNHLSGNLPSVIANLTSLEYL 277
                   NL  LDL EN L G +P  L  +L  LK L+IS N+LS  +PS       LE L
Sbjct:   109 DFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESL 168

Query:   278 ALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT-----FQLKVLQLPNCN 332
              L+ N   G  P SL  N + L+ L  K++ NL   ++  IP+      +L+VL L  CN
Sbjct:   169 NLAGNFLSGTIPASL-GNVTTLKEL--KLAYNLFSPSQ--IPSQLGNLTELQVLWLAGCN 223

Query:   333 LK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVK 391
             L   IP  L        LDL+ N+L G+ P+W+ Q  T +E + L NNSFSG  +LP+  
Sbjct:   224 LVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKT-VEQIELFNNSFSG--ELPESM 280

Query:   392 HDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449
              ++  L+  D S N LTG +P N+ ++   L  +++ +N  EG +P SI   K L  L L
Sbjct:   281 GNMTTLKRFDASMNKLTGKIPDNLNLL--NLESLNLFENMLEGPLPESITRSKTLSELKL 338

Query:   450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA 509
               N+ +G L +      + L+Y+D+S N F G I        +L +L L +N F+G+I  
Sbjct:   339 FNNRLTGVLPSQLGAN-SPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDNSFSGEISN 397

Query:   510 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLD 569
              L     L  + +SNN LSG IP        L +L +S N   G+IP  I   + L  L 
Sbjct:   398 NLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLR 457

Query:   570 LSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPD 628
             +S+NR  GSI + + +L+ I+ +    N  SG+IP +L +  +L  LDL  N+  G IP 
Sbjct:   458 ISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPR 517

Query:   629 QINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
             ++     L  L L  N+L G+IP  +  L  L  LDLS N+ +G IP
Sbjct:   518 ELRGWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIP 564

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 7.1e-70, Sum P(2) = 7.1e-70
 Identities = 208/629 (33%), Positives = 319/629 (50%)

Query:   172 LGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
             LGN ++L V   + N ++G++  EL    NL++L + NN L G + S+ + E+  L  L 
Sbjct:   211 LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ-LGEMSQLQYLS 269

Query:   231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPL 290
             L  N L+G +P  L+DL  L+ LD+S N+L+G +P    N++ L  L L++N+  G  P 
Sbjct:   270 LMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPK 329

Query:   291 SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQ-LKVLQLPNCNLK-VIPSFLLHQYDFKF 348
             S+ +N++NLE L+L   + L  +    +   Q LK L L N +L   IP  L    +   
Sbjct:   330 SICSNNTNLEQLVLS-GTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTD 388

Query:   349 LDLSSNKLVGNF-PTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS---NNN 404
             L L +N L G   P+  + N T L+ L L +N+  G  +LPK +   LR L++     N 
Sbjct:   389 LYLHNNTLEGTLSPS--ISNLTNLQWLVLYHNNLEG--KLPK-EISALRKLEVLFLYENR 443

Query:   405 LTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI 464
              +G +PQ +G     L  ID+  N+FEG IP SIG +KEL LL L +N+  G L A S+ 
Sbjct:   444 FSGEIPQEIGNCTS-LKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPA-SLG 501

Query:   465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
              C  L  LD+++N   G I  ++  L  L  L L NN   G +   L++   L  +++S+
Sbjct:   502 NCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSH 561

Query:   525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
             N L+G I    G+ SYL    ++ N  E  IP+++ N + L  L L +N+L G I  +L 
Sbjct:   562 NRLNGTIHPLCGSSSYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLG 620

Query:   585 -LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRG 643
              +  +  L + +NAL+G IP  L    +L  +DL +N   G IP  +   S+L  L L  
Sbjct:   621 KIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSS 680

Query:   644 NYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGD---LYGSGLYIYF 700
             N     +P  L    KL +L L  N LNGSIP    N+      N D     GS      
Sbjct:   681 NQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMG 740

Query:   701 QLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGS------NLNYMS 754
             +L  L+ +    NS     L G+  + + Q   +Q      Y  + G        L+ + 
Sbjct:   741 KLSKLYELRLSRNS-----LTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLE 795

Query:   755 GIDLSYNELTGEIPSEIGELPKVRALNLS 783
              +DLS+N+LTGE+P  +G++  +  LN+S
Sbjct:   796 TLDLSHNQLTGEVPGSVGDMKSLGYLNVS 824

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	783
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  226 bits (577), Expect = 2e-62
 Identities = 196/587 (33%), Positives = 295/587 (50%), Gaps = 37/587 (6%)

Query: 1   SFFLSISDREYADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSD 60
           SF  SI+D     + L++W  +  +D C W+ +TC+ ++  V   S+D +      N S 
Sbjct: 36  SFKSSIND---PLKYLSNW--NSSADVCLWQGITCNNSSRVV---SIDLSGK----NISG 83

Query: 61  GFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLP 120
                 F L  P+  +Q ++LS N   G       D   +S  L+ LNL+ NNF  S+  
Sbjct: 84  KISSAIFRL--PY--IQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Query: 121 YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEV 180
              ++ +L TL+L  N + G  P   + +  +LK L+L  N +  G     L NLT+LE 
Sbjct: 137 --GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEF 192

Query: 181 LDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ 239
           L L++N++ G +  EL   ++LK + +  N L+G +  + I  L +L  LDL  NNL G 
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP 251

Query: 240 LPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL 299
           +P  L +L  L+ L +  N LSG +P  I +L  L  L LSDN+  GE P  L+    NL
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNL 310

Query: 300 EVLLLKVSSNLRLKTENWIPTF-QLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLV 357
           E+L L  S+N   K    + +  +L+VLQL +      IP  L    +   LDLS+N L 
Sbjct: 311 EILHL-FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGI 415
           G  P  L  ++  L  L L +NS  G  ++PK       LR + + +N+ +G LP     
Sbjct: 370 GEIPEGLC-SSGNLFKLILFSNSLEG--EIPKSLGACRSLRRVRLQDNSFSGELPSEF-T 425

Query: 416 VIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS 475
            +  + ++DIS NN +G I     +M  L +L L+RNKF G L  +       LE LD+S
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLS 483

Query: 476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI 535
            N F G +     +L++L  L L  N  +G+I   L +   LV LD+S+N LSG IP   
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 536 GNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
                L  L +S+N L G IP  + N   L  +++S N L GS+ S+
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (545), Expect = 4e-58
 Identities = 183/601 (30%), Positives = 286/601 (47%), Gaps = 67/601 (11%)

Query: 85  YFDGWNENKDY-----DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIG 139
           Y   WN + D       +  +S ++  ++L+  N +  +   +  L  + T+NL  N++ 
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 140 GLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPF 198
           G  P        +L+ LNLS N  +    R   G++ NLE LDLS N +SG +  ++  F
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSF 163

Query: 199 RNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFN 258
            +LKVL +  N+L G + +  +  L +L  L L  N L GQ+P  L  +  LK + + +N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 259 HLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWI 318
           +LSG +P  I  LTSL +L L  NN  G  P SL  N  NL+                  
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQ------------------ 263

Query: 319 PTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN 378
                                        +L L  NKL G  P  +  +  KL  L LS+
Sbjct: 264 -----------------------------YLFLYQNKLSGPIPPSIF-SLQKLISLDLSD 293

Query: 379 NSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
           NS SG +    ++   L  L + +NN TG +P  +   + +L  + +  N F G IP ++
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNL 352

Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCAS--LEYLDVSENNFYGHIFPTYMNLTQLRWL 496
           G+   L +LDLS N  +G++       C+S  L  L +  N+  G I  +      LR +
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEG---LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 497 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 556
            L++N F+G++ +       +  LDISNN L G I     +   L +L +++N   G +P
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 557 VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
                 ++L+ LDLS N+  G++   L +LS +M L L  N LSG+IP  L    +L++L
Sbjct: 470 -DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
           DL  N+  G+IP   +    L  L L  N L G+IP  L  ++ L  +++SHN L+GS+P
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Query: 676 S 676
           S
Sbjct: 589 S 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  181 bits (462), Expect = 2e-47
 Identities = 150/458 (32%), Positives = 225/458 (49%), Gaps = 32/458 (6%)

Query: 226 LTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT-SLEYLALSDNNF 284
           +  +DL   N+ G++   +  L  ++ +++S N LSG +P  I   + SL YL LS+NNF
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY 344
            G  P   +    NLE L L   SN  L  E                    IP+ +    
Sbjct: 131 TGSIPRGSI---PNLETLDL---SNNMLSGE--------------------IPNDIGSFS 164

Query: 345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNN 404
             K LDL  N LVG  P  L  N T LE L L++N   G +     +   L+ + +  NN
Sbjct: 165 SLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 405 LTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI 464
           L+G +P  +G +   L ++D+  NN  G IP S+G +K L  L L +NK SG +   S+ 
Sbjct: 224 LSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIF 281

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
               L  LD+S+N+  G I    + L  L  L+L +N+FTGKI   L +   L VL + +
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           N  SG IP  +G  + L VL +S N+L G IP  + +   L  L L  N L G I  SL 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 585 L-SSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRG 643
              S+  + LQ+N+ SG++PS   +   +  LD+ +N   GRI  +  +   L++L L  
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 644 NYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
           N   G +P      ++L  LDLS N+ +G++P    ++
Sbjct: 462 NKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSL 498

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  179 bits (455), Expect = 1e-46
 Identities = 149/536 (27%), Positives = 235/536 (43%), Gaps = 77/536 (14%)

Query: 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309
           +  +D+S  ++SG + S I  L  ++ + LS+N   G  P  + T  S+L          
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL---------- 120

Query: 310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNT 369
                                                ++L+LS+N   G+ P   + N  
Sbjct: 121 -------------------------------------RYLNLSNNNFTGSIPRGSIPN-- 141

Query: 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN 429
            LE L LSNN  SG +         L+ LD+  N L G +P ++   +  L ++ ++ N 
Sbjct: 142 -LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQ 199

Query: 430 FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMN 489
             G IP  +G+MK L  + L  N  SG++    +    SL +LD+  NN  G I  +  N
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 549
           L  L++L+L  N  +G I   + +   L+ LD+S+N LSG IP  +     L++L +  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 550 HLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFR 608
           +  G IPV + +  +LQ+L L  N+  G I  +L   +++  L L  N L+G+IP  L  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
           S  L  L L  N   G IP  +     LR + L+ N   G++P    +L  +  LD+S+N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 669 KLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGL-HSIGTYYNSTLDLWLFGDDYIT 727
            L G I S   +M         L    L      GGL  S G+     LDL         
Sbjct: 439 NLQGRINSRKWDM-------PSLQMLSLARNKFFGGLPDSFGSKRLENLDL--------- 482

Query: 728 LPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
              R +       +       +L+ +  + LS N+L+GEIP E+    K+ +L+LS
Sbjct: 483 --SRNQFSGAVPRKL-----GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 4e-19
 Identities = 86/259 (33%), Positives = 124/259 (47%), Gaps = 35/259 (13%)

Query: 534 WIG----NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNL--SS 587
           W G    N S +  + +S  ++ G I   I     +Q ++LS N+L G I   +    SS
Sbjct: 60  WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119

Query: 588 IMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
           + +L L NN  +G IP     + E  TLDL +N   G IP+ I + S L+VL L GN L 
Sbjct: 120 LRYLNLSNNNFTGSIPRGSIPNLE--TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM--LFW-REGNGDLYGSGLYIYFQLGG 704
           G+IP +L  L  L  L L+ N+L G IP     M  L W   G  +L G    I +++GG
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE---IPYEIGG 234

Query: 705 LHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELT 764
           L S+     + LDL ++ +    +P                N  NL Y+    L  N+L+
Sbjct: 235 LTSL-----NHLDL-VYNNLTGPIPS------------SLGNLKNLQYLF---LYQNKLS 273

Query: 765 GEIPSEIGELPKVRALNLS 783
           G IP  I  L K+ +L+LS
Sbjct: 274 GPIPPSIFSLQKLISLDLS 292

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.0 bits (187), Expect = 5e-14
 Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 7/167 (4%)

Query: 107 LNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRI-GGLNPSQGLANLRNLKALNLSWNGISS 165
           L+++ NN    +      + SL  L+L  N+  GGL  S G   L NL   +LS N  S 
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL---DLSRNQFS- 488

Query: 166 GATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELK 224
           GA    LG+L+ L  L LS N++SG +  EL+  + L  L + +N L+G + +    E+ 
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMP 547

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANL 271
            L++LDL +N L G++P  L ++  L  ++IS NHL G+LPS  A L
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
           L + N  L G IP  I    +L  + +S N + GNIP  + +   L++LDLS N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 580 ASSL-NLSSIMHLYLQNNALSGQIPSTL 606
             SL  L+S+  L L  N+LSG++P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 204 LGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGN 263
           LG+ N  L G + +  I +L++L  ++L  N++ G +P  L  +  L+VLD+S+N  +G+
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 264 LPSVIANLTSLEYLALSDNNFQGEFPLSL 292
           +P  +  LTSL  L L+ N+  G  P +L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.5 bits (149), Expect = 7e-10
 Identities = 86/267 (32%), Positives = 126/267 (47%), Gaps = 9/267 (3%)

Query: 97  SSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKAL 156
           +  +   L  L+LN N    S +  L  LT+LT+L+L  N I  + P  GL    NLK L
Sbjct: 88  NLLNLLPLPSLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLK-SNLKEL 145

Query: 157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVE 216
           +LS N I S  +   L NL NL+ LDLS N +S     L+   NL  L +  N +  S  
Sbjct: 146 DLSDNKIESLPS--PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI--SDL 201

Query: 217 SKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
              I  L  L ELDL  N++  +L   LS+L  L  L++S N+   +LP  I NL++LE 
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLET 259

Query: 277 LALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVI 336
           L LS+N       L  LTN   L++    +S+ L L     +    L  L L    L++ 
Sbjct: 260 LDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELK 319

Query: 337 PSFLLHQYD-FKFLDLSSNKLVGNFPT 362
            + +L   +     + SS + +    +
Sbjct: 320 LNSILLNNNILSNGETSSPEALSILES 346

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 23/115 (20%)

Query: 540 YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS 599
           ++D L +    L G IP  I+  R LQ ++LS N + G+I  SL                
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL---------------- 462

Query: 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIAL 654
           G I S       L  LDL  N F G IP+ +   + LR+L L GN L G++P AL
Sbjct: 463 GSITS-------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 32/86 (37%), Positives = 47/86 (54%)

Query: 591 LYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI 650
           L L N  L G IP+ + +   L +++L  N   G IP  + + + L VL L  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 651 PIALCQLQKLGILDLSHNKLNGSIPS 676
           P +L QL  L IL+L+ N L+G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
           L + N  L G +P ++   ++ L  I++S N+  GNIP S+G +  L +LDLS N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 458 LSATSVIRCASLEYLDVSENNFYGHI 483
           +   S+ +  SL  L+++ N+  G +
Sbjct: 482 IPE-SLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.4 bits (133), Expect = 5e-08
 Identities = 83/241 (34%), Positives = 121/241 (50%), Gaps = 33/241 (13%)

Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
           L NL  L  LDL+ NR+  +++EL    NL  L + NN +       G+    NL ELDL
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDL 147

Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
            +N +E  LP  L +L  LK LD+SFN LS +LP +++NL++L  L LS N         
Sbjct: 148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI------- 198

Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
                S+L   +  +S+              L+ L L N ++  + S L +  +   L+L
Sbjct: 199 -----SDLPPEIELLSA--------------LEELDLSNNSIIELLSSLSNLKNLSGLEL 239

Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
           S+NKL  + P  +  N + LE L LSNN  S I  L  + +  LR LD+S N+L+  LP 
Sbjct: 240 SNNKLE-DLPESI-GNLSNLETLDLSNNQISSISSLGSLTN--LRELDLSGNSLSNALPL 295

Query: 412 N 412
            
Sbjct: 296 I 296

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 11/88 (12%)

Query: 138 IGGLN-PSQGL--------ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRI 188
           I GL   +QGL        + LR+L+++NLS N I  G     LG++T+LEVLDLS N  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSF 478

Query: 189 SGSLTE-LAPFRNLKVLGMRNNLLNGSV 215
           +GS+ E L    +L++L +  N L+G V
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 51/182 (28%), Positives = 73/182 (40%), Gaps = 32/182 (17%)

Query: 152 NLKALNLSWNGISS-GATRLG--LGNLTNLEVLDLSANRISGSLTE-----LAPFRNLKV 203
            L+ L L  N +       L   L    +L+ L+L+ N I  +        L    NL+V
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 204 LGMRNNLLNGSVESKGICE----LKNLTELDLGENNLEGQLPWCLSDL--------IGLK 251
           L + NN L     +  + E    LK+L  L+LG+NNL        + L        I L 
Sbjct: 198 LDLNNNGLT-DEGASALAETLASLKSLEVLNLGDNNLTD---AGAAALASALLSPNISLL 253

Query: 252 VLDISFNHL----SGNLPSVIANLTSLEYLALSDNNF----QGEFPLSLLTNHSNLEVLL 303
            L +S N +    + +L  V+A   SL  L L  N F          SLL   + LE L 
Sbjct: 254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313

Query: 304 LK 305
           +K
Sbjct: 314 VK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 5/89 (5%)

Query: 374 LRLSNNSFSGIL--QLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFE 431
           L L N    G +   + K++H  L+ +++S N++ G +P ++G  I  L  +D+S N+F 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFN 479

Query: 432 GNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
           G+IP S+G++  L +L+L+ N  SG + A
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555
           L L N    G I   +     L  +++S N + G+IP  +G+ + L+VL +S N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSL 583
           P  +     L++L+L+ N L G + ++L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 26/85 (30%), Positives = 38/85 (44%)

Query: 472 LDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI 531
           L +      G I      L  L+ + L  N   G I   L +   L VLD+S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 532 PCWIGNFSYLDVLLMSKNHLEGNIP 556
           P  +G  + L +L ++ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 65/216 (30%), Positives = 97/216 (44%), Gaps = 7/216 (3%)

Query: 461 TSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520
            +++    L  LD++ N    +I    + LT L  L L NN+ T       L    L  L
Sbjct: 87  ENLLNLLPLPSLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145

Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580
           D+S+N +   +P  + N   L  L +S N L     +  N    L  LDLS N++     
Sbjct: 146 DLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPP 203

Query: 581 SSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLL 640
               LS++  L L NN++  ++ S+L     L  L+L +NK    +P+ I N S L  L 
Sbjct: 204 EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261

Query: 641 LRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
           L  N  Q     +L  L  L  LDLS N L+ ++P 
Sbjct: 262 LSNN--QISSISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 75/299 (25%), Positives = 112/299 (37%), Gaps = 41/299 (13%)

Query: 222 ELKNLTELDLGENNL-EGQLPWCLSDL---IGLKVLDISFNHLSGNLPSVIA------NL 271
           +L  L  L L  N L E       S L     LK L +S N        + +        
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 272 TSLEYLALSDNNFQGEFP--LSLLTNHSNLEVLLLKVSS----NLRLKTENWI-PTFQLK 324
             L+ L LSDN    +    L  L   S+L+ L L  +      LRL  +        L+
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 325 VLQLPNCNLKVIPSF-----LLHQYDFKFLDLSSNKLVGNFPTWL---MQNNTKLEVLRL 376
            L L    L+          L    D K L+L++N +       L   ++ N  LEVL L
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 377 SNNSFS--GILQLPKVKHDL--LRHLDISNNNLTGM----LPQNMGIVIQKLMYIDISKN 428
           +NN  +  G   L +    L  L  L++ +NNLT      L   +      L+ + +S N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

Query: 429 NFE----GNIPYSIGEMKELFLLDLSRNKFS--GDLSATSVIRC--ASLEYLDVSENNF 479
           +       ++   + E + L  LDL  NKF   G       +      LE L V +++F
Sbjct: 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 70  FLP-----FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           F+P      + LQ ++LSGN   G        S GS   L++L+L+YN+FN S+   L  
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 125 LTSLTTLNLYYNRIGGLNPS 144
           LTSL  LNL  N + G  P+
Sbjct: 489 LTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 82/299 (27%), Positives = 120/299 (40%), Gaps = 16/299 (5%)

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLL 303
            S L  L  LD+       +L      L  L   +L  N  +    +S L   +NL  L 
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 304 LKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTW 363
           L  ++   +     +    LK L L +  ++ +PS L +  + K LDLS N L       
Sbjct: 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PK 180

Query: 364 LMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLM 421
           L+ N + L  L LS N  S    LP     L  L  LD+SNN++  +L     +   K +
Sbjct: 181 LLSNLSNLNNLDLSGNKIS---DLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNL 234

Query: 422 YIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG 481
                 NN   ++P SIG +  L  LDLS N+ S   S +S+    +L  LD+S N+   
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSN 291

Query: 482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 540
            +      L  L    L N   T K     LNS  L+  +I +N  +          S 
Sbjct: 292 ALPLI--ALLLLLLELLLNLLLTLKALELKLNS-ILLNNNILSNGETSSPEALSILESL 347

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 9/200 (4%)

Query: 488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY-LDVLLM 546
           +NL  L  L L  N     I   LL    L  LD+ NN ++  IP  IG     L  L +
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDL 147

Query: 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTL 606
           S N +E ++P  + N   L+ LDLS N L        NLS++ +L L  N +S  +P  +
Sbjct: 148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEI 205

Query: 607 FRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666
              + L  LDL +N     +   ++N   L  L L  N     +P ++  L  L  LDLS
Sbjct: 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLS 263

Query: 667 HNKLNGSIPSCFVNMLFWRE 686
           +N++  S  S   ++   RE
Sbjct: 264 NNQI--SSISSLGSLTNLRE 281

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 25/60 (41%), Positives = 29/60 (48%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           NL  LDL  N L          L  LKVLD+S N+L+   P   + L SL  L LS NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 61/305 (20%), Positives = 96/305 (31%), Gaps = 65/305 (21%)

Query: 312 LKTENWIPTF----QLKVLQLPNCNL-----KVIPSFLLHQYDFKFLDLSSNKLVGNFPT 362
           LKTE           L+VL+L    L     K + S L  Q   K L LS N+       
Sbjct: 10  LKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG 69

Query: 363 WL-----MQNNTKLEVLRLSNNSFSGILQ--LPKVKHDL-LRHLDISNNNLTGMLPQNMG 414
                  +     L+ L LS+N+        L  +     L+ L ++NN L         
Sbjct: 70  LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR------ 123

Query: 415 IVIQKLMYIDISKNNFEGNIPYSIGEMKELFL----LDLSRNKFSGDLS---ATSVIRCA 467
                              +      +K+L      L L RN+  G      A ++    
Sbjct: 124 ------------------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165

Query: 468 SLEYLDVSENNFYG----HIFPTYMNLTQLRWLYLKNNHFT----GKIKAGLLNSHGLVV 519
            L+ L+++ N         +         L  L L NN  T      +   L +   L V
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 520 LDISNNLLSGHIPC-----WIGNFSYLDVLLMSKNHLEGNIPVQ----INNFRQLQLLDL 570
           L++ +N L+           +     L  L +S N +  +        +     L  LDL
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285

Query: 571 SENRL 575
             N+ 
Sbjct: 286 RGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 68  SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTS 127
            + L    L+ LDLS N               +   LK L+L++N+ +D     L+ L++
Sbjct: 134 LIGLLKSNLKELDLSDN-----KIESLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSN 187

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANR 187
           L  L+L  N+I  L P   L  L  L+ L+LS N I        L NL NL  L+LS N+
Sbjct: 188 LNNLDLSGNKISDLPPEIEL--LSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNK 243

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
           +      +    NL+ L + NN ++       +  L NL ELDL  N+L   LP
Sbjct: 244 LEDLPESIGNLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 326 LQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI 384
           L L N  L+  IP+ +      + ++LS N + GN P  L  + T LEVL LS NSF+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS 481

Query: 385 LQLPKVKHDLLRHLDISNNNLTGMLPQNMG 414
           +     +   LR L+++ N+L+G +P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 103 KLKILNLNYNNFNDSVLP--YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160
            LK L+L+ N    +V+P      L +L  L+L  N +  ++P +  + L +L++L+LS 
Sbjct: 1   NLKSLDLSNNRL--TVIPDGAFKGLPNLKVLDLSGNNLTSISP-EAFSGLPSLRSLDLSG 57

Query: 161 NGI 163
           N +
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNP 143
             L+ L+L+ N   D  LP L+ L +L TL+L  N+I  L+P
Sbjct: 1   TNLETLDLSNNQITD--LPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	783
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
PLN03150	623	hypothetical protein; Provisional	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
PLN03150	623	hypothetical protein; Provisional	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG4341	483	consensus F-box protein containing LRR [General fu	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
KOG4341	483	consensus F-box protein containing LRR [General fu	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.72
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.3
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.09
KOG4308	478	consensus LRR-containing protein [Function unknown	92.58
KOG4308	478	consensus LRR-containing protein [Function unknown	89.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.83
smart00370	26	LRR Leucine-rich repeats, outliers.	81.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.07
smart00370	26	LRR Leucine-rich repeats, outliers.	80.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	80.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.22

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.3e-63  Score=599.89  Aligned_cols=569  Identities=30%  Similarity=0.511  Sum_probs=353.8

Q ss_pred             cccccccC-CCCCCCCCcCCCCCCCCcccceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeC
Q 047035            3 FLSISDRE-YADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDL   81 (783)
Q Consensus         3 ~~~~~~~~-~~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L   81 (783)
                      +++.++.- .|.+.+++|+..  .|||.|.||+|+. .++|+.++++++.+        . + ..+..|..+++|++|+|
T Consensus        34 l~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~~-~~~v~~L~L~~~~i--------~-~-~~~~~~~~l~~L~~L~L  100 (968)
T PLN00113         34 LLSFKSSINDPLKYLSNWNSS--ADVCLWQGITCNN-SSRVVSIDLSGKNI--------S-G-KISSAIFRLPYIQTINL  100 (968)
T ss_pred             HHHHHHhCCCCcccCCCCCCC--CCCCcCcceecCC-CCcEEEEEecCCCc--------c-c-cCChHHhCCCCCCEEEC
Confidence            34444432 256778999653  6899999999985 56899999988764        1 1 11334556666666666


Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCC
Q 047035           82 SGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN  161 (783)
Q Consensus        82 s~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n  161 (783)
                      ++|.+.+.+|.   ..+..+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+.+..|. .++++++|        
T Consensus       101 s~n~~~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L--------  166 (968)
T PLN00113        101 SNNQLSGPIPD---DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSL--------  166 (968)
T ss_pred             CCCccCCcCCh---HHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCC--------
Confidence            66666554441   1123555566666665555544443  3345555555555555544442 34444444        


Q ss_pred             CCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccC
Q 047035          162 GISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL  240 (783)
Q Consensus       162 ~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  240 (783)
                                       ++|++++|.+.+..+ .++++++|++|++++|.+.+.+| ..++++++|++|++++|.+.+.+
T Consensus       167 -----------------~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        167 -----------------KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             -----------------CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcC
Confidence                             444444444433333 34444444444444444444444 44555555555555555555555


Q ss_pred             CccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCC
Q 047035          241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT  320 (783)
Q Consensus       241 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  320 (783)
                      |..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.                              
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------------------------  278 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP------------------------------  278 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch------------------------------
Confidence            55555555555555555555555555555555555555555555443332                              


Q ss_pred             ccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEc
Q 047035          321 FQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDI  400 (783)
Q Consensus       321 ~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  400 (783)
                                        .+..+++|++|++++|.+.+.+|.++. ++++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus       279 ------------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        279 ------------------SIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             ------------------hHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence                              222233344444444444444444332 3444444444444444332223345666777777


Q ss_pred             ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccc
Q 047035          401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY  480 (783)
Q Consensus       401 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  480 (783)
                      ++|.+.+.+|..+. .+++|+.|++++|++.+.+|.++..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|+++
T Consensus       340 ~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        340 WSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             cCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEee
Confidence            77777777777664 5677888888888887777777777777788888877777666654 456777777777777777


Q ss_pred             ccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc
Q 047035          481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN  560 (783)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  560 (783)
                      +..|..+..++.|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..++ .++|+.|++++|++++.+|..+.
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~  496 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLG  496 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhh
Confidence            77777777777777777777777777777677777777777777777777776553 46777777777777777777777


Q ss_pred             CCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEE
Q 047035          561 NFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVL  639 (783)
Q Consensus       561 ~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  639 (783)
                      ++++|+.|++++|++.+.+|..+ .+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            77777777777777777777666 67777777777777777777777777777777777777777777777777777777


Q ss_pred             eCcCCcccccCCcchhCCCCCCEEecCCCc
Q 047035          640 LLRGNYLQGQIPIALCQLQKLGILDLSHNK  669 (783)
Q Consensus       640 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  669 (783)
                      ++++|++.|.+|.. +.+..+....+.+|+
T Consensus       577 ~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        577 NISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             eccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            77777777777743 344444445556665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.1e-59  Score=564.44  Aligned_cols=520  Identities=33%  Similarity=0.508  Sum_probs=431.3

Q ss_pred             CCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEE
Q 047035          102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL  181 (783)
Q Consensus       102 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  181 (783)
                      .+++.|+|++|.+.+.++..+..+++|++|+|++|++.+.+|...+.++++|++|++++|.+.+..+   .+.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEE
Confidence            4677788887777777777778888888888888887776675445577777777777777765443   2456777777


Q ss_pred             ECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccC
Q 047035          182 DLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL  260 (783)
Q Consensus       182 ~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  260 (783)
                      ++++|.+.+..+ .++.+++|++|++++|.+.+.+| ..++++++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            777777765555 56666666666666666665555 4566666666666666666666666666666666666666666


Q ss_pred             CccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhh
Q 047035          261 SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFL  340 (783)
Q Consensus       261 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l  340 (783)
                      .+.+|..++++++|++|++++|.+.+.                                                +|..+
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~------------------------------------------------~p~~l  256 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGP------------------------------------------------IPSSL  256 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccc------------------------------------------------cChhH
Confidence            666666666666666666666655443                                                34455


Q ss_pred             hcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCc
Q 047035          341 LHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKL  420 (783)
Q Consensus       341 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L  420 (783)
                      ..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+. .+++|
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L  334 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRL  334 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCC
Confidence            6667788888888888888888876 889999999999999887555567899999999999999988888775 68999


Q ss_pred             eEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccC
Q 047035          421 MYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN  500 (783)
Q Consensus       421 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  500 (783)
                      +.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ ..+++|+.|++++|++.+.+|..+..+++|+.|++++
T Consensus       335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence            999999999999999999999999999999999998888754 5788999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccc
Q 047035          501 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA  580 (783)
Q Consensus       501 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  580 (783)
                      |.+++..|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~  492 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP  492 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence            99999999999999999999999999999999999999999999999999999888866 45899999999999999999


Q ss_pred             ccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCC
Q 047035          581 SSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK  659 (783)
Q Consensus       581 ~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  659 (783)
                      ..+ ++++|++|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++
T Consensus       493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  572 (968)
T PLN00113        493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES  572 (968)
T ss_pred             hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence            888 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEecCCCcCcccCCcc
Q 047035          660 LGILDLSHNKLNGSIPSC  677 (783)
Q Consensus       660 L~~L~ls~N~l~g~iP~~  677 (783)
                      |+.|++++|+++|.||+.
T Consensus       573 L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        573 LVQVNISHNHLHGSLPST  590 (968)
T ss_pred             cCEEeccCCcceeeCCCc
Confidence            999999999999999963

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-40  Score=324.50  Aligned_cols=483  Identities=26%  Similarity=0.373  Sum_probs=361.1

Q ss_pred             CCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcE
Q 047035          149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTE  228 (783)
Q Consensus       149 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  228 (783)
                      .-..|+.+.+++|.+....+  .+.++..|.+|++.+|++...+++++.+..++.++.++|++. .+| ..+..+.+|..
T Consensus        43 ~qv~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~  118 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVK  118 (565)
T ss_pred             hhcchhhhhhccCchhhccH--hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhh
Confidence            34556777777777766554  466777777777777777776667777777777777777765 555 56666777777


Q ss_pred             EEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035          229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS  308 (783)
Q Consensus       229 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~  308 (783)
                      ++++.|.+. .+|+.++.+..|..++..+|+++ ..|..+.++.+|..+++.+|++. ..|...+.              
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~--------------  181 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA--------------  181 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH--------------
Confidence            777777766 45666777777777777777776 55666667777777777777666 44443332              


Q ss_pred             ccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCC
Q 047035          309 NLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP  388 (783)
Q Consensus       309 ~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  388 (783)
                                 ++.|++++...|-++.+|+.++.+.+|..|++..|++. .+|+  +.+|..|++++++.|++.-++...
T Consensus       182 -----------m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~  247 (565)
T KOG0472|consen  182 -----------MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEH  247 (565)
T ss_pred             -----------HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHH
Confidence                       44666777788888899999999999999999999987 6674  347889999999999988765444


Q ss_pred             ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCC-
Q 047035          389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA-  467 (783)
Q Consensus       389 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~-  467 (783)
                      ...++++..||+.+|++. ++|.+++ .+.+|++||+++|.++ .+|.+++++ .|+.|.+.+|.+. .+....+..-+ 
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~  322 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQ  322 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHH
Confidence            568899999999999998 8999997 6889999999999998 678899999 9999999999886 33332221100 


Q ss_pred             -CCcEEE-------CcCcc---cc-cc----CCCcccCCCCccEEEccCcccccccccccccCC---CCcEEEccCCccc
Q 047035          468 -SLEYLD-------VSENN---FY-GH----IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH---GLVVLDISNNLLS  528 (783)
Q Consensus       468 -~L~~L~-------L~~n~---l~-~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~---~L~~L~Ls~n~l~  528 (783)
                       -|++|.       ++...   -+ ..    ..+......+.+.|++++-+++ .+|.......   -....+++.|++.
T Consensus       323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~  401 (565)
T KOG0472|consen  323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC  401 (565)
T ss_pred             HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh
Confidence             011111       11110   00 00    1112234567888999888887 4555443333   3888999999998


Q ss_pred             ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhh
Q 047035          529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF  607 (783)
Q Consensus       529 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~  607 (783)
                       .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|+|++|.+. .+|..+ .+..|+.|+++.|.|. .+|..+.
T Consensus       402 -elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y  478 (565)
T KOG0472|consen  402 -ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY  478 (565)
T ss_pred             -hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence             68877776666555444444444588999999999999999999886 677666 8888999999999998 8999998


Q ss_pred             cCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcch
Q 047035          608 RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCF  678 (783)
Q Consensus       608 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  678 (783)
                      ....++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|+.++++++|++|++.+|+|.  .|...
T Consensus       479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~  546 (565)
T KOG0472|consen  479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQ  546 (565)
T ss_pred             hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHHH
Confidence            8888888888999997767777999999999999999998 88999999999999999999998  56644

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-37  Score=314.15  Aligned_cols=367  Identities=24%  Similarity=0.227  Sum_probs=289.9

Q ss_pred             CCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCC
Q 047035          250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLP  329 (783)
Q Consensus       250 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  329 (783)
                      -++|++++|++....+..|.++++|+++++..|.++ .+|. ......+++.|++.+|.+..+..+              
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~sv~se--------------  143 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISSVTSE--------------  143 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeeccccccccHH--------------
Confidence            455777777777666777777777777777777766 5663 122222244443333333333322              


Q ss_pred             CCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCC
Q 047035          330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGML  409 (783)
Q Consensus       330 ~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  409 (783)
                               .+..++.|+.|||+.|.++ ++|...+..-.++++|+|+.|.|+.+....|..+.+|..|.|+.|+++ .+
T Consensus       144 ---------~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tL  212 (873)
T KOG4194|consen  144 ---------ELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TL  212 (873)
T ss_pred             ---------HHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-cc
Confidence                     3444455555555555554 344333334467888999999988887777888889999999999998 88


Q ss_pred             ChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccC
Q 047035          410 PQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMN  489 (783)
Q Consensus       410 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  489 (783)
                      |...|..+++|+.|+|..|+|.-.--..|.++++|+.|.+..|+++ .+....|..+.++++|+|+.|++...--.++.+
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccc
Confidence            8888888999999999999987443567889999999999999998 777888889999999999999998877778889


Q ss_pred             CCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEe
Q 047035          490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLD  569 (783)
Q Consensus       490 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  569 (783)
                      ++.|+.|++++|.|....+..+.-+++|++|+|++|.++...+..|..+..|++|.|++|+++..--..|..+++|++||
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD  371 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence            99999999999999988888888899999999999999998899999999999999999999866667888999999999


Q ss_pred             CCCcccccccccc---c-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035          570 LSENRLFGSIASS---L-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY  645 (783)
Q Consensus       570 Ls~N~l~~~~p~~---~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  645 (783)
                      |++|.++..+.+.   + ++++|+.|.+.+|++......+|.++..|+.|||.+|.+...-|+.|..+ .|+.|.+..-.
T Consensus       372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            9999998877543   3 78999999999999986666788899999999999999988888888887 78887765433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.3e-40  Score=320.95  Aligned_cols=475  Identities=27%  Similarity=0.337  Sum_probs=250.5

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCC
Q 047035           75 ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLK  154 (783)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~  154 (783)
                      .++.+++++|.+....     +.+.++..|.+|++++|++. ..|++++.+..++.|+.++|++... |. .++.+.+|+
T Consensus        46 ~l~~lils~N~l~~l~-----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p~-~i~s~~~l~  117 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLR-----EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-PE-QIGSLISLV  117 (565)
T ss_pred             chhhhhhccCchhhcc-----HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-cH-HHhhhhhhh
Confidence            4667777777665433     45667777777777777776 4566777777777777777777664 43 577777777


Q ss_pred             eEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCc
Q 047035          155 ALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN  234 (783)
Q Consensus       155 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n  234 (783)
                      +++.++|.+...++  .++.+..|+.++..+|+++..++.++.+.+|..+++.+|++. ..++..+. ++.|++||...|
T Consensus       118 ~l~~s~n~~~el~~--~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N  193 (565)
T KOG0472|consen  118 KLDCSSNELKELPD--SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSN  193 (565)
T ss_pred             hhhccccceeecCc--hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchh
Confidence            77777777766655  566677777777777777766666666667777777777665 34423333 666777776666


Q ss_pred             cccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCC
Q 047035          235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKT  314 (783)
Q Consensus       235 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~  314 (783)
                      .+. .+|..++.+.+|..|++..|++. ..| .|.++..|++|+++.|.+. .+|.....+++++.+|++.+|++...+.
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pd  269 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPD  269 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCch
Confidence            665 45666666666666666666665 445 5666666666666666665 5665555566666665555555433322


Q ss_pred             CCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhc-----CCCCcE----EEccCccccCc-
Q 047035          315 ENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQN-----NTKLEV----LRLSNNSFSGI-  384 (783)
Q Consensus       315 ~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-----l~~L~~----L~L~~n~l~~~-  384 (783)
                       ...-+.+|++|++++|.++.+|..++++ .|+.|.+.+|.+. .+...+.++     +..|+.    =.++...-... 
T Consensus       270 -e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  270 -EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             -HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence             2223344555555555555555555555 5555555555443 111111100     000000    00000000000 


Q ss_pred             ----ccCCc---cCCCCccEEEcccCcCCCCCChhhhhhcC--CceEEeCCCCcccccCCccccCCCCCCe-eeccCCcC
Q 047035          385 ----LQLPK---VKHDLLRHLDISNNNLTGMLPQNMGIVIQ--KLMYIDISKNNFEGNIPYSIGEMKELFL-LDLSRNKF  454 (783)
Q Consensus       385 ----~~~~~---~~~~~L~~L~L~~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~L~~n~l  454 (783)
                          ...++   ......+.|++++-+++ .+|..+|....  -...++++.|++. .+|..+..++.++. +.+++|.+
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence                00000   22333455555555554 45555542211  1445555555554 44544444433332 23333333


Q ss_pred             ccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCC
Q 047035          455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW  534 (783)
Q Consensus       455 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  534 (783)
                                                +.+|..++.+++|..|++++|.+. .+|..++.+..|+.||++.|++. .+|..
T Consensus       425 --------------------------sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~  476 (565)
T KOG0472|consen  425 --------------------------SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC  476 (565)
T ss_pred             --------------------------ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence                                      233333444444444444444443 34444444444555555555444 34444


Q ss_pred             cCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCccc
Q 047035          535 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALS  599 (783)
Q Consensus       535 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~  599 (783)
                      +..+..++.+..++|++....|..+.++.+|++|||.+|.+. .+|..+ ++++|++|++++|+|.
T Consensus       477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            444444444444445554333344555555555555555554 233333 5555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-37  Score=312.33  Aligned_cols=387  Identities=22%  Similarity=0.191  Sum_probs=256.6

Q ss_pred             CEEeCcCCccceecChhhhcCC--CCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEcc
Q 047035          275 EYLALSDNNFQGEFPLSLLTNH--SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLS  352 (783)
Q Consensus       275 ~~L~L~~n~l~~~~p~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls  352 (783)
                      ..|+.+++.+. .+....+.+.  +.-+.|++++|.+..+....|..+++|+++++.+|.++.||.......+++.|+|.
T Consensus        55 ~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            45667776654 2221112221  23456888888888887777888888888888888888888776666678888888


Q ss_pred             CCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccc
Q 047035          353 SNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG  432 (783)
Q Consensus       353 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  432 (783)
                      +|.+. .+...-.+.++.|+.|+|+.|.++.+....+..-.++++|+|++|.++ .+-...|..+.+|..|.|+.|+++.
T Consensus       134 ~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  134 HNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             ccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccc
Confidence            87776 344433446677777777777777766555655566777777777776 3444444456677777777777765


Q ss_pred             cCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccc
Q 047035          433 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL  512 (783)
Q Consensus       433 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  512 (783)
                      ..+..|..+++|+.|+|..|++. .+....|.++++|+.|.+..|.+...-...|..+.++++|+|..|+++..-..++.
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             cCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            55556666777777777777665 44444566677777777777766665556666677777777777777666666666


Q ss_pred             cCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEE
Q 047035          513 NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHL  591 (783)
Q Consensus       513 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L  591 (783)
                      ++++|+.|++|+|.|...-++.+.-+++|++|+|++|+++..-++.|..+..|++|+|++|.+...-...| .+++|++|
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            67777777777777776666666667777777777777776666666667777777777777664444445 66777777


Q ss_pred             EccCCcccccCch---hhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035          592 YLQNNALSGQIPS---TLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS  666 (783)
Q Consensus       592 ~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  666 (783)
                      ||++|.+++.|.+   .|.++++|+.|+|.+|++...--..|.++++|+.|||.+|.+...-|..|..+ .|+.|-+.
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            7777776655543   34556677777777777654333466677777777777777766666666666 66666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=326.12  Aligned_cols=505  Identities=27%  Similarity=0.325  Sum_probs=287.4

Q ss_pred             EeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeC
Q 047035           79 LDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNL  158 (783)
Q Consensus        79 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L  158 (783)
                      +|++.+.+.-. |    ..+-.-..++.|+++.|.+-..+.+++.+..+|+.||+++|++... |. .+..+.+|+.|++
T Consensus         3 vd~s~~~l~~i-p----~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQLELI-P----EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNL   75 (1081)
T ss_pred             cccccccCccc-c----hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC-Cc-hhhhHHHHhhccc
Confidence            45555555432 2    2233334477777777766544455555566677777777766554 43 4666667777777


Q ss_pred             CCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccc
Q 047035          159 SWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG  238 (783)
Q Consensus       159 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~  238 (783)
                      +.|.+...+.  ...++.+|++|.|..|.+...+..+..+++|++|+++.|.+. .+| ..+..+..++.+..++|....
T Consensus        76 s~n~i~~vp~--s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   76 SRNYIRSVPS--SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             chhhHhhCch--hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhh
Confidence            7776666553  566666777777766666655556666666666666666664 444 445555666666666662211


Q ss_pred             cCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCC
Q 047035          239 QLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWI  318 (783)
Q Consensus       239 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  318 (783)
                      .    ++... ++.+++..|.+.+.++..+..++.  .|+|++|.+. ...   +..+++|+.                 
T Consensus       152 ~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~-----------------  203 (1081)
T KOG0618|consen  152 R----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEV-----------------  203 (1081)
T ss_pred             h----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhh-----------------
Confidence            1    11111 555556666555555555555544  5566665543 111   223333332                 


Q ss_pred             CCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEE
Q 047035          319 PTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL  398 (783)
Q Consensus       319 ~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  398 (783)
                                                    +....|++.. +-    -..++++.|+.++|.++..  .......+|+++
T Consensus       204 ------------------------------l~c~rn~ls~-l~----~~g~~l~~L~a~~n~l~~~--~~~p~p~nl~~~  246 (1081)
T KOG0618|consen  204 ------------------------------LHCERNQLSE-LE----ISGPSLTALYADHNPLTTL--DVHPVPLNLQYL  246 (1081)
T ss_pred             ------------------------------hhhhhcccce-EE----ecCcchheeeeccCcceee--ccccccccceee
Confidence                                          2222222220 00    0235566666666666533  223334566777


Q ss_pred             EcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcc
Q 047035          399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN  478 (783)
Q Consensus       399 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  478 (783)
                      +++.|+++ .+|.+++ .+.+|+.++..+|+++ .+|..+....+|+.|++..|++. .+|.. .....+|++|+|..|+
T Consensus       247 dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  247 DISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             ecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhcc
Confidence            77777776 5665554 5677777777777774 66666666677777777777765 45543 2456677777777776


Q ss_pred             ccccCCCcccCCC-CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcc
Q 047035          479 FYGHIFPTYMNLT-QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV  557 (783)
Q Consensus       479 l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  557 (783)
                      +....+..+.-.. +|+.|+.+.|++.......=...+.|+.|++.+|.++...-+.+.+..+|++|+|++|++......
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence            6543322222222 255566666665532211112344566667777776666555666666777777777766644344


Q ss_pred             cccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccC-CchhccCCcC
Q 047035          558 QINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR-IPDQINNHSE  635 (783)
Q Consensus       558 ~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~  635 (783)
                      .+.++..|++|+||+|+++ .+|... ++..|++|...+|.+. ..| .+.+++.|+.+|+|.|.++.. +|.... .++
T Consensus       402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~  477 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPN  477 (1081)
T ss_pred             HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccc
Confidence            5566666777777777765 455555 6666777777777666 566 566677777777777776543 333222 267


Q ss_pred             CCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035          636 LRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN  668 (783)
Q Consensus       636 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  668 (783)
                      |++||+++|.-....-..|..++++...++.-|
T Consensus       478 LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  478 LKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            777777777533233444555556665555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=9e-36  Score=321.61  Aligned_cols=491  Identities=27%  Similarity=0.345  Sum_probs=340.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035           70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN  149 (783)
Q Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~  149 (783)
                      +.....++.|+++.|.+-..+-    +.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|... |. ...+
T Consensus        17 i~~~~~~~~ln~~~N~~l~~pl----~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~v-p~-s~~~   89 (1081)
T KOG0618|consen   17 ILNNEALQILNLRRNSLLSRPL----EFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSV-PS-SCSN   89 (1081)
T ss_pred             hccHHHHHhhhccccccccCch----HHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhC-ch-hhhh
Confidence            3344459999999997765443    56666777999999999986 5678899999999999999999886 53 7999


Q ss_pred             CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035          150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL  229 (783)
Q Consensus       150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  229 (783)
                      +.+|+++.|..|.+...+.  .+..+++|++|++++|.+...+..+..+..++.+..++|...     ..++... .+.+
T Consensus        90 ~~~l~~lnL~~n~l~~lP~--~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~-----~~lg~~~-ik~~  161 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQSLPA--SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKI-----QRLGQTS-IKKL  161 (1081)
T ss_pred             hhcchhheeccchhhcCch--hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhh-----hhhcccc-chhh
Confidence            9999999999999988765  789999999999999999877778899999999999999332     1233333 8899


Q ss_pred             EccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcc
Q 047035          230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN  309 (783)
Q Consensus       230 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~  309 (783)
                      ++..|.+.+.++..+..++.  .|++.+|.+. .  ..+.++.+|+.|....|++. .+.    -.-++++.        
T Consensus       162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~--------  223 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-ELE----ISGPSLTA--------  223 (1081)
T ss_pred             hhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-eEE----ecCcchhe--------
Confidence            99999999988888888777  7999999987 2  35678899999999888776 221    12234444        


Q ss_pred             cccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCc
Q 047035          310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK  389 (783)
Q Consensus       310 ~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~  389 (783)
                                      |+.++|.+..+- ......+++++++++|++. .+|.|+. .+++|+.+...+|.++..+ ...
T Consensus       224 ----------------L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~~lp-~ri  283 (1081)
T KOG0618|consen  224 ----------------LYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLVALP-LRI  283 (1081)
T ss_pred             ----------------eeeccCcceeec-cccccccceeeecchhhhh-cchHHHH-hcccceEecccchhHHhhH-HHH
Confidence                            444555444111 1122347888899998888 6777776 7888888888888886542 223


Q ss_pred             cCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCcc-ccCCCC-CCeeeccCCcCccccChhhhhcCC
Q 047035          390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYS-IGEMKE-LFLLDLSRNKFSGDLSATSVIRCA  467 (783)
Q Consensus       390 ~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~-L~~L~L~~n~l~~~i~~~~~~~l~  467 (783)
                      ...++|+.|.+..|.+. .+|.... ..++|+.|+|..|++. ..|+. +.-... |..+..+.|++. ..|...-...+
T Consensus       284 ~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~  359 (1081)
T KOG0618|consen  284 SRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHA  359 (1081)
T ss_pred             hhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhH
Confidence            55666777777777776 5555543 4667777777777776 34432 222222 555666666665 33432223445


Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS  547 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  547 (783)
                      .|+.|.+.+|.+++...+.+.+.+.|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+.++..|++|...
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence            6777777777777766666677777777777777766444444566667777777777776 566667777777777777


Q ss_pred             CCcccccCcccccCCCCCCEEeCCCccccc-ccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035          548 KNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      +|++. ..| .+..+++|+.+|++.|+++. .+|....-++|++||+++|.-...--..|..+..+...++.-+
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            77766 555 56677777777777777654 2333333366677777666533233344445555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=5.1e-32  Score=279.35  Aligned_cols=364  Identities=26%  Similarity=0.387  Sum_probs=227.7

Q ss_pred             CCCCcEEEccCcccc-ccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcE
Q 047035          223 LKNLTELDLGENNLE-GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV  301 (783)
Q Consensus       223 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~  301 (783)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+.+|++.. +. ..+..++    
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vh-GELs~Lp----   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VH-GELSDLP----   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hh-hhhccch----
Confidence            455667788888887 467888888888888888888887 788888888888888888888762 22 1233344    


Q ss_pred             EEeccCcccccCCCCCCCCccccEEeCCCCCCC--ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCc
Q 047035          302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK--VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN  379 (783)
Q Consensus       302 L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n  379 (783)
                                          .|+.+.+..|+++  .||..++.+..|+.|||++|++. ++|..+- ...++-.|+|++|
T Consensus        79 --------------------~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N  136 (1255)
T KOG0444|consen   79 --------------------RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYN  136 (1255)
T ss_pred             --------------------hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccC
Confidence                                3444455666665  67888888888888888888877 5666543 3344444444444


Q ss_pred             cccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 047035          380 SFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS  459 (783)
Q Consensus       380 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~  459 (783)
                      +|.                         .||..++.++..|-+|||++|.+. .+|..+..+..|+.|+|++|.+. ...
T Consensus       137 ~Ie-------------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQ  189 (1255)
T KOG0444|consen  137 NIE-------------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQ  189 (1255)
T ss_pred             ccc-------------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHH
Confidence            444                         455555555556666666666665 45555566666666666666553 222


Q ss_pred             hhhhhcCCCCcEEECcCcccc-ccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCC
Q 047035          460 ATSVIRCASLEYLDVSENNFY-GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF  538 (783)
Q Consensus       460 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l  538 (783)
                      ...+..+++|+.|.+++.+-+ ..+|.++..+.+|+.++++.|.+. ..|..+.++++|+.|+||+|+++ ......+.-
T Consensus       190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W  267 (1255)
T KOG0444|consen  190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW  267 (1255)
T ss_pred             HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHH
Confidence            222233445555555554332 335555666666666666666665 55666666666666666666665 233333444


Q ss_pred             CCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035          539 SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD  616 (783)
Q Consensus       539 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  616 (783)
                      .+|++|+++.|+++ .+|.+++.+++|+.|.+.+|++.- -+|..+ .+..|+.+...+|++. .+|.++..|..|+.|.
T Consensus       268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~  345 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK  345 (1255)
T ss_pred             hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence            55666666666666 566666666666666666666532 345555 5666666666666665 6677777777777777


Q ss_pred             CcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035          617 LRDNKFFGRIPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       617 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      |++|++. .+|+.|.-++.|+.||++.|.-.
T Consensus       346 L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  346 LDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cccccee-echhhhhhcCCcceeeccCCcCc
Confidence            7777664 56677777777777777766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.6e-32  Score=280.48  Aligned_cols=365  Identities=25%  Similarity=0.355  Sum_probs=306.2

Q ss_pred             CCCCCEEeCcCCccce-ecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEE
Q 047035          271 LTSLEYLALSDNNFQG-EFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL  349 (783)
Q Consensus       271 l~~L~~L~L~~n~l~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L  349 (783)
                      ++-.+-.++++|.+.| .+|.+ ...                        +++++.|.|...++..+|..++.+.+|++|
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~-v~q------------------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHL   60 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHD-VEQ------------------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHL   60 (1255)
T ss_pred             cceeecccccCCcCCCCcCchh-HHH------------------------hhheeEEEechhhhhhChHHHHHHhhhhhh
Confidence            4556677888888874 44432 333                        445666777788888999999999999999


Q ss_pred             EccCCcccCCCChhhhhcCCCCcEEEccCccccCccc-CCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCC
Q 047035          350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ-LPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN  428 (783)
Q Consensus       350 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n  428 (783)
                      .+++|++.. +-..+ ..++.|+.+.+.+|++..... .....+..|+.||+++|++. ++|..+. ..+++-.|+|++|
T Consensus        61 s~~HN~L~~-vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N  136 (1255)
T KOG0444|consen   61 SMAHNQLIS-VHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYN  136 (1255)
T ss_pred             hhhhhhhHh-hhhhh-ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccC
Confidence            999998873 22222 368899999999998865431 22367889999999999998 8898885 6789999999999


Q ss_pred             cccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc-ccc
Q 047035          429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT-GKI  507 (783)
Q Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~  507 (783)
                      +|..+....|.+++.|-.|||++|++. .+|+.. ..+..|++|++++|.+.-.....+..+++|++|.+++.+-+ ..+
T Consensus       137 ~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~  214 (1255)
T KOG0444|consen  137 NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI  214 (1255)
T ss_pred             ccccCCchHHHhhHhHhhhccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence            998443345678999999999999997 777764 68899999999999887555555667889999999987644 357


Q ss_pred             ccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcC
Q 047035          508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLS  586 (783)
Q Consensus       508 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~  586 (783)
                      |.++..+.+|..+|+|.|.+. ..|+.+.++++|+.|+|++|+|+ .+..+.+...+|++|++|+|+++ .+|+.+ .++
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            888999999999999999998 89999999999999999999998 66667778889999999999998 788888 999


Q ss_pred             CCcEEEccCCccc-ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEec
Q 047035          587 SIMHLYLQNNALS-GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL  665 (783)
Q Consensus       587 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  665 (783)
                      .|+.|++.+|+++ .-||++++.+..|+++..++|++ ...|+.+..+..|+.|.|++|++. .+|+.|.-|+.|+.||+
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence            9999999999986 35899999999999999999998 589999999999999999999998 78999999999999999


Q ss_pred             CCCcCc
Q 047035          666 SHNKLN  671 (783)
Q Consensus       666 s~N~l~  671 (783)
                      ..|+=-
T Consensus       370 reNpnL  375 (1255)
T KOG0444|consen  370 RENPNL  375 (1255)
T ss_pred             cCCcCc
Confidence            999754

>PLN03210 Resistant to P

Probab=99.91  E-value=7.6e-23  Score=248.66  Aligned_cols=306  Identities=20%  Similarity=0.225  Sum_probs=138.5

Q ss_pred             CCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeC
Q 047035          346 FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI  425 (783)
Q Consensus       346 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L  425 (783)
                      |+.|.+.++.+. .+|..+  ...+|++|++.+|.+.... .....+++|+.|+++++...+.+|. + ..+++|++|++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L  664 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKL  664 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccc-cccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEe
Confidence            444444444443 333332  2344444555444444332 1123344455555554433334443 1 13445555555


Q ss_pred             CCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccc
Q 047035          426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG  505 (783)
Q Consensus       426 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (783)
                      ++|.....+|..+..+++|+.|++++|...+.+|...  ++++|+.|++++|.....+|..   .++|+.|++++|.+. 
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-  738 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-  738 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence            5544444445555555555555555544333444322  3445555555555433333321   234455555555543 


Q ss_pred             ccccccccCCCCcEEEccCCccc-------ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035          506 KIKAGLLNSHGLVVLDISNNLLS-------GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS  578 (783)
Q Consensus       506 ~~~~~l~~~~~L~~L~Ls~n~l~-------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  578 (783)
                      .+|..+ .+++|+.|++.++...       ...|......++|+.|++++|...+.+|..++++++|+.|++++|...+.
T Consensus       739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence            233322 2444444444442211       01111112234455555555554445555555555555555555544444


Q ss_pred             cccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCC
Q 047035          579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ  658 (783)
Q Consensus       579 ~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  658 (783)
                      +|...++++|+.|++++|.....+|..   .++|+.|+|++|.+. .+|.++..+++|+.|++++|+-...+|..+..++
T Consensus       818 LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        818 LPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             eCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence            554445555555555555443334332   234555555555553 3455555555555555555433334444555555


Q ss_pred             CCCEEecCCC
Q 047035          659 KLGILDLSHN  668 (783)
Q Consensus       659 ~L~~L~ls~N  668 (783)
                      +|+.+++++|
T Consensus       894 ~L~~L~l~~C  903 (1153)
T PLN03210        894 HLETVDFSDC  903 (1153)
T ss_pred             CCCeeecCCC
Confidence            5555555555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=5.1e-22  Score=241.45  Aligned_cols=307  Identities=20%  Similarity=0.214  Sum_probs=211.3

Q ss_pred             cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccc-cCcccCCccCCCCccEEEc
Q 047035          322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF-SGILQLPKVKHDLLRHLDI  400 (783)
Q Consensus       322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~L  400 (783)
                      +|+.|.+.++.++.+|..+ ...+|+.|++.++.+. .++..+ ..+++|+.|+++++.. ..++  .+..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEe
Confidence            4666666666666666654 3456667777666655 344433 2566677777766542 2221  2355667777777


Q ss_pred             ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccc
Q 047035          401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY  480 (783)
Q Consensus       401 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  480 (783)
                      ++|.....+|..+. .+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.    ...+|++|++++|.+.
T Consensus       665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE  738 (1153)
T ss_pred             cCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence            77766566776664 57777777777776555666554 677777777777765545543    2356777778777765


Q ss_pred             ccCCCcccCCCCccEEEccCcccc-------cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccc
Q 047035          481 GHIFPTYMNLTQLRWLYLKNNHFT-------GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG  553 (783)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  553 (783)
                      . +|..+ .+++|+.|.+.++...       ...+..+..+++|+.|++++|...+.+|.+++++++|+.|++++|...+
T Consensus       739 ~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        739 E-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             c-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            3 44433 4667777777664321       1112223345688888888888777888888888888899888887666


Q ss_pred             cCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCC
Q 047035          554 NIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNH  633 (783)
Q Consensus       554 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  633 (783)
                      .+|..+ ++++|+.|++++|.....+|..  .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+
T Consensus       817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        817 TLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             eeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence            777765 6888888999888766566554  467888899988887 788888888899999998876666788888888


Q ss_pred             cCCCEEeCcCCc
Q 047035          634 SELRVLLLRGNY  645 (783)
Q Consensus       634 ~~L~~L~L~~N~  645 (783)
                      +.|+.+++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            888888888885

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=6.1e-25  Score=216.55  Aligned_cols=287  Identities=20%  Similarity=0.160  Sum_probs=199.2

Q ss_pred             CCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccc-ccCCccCchhhcCCCCCCEEe
Q 047035          200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISF-NHLSGNLPSVIANLTSLEYLA  278 (783)
Q Consensus       200 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  278 (783)
                      .-..++|..|+|+ .+|+.+|..+++|+.|||+.|.|+.+-|.+|..+.+|..|-+.+ |+|+...-..|+++..|+.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4567778888876 67777788888888888888888877778888887777766665 777755556777788888888


Q ss_pred             CcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCC---ccChhhhcCCCCCEEEccCCc
Q 047035          279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK---VIPSFLLHQYDFKFLDLSSNK  355 (783)
Q Consensus       279 L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~---~ip~~l~~~~~L~~L~Ls~n~  355 (783)
                      +.-|++. .++...+..++++..|.+.+|.+..+....+.++..++.+.+..|.+.   .+|- +      .. ++.   
T Consensus       147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w-l------a~-~~a---  214 (498)
T KOG4237|consen  147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW-L------AD-DLA---  214 (498)
T ss_pred             cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch-h------hh-HHh---
Confidence            8777776 666677777777777777777777777667777777777776666532   1110 0      00 000   


Q ss_pred             ccCCCChhhhhcCCCCcEEEccCccccCcccCCcc-CCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccC
Q 047035          356 LVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKV-KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNI  434 (783)
Q Consensus       356 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  434 (783)
                         ..|..+ +...-..-..+.+.++..+....+. ....+..--.+.+...+..|...+..+++|++|++++|++++.-
T Consensus       215 ---~~~iet-sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  215 ---MNPIET-SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             ---hchhhc-ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence               011111 1122222233334444333222221 11122222233444555778888888999999999999999888


Q ss_pred             CccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc
Q 047035          435 PYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT  504 (783)
Q Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (783)
                      +.+|.+...+++|.|..|++. .+...+|.++..|+.|+|.+|+++...|.+|..+.+|.+|++-.|++-
T Consensus       291 ~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            899999999999999999997 778888899999999999999999988999999999999999888763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2.5e-24  Score=212.22  Aligned_cols=288  Identities=20%  Similarity=0.140  Sum_probs=175.6

Q ss_pred             CCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccC-ccCcccCCcccccCCCCCcEEE
Q 047035          153 LKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRN-NLLNGSVESKGICELKNLTELD  230 (783)
Q Consensus       153 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~L~  230 (783)
                      -..++|..|+|+.+++. .|+.+++|+.|||++|.|+.+.+ +|..+++|..|-+.+ |+|+ .++...|+++..|+.|.
T Consensus        69 tveirLdqN~I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             ceEEEeccCCcccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            44566666666666553 56666666666666666665555 566666655555554 4554 45555566666666666


Q ss_pred             ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035          231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL  310 (783)
Q Consensus       231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~  310 (783)
                      +.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+..      ..+++.+...       .
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~-------~  213 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADD-------L  213 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhH-------H
Confidence            66665555555555666666666666665552222255555555555555554321      1111111110       0


Q ss_pred             ccCCCCCCCCccccEEeCCCCCCCccChhhhcC--CCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCC
Q 047035          311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ--YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP  388 (783)
Q Consensus       311 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  388 (783)
                      ......+.+.....-..+.+.++.++++.-..+  ..+..--.+.+...+.-|...+..+++|++|+|++|.++.+....
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence            011111112111222222233333332211111  122222223344445677777889999999999999999998888


Q ss_pred             ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 047035          389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG  456 (783)
Q Consensus       389 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  456 (783)
                      |.....+++|.+..|++. .+...++..+..|+.|+|.+|+|+...|.+|..+..|..|.+-.|.+..
T Consensus       294 Fe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             hcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            888999999999999997 7777888889999999999999999999999999999999998887753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.1e-21  Score=217.13  Aligned_cols=268  Identities=25%  Similarity=0.302  Sum_probs=155.9

Q ss_pred             CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEe
Q 047035          345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID  424 (783)
Q Consensus       345 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  424 (783)
                      .-..|+++.+.++ .+|..+.   ++|+.|++.+|+++.++.    ..++|++|++++|+++ .+|.    .+++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccC----cccccceee
Confidence            3456677777666 5665443   356666666666655432    1345555555555555 3342    123455555


Q ss_pred             CCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc
Q 047035          425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT  504 (783)
Q Consensus       425 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (783)
                      +++|.+. .+|..   .++|+.|++++|+++ .+|.                            ..++|+.|++++|.++
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----------------------------~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----------------------------LPPGLQELSVSDNQLA  315 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----------------------------cccccceeECCCCccc
Confidence            5555544 22321   133444445554444 2332                            1234555555555554


Q ss_pred             cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccC
Q 047035          505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN  584 (783)
Q Consensus       505 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  584 (783)
                      + +|..   ...|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..   ..+|+.|++++|++.. +|..  
T Consensus       316 ~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--  380 (788)
T PRK15387        316 S-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--  380 (788)
T ss_pred             c-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--
Confidence            3 2221   1245555555555552 3321   135666666666666 34432   2356666777777663 4443  


Q ss_pred             cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEe
Q 047035          585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILD  664 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  664 (783)
                      ..+|+.|++++|+++ .+|..   .++|+.|++++|++.+ +|...   .+|+.|++++|+++ .+|..++++++|+.|+
T Consensus       381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            346777777777777 45543   2568888888888864 66543   46778889999887 6888888899999999


Q ss_pred             cCCCcCcccCCcchhhcc
Q 047035          665 LSHNKLNGSIPSCFVNML  682 (783)
Q Consensus       665 ls~N~l~g~iP~~~~~~~  682 (783)
                      +++|+|+|.+|..+.+++
T Consensus       452 Ls~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        452 LEGNPLSERTLQALREIT  469 (788)
T ss_pred             CCCCCCCchHHHHHHHHh
Confidence            999999998888886664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=9.5e-21  Score=213.24  Aligned_cols=263  Identities=26%  Similarity=0.301  Sum_probs=167.0

Q ss_pred             ccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEccc
Q 047035          323 LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISN  402 (783)
Q Consensus       323 L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  402 (783)
                      -..|+++.+.++.+|..+.  ++|+.|++.+|+++ .+|.    ..++|++|++++|+++.++..    .++|+.|++++
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc----ccccceeeccC
Confidence            4567888888888887665  37888888888887 4664    357899999999988876432    46788999999


Q ss_pred             CcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccccc
Q 047035          403 NNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH  482 (783)
Q Consensus       403 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  482 (783)
                      |.+. .+|.    .+++|+.|++++|+++ .+|..   .++|+.|++++|+++ .+|..    ..+|+.|++++|++.+ 
T Consensus       272 N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        272 NPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             Cchh-hhhh----chhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc-
Confidence            9887 5554    2357888999999887 45542   467899999999887 45541    2457778888887764 


Q ss_pred             CCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCC
Q 047035          483 IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF  562 (783)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  562 (783)
                      +|..   ..+|+.|++++|++++ +|..   ..+|+.|++++|.+.. +|..   ..+|+.|++++|++++ +|..   .
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~  401 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P  401 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence            3321   2467777777777763 4432   3456666777776663 4432   2346666666666652 4432   1


Q ss_pred             CCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhc
Q 047035          563 RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI  630 (783)
Q Consensus       563 ~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  630 (783)
                      ++|+.|++++|++++ +|..  +.+|+.|++++|+++ .+|..+.+++.|+.|+|++|++++..|..+
T Consensus       402 s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            345556666665543 3332  233445555555554 455555555555555555555555444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=4.4e-19  Score=201.42  Aligned_cols=222  Identities=24%  Similarity=0.381  Sum_probs=112.6

Q ss_pred             CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035          370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL  449 (783)
Q Consensus       370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  449 (783)
                      +...|+++++.++.++.   .-.+.++.|++++|+++ .+|..++   ++|++|++++|+++ .+|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~LtsLP~---~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTIPA---CIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcCCc---ccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            45667777776665432   12345777777777776 5665543   46777777777766 4454432  35666777


Q ss_pred             cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccc
Q 047035          450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG  529 (783)
Q Consensus       450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~  529 (783)
                      ++|.+. .+|....   .+|+.|++++|++.. +|..+.  ++|+.|++++|.+++ +|..+  .++|+.|++++|.++.
T Consensus       249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc
Confidence            776665 5555432   356666666666653 343332  356666666666553 33322  1345555555555552


Q ss_pred             cCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcC
Q 047035          530 HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS  609 (783)
Q Consensus       530 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  609 (783)
                       +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+ .++|++|+|++|+++ .+|..+.  
T Consensus       319 -LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        319 -LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             -CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCC-CCCHhHH--
Confidence             333221  345555555555542 343332  34555555555443 233222 234444444444444 3333332  


Q ss_pred             CCCcEEECcCCcc
Q 047035          610 TELLTLDLRDNKF  622 (783)
Q Consensus       610 ~~L~~L~Ls~N~l  622 (783)
                      ..|+.|++++|++
T Consensus       388 ~sL~~LdLs~N~L  400 (754)
T PRK15370        388 AALQIMQASRNNL  400 (754)
T ss_pred             HHHHHHhhccCCc
Confidence            1344444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.5e-19  Score=203.34  Aligned_cols=292  Identities=22%  Similarity=0.344  Sum_probs=155.9

Q ss_pred             cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcc
Q 047035          322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS  401 (783)
Q Consensus       322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  401 (783)
                      +...|++++++++.+|..+.  +.++.|++++|++. .+|..+.   ++|++|++++|.++.++   ..-...|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP---~~l~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIP---ATLPDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCC---hhhhccccEEECc
Confidence            45567777777766665442  35666666666666 4554432   35566666655555432   1112345555555


Q ss_pred             cCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035          402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG  481 (783)
Q Consensus       402 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  481 (783)
                      +|++. .+|..+.   .+|+.|++++|+++ .+|..+.                           ++|+.|++++|++++
T Consensus       250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~---------------------------~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP---------------------------EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC---------------------------CCCcEEECCCCcccc
Confidence            55554 4444332   34455555555444 2333322                           245555555554443


Q ss_pred             cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccC
Q 047035          482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN  561 (783)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  561 (783)
                       +|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. 
T Consensus       298 -LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        298 -LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             -Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence             222221  245555555555553 33322  2456666666666653 444442  46677777777666 4555442 


Q ss_pred             CCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhh----cCCCCcEEECcCCccccCCchhccCCcCCC
Q 047035          562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLF----RSTELLTLDLRDNKFFGRIPDQINNHSELR  637 (783)
Q Consensus       562 l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  637 (783)
                       ++|+.|++++|+++ .+|..+ ...|+.|++++|+++ .+|..+.    .++.+..|++.+|.++.      ..+++|+
T Consensus       367 -~~L~~LdLs~N~Lt-~LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~  436 (754)
T PRK15370        367 -PTITTLDVSRNALT-NLPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQ  436 (754)
T ss_pred             -CCcCEEECCCCcCC-CCCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHH
Confidence             46777777777776 344433 235777777777776 5555443    34677888888888752      2334445


Q ss_pred             EEeCcCCccccc-CCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          638 VLLLRGNYLQGQ-IPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       638 ~L~L~~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      .| ++.+.+.|. ++...+.++.++....-.+...+.+|.
T Consensus       437 ~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~~  475 (754)
T PRK15370        437 RL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWLTN  475 (754)
T ss_pred             Hh-hhcccccCCcccccccccccccccchHHHHHhccCCc
Confidence            55 344544433 344555566666554455555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2.1e-19  Score=190.41  Aligned_cols=255  Identities=23%  Similarity=0.238  Sum_probs=132.5

Q ss_pred             hcCCceEEeCCCCccccc----CCccccCCCCCCeeeccCCcCcc--c---cChhhhhcCCCCcEEECcCccccccCCCc
Q 047035          416 VIQKLMYIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSG--D---LSATSVIRCASLEYLDVSENNFYGHIFPT  486 (783)
Q Consensus       416 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~--~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  486 (783)
                      .++.|++++++++.+++.    ++..+...+++++++++++.+.+  .   .....+..+++|++|++++|.+.+..+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            344455555555554321    23334444555555555554431  0   00112334556666666666655433333


Q ss_pred             ccCCC---CccEEEccCccccc----ccccccccC-CCCcEEEccCCccccc----CCCCcCCCCCCcEEECCCCccccc
Q 047035          487 YMNLT---QLRWLYLKNNHFTG----KIKAGLLNS-HGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN  554 (783)
Q Consensus       487 ~~~l~---~L~~L~L~~n~l~~----~~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~  554 (783)
                      +..+.   +|++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            33333   26666666666552    122233344 5666666666666532    233344555666666666666532


Q ss_pred             ----CcccccCCCCCCEEeCCCccccccc----cccc-CcCCCcEEEccCCcccccCchhhhc-----CCCCcEEECcCC
Q 047035          555 ----IPVQINNFRQLQLLDLSENRLFGSI----ASSL-NLSSIMHLYLQNNALSGQIPSTLFR-----STELLTLDLRDN  620 (783)
Q Consensus       555 ----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N  620 (783)
                          ++..+..+++|++|++++|.+.+..    +..+ .+++|++|++++|.+++.....+..     .+.|+.|++++|
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence                2333444556777777776665322    2223 4566667777766665432222221     256777777777


Q ss_pred             cccc----CCchhccCCcCCCEEeCcCCccccc----CCcchhCC-CCCCEEecCCCcC
Q 047035          621 KFFG----RIPDQINNHSELRVLLLRGNYLQGQ----IPIALCQL-QKLGILDLSHNKL  670 (783)
Q Consensus       621 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  670 (783)
                      .++.    .+++.+..+++|+.+++++|.++..    +...+... +.|+.+|+.+|++
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            7652    2334455556777777777777643    33334444 5677777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=4.9e-19  Score=155.07  Aligned_cols=184  Identities=28%  Similarity=0.491  Sum_probs=141.6

Q ss_pred             ccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCC
Q 047035          487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ  566 (783)
Q Consensus       487 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  566 (783)
                      +..+...+.|.+++|+++ .+|..+..+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445667778888888887 56666788888888888888887 67888888888999998888887 7888899999999


Q ss_pred             EEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCC
Q 047035          567 LLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN  644 (783)
Q Consensus       567 ~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  644 (783)
                      +||+.+|++.. .+|..| .++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            99998888864 567666 7788888888888887 77777888888888888888775 57788888888888888888


Q ss_pred             cccccCCcchhCCCCC---CEEecCCCcCcccCCc
Q 047035          645 YLQGQIPIALCQLQKL---GILDLSHNKLNGSIPS  676 (783)
Q Consensus       645 ~l~~~~p~~l~~l~~L---~~L~ls~N~l~g~iP~  676 (783)
                      +++ .+|++++++.-+   +.+.+.+|++...|-.
T Consensus       184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            887 667676665322   3455566666555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=4.1e-18  Score=180.49  Aligned_cols=250  Identities=22%  Similarity=0.235  Sum_probs=185.3

Q ss_pred             EEeCCCCccc-ccCCccccCCCCCCeeeccCCcCccc----cChhhhhcCCCCcEEECcCccccc------cCCCcccCC
Q 047035          422 YIDISKNNFE-GNIPYSIGEMKELFLLDLSRNKFSGD----LSATSVIRCASLEYLDVSENNFYG------HIFPTYMNL  490 (783)
Q Consensus       422 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l  490 (783)
                      .|+|..+.++ +.....+..+..|+.+++++|.++..    ++ ..+...+.+++++++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3566666666 34445566778899999999998532    22 234566789999999988762      223456678


Q ss_pred             CCccEEEccCcccccccccccccCCC---CcEEEccCCcccc----cCCCCcCCC-CCCcEEECCCCccccc----Cccc
Q 047035          491 TQLRWLYLKNNHFTGKIKAGLLNSHG---LVVLDISNNLLSG----HIPCWIGNF-SYLDVLLMSKNHLEGN----IPVQ  558 (783)
Q Consensus       491 ~~L~~L~L~~n~l~~~~~~~l~~~~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~  558 (783)
                      ++|+.|++++|.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            89999999999998666665555555   9999999999873    333445566 8999999999999843    4455


Q ss_pred             ccCCCCCCEEeCCCcccccc----ccccc-CcCCCcEEEccCCccccc----CchhhhcCCCCcEEECcCCccccCCchh
Q 047035          559 INNFRQLQLLDLSENRLFGS----IASSL-NLSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGRIPDQ  629 (783)
Q Consensus       559 ~~~l~~L~~L~Ls~N~l~~~----~p~~~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  629 (783)
                      +..+++|++|++++|.+.+.    ++..+ .+++|++|++++|.+++.    ++..+..+++|++|++++|++.+..+..
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            67778999999999998752    23333 567999999999998743    3455667889999999999987643333


Q ss_pred             cc-----CCcCCCEEeCcCCccc----ccCCcchhCCCCCCEEecCCCcCcc
Q 047035          630 IN-----NHSELRVLLLRGNYLQ----GQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       630 l~-----~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      +.     ..+.|+.|++++|.++    ..++..+..++.|+.+|+++|+++.
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            32     2479999999999987    2344556777899999999999974

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1e-18  Score=153.09  Aligned_cols=166  Identities=30%  Similarity=0.502  Sum_probs=153.2

Q ss_pred             cccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCc
Q 047035          511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIM  589 (783)
Q Consensus       511 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~  589 (783)
                      +.++...+.|.+|+|+++ .+|..++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..| .++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            446778899999999999 67778999999999999999998 88999999999999999999987 678888 999999


Q ss_pred             EEEccCCccc-ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035          590 HLYLQNNALS-GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN  668 (783)
Q Consensus       590 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  668 (783)
                      .|||.+|++. ..+|..|..++.|+.|.|+.|.+ ..+|..++++++|++|.++.|.+. ++|.+++.++.|+.|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            9999999986 46899999999999999999999 578999999999999999999998 78999999999999999999


Q ss_pred             cCcccCCcchhhcc
Q 047035          669 KLNGSIPSCFVNML  682 (783)
Q Consensus       669 ~l~g~iP~~~~~~~  682 (783)
                      +++ .+|+.++++.
T Consensus       184 rl~-vlppel~~l~  196 (264)
T KOG0617|consen  184 RLT-VLPPELANLD  196 (264)
T ss_pred             eee-ecChhhhhhh
Confidence            998 7899998875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=5.9e-13  Score=138.51  Aligned_cols=196  Identities=29%  Similarity=0.386  Sum_probs=156.0

Q ss_pred             CCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcE
Q 047035          440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVV  519 (783)
Q Consensus       440 ~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~  519 (783)
                      .+.--...|++.|++. ++|..+ ..+..|+.+.+..|.+.. +|.++.++..|+.++|+.|+++ .+|..++.++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            4555567889999987 788764 467788888888888864 6778888999999999999987 5677777665 889


Q ss_pred             EEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCccc
Q 047035          520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS  599 (783)
Q Consensus       520 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~  599 (783)
                      |-+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.. +|+.+..-.|..||++.|+++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS  224 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee
Confidence            999999988 78888888888999999999987 778888889999999999998874 444443455888999999988


Q ss_pred             ccCchhhhcCCCCcEEECcCCccccCCchhc---cCCcCCCEEeCcCCc
Q 047035          600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQI---NNHSELRVLLLRGNY  645 (783)
Q Consensus       600 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~  645 (783)
                       .+|-.|.+++.|++|-|.+|.+. ..|..+   +...-.++|+..-++
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence             88989999999999999999885 455544   445566778887774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2.3e-11  Score=132.61  Aligned_cols=179  Identities=34%  Similarity=0.435  Sum_probs=111.6

Q ss_pred             CCccEEEccCcccccccccccccCC-CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEe
Q 047035          491 TQLRWLYLKNNHFTGKIKAGLLNSH-GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLD  569 (783)
Q Consensus       491 ~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  569 (783)
                      +.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44555555555554 2333333332 5666666666655 34445566666666666666666 4444444566666677


Q ss_pred             CCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          570 LSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       570 Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      +++|++. .+|... ....|+++.+++|++. ..+..+.++..+..+.+.+|++.. +|..++.+++++.|++++|.++ 
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-
Confidence            7776665 444443 3444777777777544 466667777777777777777643 3667777777888888888777 


Q ss_pred             cCCcchhCCCCCCEEecCCCcCcccCCcc
Q 047035          649 QIPIALCQLQKLGILDLSHNKLNGSIPSC  677 (783)
Q Consensus       649 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  677 (783)
                      .++. ++.+.+++.||+++|.++..+|..
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccchhh
Confidence            3333 777788888888888777666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=1e-12  Score=136.70  Aligned_cols=194  Identities=30%  Similarity=0.441  Sum_probs=151.2

Q ss_pred             CCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEE
Q 047035          466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL  545 (783)
Q Consensus       466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  545 (783)
                      +.--...|++.|++.. +|..+..+-.|+.+.+..|.+. .+|..++++..|+++||+.|+++ ..|..++.++ |+.|.
T Consensus        74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            4445667888888864 6777777888888888888887 67888888889999999999988 7777788776 88888


Q ss_pred             CCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcccc
Q 047035          546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG  624 (783)
Q Consensus       546 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  624 (783)
                      +++|+++ .+|+.++....|..||.+.|.+.. +|..+ ++.+|+.|.+..|++. .+|..+. .-.|..||+|+|+++ 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence            9988887 778888888888888998888874 44444 8888888888888887 6777777 445888888888885 


Q ss_pred             CCchhccCCcCCCEEeCcCCcccccCCcchhCCCC---CCEEecCCCc
Q 047035          625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK---LGILDLSHNK  669 (783)
Q Consensus       625 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~ls~N~  669 (783)
                      .+|-.|.++..|++|-|.+|.+. +.|..++-.-.   -++|+..-|+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            68888888888888888888887 56666654333   3456666664

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=8.3e-11  Score=133.96  Aligned_cols=111  Identities=32%  Similarity=0.491  Sum_probs=70.4

Q ss_pred             CCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcC
Q 047035          565 LQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRG  643 (783)
Q Consensus       565 L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  643 (783)
                      ++.|+|++|.+.|.+|..+ .+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|+.++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4555566666655555555 556666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcccccCCcchhCC-CCCCEEecCCCcCcccCC
Q 047035          644 NYLQGQIPIALCQL-QKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       644 N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP  675 (783)
                      |+++|.+|..++.+ .++..+++.+|+..+.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            66666666666543 345566777776555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=6.2e-12  Score=127.19  Aligned_cols=209  Identities=28%  Similarity=0.313  Sum_probs=91.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCc-ccccCCCCCCEEEccCCcCCCCCCc-hhccCCCCCCeEeCCCCCCCCCcCccccCCCCC
Q 047035          100 SSKKLKILNLNYNNFNDSVL-PYLNTLTSLTTLNLYYNRIGGLNPS-QGLANLRNLKALNLSWNGISSGATRLGLGNLTN  177 (783)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  177 (783)
                      ++++|+...|.++.+..... .....|++++.|||++|-+....+. +....+++|+.|+++.|++........-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34445555555444432111 2344455555555555444332211 122345555555555554443322212223455


Q ss_pred             CCEEECcCCcCccc-CC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccC-CccccCCCCCCEEE
Q 047035          178 LEVLDLSANRISGS-LT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL-PWCLSDLIGLKVLD  254 (783)
Q Consensus       178 L~~L~Ls~n~~~~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  254 (783)
                      |+.|.|+.|.++.. +. .+..+++|+.|++..|... .+......-+..|++|||++|.+...- -...+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            55555555555421 11 2334555555555555311 111122333455555555555544211 12344555555555


Q ss_pred             cccccCCcc-Cchh-----hcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcc
Q 047035          255 ISFNHLSGN-LPSV-----IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN  309 (783)
Q Consensus       255 L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~  309 (783)
                      ++.+.+... .|+.     ...+++|++|++..|++...-....+..+++|+.|.+..+.+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            555555421 1221     234566666666666664211222334455555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.6e-11  Score=112.55  Aligned_cols=108  Identities=37%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhc-cCC
Q 047035           73 FQELQILDLSGNYFDGWNENKDYDSSG-SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL-ANL  150 (783)
Q Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l-~~l  150 (783)
                      ..++++|+|++|.|+..      +.++ .+.+|+.|+|++|.++.  .+.+..+++|++|++++|+|+.+.+  .+ ..+
T Consensus        18 ~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~l   87 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISE--GLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH--HHHHH-
T ss_pred             ccccccccccccccccc------cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCcccc--chHHhC
Confidence            33556666666665443      2333 35566666666666653  2345556666666666666655421  23 345


Q ss_pred             CCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcc
Q 047035          151 RNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG  190 (783)
Q Consensus       151 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~  190 (783)
                      ++|++|++++|++.....-..++.+++|++|++.+|.+..
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            6666666666666554443345556666666666665543

>PLN03150 hypothetical protein; Provisional

Probab=99.08  E-value=1.6e-10  Score=131.73  Aligned_cols=95  Identities=35%  Similarity=0.504  Sum_probs=91.6

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035          587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS  666 (783)
Q Consensus       587 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  666 (783)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCcchhhc
Q 047035          667 HNKLNGSIPSCFVNM  681 (783)
Q Consensus       667 ~N~l~g~iP~~~~~~  681 (783)
                      +|+++|.+|..++..
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            999999999988764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.8e-10  Score=125.51  Aligned_cols=197  Identities=37%  Similarity=0.499  Sum_probs=125.9

Q ss_pred             EEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCC-CCCEEEccCCcCCCCCCchhccCCCCCCeE
Q 047035           78 ILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLT-SLTTLNLYYNRIGGLNPSQGLANLRNLKAL  156 (783)
Q Consensus        78 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  156 (783)
                      .+++..+.+....     ..+..++.++.|++.+|.++ .++...+.+. +|+.|++++|++... | ..++.+++|+.|
T Consensus        97 ~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~-~~~~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLRSNI-----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-P-SPLRNLPNLKNL  168 (394)
T ss_pred             eeeccccccccCc-----hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-h-hhhhcccccccc
Confidence            4666666553222     33445567777777777776 3455555553 777777777777664 2 246777777777


Q ss_pred             eCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccc
Q 047035          157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNL  236 (783)
Q Consensus       157 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l  236 (783)
                      ++++|++.....  ..+.++.|+.|++++|++...++.......|+++.+++|.+. ..+ ..+.++.++..+.+.+|++
T Consensus       169 ~l~~N~l~~l~~--~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~-~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         169 DLSFNDLSDLPK--LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELL-SSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ccCCchhhhhhh--hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecc-hhhhhcccccccccCCcee
Confidence            777777776654  233677777777777777755555555666777777777432 222 3466677777777777766


Q ss_pred             cccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecC
Q 047035          237 EGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP  289 (783)
Q Consensus       237 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  289 (783)
                      .. .+..++.++.+++|++++|.++.. +. ++.+.+++.|+++++.+....|
T Consensus       245 ~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         245 ED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence            53 355666777777777777777633 33 6777777777777777664444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.8e-11  Score=123.96  Aligned_cols=138  Identities=25%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             cCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCc-cccCCCCCCCEEECcCCcCcccCC--CcCCCC
Q 047035          123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATR-LGLGNLTNLEVLDLSANRISGSLT--ELAPFR  199 (783)
Q Consensus       123 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~--~l~~l~  199 (783)
                      .++.+|+...|.++.+...........|++++.|||++|-+....+- .....+++|+.|+++.|++.....  .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            35566666666666554332112345566666666666655543221 123456666666666666543222  112344


Q ss_pred             CCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccC
Q 047035          200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL  260 (783)
Q Consensus       200 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  260 (783)
                      +|+.|.++.|.++..-.......+|+|+.|+|..|...........-+..|+.|||++|.+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            5555555555554211111223345555555555532211122222333444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=6e-11  Score=110.17  Aligned_cols=109  Identities=40%  Similarity=0.492  Sum_probs=33.2

Q ss_pred             ccCCCCCCCEEeCCCCCCCCCCccccc-CCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCcccc-CC
Q 047035           97 SSGSSKKLKILNLNYNNFNDSVLPYLN-TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGL-GN  174 (783)
Q Consensus        97 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-~~  174 (783)
                      .+.+..+++.|+|.+|.++.  .+.++ .+.+|++|+|++|.|+.+   ..+..+++|++|++++|.++.+..  .+ ..
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~   86 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISE--GLDKN   86 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CH--HHHHH
T ss_pred             cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcccc--chHHh
Confidence            35566678888888888864  23455 577888888888888776   247778888888888888877643  23 35


Q ss_pred             CCCCCEEECcCCcCcccCC--CcCCCCCCCEEEccCccCc
Q 047035          175 LTNLEVLDLSANRISGSLT--ELAPFRNLKVLGMRNNLLN  212 (783)
Q Consensus       175 l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~L~~n~l~  212 (783)
                      +++|++|++++|++.....  .++.+++|++|++.+|.++
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            7788888888887764322  4445555555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=1.6e-11  Score=121.08  Aligned_cols=216  Identities=23%  Similarity=0.234  Sum_probs=106.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCC---CCCCCcc-------cccCCCCCCEEEccCCcCC
Q 047035           70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN---FNDSVLP-------YLNTLTSLTTLNLYYNRIG  139 (783)
Q Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---~~~~~~~-------~l~~l~~L~~L~Ls~n~l~  139 (783)
                      +..+..++.++||+|.+...-.......+.+.+.|+..+++.--   ....+|+       .+-.+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34455666666666665332222222445555666666665421   1122332       2344567777777777654


Q ss_pred             CCCCc---hhccCCCCCCeEeCCCCCCCCCcCc------------cccCCCCCCCEEECcCCcCcccCC-----CcCCCC
Q 047035          140 GLNPS---QGLANLRNLKALNLSWNGISSGATR------------LGLGNLTNLEVLDLSANRISGSLT-----ELAPFR  199 (783)
Q Consensus       140 ~~~p~---~~l~~l~~L~~L~L~~n~l~~~~~~------------~~l~~l~~L~~L~Ls~n~~~~~~~-----~l~~l~  199 (783)
                      ...+.   ..+..++.|++|.|.+|.+......            ...+.-+.|+++...+|++.....     .+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            33221   2345666777777777766543221            122334566666666666543222     234445


Q ss_pred             CCCEEEccCccCccc---CCcccccCCCCCcEEEccCccccc----cCCccccCCCCCCEEEcccccCCccCchhh----
Q 047035          200 NLKVLGMRNNLLNGS---VESKGICELKNLTELDLGENNLEG----QLPWCLSDLIGLKVLDISFNHLSGNLPSVI----  268 (783)
Q Consensus       200 ~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l----  268 (783)
                      .|+.+.+..|.+...   +-..++..+++|+.|||.+|.++.    .+...+..+++|+.|++++|.+......++    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            566666665554311   111334455666666666665542    122334445555666666555543322222    


Q ss_pred             -cCCCCCCEEeCcCCccc
Q 047035          269 -ANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       269 -~~l~~L~~L~L~~n~l~  285 (783)
                       ...++|+.|.+.+|.++
T Consensus       266 ~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hccCCCCceeccCcchhH
Confidence             12455555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=9.1e-11  Score=112.77  Aligned_cols=130  Identities=25%  Similarity=0.216  Sum_probs=98.7

Q ss_pred             CCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECc
Q 047035          539 SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR  618 (783)
Q Consensus       539 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  618 (783)
                      +.|+.+++++|.|+ .+.+++.-.+.++.|++++|.+.. +...-.+++|+.|||++|.++ .+...=..+-+.+.|.|+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            56888888888887 566777777888888888888863 333227888888888888887 455555567788888999


Q ss_pred             CCccccCCchhccCCcCCCEEeCcCCcccccC-CcchhCCCCCCEEecCCCcCccc
Q 047035          619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQI-PIALCQLQKLGILDLSHNKLNGS  673 (783)
Q Consensus       619 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~  673 (783)
                      +|.+..  -..++.+-+|..||+++|++.... -..+++++.|+++.|.+||+.+.
T Consensus       361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            988732  245777888889999999887432 24588999999999999999864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=2.2e-10  Score=110.25  Aligned_cols=128  Identities=28%  Similarity=0.261  Sum_probs=80.5

Q ss_pred             cCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCC
Q 047035          172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK  251 (783)
Q Consensus       172 l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  251 (783)
                      +..++.|+++||++|.|+....+..-.+.++.|++++|.+. .+  ..+..+++|++|||++|.++ .+..+-.++-+++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-ee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            44566777778888877766556666777777777777775 33  23667777777777777776 3444555666777


Q ss_pred             EEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEec
Q 047035          252 VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLK  305 (783)
Q Consensus       252 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~  305 (783)
                      +|.+++|.+...  ..++++-+|..|++++|++..--....++++|-|+++.+.
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            777777776522  3466666777777777776522122234444444444333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.92  E-value=1.1e-10  Score=115.30  Aligned_cols=112  Identities=22%  Similarity=0.269  Sum_probs=58.3

Q ss_pred             hcCCCCcEEECcCcccccc----CCCcccCCCCccEEEccCcccccc----cccccccCCCCcEEEccCCcccccCCCCc
Q 047035          464 IRCASLEYLDVSENNFYGH----IFPTYMNLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLLSGHIPCWI  535 (783)
Q Consensus       464 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  535 (783)
                      ...+.|+.+.++.|.+...    ....+..+++|++|+|.+|.++..    +...+..+++|++|++++|.+.......+
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            3445555555555544321    112344555555555555555422    22234445566666666666553322222


Q ss_pred             -----CCCCCCcEEECCCCccccc----CcccccCCCCCCEEeCCCccc
Q 047035          536 -----GNFSYLDVLLMSKNHLEGN----IPVQINNFRQLQLLDLSENRL  575 (783)
Q Consensus       536 -----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l  575 (783)
                           ...++|++|.+.+|.++..    +..++...+.|..|+|++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 1246677777777766522    333455567777777777777

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=3.4e-09  Score=123.30  Aligned_cols=130  Identities=28%  Similarity=0.346  Sum_probs=82.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCC--CCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035           72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN--FNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN  149 (783)
Q Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~  149 (783)
                      .....|...+.+|.+.....      -..+++|++|-+.+|.  +......+|..++.|++|||++|.-.+..|. .++.
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~  593 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGE  593 (889)
T ss_pred             chhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhh
Confidence            33556666666665533221      1234467777777775  4444455577777777777777665555564 6777


Q ss_pred             CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCcc
Q 047035          150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNL  210 (783)
Q Consensus       150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~  210 (783)
                      +-+||+|+++++.+...+.  .+++++.|.+|++..+.....++ ....+.+|++|.+....
T Consensus       594 Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhcccccCCCccccch--HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777777777777776554  67777777777777766554445 33447777777765543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=9e-10  Score=120.14  Aligned_cols=247  Identities=23%  Similarity=0.243  Sum_probs=150.1

Q ss_pred             cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEE
Q 047035          417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWL  496 (783)
Q Consensus       417 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  496 (783)
                      +..++.+.+..|.+.. +-..+..+++|..+++.+|++.. +... ...+++|++|++++|.++...  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence            3444455555555542 22234555666666666666652 2211 345666777777777665532  34455567777


Q ss_pred             EccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccc
Q 047035          497 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL  575 (783)
Q Consensus       497 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  575 (783)
                      ++.+|.++.  ...+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            777777653  2234446777777777777764433 2 45667777777877777622  2344445555567777777


Q ss_pred             ccccccccCcC--CCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccccc---C
Q 047035          576 FGSIASSLNLS--SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQ---I  650 (783)
Q Consensus       576 ~~~~p~~~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~  650 (783)
                      +..-+. ..+.  .|+.+++++|.+. .++..+..+..+..|++.+|++...  ..+...+.+..+....|.+...   .
T Consensus       221 ~~~~~l-~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (414)
T KOG0531|consen  221 SKLEGL-NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS  296 (414)
T ss_pred             eeccCc-ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence            633221 1222  3788888888887 4446677778888888888887543  2345556677777777776522   1


Q ss_pred             Ccc-hhCCCCCCEEecCCCcCcccCCcc
Q 047035          651 PIA-LCQLQKLGILDLSHNKLNGSIPSC  677 (783)
Q Consensus       651 p~~-l~~l~~L~~L~ls~N~l~g~iP~~  677 (783)
                      ... .+..+.++...+..|+.....+..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (414)
T KOG0531|consen  297 QEYITSAAPTLVTLTLELNPIRKISSLD  324 (414)
T ss_pred             ccccccccccccccccccCccccccccc
Confidence            211 566778888888888887766643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.5e-09  Score=118.41  Aligned_cols=199  Identities=35%  Similarity=0.409  Sum_probs=104.3

Q ss_pred             cCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCC
Q 047035          123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLK  202 (783)
Q Consensus       123 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~  202 (783)
                      ..+..++.+++..|.+....  ..+..+++|+.|++.+|.+..+..  .+..+++|++|++++|.|+.. ..+..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~--~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKIL--NHLSKLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKL-EGLSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhhhhh--cccccccceeeeeccccchhhccc--chhhhhcchheeccccccccc-cchhhccchh
Confidence            45566666667777766531  236677777777777777776543  255677777777777776632 2344444566


Q ss_pred             EEEccCccCcccCCcccccCCCCCcEEEccCccccccCC-ccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcC
Q 047035          203 VLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP-WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD  281 (783)
Q Consensus       203 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  281 (783)
                      .|++++|.++. +  ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..
T Consensus       144 ~L~l~~N~i~~-~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  144 ELNLSGNLISD-I--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLD  217 (414)
T ss_pred             hheeccCcchh-c--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccc
Confidence            66666666542 1  234445555555555555553222 1 24444455555555544311  1222222233334444


Q ss_pred             CccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCccc
Q 047035          282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLV  357 (783)
Q Consensus       282 n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~  357 (783)
                      |.+.                         .+.........+|+.+++.++.+..++..+..+..+..+++..|++.
T Consensus       218 n~i~-------------------------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  218 NKIS-------------------------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccce-------------------------eccCcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            4333                         22211111111366667777777666555555666666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=1.2e-08  Score=77.83  Aligned_cols=60  Identities=40%  Similarity=0.492  Sum_probs=40.9

Q ss_pred             CCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035          611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  670 (783)
                      +|++|++++|++....+.+|.++++|++|++++|+++...|..|.++++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566677777766655556666777777777777777666666677777777777777764

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=1.9e-08  Score=117.11  Aligned_cols=130  Identities=25%  Similarity=0.265  Sum_probs=83.7

Q ss_pred             CCCcEEEccCccccCcccCCccCCCCccEEEcccCcC-CCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCee
Q 047035          369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNL-TGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL  447 (783)
Q Consensus       369 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  447 (783)
                      ...+...+-+|.+..+.  ....++.|++|-+..|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            45566666666555442  223345677777777651 235666666667777777777776666777777777777777


Q ss_pred             eccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc
Q 047035          448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH  502 (783)
Q Consensus       448 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  502 (783)
                      ++++..+. .+|.. +.++..|.+|++..+.....++.....+.+|++|.+..-.
T Consensus       601 ~L~~t~I~-~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777776 66665 3567777777777766555555555557777777765543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=3.1e-08  Score=75.52  Aligned_cols=59  Identities=37%  Similarity=0.463  Sum_probs=27.5

Q ss_pred             CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcc
Q 047035          516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR  574 (783)
Q Consensus       516 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  574 (783)
                      +|++|++++|++....+.+|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444444444444444444444444444444444444443

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.6e-09  Score=104.43  Aligned_cols=193  Identities=23%  Similarity=0.188  Sum_probs=99.9

Q ss_pred             CCEEeCCCCCCCC-CCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCC-CCCCcCccccCCCCCCCEE
Q 047035          104 LKILNLNYNNFND-SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNG-ISSGATRLGLGNLTNLEVL  181 (783)
Q Consensus       104 L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L  181 (783)
                      |++||||...++. .+...+..|.+|+.|.|.++++.+.+.. .+++-.+|+.|+++.+. ++.......+.+|+.|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5555555554432 1223344555555555555555544332 45555555555555542 3332222334556666666


Q ss_pred             ECcCCcCcccCC--CcCC-CCCCCEEEccCccCc---ccCCcccccCCCCCcEEEccCcc-ccccCCccccCCCCCCEEE
Q 047035          182 DLSANRISGSLT--ELAP-FRNLKVLGMRNNLLN---GSVESKGICELKNLTELDLGENN-LEGQLPWCLSDLIGLKVLD  254 (783)
Q Consensus       182 ~Ls~n~~~~~~~--~l~~-l~~L~~L~L~~n~l~---~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~  254 (783)
                      +|+.|.+....-  .+.. -++|+.|+++++.-.   ..+. .....+++|.+|||++|. ++......|.+++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            666655432211  1111 245666666654321   1111 234567888888888764 3333334566778888888


Q ss_pred             cccccCCccCchh---hcCCCCCCEEeCcCCccceecChhhhcCCCCCcE
Q 047035          255 ISFNHLSGNLPSV---IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV  301 (783)
Q Consensus       255 L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~  301 (783)
                      ++.|..  .+|..   +...|.|.+|++.++--.+.... ....+++|+.
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel-~~e~~~~lki  391 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMEL-LKEMLSHLKI  391 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHH-HHHhCccccc
Confidence            888764  45543   45678888888887643322221 2334555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=3.1e-09  Score=114.07  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=15.5

Q ss_pred             cccccCCCCCCEEeCCCCCCC
Q 047035           67 FSLFLPFQELQILDLSGNYFD   87 (783)
Q Consensus        67 ~~~~~~l~~L~~L~Ls~n~l~   87 (783)
                      +-.+..|+.||+|.|.++.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             CceeccccceeeEEecCcchh
Confidence            345677888888888887764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.42  E-value=3.6e-09  Score=106.92  Aligned_cols=280  Identities=23%  Similarity=0.156  Sum_probs=154.7

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCC-CCCCCcccc-cCCCCCCEEEccCCc-CCCCCCchhccCC
Q 047035           74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN-FNDSVLPYL-NTLTSLTTLNLYYNR-IGGLNPSQGLANL  150 (783)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l-~~l~~L~~L~Ls~n~-l~~~~p~~~l~~l  150 (783)
                      ..|+.|.+.++.-.+.  .........++++++|++.+|. +++.....+ ..++.|++|+|..|. ++...-......+
T Consensus       138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            3578888887653332  2222445678899999988886 333333333 468899999998854 4443221234578


Q ss_pred             CCCCeEeCCCCC-CCCCcCccccCCCCCCCEEECcCCcCcccCC---CcCCCCCCCEEEccCccCcccCC-cccccCCCC
Q 047035          151 RNLKALNLSWNG-ISSGATRLGLGNLTNLEVLDLSANRISGSLT---ELAPFRNLKVLGMRNNLLNGSVE-SKGICELKN  225 (783)
Q Consensus       151 ~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~l~~  225 (783)
                      ++|++|++++|. +++........+++.++.+.+.+|.-.+.-.   .-+.+..+.++++..|....... ...-..+..
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            899999999884 3332222345667778888777764322111   22344556666666654321211 122235677


Q ss_pred             CcEEEccCccccc-cCCccc-cCCCCCCEEEcccccC-CccCchhh-cCCCCCCEEeCcCCccceecC-hhhhcCCCCCc
Q 047035          226 LTELDLGENNLEG-QLPWCL-SDLIGLKVLDISFNHL-SGNLPSVI-ANLTSLEYLALSDNNFQGEFP-LSLLTNHSNLE  300 (783)
Q Consensus       226 L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p-~~~l~~l~~L~  300 (783)
                      |+.|+.+++...+ ..-.++ .+..+|+.|.+..|+- +..--..+ .+++.|+.+++.++.....-. ...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            8888888775432 111222 3567888888888763 32222223 356778888888775432211 11234677777


Q ss_pred             EEEeccCcccccC-----CCCCCCCccccEEeCCCCCCC--ccChhhhcCCCCCEEEccCCc
Q 047035          301 VLLLKVSSNLRLK-----TENWIPTFQLKVLQLPNCNLK--VIPSFLLHQYDFKFLDLSSNK  355 (783)
Q Consensus       301 ~L~l~~~~~~~~~-----~~~~~~~~~L~~L~L~~~~l~--~ip~~l~~~~~L~~L~Ls~n~  355 (783)
                      .+.++.|....-.     ...-.....++.+.++++...  ..-..+..+++|+.+++-+++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7777765542211     111223445555555555443  333344455555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=7.5e-09  Score=99.91  Aligned_cols=157  Identities=20%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             CCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCcc-CcccCCcccccCCCCCcEE
Q 047035          152 NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNL-LNGSVESKGICELKNLTEL  229 (783)
Q Consensus       152 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L  229 (783)
                      .|++|||+...++.......+..|.+|+.|.+.++++...+. .+++-.+|+.|+++.+. ++.....-.+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666666544333345566666666666666665444 56666666666666543 2211111234566666677


Q ss_pred             EccCccccccCCcccc-C-CCCCCEEEcccccCC---ccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEe
Q 047035          230 DLGENNLEGQLPWCLS-D-LIGLKVLDISFNHLS---GNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL  304 (783)
Q Consensus       230 ~L~~n~l~~~~~~~l~-~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l  304 (783)
                      ++++|.+.......+. . -+.|+.|+++++.-.   ..+..-...+++|.+|||++|.....--...+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7766665432211111 1 134666666655311   1111122356666666666654221111122344555555555


Q ss_pred             ccCc
Q 047035          305 KVSS  308 (783)
Q Consensus       305 ~~~~  308 (783)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            5443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=2.5e-07  Score=88.43  Aligned_cols=142  Identities=23%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCC---CCCCc-------ccccCCCCCCEEEccCCcCC
Q 047035           70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNF---NDSVL-------PYLNTLTSLTTLNLYYNRIG  139 (783)
Q Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~---~~~~~-------~~l~~l~~L~~L~Ls~n~l~  139 (783)
                      +..+..++.+|||+|.|........+..+++-++|+..+++.-..   .+.++       +.+-+||+|+..+||.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            344678888888888876544444556677778888888876422   12222       34567888888888888876


Q ss_pred             CCCCc---hhccCCCCCCeEeCCCCCCCCCcCc------------cccCCCCCCCEEECcCCcCcccCC-----CcCCCC
Q 047035          140 GLNPS---QGLANLRNLKALNLSWNGISSGATR------------LGLGNLTNLEVLDLSANRISGSLT-----ELAPFR  199 (783)
Q Consensus       140 ~~~p~---~~l~~l~~L~~L~L~~n~l~~~~~~------------~~l~~l~~L~~L~Ls~n~~~~~~~-----~l~~l~  199 (783)
                      ...|.   ..+++-+.|++|.+++|.+-.....            .....-|.|++.....|++.....     .+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            65542   3466778888888888876543321            012234566666666666543322     112223


Q ss_pred             CCCEEEccCccC
Q 047035          200 NLKVLGMRNNLL  211 (783)
Q Consensus       200 ~L~~L~L~~n~l  211 (783)
                      .|+++.+..|.+
T Consensus       186 ~lk~vki~qNgI  197 (388)
T COG5238         186 NLKEVKIQQNGI  197 (388)
T ss_pred             CceeEEeeecCc
Confidence            455555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=2.2e-07  Score=89.91  Aligned_cols=189  Identities=20%  Similarity=0.197  Sum_probs=84.0

Q ss_pred             CCCCcEEEccCccccc--cCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCc
Q 047035          223 LKNLTELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE  300 (783)
Q Consensus       223 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~  300 (783)
                      ++.++++||.+|.++.  .+...+.++|.|++|+++.|.+...+-..-..+.+|+.|.|.+..+.-.-....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3455556666655542  23333445566666666666554322211123455666666555443222223455566666


Q ss_pred             EEEeccCcccccCCCC---CCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEcc
Q 047035          301 VLLLKVSSNLRLKTEN---WIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS  377 (783)
Q Consensus       301 ~L~l~~~~~~~~~~~~---~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  377 (783)
                      +|+++.|.......++   -...+.++++....|...              +..+-|++.        .-++++..+.+.
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~--------------~w~~~~~l~--------r~Fpnv~sv~v~  207 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ--------------LWLNKNKLS--------RIFPNVNSVFVC  207 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHH--------------HHHHHHhHH--------hhcccchheeee
Confidence            6666655321111000   000112222222222111              111111111        123555556666


Q ss_pred             CccccCcccC-CccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCccccc
Q 047035          378 NNSFSGILQL-PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGN  433 (783)
Q Consensus       378 ~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  433 (783)
                      .|++...... .+..++.+.-|+++.+++...-.-.....++.|..|.++++.+.+.
T Consensus       208 e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  208 EGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             cCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            6655443211 1234555556666666664322222223567777777777776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=5e-08  Score=105.05  Aligned_cols=125  Identities=31%  Similarity=0.313  Sum_probs=79.5

Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCC-CcCCCCCCcEEEC
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC-WIGNFSYLDVLLM  546 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L  546 (783)
                      .|...+.+.|.+.- +..++.-++.|+.|+|++|+++...  .+..++.|+.|||++|.+. .+|. ....+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            56666677776643 3345556677777777777776432  5666777777777777776 3343 222333 777777


Q ss_pred             CCCcccccCcccccCCCCCCEEeCCCcccccccc--cccCcCCCcEEEccCCccc
Q 047035          547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA--SSLNLSSIMHLYLQNNALS  599 (783)
Q Consensus       547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~L~~n~l~  599 (783)
                      ++|.++. + ..+.++++|+.||+++|-+.+.-.  ..+.+..|+.|+|.+|.+-
T Consensus       240 rnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777762 2 346677777777887777765322  2226677777777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=2.5e-07  Score=89.62  Aligned_cols=203  Identities=22%  Similarity=0.213  Sum_probs=120.8

Q ss_pred             CCCCCCEEeCCCCCCCC--CCcccccCCCCCCEEEccCCcCCCCCCchhc-cCCCCCCeEeCCCCCCCCCcCccccCCCC
Q 047035          100 SSKKLKILNLNYNNFND--SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL-ANLRNLKALNLSWNGISSGATRLGLGNLT  176 (783)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  176 (783)
                      .+++++.|||.+|.+++  .+...+.++|+|++|+|+.|++...+..  + ..+.+|+.|-|.+..+........+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            45678888888887764  2444556788888888888887665432  3 45678888888888776655545667788


Q ss_pred             CCCEEECcCCcCcc---cCCCcCCC-CCCCEEEccCccCcccCCc-ccccCCCCCcEEEccCccccccC-CccccCCCCC
Q 047035          177 NLEVLDLSANRISG---SLTELAPF-RNLKVLGMRNNLLNGSVES-KGICELKNLTELDLGENNLEGQL-PWCLSDLIGL  250 (783)
Q Consensus       177 ~L~~L~Ls~n~~~~---~~~~l~~l-~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L  250 (783)
                      .++.|.++.|.+..   ........ +.+++|....|...-.... ....-++++..+-+..|.+.... ...+..++.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            88888888874432   11122222 2455555555432110000 01122467777777777665322 2344556666


Q ss_pred             CEEEcccccCCcc-CchhhcCCCCCCEEeCcCCccceecCh-----hhhcCCCCCcEEEe
Q 047035          251 KVLDISFNHLSGN-LPSVIANLTSLEYLALSDNNFQGEFPL-----SLLTNHSNLEVLLL  304 (783)
Q Consensus       251 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~-----~~l~~l~~L~~L~l  304 (783)
                      --|+|+.+++... --+++.+++.|..|.++++.+...+.-     -.++.+++++.|+=
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            6777777777532 224577788888888888876532221     13456677776643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=4.3e-07  Score=77.82  Aligned_cols=112  Identities=22%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             CCCCCCEEeCCCccccccccccc--CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCE
Q 047035          561 NFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRV  638 (783)
Q Consensus       561 ~l~~L~~L~Ls~N~l~~~~p~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  638 (783)
                      ....|+..+|++|.+.. .|..+  .++.++.|++.+|.++ .+|..+..++.|+.|+++.|++. ..|+.+..+.++-.
T Consensus        51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            33445555666666653 33333  4556666666666665 55666666666666666666663 44555555666666


Q ss_pred             EeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          639 LLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       639 L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      |+..+|.+. .+|-.+-.-+..-..++.++++.+.-|.
T Consensus       128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            666666555 4444333323333344555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=7.8e-06  Score=78.44  Aligned_cols=42  Identities=31%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             hcCCCCCCEEeCcCCccceecCh---hhhcCCCCCcEEEeccCcc
Q 047035          268 IANLTSLEYLALSDNNFQGEFPL---SLLTNHSNLEVLLLKVSSN  309 (783)
Q Consensus       268 l~~l~~L~~L~L~~n~l~~~~p~---~~l~~l~~L~~L~l~~~~~  309 (783)
                      +.+||+|+..+|++|.+....|.   ..++..+.|++|.+++|..
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            44455555555555555433332   2233444455555444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=2e-05  Score=72.65  Aligned_cols=84  Identities=32%  Similarity=0.346  Sum_probs=42.0

Q ss_pred             CCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEE
Q 047035          103 KLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD  182 (783)
Q Consensus       103 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  182 (783)
                      +...+||++|.+..  ...|..++.|.+|.|..|+|+.+.|. .-.-+++|+.|.|.+|.+........+..|++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            44455555555532  23344555555555555555555442 2223344555555555554444333445555555555


Q ss_pred             CcCCcCc
Q 047035          183 LSANRIS  189 (783)
Q Consensus       183 Ls~n~~~  189 (783)
                      +-+|.++
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.79  E-value=1e-06  Score=89.50  Aligned_cols=62  Identities=23%  Similarity=0.029  Sum_probs=29.8

Q ss_pred             cCCCCCEEEccCCcccCCCC-hhhhhcCCCCcEEEccCccc-cCcccCCc-cCCCCccEEEcccC
Q 047035          342 HQYDFKFLDLSSNKLVGNFP-TWLMQNNTKLEVLRLSNNSF-SGILQLPK-VKHDLLRHLDISNN  403 (783)
Q Consensus       342 ~~~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~~~~~L~~L~L~~n  403 (783)
                      .+..|+.++.+++...+..+ ..+.+++++|+.+-++.|+- +....... .+++.|+.+++..+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            45566666666654433222 23344566666666666642 22111111 34455555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=6.4e-06  Score=93.88  Aligned_cols=151  Identities=21%  Similarity=0.247  Sum_probs=101.5

Q ss_pred             CCCCEEeCCCCCC-CCCCccccc-CCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCC
Q 047035          102 KKLKILNLNYNNF-NDSVLPYLN-TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE  179 (783)
Q Consensus       102 ~~L~~L~Ls~n~~-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  179 (783)
                      .+|++||+++... ....|..++ .+|.|++|.+++-.+....-.+...++++|+.||+|+++++...   +++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS---GISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH---HHhccccHH
Confidence            5788888888654 333445554 57889988888766644322345678888999999998888762   688888888


Q ss_pred             EEECcCCcCcccCC--CcCCCCCCCEEEccCccCcccC--C---cccccCCCCCcEEEccCccccccCCccc-cCCCCCC
Q 047035          180 VLDLSANRISGSLT--ELAPFRNLKVLGMRNNLLNGSV--E---SKGICELKNLTELDLGENNLEGQLPWCL-SDLIGLK  251 (783)
Q Consensus       180 ~L~Ls~n~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~  251 (783)
                      +|.+.+-.+.....  .+.++++|++||+|.......-  .   .+.-..+|+|+.||.+++.+...+-+.+ ...++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88888777765333  7788889999998876543211  1   0112347899999999888775443332 2334555


Q ss_pred             EEEc
Q 047035          252 VLDI  255 (783)
Q Consensus       252 ~L~L  255 (783)
                      .+..
T Consensus       279 ~i~~  282 (699)
T KOG3665|consen  279 QIAA  282 (699)
T ss_pred             hhhh
Confidence            4443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=1.4e-06  Score=74.64  Aligned_cols=11  Identities=36%  Similarity=0.706  Sum_probs=5.1

Q ss_pred             CcEEECcCccc
Q 047035          469 LEYLDVSENNF  479 (783)
Q Consensus       469 L~~L~L~~n~l  479 (783)
                      +..++|+.|++
T Consensus        29 ~h~ldLssc~l   39 (177)
T KOG4579|consen   29 LHFLDLSSCQL   39 (177)
T ss_pred             hhhcccccchh
Confidence            34445555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=7e-05  Score=78.60  Aligned_cols=137  Identities=17%  Similarity=0.203  Sum_probs=87.2

Q ss_pred             ccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCC
Q 047035          487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ  566 (783)
Q Consensus       487 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  566 (783)
                      +..+.+++.|++++|.++ .+|. +  ..+|+.|.+++|.-...+|..+.  ++|+.|.+++|.-...+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence            344688999999999877 4562 2  45799999988765556676552  5789999998843335554      467


Q ss_pred             EEeCCCcccc--cccccccCcCCCcEEEccCCccc--ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCc
Q 047035          567 LLDLSENRLF--GSIASSLNLSSIMHLYLQNNALS--GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR  642 (783)
Q Consensus       567 ~L~Ls~N~l~--~~~p~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  642 (783)
                      .|+++.+...  +.+|     ++|+.|.+.+++..  ..+|..  -.++|++|++++|... .+|..+.  .+|+.|.++
T Consensus       116 ~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCcccccCc-----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            7777766542  2333     45677777543311  111211  1157888888888764 3454443  578888887


Q ss_pred             CCc
Q 047035          643 GNY  645 (783)
Q Consensus       643 ~N~  645 (783)
                      .|.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=4.8e-05  Score=70.17  Aligned_cols=111  Identities=25%  Similarity=0.219  Sum_probs=87.6

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCC
Q 047035           73 FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRN  152 (783)
Q Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~  152 (783)
                      ......+||++|.+...      ..|..++.|.+|.|.+|+|+...|.--..+++|++|.|.+|.|.....-..+..|++
T Consensus        41 ~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            34667899999988654      568889999999999999997777666678899999999998765443345888999


Q ss_pred             CCeEeCCCCCCCCCcCc--cccCCCCCCCEEECcCCcCc
Q 047035          153 LKALNLSWNGISSGATR--LGLGNLTNLEVLDLSANRIS  189 (783)
Q Consensus       153 L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~Ls~n~~~  189 (783)
                      |++|.+-+|.+.....-  ..+..+++|++||.......
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            99999999988765431  34677899999998776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=1e-05  Score=92.31  Aligned_cols=108  Identities=24%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             CCCCEEEccCCcCC-CCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEE
Q 047035          126 TSLTTLNLYYNRIG-GLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVL  204 (783)
Q Consensus       126 ~~L~~L~Ls~n~l~-~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L  204 (783)
                      .+|++|++++...- ...|.+.-..+|.|+.|.+++-.+..........++++|+.||+|+++++.. ..++.+++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            46667777665422 2222222234566666666655544332222344556666666666655522 345555555555


Q ss_pred             EccCccCcccCCcccccCCCCCcEEEccCc
Q 047035          205 GMRNNLLNGSVESKGICELKNLTELDLGEN  234 (783)
Q Consensus       205 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n  234 (783)
                      .+.+-.+...-....+.++++|+.||+|..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            555444432111223444455555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.0001  Score=77.42  Aligned_cols=146  Identities=18%  Similarity=0.210  Sum_probs=97.6

Q ss_pred             cccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcE
Q 047035          511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMH  590 (783)
Q Consensus       511 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~  590 (783)
                      +..+..++.|++++|.++ .+|.   -.++|+.|.+++|.-...+|..+.  ++|+.|++++|.....+|     ++|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-----~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-----ESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-----cccce
Confidence            455789999999999887 4562   234699999998665557776553  689999999994333455     45888


Q ss_pred             EEccCCccc--ccCchhhhcCCCCcEEECcCCccc--cCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035          591 LYLQNNALS--GQIPSTLFRSTELLTLDLRDNKFF--GRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS  666 (783)
Q Consensus       591 L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  666 (783)
                      |+++.+...  +.+|.      +|+.|.+.+++..  ..+|..+  -++|+.|++++|... ..|..+.  .+|+.|+++
T Consensus       117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             EEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            888876643  34554      4667777543311  1122211  168999999999866 3454443  589999998


Q ss_pred             CCc------CcccCCcch
Q 047035          667 HNK------LNGSIPSCF  678 (783)
Q Consensus       667 ~N~------l~g~iP~~~  678 (783)
                      .|.      -.+.+|+.+
T Consensus       186 ~n~~~sLeI~~~sLP~nl  203 (426)
T PRK15386        186 IEQKTTWNISFEGFPDGL  203 (426)
T ss_pred             ccccccccCccccccccc
Confidence            873      234677665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.69  E-value=3.1e-05  Score=53.84  Aligned_cols=36  Identities=33%  Similarity=0.498  Sum_probs=19.3

Q ss_pred             CCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035          635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       635 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34445556666666666666554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.51  E-value=7.8e-05  Score=51.82  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=17.3

Q ss_pred             CCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035          611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 34444555555555555555554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.36  E-value=0.00063  Score=60.85  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             cChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCC
Q 047035          458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN  537 (783)
Q Consensus       458 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~  537 (783)
                      ++...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++++.+++..+ +.......|.+
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence            33333444444444444332 3222223344444444444433 222222233333444444444332 32233333444


Q ss_pred             CCCCcEEECC
Q 047035          538 FSYLDVLLMS  547 (783)
Q Consensus       538 l~~L~~L~L~  547 (783)
                      + +++.+.+.
T Consensus       103 ~-~l~~i~~~  111 (129)
T PF13306_consen  103 C-NLKEINIP  111 (129)
T ss_dssp             --T--EEE-T
T ss_pred             C-CceEEEEC
Confidence            3 44444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.36  E-value=0.00045  Score=61.82  Aligned_cols=125  Identities=16%  Similarity=0.151  Sum_probs=58.1

Q ss_pred             ChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccC
Q 047035          410 PQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMN  489 (783)
Q Consensus       410 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  489 (783)
                      +...+..+++|+.+.+.. .+...-...|.++++|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            334444556666666654 344344456677777777777664 43 56666677777777777765 333333456666


Q ss_pred             CCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCC
Q 047035          490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL  541 (783)
Q Consensus       490 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  541 (783)
                      +++|+.+.+..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            777777777654 444445566666 777777765 3443444555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=9.7e-05  Score=71.32  Aligned_cols=106  Identities=26%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCC--CCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035           72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYN--NFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN  149 (783)
Q Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~  149 (783)
                      .+..|+.|++.+..++..      ..+..+++|++|.++.|  .+.+.++.....+++|++|++++|+|..+.....+..
T Consensus        41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            445555555555544332      44566777777777777  5555555555566777777777777654221123555


Q ss_pred             CCCCCeEeCCCCCCCCCcCc--cccCCCCCCCEEEC
Q 047035          150 LRNLKALNLSWNGISSGATR--LGLGNLTNLEVLDL  183 (783)
Q Consensus       150 l~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L  183 (783)
                      +.+|..|++.+|..+.....  ..+.-+++|++||-
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            66666666666655543221  12334555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=1e-05  Score=77.97  Aligned_cols=87  Identities=30%  Similarity=0.273  Sum_probs=70.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCC
Q 047035          100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE  179 (783)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  179 (783)
                      .+.+.+.|+.-+|.+++  ......++.|++|.||-|.|+..-   .+..|++|++|+|..|.|.+......+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            35677888888888875  344568899999999999998873   4889999999999999998887766778899999


Q ss_pred             EEECcCCcCccc
Q 047035          180 VLDLSANRISGS  191 (783)
Q Consensus       180 ~L~Ls~n~~~~~  191 (783)
                      .|.|..|.-.+.
T Consensus        92 ~LWL~ENPCc~~  103 (388)
T KOG2123|consen   92 TLWLDENPCCGE  103 (388)
T ss_pred             hHhhccCCcccc
Confidence            999988876543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00029  Score=68.16  Aligned_cols=87  Identities=31%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCC--cCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCC
Q 047035          100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYN--RIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTN  177 (783)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  177 (783)
                      .+..|+.|++.+..++.  ...+-.+++|+.|.++.|  ++.+..+. ...++++|++|++++|++..+.....+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34455555555555542  234555667777777777  44433332 23445666666666666665433334555566


Q ss_pred             CCEEECcCCcCc
Q 047035          178 LEVLDLSANRIS  189 (783)
Q Consensus       178 L~~L~Ls~n~~~  189 (783)
                      |..|++..|..+
T Consensus       118 L~~Ldl~n~~~~  129 (260)
T KOG2739|consen  118 LKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcc
Confidence            666666665544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.07  E-value=0.00023  Score=49.33  Aligned_cols=25  Identities=44%  Similarity=0.939  Sum_probs=15.7

Q ss_pred             CCCCCCCcCCCCCCCCcccceeEec
Q 047035           12 ADEILTSWVDDGISDCCDWERVTCD   36 (783)
Q Consensus        12 ~~~~~~~W~~~~~~~~c~w~gv~c~   36 (783)
                      |.+++.+|+.....+||.|.||+|+
T Consensus        19 ~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   19 PSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             C-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cCcccccCCCcCCCCCeeeccEEeC
Confidence            3588999986433689999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.72  E-value=0.00054  Score=39.54  Aligned_cols=22  Identities=45%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             cceeEeccCCcCcccCCccccCc
Q 047035          752 YMSGIDLSYNELTGEIPSEIGEL  774 (783)
Q Consensus       752 ~l~~ldls~N~l~g~ip~~~~~l  774 (783)
                      +|+.||||+|+++ +||+++++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3789999999999 999998765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=4.7e-05  Score=73.52  Aligned_cols=83  Identities=35%  Similarity=0.349  Sum_probs=43.2

Q ss_pred             CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035          150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL  229 (783)
Q Consensus       150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  229 (783)
                      +.+.+.|++-+|.++++..   ..+++.|++|.|+-|+|+. ...+..|++|++|+|..|.|...-...-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHH---HHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            4455566666666665432   3456666666666666652 22344555555555555555422222233445555555


Q ss_pred             EccCccc
Q 047035          230 DLGENNL  236 (783)
Q Consensus       230 ~L~~n~l  236 (783)
                      .|..|.-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            5554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.42  E-value=0.00045  Score=77.65  Aligned_cols=175  Identities=22%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCC-CCCCC----CcccccCCCCCCEEEccCCc-CCCCCCc
Q 047035           71 LPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYN-NFNDS----VLPYLNTLTSLTTLNLYYNR-IGGLNPS  144 (783)
Q Consensus        71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~Ls~n~-l~~~~p~  144 (783)
                      ...+.|+.|.+.++.-...  .........+++|+.|+++++ .....    .......+++|+.|+++++. +++..-.
T Consensus       185 ~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITD--DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hhCchhhHhhhcccccCCh--hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            3478999999987632221  111245667899999999983 22111    12344567999999999988 5554322


Q ss_pred             hhcc-CCCCCCeEeCCCCC-CCCCcCccccCCCCCCCEEECcCCcCccc--C-CCcCCCCCCCEEEccCccCcccCCccc
Q 047035          145 QGLA-NLRNLKALNLSWNG-ISSGATRLGLGNLTNLEVLDLSANRISGS--L-TELAPFRNLKVLGMRNNLLNGSVESKG  219 (783)
Q Consensus       145 ~~l~-~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~  219 (783)
                       .++ .+++|++|.+.+|. +++.........+++|++|+++++.....  . .....+++|+.|.+....         
T Consensus       263 -~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------  332 (482)
T KOG1947|consen  263 -ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------  332 (482)
T ss_pred             -HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------
Confidence             333 38899999988887 66655444456789999999998865421  1 123446666665443322         


Q ss_pred             ccCCCCCcEEEccCcccc---ccCCccccCCCCCCEEEccccc
Q 047035          220 ICELKNLTELDLGENNLE---GQLPWCLSDLIGLKVLDISFNH  259 (783)
Q Consensus       220 l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~  259 (783)
                        .++.++.+.+......   .........+++++.+.+..+.
T Consensus       333 --~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  333 --GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             --CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence              1333444443332221   1122234556666666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.30  E-value=0.00064  Score=76.44  Aligned_cols=63  Identities=27%  Similarity=0.193  Sum_probs=28.9

Q ss_pred             CCCCCCEEECcCCc-CcccC-CCcC-CCCCCCEEEccCcc-CcccCCcccccCCCCCcEEEccCccc
Q 047035          174 NLTNLEVLDLSANR-ISGSL-TELA-PFRNLKVLGMRNNL-LNGSVESKGICELKNLTELDLGENNL  236 (783)
Q Consensus       174 ~l~~L~~L~Ls~n~-~~~~~-~~l~-~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l  236 (783)
                      .+++|+.|+++++. ++... ..++ .+++|++|.+.+|. ++...-......++.|++|++++|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555556655555 22211 1122 25556666555554 33222212233455566666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.09  E-value=0.0019  Score=37.21  Aligned_cols=20  Identities=65%  Similarity=0.850  Sum_probs=11.9

Q ss_pred             CCEEecCCCcCcccCCcchhh
Q 047035          660 LGILDLSHNKLNGSIPSCFVN  680 (783)
Q Consensus       660 L~~L~ls~N~l~g~iP~~~~~  680 (783)
                      |++||+++|+++ .||+.|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 56655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.58  E-value=0.00082  Score=73.58  Aligned_cols=182  Identities=31%  Similarity=0.340  Sum_probs=92.5

Q ss_pred             CCEEeCCCCCCCCCCc----ccccCCCCCCEEEccCCcCCCCCCc---hhccCC-CCCCeEeCCCCCCCCCcCc---ccc
Q 047035          104 LKILNLNYNNFNDSVL----PYLNTLTSLTTLNLYYNRIGGLNPS---QGLANL-RNLKALNLSWNGISSGATR---LGL  172 (783)
Q Consensus       104 L~~L~Ls~n~~~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~---~~l~~l-~~L~~L~L~~n~l~~~~~~---~~l  172 (783)
                      +..|.|.+|.+.....    ..+...++|+.|+++.|.+.+..-.   ..+... ..|++|++..|.++.....   ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5555555555543322    2334455566666666655432110   011221 3455566666655543221   234


Q ss_pred             CCCCCCCEEECcCCcCccc----CC-C----cCCCCCCCEEEccCccCcccCC---cccccCCCC-CcEEEccCcccccc
Q 047035          173 GNLTNLEVLDLSANRISGS----LT-E----LAPFRNLKVLGMRNNLLNGSVE---SKGICELKN-LTELDLGENNLEGQ  239 (783)
Q Consensus       173 ~~l~~L~~L~Ls~n~~~~~----~~-~----l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~-L~~L~L~~n~l~~~  239 (783)
                      .....++.++++.|.+...    ++ .    +....++++|.+.+|.++...-   ...+...+. +.+|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            4456666667766665210    11 1    2345667777777776542110   122333444 56677777766532


Q ss_pred             ----CCccccCC-CCCCEEEcccccCCccCc----hhhcCCCCCCEEeCcCCccc
Q 047035          240 ----LPWCLSDL-IGLKVLDISFNHLSGNLP----SVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       240 ----~~~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~  285 (783)
                          ....+..+ ..+++++++.|.++....    ..+..++.++++.+..|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                22234444 566777777777765433    33445666777777777655

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.24  E-value=0.0022  Score=70.21  Aligned_cols=209  Identities=25%  Similarity=0.222  Sum_probs=135.1

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccc----ccCC-CCCCEEEccCCcCCCCCC---chh
Q 047035           75 ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY----LNTL-TSLTTLNLYYNRIGGLNP---SQG  146 (783)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~p---~~~  146 (783)
                      .++.|.|.+|.+...........+.....|..|++++|.+.+.....    +... ..|++|++..|.++....   ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            37888888888876655555567777888999999999887543322    2232 567778888887765432   134


Q ss_pred             ccCCCCCCeEeCCCCCCCCCcCc---cc----cCCCCCCCEEECcCCcCcccC----C-CcCCCCC-CCEEEccCccCcc
Q 047035          147 LANLRNLKALNLSWNGISSGATR---LG----LGNLTNLEVLDLSANRISGSL----T-ELAPFRN-LKVLGMRNNLLNG  213 (783)
Q Consensus       147 l~~l~~L~~L~L~~n~l~~~~~~---~~----l~~l~~L~~L~Ls~n~~~~~~----~-~l~~l~~-L~~L~L~~n~l~~  213 (783)
                      +.....++.++++.|.+......   ..    +....++++|.+++|.++...    . .+...+. ++.+++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            56678888889988887532211   12    234678899999999876421    1 3455555 7779999988753


Q ss_pred             cCC---cccccCC-CCCcEEEccCcccccc----CCccccCCCCCCEEEcccccCCccCc----hhhcCCCCCCEEeCcC
Q 047035          214 SVE---SKGICEL-KNLTELDLGENNLEGQ----LPWCLSDLIGLKVLDISFNHLSGNLP----SVIANLTSLEYLALSD  281 (783)
Q Consensus       214 ~~~---~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~  281 (783)
                      ...   ...+..+ ..+++++++.|.+...    +...+..+++++.+.++.|.+.....    ..+.....+.++.+.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~  327 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG  327 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence            311   1223444 6789999999998764    34455677899999999998864322    1222334445555554


Q ss_pred             Cc
Q 047035          282 NN  283 (783)
Q Consensus       282 n~  283 (783)
                      +.
T Consensus       328 ~~  329 (478)
T KOG4308|consen  328 TG  329 (478)
T ss_pred             cC
Confidence            43

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.95  E-value=0.39  Score=25.53  Aligned_cols=14  Identities=36%  Similarity=0.577  Sum_probs=5.2

Q ss_pred             ccEEeCCCCCCCcc
Q 047035          323 LKVLQLPNCNLKVI  336 (783)
Q Consensus       323 L~~L~L~~~~l~~i  336 (783)
                      |+.|++++|+++.+
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444555544443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.92  E-value=0.028  Score=53.41  Aligned_cols=85  Identities=18%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEE
Q 047035          584 NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGIL  663 (783)
Q Consensus       584 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  663 (783)
                      .....+.||++.|.+- ..-..|.-++.|..||++.|++ ...|+.++.+..++.+++..|..+ ..|.+++.++.++.+
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3444455555555554 3444566667777888888877 467777777777778888888777 667888888888888


Q ss_pred             ecCCCcCc
Q 047035          664 DLSHNKLN  671 (783)
Q Consensus       664 ~ls~N~l~  671 (783)
                      ++.+|+|+
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            88888875

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.75  E-value=0.3  Score=28.64  Aligned_cols=15  Identities=40%  Similarity=0.623  Sum_probs=6.4

Q ss_pred             CCCCEEecCCCcCcc
Q 047035          658 QKLGILDLSHNKLNG  672 (783)
Q Consensus       658 ~~L~~L~ls~N~l~g  672 (783)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344555555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.83  E-value=0.19  Score=47.12  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhh-hcCCCCcEEECcCc-cccccCCCcccCCCCccEE
Q 047035          419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV-IRCASLEYLDVSEN-NFYGHIFPTYMNLTQLRWL  496 (783)
Q Consensus       419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  496 (783)
                      .++.++-++..|...--+-+.+++.++.|.+.+|+-.+.--...+ .-.++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            466677777666554444556666677777776654321111111 12356777777766 4444333445555666666


Q ss_pred             EccC
Q 047035          497 YLKN  500 (783)
Q Consensus       497 ~L~~  500 (783)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.07  E-value=1.4  Score=26.26  Aligned_cols=21  Identities=38%  Similarity=0.450  Sum_probs=10.8

Q ss_pred             CCCCeeeccCCcCccccChhhh
Q 047035          442 KELFLLDLSRNKFSGDLSATSV  463 (783)
Q Consensus       442 ~~L~~L~L~~n~l~~~i~~~~~  463 (783)
                      ++|+.|++++|++. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            34555555555554 4454443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.07  E-value=1.4  Score=26.26  Aligned_cols=21  Identities=38%  Similarity=0.450  Sum_probs=10.8

Q ss_pred             CCCCeeeccCCcCccccChhhh
Q 047035          442 KELFLLDLSRNKFSGDLSATSV  463 (783)
Q Consensus       442 ~~L~~L~L~~n~l~~~i~~~~~  463 (783)
                      ++|+.|++++|++. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            34555555555554 4454443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=80.31  E-value=1.7  Score=25.99  Aligned_cols=14  Identities=29%  Similarity=0.487  Sum_probs=6.3

Q ss_pred             CCCEEEccCCcCCC
Q 047035          127 SLTTLNLYYNRIGG  140 (783)
Q Consensus       127 ~L~~L~Ls~n~l~~  140 (783)
                      +|++|+|++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=80.31  E-value=1.7  Score=25.99  Aligned_cols=14  Identities=29%  Similarity=0.487  Sum_probs=6.3

Q ss_pred             CCCEEEccCCcCCC
Q 047035          127 SLTTLNLYYNRIGG  140 (783)
Q Consensus       127 ~L~~L~Ls~n~l~~  140 (783)
                      +|++|+|++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.22  E-value=0.042  Score=52.31  Aligned_cols=88  Identities=23%  Similarity=0.233  Sum_probs=58.3

Q ss_pred             CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCC
Q 047035          194 ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS  273 (783)
Q Consensus       194 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  273 (783)
                      ++......+.||++.|++.. .. ..++-++.+..|+++.|++. ..|..+.....++.+++..|..+ ..|.+++..++
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            44555556666666665431 11 34555666777777777766 56777777777777777777766 56777777888


Q ss_pred             CCEEeCcCCccc
Q 047035          274 LEYLALSDNNFQ  285 (783)
Q Consensus       274 L~~L~L~~n~l~  285 (783)
                      ++++++.++.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            888777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	783
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-49
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-49
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-10
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-06
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-04
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		5e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		7e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		9e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  192 bits (488), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 290/625 (46%), Gaps = 79/625 (12%)
Query: 176 TNLEVLDLSANRISG---SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
            +L  LDLS N +SG   +LT L     LK L + +N L+   +  G  +L +L  LDL 
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 233 ENNLEGQ--LPWCLSDLIG-LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
            N++ G   + W LSD  G LK L IS N +SG++   ++   +LE+L +S NNF    P
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217
Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
              L + S L+ L   +S N +L  +     F   +     C             + K L
Sbjct: 218 F--LGDCSALQHL--DISGN-KLSGD-----FSRAI---STCT------------ELKLL 252
Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG-ILQLPKVKHDLLRHLDISNNNLTGM 408
           ++SSN+ VG  P   +++   L+ L L+ N F+G I        D L  LD+S N+  G 
Sbjct: 253 NISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
           +P   G          +S NNF G +P  ++ +M+ L +LDLS N+FSG+L  +     A
Sbjct: 310 VPPFFGSCSLLESLA-LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQ-----LRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
           SL  LD+S NNF G I P   NL Q     L+ LYL+NN FTGKI   L N   LV L +
Sbjct: 369 SLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
           S N LSG IP  +G+ S L  L +  N LEG IP ++   + L+                
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE---------------- 469
Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
                   L L  N L+G+IPS L   T L  + L +N+  G IP  I     L +L L 
Sbjct: 470 -------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGN--GDLYGSGLYIYF 700
            N   G IP  L   + L  LDL+ N  NG+IP+     +F + G    +      Y+Y 
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYI 578
Query: 701 QLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLN---YMSGID 757
           +  G+        + L+      + +          +T   Y  +     +    M  +D
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 758 LSYNELTGEIPSEIGELPKVRALNL 782
           +SYN L+G IP EIG +P +  LNL
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNL 663

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  192 bits (488), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 290/625 (46%), Gaps = 79/625 (12%)
Query: 176 TNLEVLDLSANRISG---SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
            +L  LDLS N +SG   +LT L     LK L + +N L+   +  G  +L +L  LDL 
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 233 ENNLEGQ--LPWCLSDLIG-LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
            N++ G   + W LSD  G LK L IS N +SG++   ++   +LE+L +S NNF    P
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 214
Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
              L + S L+ L   +S N +L  +     F   +     C             + K L
Sbjct: 215 F--LGDCSALQHL--DISGN-KLSGD-----FSRAI---STCT------------ELKLL 249
Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG-ILQLPKVKHDLLRHLDISNNNLTGM 408
           ++SSN+ VG  P   +++   L+ L L+ N F+G I        D L  LD+S N+  G 
Sbjct: 250 NISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
           +P   G          +S NNF G +P  ++ +M+ L +LDLS N+FSG+L  +     A
Sbjct: 307 VPPFFGSCSLLESLA-LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQ-----LRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
           SL  LD+S NNF G I P   NL Q     L+ LYL+NN FTGKI   L N   LV L +
Sbjct: 366 SLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
           S N LSG IP  +G+ S L  L +  N LEG IP ++   + L+ L              
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL-------------- 468
Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
                     L  N L+G+IPS L   T L  + L +N+  G IP  I     L +L L 
Sbjct: 469 ---------ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGN--GDLYGSGLYIYF 700
            N   G IP  L   + L  LDL+ N  NG+IP+     +F + G    +      Y+Y 
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYI 575
Query: 701 QLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLN---YMSGID 757
           +  G+        + L+      + +          +T   Y  +     +    M  +D
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 758 LSYNELTGEIPSEIGELPKVRALNL 782
           +SYN L+G IP EIG +P +  LNL
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNL 660

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 99/215 (46%), Gaps = 8/215 (3%)
Query: 467 ASLEYLDV----SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
           A+L YL+       NN  G I P    LTQL +LY+ + + +G I   L     LV LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL-QLLDLSENRLFGSIAS 581
           S N LSG +P  I +   L  +    N + G IP    +F +L   + +S NRL G I  
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 582 SLNLSSIMHLYLQNNALSGQIPSTLFRSTE-LLTLDLRDNKFFGRIPDQINNHSELRVLL 640
           +    ++  + L  N L G   S LF S +    + L  N     +  ++     L  L 
Sbjct: 193 TFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 641 LRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
           LR N + G +P  L QL+ L  L++S N L G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 30/243 (12%)
Query: 531 IPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN-LSSI 588
           IP  + N  YL+ L +   N+L G IP  I    QL  L ++   + G+I   L+ + ++
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 589 MHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSEL-RVLLLRGNYLQ 647
           + L    NALSG +P ++     L+ +    N+  G IPD   + S+L   + +  N L 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGD-LYGSGLYIYFQLGGLH 706
           G+IP     L  L  +DLS N L G       ++LF  + N   ++ +   + F LG   
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGD-----ASVLFGSDKNTQKIHLAKNSLAFDLG--- 238
Query: 707 SIGTYYN-STLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTG 765
            +G   N + LDL      Y TLPQ                 + L ++  +++S+N L G
Sbjct: 239 KVGLSKNLNGLDLR-NNRIYGTLPQGL---------------TQLKFLHSLNVSFNNLCG 282
Query: 766 EIP 768
           EIP
Sbjct: 283 EIP 285

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 173/405 (42%), Gaps = 76/405 (18%)
Query: 172 LGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGS---VESKGICELKNLT 227
             NLTNLE LDLS+N+I S   T+L     + +L +  +L       ++     E++ L 
Sbjct: 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 227
Query: 228 ELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHL--SGNLPSV-------IANLTSLEY 276
           +L L  NN +    +  C+  L GL+V  +        GNL          + NLT  E+
Sbjct: 228 KLTL-RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286
Query: 277 -LALSDNNFQGEFPL-SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
            LA  D    G   L + LTN S+  ++ + +      + +++   F  + L+L NC   
Sbjct: 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELVNCKFG 341
Query: 335 VIPSFLLHQYD--------------------FKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
             P+  L                         +FLDLS N L  +F     Q++     L
Sbjct: 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTISL 399
Query: 375 RLSNNSFSGILQLPK--VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK----- 427
           +  + SF+G++ +    +  + L HLD  ++NL  M   ++ + ++ L+Y+DIS      
Sbjct: 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 428 -------------------NNFEGN-IPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
                              N+F+ N +P    E++ L  LDLS+ +    LS T+    +
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 518
Query: 468 SLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKNNHFTGKIKAGL 511
           SL+ L++S NNF+    FP Y  L  L+ L    NH     K  L
Sbjct: 519 SLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQEL 562

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 147/370 (39%), Gaps = 84/370 (22%)
Query: 173 GNLTNLEVLDLSANRISGSLTELAPFRNL---KVLGMRNNLLNGSVESKGICELKNLTEL 229
            +  +LE L+L+ N +S    E   F NL   + LG+R+N L   +       L NLT+L
Sbjct: 53  ASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109
Query: 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
           D+ EN +   L +   DL  LK L++  N L        + L SLE L L   N     P
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IP 168
Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL----------PN--------- 330
              L++   L VL L+  +   ++  ++   ++LKVL++          PN         
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 331 -----CNLKVIPSFLL-HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI 384
                CNL  +P   + H    +FL+LS N      P   ++ +   E+LRL      G 
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYN------PISTIEGSMLHELLRLQEIQLVGG 282
Query: 385 LQLPKVKH------DLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
            QL  V+       + LR L++S N LT +                      E ++ +S+
Sbjct: 283 -QLAVVEPYAFRGLNYLRVLNVSGNQLTTL----------------------EESVFHSV 319
Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIR-------------CASLEYLDVSE-NNFYGHIF 484
           G ++ L    L  N  + D     V R             CA+ E++   E  +F   + 
Sbjct: 320 GNLETLI---LDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLL 376
Query: 485 PTYMNLTQLR 494
           P Y    + R
Sbjct: 377 PNYFTCRRAR 386

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 172/405 (42%), Gaps = 76/405 (18%)
Query: 172 LGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGS---VESKGICELKNLT 227
             NLTNLE LDLS+N+I S   T+L     + +L +  +L       ++     E++ L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203
Query: 228 ELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHL--SGNLPSV-------IANLTSLEY 276
           +L L  NN +    +  C+  L GL+V  +        GNL          + NLT  E+
Sbjct: 204 KLTL-RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 277 -LALSDNNFQGEFPL-SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
            LA  D        L + LTN S+  ++ + +      + +++   F  + L+L NC   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELVNCKFG 317
Query: 335 VIPSFLLHQYD--------------------FKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
             P+  L                         +FLDLS N L  +F     Q++     L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSL 375
Query: 375 RLSNNSFSGILQLPK--VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK----- 427
           +  + SF+G++ +    +  + L HLD  ++NL  M   ++ + ++ L+Y+DIS      
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 428 -------------------NNFEGN-IPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
                              N+F+ N +P    E++ L  LDLS+ +    LS T+    +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 494
Query: 468 SLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKNNHFTGKIKAGL 511
           SL+ L++S NNF+    FP Y  L  L+ L    NH     K  L
Sbjct: 495 SLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQEL 538

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 180 VLDLSANRISGSLTELAPFR--NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE 237
           +LDLS N +S    E  P R  NL  L + +N LN  + S+    + NL  LDL  N+L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH 101
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
               +  SDL  L+VL +  NH+     +   ++  L+ L LS N     FP+ L+ + +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGN 160
Query: 298 NL-EVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFL 340
            L +++LL +SSN              K+ +LP  +L+ +P+++
Sbjct: 161 KLPKLMLLDLSSN--------------KLKKLPLTDLQKLPAWV 190

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 53/334 (15%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
           L NLTNL  L L  N+I    T++ P +NL  L       N   +   +  L +L +L  
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
             N +    P  L++L  L+ LDIS N +S    SV+A LT+LE L  ++N      PL 
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 214
Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
           +LTN                           L  L L    LK I + L    +   LDL
Sbjct: 215 ILTN---------------------------LDELSLNGNQLKDIGT-LASLTNLTDLDL 246
Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
           ++N++    P   +   TKL  L+L  N  S I  L  +    L +L+++ N L  + P 
Sbjct: 247 ANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPI 301
Query: 412 NMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470
           +    ++ L Y+ +  NN     P  S+ +++ LF    S NK S D+S  S+    ++ 
Sbjct: 302 SN---LKNLTYLTLYFNNISDISPVSSLTKLQRLF---FSNNKVS-DVS--SLANLTNIN 352
Query: 471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
           +L    N     + P   NLT++  L L +  +T
Sbjct: 353 WLSAGHNQI-SDLTP-LANLTRITQLGLNDQAWT 384

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK--VKHDLLRHLDISNNNLT 406
           L LSSN L  +F     Q++     L+  + SF+G++ +    +  + L HLD  ++NL 
Sbjct: 57  LSLSSNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 407 GMLPQNMGIVIQKLMYIDISK------------------------NNFEGN-IPYSIGEM 441
            M   ++ + ++ L+Y+DIS                         N+F+ N +P    E+
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKN 500
           + L  LDLS+ +    LS T+    +SL+ L++S NNF+    FP Y  L  L+ L    
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSL 232
Query: 501 NHFTGKIKAGL 511
           NH     K  L
Sbjct: 233 NHIMTSKKQEL 243

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
           L NLTNL  L L  N+I    T++ P +NL  L       N   +   +  L +L +L+ 
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
             N +    P  L++L  L+ LDIS N +S    SV+A LT+LE L  ++N      PL 
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 214
Query: 292 LLTN 295
           +LTN
Sbjct: 215 ILTN 218

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
           L NLTNL  L L  N+I    T++ P +NL  L       N   +   +  L +L +L  
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
             N +    P  L++L  L+ LDIS N +S    SV+A LT+LE L  ++N      PL 
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 214
Query: 292 LLTN 295
           +LTN
Sbjct: 215 ILTN 218

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 167/394 (42%), Gaps = 74/394 (18%)
Query: 172 LGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGS---VESKGICELKNLT 227
             NLTNLE LDLS+N+I S   T+L     + +L +  +L       ++     E++ L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203
Query: 228 ELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHL--SGNLPSV-------IANLTSLEY 276
           +L L  NN +    +  C+  L GL+V  +        GNL          + NLT  E+
Sbjct: 204 KLTL-RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 277 -LALSDNNFQGEFPL-SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
            LA  D        L + LTN S+  ++ + +      + +++   F  + L+L NC   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELVNCKFG 317
Query: 335 VIPSFLLHQY--------------------DFKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
             P+  L                         +FLDLS N L  +F     Q++     L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSL 375
Query: 375 RLSNNSFSGILQLPK--VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK----- 427
           +  + SF+G++ +    +  + L HLD  ++NL  M   ++ + ++ L+Y+DIS      
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 428 -------------------NNFEGN-IPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
                              N+F+ N +P    E++ L  LDLS+ +    LS T+    +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 494
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
           SL+ L+++ N         +  LT L+ ++L  N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 13/132 (9%)
Query: 167 ATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
           A+  G+  LTNLE L+L+ N+I    T+++P  NL  L    NL  G+ +   I  L+NL
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQI----TDISPLSNLVKL---TNLYIGTNKITDISALQNL 109
Query: 227 T---ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
           T   EL L E+N+    P  L++L     L++  NH   +L S ++N T L YL ++++ 
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESK 166
Query: 284 FQGEFPLSLLTN 295
            +   P++ LT+
Sbjct: 167 VKDVTPIANLTD 178

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 525
           A  + LD+  N         +  LT+LR LYL +N     + AG+      L  L +++N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95
Query: 526 LLSGHIPCWIGNFSYL---DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
            L   +P  IG F  L     L + +N L+   P   ++  +L  L L  N L  S+   
Sbjct: 96  KLQA-LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKG 151
Query: 583 L--NLSSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKFFGRIPD-QINNHSELRV 638
           +   L+S+  L L NN L  ++P   F + TEL TL L DN    R+P+   ++  +L++
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL-DNNQLKRVPEGAFDSLEKLKM 209
Query: 639 LLLRGN 644
           L L+ N
Sbjct: 210 LQLQEN 215

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 147/334 (44%), Gaps = 54/334 (16%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
           L NLTNL  L L  N+I    T++ P +NL  L       N   +   +  L +L +L+ 
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
           G N +    P  L++L  L+ LDIS N +S    SV+A LT+LE L  ++N      PL 
Sbjct: 159 G-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
           +LTN                           L  L L    LK I + L    +   LDL
Sbjct: 214 ILTN---------------------------LDELSLNGNQLKDIGT-LASLTNLTDLDL 245
Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
           ++N++    P   +   TKL  L+L  N  S I  L  +    L +L+++ N L  + P 
Sbjct: 246 ANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPI 300
Query: 412 NMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470
           +    ++ L Y+ +  NN     P  S+ +++ LF    S NK S D+S  S+    ++ 
Sbjct: 301 SN---LKNLTYLTLYFNNISDISPVSSLTKLQRLF---FSNNKVS-DVS--SLANLTNIN 351
Query: 471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
           +L    N     + P   NLT++  L L +  +T
Sbjct: 352 WLSAGHNQI-SDLTP-LANLTRITQLGLNDQAWT 383

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 42/305 (13%)
Query: 171 GLGNLTNLEVLDLSANRISGSLTEL--APFRNLKVLGMRNNLLNGSVESKGICELKNLTE 228
           G+  + +L+ L L+AN     L ++  A F +L+ L ++ N+    + ++ + +L+NL +
Sbjct: 295 GIEGMNSLKKLVLNANSFD-QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK 353
Query: 229 LDLGENNLEGQLPWC---LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
           LDL  +++E     C   L +L  L+ L++S+N   G           LE L ++  +  
Sbjct: 354 LDLSHSDIEAS-DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH 412
Query: 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ-Y 344
            + P      HS  +        NL L          L+VL L +C L      LL    
Sbjct: 413 VKAP------HSPFQ--------NLHL----------LRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 345 DFKFLDLSSNKLVGN--FPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDI 400
           D + L+L  N         T L+Q    LE+L LS+ +   I Q  +  H L  + HLD+
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQ--QAFHGLRNVNHLDL 506
Query: 401 SNNNLTGMLPQNMGIVIQ-KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
           S+N+LTG    +M  +   K +Y++++ NN     P+ +  + +  +++LS N      S
Sbjct: 507 SHNSLTG---DSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCS 563
Query: 460 ATSVI 464
               I
Sbjct: 564 NIHFI 568

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	783
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-143
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-137
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-50
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  440 bits (1133), Expect = e-143
 Identities = 211/771 (27%), Positives = 322/771 (41%), Gaps = 95/771 (12%)

Query: 16  LTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQE 75
           L  W  +   + C ++ VTC     +V  + L           + GF  ++ SL      
Sbjct: 30  LPDWSSN--KNPCTFDGVTCRD--DKVTSIDLSSK------PLNVGFSAVSSSLL-SLTG 78

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY--LNTLTSLTTLNL 133
           L+ L LS ++ +G            S  L  L+L+ N+ +  V     L + + L  LN+
Sbjct: 79  LESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

Query: 134 YYNRIGGLNPSQGLANLRNLKALNLSWNGISSG--ATRLGLGNLTNLEVLDLSANRISGS 191
             N +       G   L +L+ L+LS N IS       +       L+ L +S N+ISG 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 192 LTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK 251
           + +++   NL+ L + +N  +  +    + +   L  LD+  N L G     +S    LK
Sbjct: 194 V-DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250

Query: 252 VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLR 311
           +L+IS N   G +P     L SL+YL+L++N F GE P  L      L  L L  S N  
Sbjct: 251 LLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL--SGN-- 304

Query: 312 LKTENWIPTFQLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTK 370
                               +    +P F       + L LSSN   G  P   +     
Sbjct: 305 --------------------HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 371 LEVLRLSNNSFSGILQLPKVKHDL---LRHLDISNNNLTGMLPQNMG-IVIQKLMYIDIS 426
           L+VL LS N FSG  +LP+   +L   L  LD+S+NN +G +  N+       L  + + 
Sbjct: 345 LKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT 486
            N F G IP ++    EL  L LS N  SG + + S+   + L  L +  N   G I   
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546
            M +  L  L L  N  TG+I +GL N   L  + +SNN L+G IP WIG    L +L +
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTL 606
           S N   GNIP ++ + R L  LDL+ N   G+I +++   S     +  N ++G+    +
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK---IAANFIAGKRYVYI 578

Query: 607 FRSTELLTLDLRDN--KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILD 664
                        N  +F G   +Q+N  S      +      G           +  LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 665 LSHNKLNGSIPSCFVNMLFWRE---GNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDL--- 718
           +S+N L+G IP    +M +      G+ D+ GS   I  ++G L  +     + LDL   
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS---IPDEVGDLRGL-----NILDLSSN 690

Query: 719 WLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPS 769
            L G     +PQ                 S L  ++ IDLS N L+G IP 
Sbjct: 691 KLDG----RIPQ---------------AMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  424 bits (1092), Expect = e-137
 Identities = 194/676 (28%), Positives = 293/676 (43%), Gaps = 76/676 (11%)

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
           + +TS+   +   N       S  L +L  L++L LS + I+   +  G     +L  LD
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLD 106

Query: 183 LSANRISGSL---TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ 239
           LS N +SG +   T L     LK L + +N L+   +  G  +L +L  LDL  N++ G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 240 LPWCL---SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNH 296
                        LK L IS N +SG++   ++   +LE+L +S NNF    P   L + 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDC 222

Query: 297 SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL 356
           S L+ L                                               D+S NKL
Sbjct: 223 SALQHL-----------------------------------------------DISGNKL 235

Query: 357 VGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV 416
            G+F   +    T+L++L +S+N F G   +P +    L++L ++ N  TG +P  +   
Sbjct: 236 SGDFSRAI-STCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE 476
              L  +D+S N+F G +P   G    L  L LS N FSG+L   ++++   L+ LD+S 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 477 NNFYGHIFPTYMNLT-QLRWLYLKNNHFTGKIKAGLLNS--HGLVVLDISNNLLSGHIPC 533
           N F G +  +  NL+  L  L L +N+F+G I   L  +  + L  L + NN  +G IP 
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 534 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592
            + N S L  L +S N+L G IP  + +  +L+ L L  N L G I   L  + ++  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 593 LQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI 652
           L  N L+G+IPS L   T L  + L +N+  G IP  I     L +L L  N   G IP 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 653 ALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYY 712
            L   + L  LDL+ N  NG+IP+           N  + G     Y  +         +
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAGK---RYVYIKNDGMKKECH 588

Query: 713 NSTLDLWLFGDDYITLPQRARVQFV--TKNRY---EFYNGSNLNYMSGIDLSYNELTGEI 767
            +   L   G     L + +       T   Y         N   M  +D+SYN L+G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 768 PSEIGELPKVRALNLS 783
           P EIG +P +  LNL 
Sbjct: 649 PKEIGSMPYLFILNLG 664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  296 bits (761), Expect = 3e-89
 Identities = 153/540 (28%), Positives = 229/540 (42%), Gaps = 75/540 (13%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL-NTLTSLTTLNLY 134
           L++L++S N F G             K L+ L+L  N F   +  +L     +LT L+L 
Sbjct: 249 LKLLNISSNQFVGPI------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 135 YNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG---- 190
            N   G  P     +   L++L LS N  S       L  +  L+VLDLS N  SG    
Sbjct: 303 GNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

Query: 191 SLTELAPFRNLKVLGMRNNLLNGSV-ESKGICELKNLTELDLGENNLEGQLPWCLSDLIG 249
           SLT L+   +L  L + +N  +G +  +        L EL L  N   G++P  LS+   
Sbjct: 362 SLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309
           L  L +SFN+LSG +PS + +L+ L  L L  N  +GE P  L                 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL---------------MY 464

Query: 310 LRLKTENWIPTFQLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNN 368
           ++           L+ L L   +L   IPS L +  +  ++ LS+N+L G  P W+    
Sbjct: 465 VK----------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRL 513

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
             L +L+LSNNSFSG   +P    D   L  LD++ N   G +P  M           I+
Sbjct: 514 ENLAILKLSNNSFSG--NIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-----KQSGKIA 566

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT 486
            N   G     I           + N                          F G     
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNL-----------------------LEFQGIRSEQ 603

Query: 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546
              L+      + +  + G       N+  ++ LD+S N+LSG+IP  IG+  YL +L +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPST 605
             N + G+IP ++ + R L +LDLS N+L G I  ++  L+ +  + L NN LSG IP  
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
                  +++   + G        +  ++  +  L+++YN  +  +   + ++  L  LN
Sbjct: 607 LSTRNPCNITSRVYGG----HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L +N I G  P + + +LR L  L+LS N +  G     +  LT L  +DLS N +SG +
Sbjct: 663 LGHNDISGSIPDE-VGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 193 TELAPFRNL 201
            E+  F   
Sbjct: 721 PEMGQFETF 729

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  272 bits (697), Expect = 6e-81
 Identities = 124/631 (19%), Positives = 210/631 (33%), Gaps = 50/631 (7%)

Query: 75  ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLY 134
             ++ D S                     + +LNL +N             + LT+L++ 
Sbjct: 5   SHEVADCSHLKLTQV-------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 135 YNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T 193
           +N I  L P      L  LK LNL  N +S  + +      TNL  L L +N I      
Sbjct: 58  FNTISKLEPEL-CQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNN 115

Query: 194 ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL--IGLK 251
                +NL  L + +N L+ S +     +L+NL EL L  N ++      L       LK
Sbjct: 116 PFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 252 VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN-L 310
            L++S N +    P     +  L  L L++          L    +N  +  L +S++ L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 311 RLKTENWI---PTFQLKVLQLPNCNLKVIPSFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQ 366
              +           L +L L   NL V+ +         ++  L  N +   F   L  
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-H 293

Query: 367 NNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
               +  L L  +                    IS  +L  +   +    ++ L ++++ 
Sbjct: 294 GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQ-WLKCLEHLNME 337

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSG---DLSATSVIRCASLEYLDVSENNFYGHI 483
            N+  G        +  L  L LS +  S           +  + L  L++++N      
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 484 FPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLD 542
              +  L  L  L L  N    ++          +  + +S N               L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 543 VLLMSKNHLEG--NIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALS 599
            L++ +  L+   + P      R L +LDLS N +       L  L  +  L LQ+N L+
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 600 --------GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651
                   G     L   + L  L+L  N F     +   +  EL+++ L  N L     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 652 IALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
                   L  L+L  N +       F    
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  254 bits (650), Expect = 3e-74
 Identities = 125/605 (20%), Positives = 210/605 (34%), Gaps = 48/605 (7%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
                 L++L+L  N     ++     +      L  L+L  N+             +L 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS-GATRLGLGNLTNLEVLDLSANRI 188
           TL+L +N +           L NL+ L LS N I +  +  L +   ++L+ L+LS+N+I
Sbjct: 125 TLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 189 SGSLTE-LAPFRNLKVLGMRNNLLNGSVESK--GICELKNLTELDLGENNLEGQLPWCLS 245
                        L  L + N  L  S+  K        ++  L L  + L         
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 246 DL--IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLL 303
            L    L +LD+S+N+L+       A L  LEY  L  NN Q  F  SL     N+  L 
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLN 302

Query: 304 LKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ-YDFKFLDLSSNKLVGNFPT 362
           L    +                  +   +L  I  F        + L++  N + G    
Sbjct: 303 L--KRSFT-------------KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 363 WLMQNNTKLEVLRLSNNSFSGI----LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ 418
                   L+ L LSN+  S           + H  L  L+++ N ++ +        + 
Sbjct: 348 MF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS-WLG 405

Query: 419 KLMYIDISKNNFEGNIPYS-IGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
            L  +D+  N     +       ++ +F + LS NK+   L+  S     SL+ L +   
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRV 464

Query: 478 NFYG--HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS------- 528
                      +  L  L  L L NN+        L     L +LD+ +N L+       
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 529 -GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLS 586
            G    ++   S+L +L +  N  +        +  +L+++DL  N L    AS   N  
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 587 SIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY 645
           S+  L LQ N ++         +   L  LD+R N F           + +         
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

Query: 646 LQGQI 650
           L    
Sbjct: 645 LSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  249 bits (639), Expect = 1e-72
 Identities = 141/693 (20%), Positives = 226/693 (32%), Gaps = 119/693 (17%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
            ++ + ++     + +P  +  T++T LNL +N++  L  +        L +L++ +N I
Sbjct: 6   HEVADCSHLKL--TQVP-DDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTI 61

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
           S     L    L  L+VL+L  N +S                         +  K     
Sbjct: 62  SKLEPEL-CQKLPMLKVLNLQHNELSQ------------------------LSDKTFAFC 96

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            NLTEL L  N+++            L  LD+S N LS         L +L+ L LS+N 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK-VIPSFLLH 342
            Q       L   +N                        LK L+L +  +K   P     
Sbjct: 157 IQA-LKSEELDIFANS----------------------SLKKLELSSNQIKEFSPGCFHA 193

Query: 343 QYDFKFLDLSSNKLVGNFPTWL--MQNNTKLEVLRLSNNSFSGILQ--LPKVKHDLLRHL 398
                 L L++ +L  +    L     NT +  L LSN+  S         +K   L  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 458
           D+S NNL  +   +    + +L Y  +  NN +    +S+  +  +  L+L R+      
Sbjct: 254 DLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS------ 306

Query: 459 SATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV 518
                          +S  +       ++  L  L  L +++N   G           L 
Sbjct: 307 ----------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 519 VLDISNNLLSGHIPC----WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574
            L +SN+  S              S L +L ++KN +        +    L++LDL  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 575 LFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF--FGRIPDQI 630
           +   +       L +I  +YL  N       ++      L  L LR          P   
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGD 690
                L +L L  N +       L  L+KL ILDL HN L                    
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG--------- 527

Query: 691 LYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNL 750
                    + L GL  +       L+L                 F       F +   L
Sbjct: 528 -------PIYFLKGLSHL-----HILNL-------------ESNGFDEIPVEVFKDLFEL 562

Query: 751 NYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                IDL  N L     S       +++LNL 
Sbjct: 563 KI---IDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (438), Expect = 2e-45
 Identities = 95/489 (19%), Positives = 148/489 (30%), Gaps = 84/489 (17%)

Query: 56  YNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFN 115
                        L L    ++ L LS +       +           L +L+L+YNN N
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 116 DSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGL--- 172
                    L  L    L YN I  L     L  L N++ LNL  +      +   L   
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 173 -----GNLTNLEVLDLSANRISGSLTE-LAPFRNLKVLGMRNNLLNGSVESKGICE---L 223
                  L  LE L++  N I G  +       NLK L + N+  +    +         
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLP-SVIANLTSLEYLALSDN 282
             L  L+L +N +        S L  L+VLD+  N +   L       L ++  + LS N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
            +      +      +L+                                          
Sbjct: 441 KYLQLTR-NSFALVPSLQR----------------------------------------- 458

Query: 343 QYDFKFLDLSSNKLVG-NFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
                 L L    L   +      Q    L +L LSNN+ + I        + L  LD+ 
Sbjct: 459 ------LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
           +NNL                   + K+   G   Y +  +  L +L+L  N F   +   
Sbjct: 513 HNNLA-----------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVE 554

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVL 520
                  L+ +D+  NN        + N   L+ L L+ N  T   K     +   L  L
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 521 DISNNLLSG 529
           D+  N    
Sbjct: 615 DMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  167 bits (424), Expect = 2e-43
 Identities = 94/567 (16%), Positives = 165/567 (29%), Gaps = 117/567 (20%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           +    D     L  Q+P  L     + VL+++ N L     +     + L  L +  N  
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY 344
               P                    L            LKVL L +  L  +        
Sbjct: 62  SKLEPELC---------------QKLP----------MLKVLNLQHNELSQLSDKTFAFC 96

Query: 345 DF-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN 403
                L L SN +              L  L LS+N  S      +V+ + L+ L +SNN
Sbjct: 97  TNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 404 NLTGMLPQNMGIVIQ-KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 462
            +  +  + + I     L  +++S N  +   P     +  LF L L+  +    L+   
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK- 214

Query: 463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA--GLLNSHGLVVL 520
                                    +  T +R L L N+  +         L    L +L
Sbjct: 215 ---------------------LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580
           D+S N L+            L+   +  N+++      ++    ++ L+L  +       
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS------- 306

Query: 581 SSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLL 640
                       +   +L      +      L  L++ DN   G   +       L+ L 
Sbjct: 307 -------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 641 LRGNYLQGQIPIAL----CQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGL 696
           L  ++   +              L IL+L+ NK++      F                  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF------------------ 401

Query: 697 YIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGI 756
                   L  +       LDL   G + I                E+    N+     I
Sbjct: 402 ------SWLGHL-----EVLDL---GLNEIG---------QELTGQEWRGLENIFE---I 435

Query: 757 DLSYNELTGEIPSEIGELPKVRALNLS 783
            LSYN+      +    +P ++ L L 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLR 462

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  161 bits (409), Expect = 1e-41
 Identities = 81/386 (20%), Positives = 143/386 (37%), Gaps = 37/386 (9%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY--- 121
           +    F    +L+   L  N       +    S      ++ LNL  +    S+      
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSH----SLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 122 ------LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGA-TRLGLGN 174
                    L  L  LN+  N I G+  +     L NLK L+LS +  S    T     +
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 175 LTN--LEVLDLSANRISGSLTE-LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
           L +  L +L+L+ N+IS   ++  +   +L+VL +  N +   +  +    L+N+ E+ L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSG--NLPSVIANLTSLEYLALSDNNFQGEFP 289
             N          + +  L+ L +    L    + PS    L +L  L LS+NN      
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-IN 496

Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
             +L     LE+L L    N             L  L   + N      FL        L
Sbjct: 497 DDMLEGLEKLEILDL--QHN------------NLARLW-KHANPGGPIYFLKGLSHLHIL 541

Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGML 409
           +L SN      P  + ++  +L+++ L  N+ + +          L+ L++  N +T + 
Sbjct: 542 NLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 410 PQNMGIVIQKLMYIDISKNNFEGNIP 435
            +  G   + L  +D+  N F+    
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  160 bits (408), Expect = 2e-41
 Identities = 82/488 (16%), Positives = 158/488 (32%), Gaps = 76/488 (15%)

Query: 320 TFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN 379
           T   +V    +  L  +P  L    +   L+L+ N+L    P       ++L  L +  N
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 380 SFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIG 439
           + S +      K  +L+ L++ +N L+ +                            +  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQL-------------------------SDKTFA 94

Query: 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLK 499
               L  L L  N     +     ++  +L  LD+S N        T + L  L+ L L 
Sbjct: 95  FCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 500 NNHFTGKIKA--GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 557
           NN           +  +  L  L++S+N +    P        L  L ++   L  ++  
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 558 QINNF---RQLQLLDLSENRLFGSIASS---LNLSSIMHLYLQNNALSGQIPSTLFRSTE 611
           ++        ++ L LS ++L  +  ++   L  +++  L L  N L+     +     +
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 612 LLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY---------LQGQIPIALCQLQKLGI 662
           L    L  N         ++    +R L L+ ++         L      +   L+ L  
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 663 LDLSHNKLNGSIPSCFVNM-----LFWREGNGDLYGSGLYI-YFQLGGLHSIGTYYNSTL 716
           L++  N + G   + F  +     L        L  S   +         S+       L
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYL-------SLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 717 DLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIP-SEIGELP 775
           +L              + +        F    +L     +DL  NE+  E+   E   L 
Sbjct: 387 NL-------------TKNKISKIESDAFSWLGHLEV---LDLGLNEIGQELTGQEWRGLE 430

Query: 776 KVRALNLS 783
            +  + LS
Sbjct: 431 NIFEIYLS 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  251 bits (644), Expect = 4e-74
 Identities = 111/581 (19%), Positives = 197/581 (33%), Gaps = 57/581 (9%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
            K L+L++N           +   L  L+L    I  +       +L +L  L L+ N I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPI 88

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICE 222
            S A       L++L+ L      ++      +   + LK L + +NL+      +    
Sbjct: 89  QSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKV----LDISFNHLSGNLPSVIANLTSLEYLA 278
           L NL  LDL  N ++      L  L  + +    LD+S N ++   P     +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPS 338
           L +N        + +   + LEV  L        + E  +  F    L+           
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRL---VLGEFRNEGNLEKFDKSALEG---------- 253

Query: 339 FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398
             L     +   L+      +    L    T +    L + +   +       +   +HL
Sbjct: 254 --LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHL 309

Query: 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-D 457
           ++ N          +           ++  + +G   +S  ++  L  LDLSRN  S   
Sbjct: 310 ELVNCKFGQFPTLKL------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHG 516
             + S     SL+YLD+S N     +   ++ L QL  L  ++++     +  +  +   
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
           L+ LDIS+              S L+VL M+ N  + N                    +F
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL----------------PDIF 466

Query: 577 GSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSEL 636
                   L ++  L L    L    P+     + L  L++  N FF          + L
Sbjct: 467 T------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 637 RVLLLRGNYLQGQIPIALCQL-QKLGILDLSHNKLNGSIPS 676
           +VL    N++       L      L  L+L+ N    +   
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  251 bits (642), Expect = 8e-74
 Identities = 122/617 (19%), Positives = 214/617 (34%), Gaps = 65/617 (10%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
            + LDLS N            S  S  +L++L+L+             +L+ L+TL L  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
           N I  L      + L +L+ L      ++S      +G+L  L+ L+++           
Sbjct: 86  NPIQSLALG-AFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVA----------- 132

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV--- 252
                       +NL+      +    L NL  LDL  N ++      L  L  + +   
Sbjct: 133 ------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 253 -LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLR 311
            LD+S N ++   P     +  L  L L +N        + +   + LEV  L       
Sbjct: 181 SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL---VLGE 236

Query: 312 LKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKL 371
            + E  +  F    L+             L     +   L+      +    L    T +
Sbjct: 237 FRNEGNLEKFDKSALE------------GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 372 EVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFE 431
               L + +   +       +   +HL++ N          +           ++  + +
Sbjct: 285 SSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKL------KSLKRLTFTSNK 336

Query: 432 GNIPYSIGEMKELFLLDLSRNKFSG-DLSATSVIRCASLEYLDVSENNFYGHIFPTYMNL 490
           G   +S  ++  L  LDLSRN  S     + S     SL+YLD+S N     +   ++ L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 491 TQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 549
            QL  L  ++++     +  +  +   L+ LDIS+              S L+VL M+ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 550 HLEGNI-PVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF 607
             + N  P      R L  LDLS+ +L     ++  +LSS+  L + +N           
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 608 RSTELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIA--LCQLQKLGILD 664
               L  LD   N        ++ +  S L  L L  N           L  ++    L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 665 LSHNKLNGSIPSCFVNM 681
           +   ++  + PS    M
Sbjct: 576 VEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (579), Expect = 6e-65
 Identities = 126/569 (22%), Positives = 215/569 (37%), Gaps = 52/569 (9%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           L    F  F ELQ+LDLS           +  +  S   L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           L+SL  L      +  L  +  + +L+ LK LN++ N I S        NLTNLE LDLS
Sbjct: 99  LSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 185 ANRISGSL-TELAPFRNLKVLGMRNNLLNGSVES--KGICELKNLTELDLGENNLEGQLP 241
           +N+I     T+L     + +L +  +L    +     G  +   L +L L  N     + 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 242 -WCLSDLIGLKVLDISFNHLSGNL------PSVIANLTSL--EYLALSDNNFQGEFPLSL 292
             C+  L GL+V  +                S +  L +L  E   L+  ++  +  + L
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 293 LTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDF------ 346
               +N+    L   S    + +++   F  + L+L NC     P+  L           
Sbjct: 278 FNCLTNVSSFSL--VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 347 --------------KFLDLSSNKLVG-NFPTWLMQNNTKLEVLRLSNNSFSGI----LQL 387
                         +FLDLS N L      +      T L+ L LS N    +    L L
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL 447
            +     L HLD  ++NL  M   ++ + ++ L+Y+DIS  +           +  L +L
Sbjct: 396 EQ-----LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI 507
            ++ N F  +          +L +LD+S+          + +L+ L+ L + +N+F    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGN-FSYLDVLLMSKNHLEGNIPVQ--INNFRQ 564
                  + L VLD S N +       + +  S L  L +++N        Q  +   + 
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

Query: 565 LQLLDLSENRLFGSIASSLNLSSIMHLYL 593
            + L +   R+  +  S      ++ L +
Sbjct: 571 QRQLLVEVERMECATPSDKQGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (534), Expect = 9e-59
 Identities = 124/665 (18%), Positives = 205/665 (30%), Gaps = 148/665 (22%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
            S   L+L +N +  L       +   L+ L+LS   I +        +L++L  L L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTG 85

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
           N I                          +       L +L +L   E NL     + + 
Sbjct: 86  NPIQS------------------------LALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 246 DLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L  LK L+++ N + S  LP   +NLT+LE+L LS N  Q  +  + L     + +L L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNL 180

Query: 305 KVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL 364
                                L L    +  I      +     L L +N    N     
Sbjct: 181 S--------------------LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 365 MQNNTKLEVLRLSNNSFSGILQLPKVKHDL---LRHLDISNNNLTGMLPQNMGIVIQKLM 421
           +Q    LEV RL    F     L K        L +L I    L  +             
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL------------- 267

Query: 422 YIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG 481
                 + +  +I      +  +    L                    ++L++    F  
Sbjct: 268 ------DYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQ 318

Query: 482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL 541
                  +L +L +   K  +         ++   L  LD+S N                
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRN---------------- 357

Query: 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQ 601
                     +G           L+ LDLS N +    ++ L L  + HL  Q++ L   
Sbjct: 358 ------GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 602 IPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI-PIALCQLQK 659
              ++F S   L+ LD+             N  S L VL + GN  Q    P    +L+ 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 660 LGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLW 719
           L  LDLS  +L    P+ F                          L S+       L++ 
Sbjct: 472 LTFLDLSQCQLEQLSPTAF------------------------NSLSSL-----QVLNM- 501

Query: 720 LFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPK-VR 778
                       +   F + + + +   ++L     +D S N +      E+   P  + 
Sbjct: 502 ------------SHNNFFSLDTFPYKCLNSLQV---LDYSLNHIMTSKKQELQHFPSSLA 546

Query: 779 ALNLS 783
            LNL+
Sbjct: 547 FLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  145 bits (369), Expect = 8e-37
 Identities = 69/361 (19%), Positives = 118/361 (32%), Gaps = 40/361 (11%)

Query: 57  NSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND 116
              D +      LF     +    L     +             +   + L L    F  
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQ 318

Query: 117 SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS-SGATRLGLGNL 175
                L +L  LT  +           +    +L +L+ L+LS NG+S  G         
Sbjct: 319 FPTLKLKSLKRLTFTSNK------GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 176 TNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235
           T+L+ LDLS N +    +       L+ L  +++ L    E      L+NL  LD+   +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 236 LEGQLPWCLSDLIGLKVLDISFNHLSGNL-PSVIANLTSLEYLALSDNNFQGEFPLSLLT 294
                    + L  L+VL ++ N    N  P +   L +L +L LS    +   P +   
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 491

Query: 295 NHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSN 354
           + S+L+VL +  S N                L                    + LD S N
Sbjct: 492 SLSSLQVLNM--SHN------------NFFSL---------DTFPYKCLNSLQVLDYSLN 528

Query: 355 KLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQN 412
            ++ +    L    + L  L L+ N F+   +       +   R L +    +    P +
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

Query: 413 M 413
            
Sbjct: 589 K 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (355), Expect = 5e-35
 Identities = 85/577 (14%), Positives = 145/577 (25%), Gaps = 140/577 (24%)

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
           +  + N+T     E N   ++P  L      K LD+SFN L         +   L+ L L
Sbjct: 4   VEVVPNIT-YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
           S    Q         + S+L  L                                     
Sbjct: 60  SRCEIQTIED-GAYQSLSHLSTL------------------------------------- 81

Query: 340 LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD 399
                      L+ N +            + L+ L     + + +   P      L+ L+
Sbjct: 82  ----------ILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKEL----FLLDLSRNKFS 455
           +++N +           +  L ++D+S N  +      +  + ++      LDLS N  +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 456 GDLSATSVIRCASLEYLDVSENNFYGHIFPT-YMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
                    +   L  L +  N    ++  T    L  L    L    F           
Sbjct: 191 F--IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR---------- 238

Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE---GNIPVQINNFRQLQLLDLS 571
                   +   L       +     L +      +L+    +I    N    +    L 
Sbjct: 239 --------NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 572 ENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQIN 631
              +      S       HL L N          L     L     +    F        
Sbjct: 291 SVTIERVKDFS-YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EV 344

Query: 632 NHSELRVLLLRGNYLQ--GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNG 689
           +   L  L L  N L   G    +      L  LDLS N +     +             
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN------------- 391

Query: 690 DLYGSGLYIYFQLGGLHSIGTYYNSTLDL---WLFGDDYITLPQRARVQFVTKNRYEFYN 746
                         GL  +       LD     L      ++               F +
Sbjct: 392 ------------FLGLEQL-----EHLDFQHSNLKQMSEFSV---------------FLS 419

Query: 747 GSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             NL Y   +D+S+             L  +  L ++
Sbjct: 420 LRNLIY---LDISHTHTRVAFNGIFNGLSSLEVLKMA 453

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (261), Expect = 3e-23
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 54  DFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN 113
           D   +   F             L+ LDLS N                     ++ ++ N 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--------------------GVITMSSNF 392

Query: 114 FNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLG 173
                      L  L  L+  ++ +  ++      +LRNL  L++S          +   
Sbjct: 393 LG---------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FN 442

Query: 174 NLTNLEVLDLSANRISGSL--TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
            L++LEVL ++ N    +         RNL  L +    L   +       L +L  L++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNM 501

Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANL-TSLEYLALSDNNFQGEFPL 290
             NN      +    L  L+VLD S NH+  +    + +  +SL +L L+ N+F      
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 291 SLL 293
              
Sbjct: 562 QSF 564

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 13/197 (6%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY-L 122
           +  FS+FL  + L  LD+S  +                  L++L +  N+F ++ LP   
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
             L +LT L+L   ++  L+P+    +L +L+ LN+S N   S  T      L +L+VLD
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLD 524

Query: 183 LSANRISGSLTEL--APFRNLKVLGMRNNLLNGSVESKGICE-LKNLTELDLGENNLEGQ 239
            S N I  S  +       +L  L +  N    + E +   + +K+  +L +    +E  
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 240 LPWCLSDLIGLKVLDIS 256
            P   SD  G+ VL ++
Sbjct: 585 TP---SDKQGMPVLSLN 598

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  231 bits (590), Expect = 1e-64
 Identities = 90/611 (14%), Positives = 192/611 (31%), Gaps = 76/611 (12%)

Query: 89  WNENKDYDSSG--------SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGG 140
           WN NK+ D  G        ++ ++  L+L        V   +  LT L  L+   +    
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 141 LNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN 200
                G   L          + I     ++ L     L + DL  + I+    E+ P + 
Sbjct: 362 SGRLFGDEEL-TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKK 419

Query: 201 LKVLGMRNNLLNG-----SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255
              + +++  +       +  SK I  L  L  +    +          +  +  +  + 
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANS 474

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE 315
            +     N     +NL  L  + L +     + P   L +   L+ L +  + N      
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI--ACN------ 525

Query: 316 NWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLR 375
                 +         +   +          +   +  N L     +  +Q   KL +L 
Sbjct: 526 ------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP 435
             +N    +          L  L +  N +   +P++      ++  +  S N  +  IP
Sbjct: 580 CVHNKVRHLEAFGTNVK--LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IP 635

Query: 436 --YSIGEMKELFLLDLSRNKFSGD----LSATSVIRCASLEYLDVSENNFYGHIFPTYMN 489
             ++   +  +  +D S NK   +      +    +  +   + +S N         +  
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 490 LTQLRWLYLKNNHFT-------GKIKAGLLNSHGLVVLDISNNLLSGHIP--CWIGNFSY 540
            + +  + L NN  T               N++ L  +D+  N L+  +          Y
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

Query: 541 LDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSG 600
           L  + +S N      P Q  N  QL+   +                       + N +  
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ-----------------RDAEGNRILR 796

Query: 601 QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKL 660
           Q P+ +     L+ L +  N    ++ +++    +L +L +  N        ++C   + 
Sbjct: 797 QWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA 853

Query: 661 GILDLSHNKLN 671
           G+  L ++K  
Sbjct: 854 GMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  201 bits (513), Expect = 1e-54
 Identities = 83/559 (14%), Positives = 173/559 (30%), Gaps = 69/559 (12%)

Query: 74  QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNL 133
            EL++L    +           +        +  +    ++      +L+    L   +L
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM---FLDYDQRLNLSDL 403

Query: 134 YYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL--GLGNLTNLEVLDLSANRISGS 191
             + I      + +     +   +     +++  T +   +  LT L+++  + +  +  
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY- 462

Query: 192 LTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK 251
                   + +           + E      LK+LT+++L       QLP  L DL  L+
Sbjct: 463 ---DNIAVDWEDANSDYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 252 VLDISFNHLSG---------NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL 302
            L+I+ N              L         ++   +  NN +     + L     L +L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 303 LLKVSSNLRLKTENWIPTF----QLKVLQLPNCNLKVIPSFLL-HQYDFKFLDLSSNKLV 357
                 + +++    +  F    +L  L+L    ++ IP          + L  S NKL 
Sbjct: 579 DC---VHNKVRH---LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGI-----LQLPKVKHDLLRHLDISNNNLTGMLPQN 412
                +  ++   +  +  S N            +   K      + +S N +    P  
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTE 691

Query: 413 MGIVIQKLMYIDISKNNFE-------GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIR 465
           +      +  I +S N               +      L  +DL  NK +          
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 525
              L  +DVS N F        +N +QL+   +++                    D   N
Sbjct: 752 LPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ------------------RDAEGN 792

Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF----GSIAS 581
            +    P  I     L  L +  N +   +  ++    QL +LD+++N        S+  
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCP 849

Query: 582 SLNLSSIMHLYLQNNALSG 600
            +     + LY +   + G
Sbjct: 850 YIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  191 bits (487), Expect = 5e-51
 Identities = 68/507 (13%), Positives = 145/507 (28%), Gaps = 51/507 (10%)

Query: 213 GSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT 272
           G      +     +T L L     +G++P  +  L  LKVL    +  + +         
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 273 SLEYLALSDNNFQGEFPLSLLTNHSNLEVL------LLKVSSNLRLKTENWIPTFQLKVL 326
           + +      +  +  +    L     L +       + +      +K ++ I     ++ 
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 327 QLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ 386
            L N  +  I   +      + +  +++         +   +   +  +   N       
Sbjct: 432 NLTN-RITFISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 387 LPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG---------NIPYS 437
           L       L  +++ N      LP  +   + +L  ++I+ N              +   
Sbjct: 490 LKD-----LTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 438 IGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY 497
                ++ +  +  N      ++ S+ +   L  LD   N         +    +L  L 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLK 601

Query: 498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP--CWIGNFSYLDVLLMSKNHLEGNI 555
           L  N      +     +  +  L  S+N L   IP      +   +  +  S N +    
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 556 P-----VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALS-------GQI 602
                 +          + LS N +           S I  + L NN ++          
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 603 PSTLFRSTELLTLDLRDNKFFGRIPDQI--NNHSELRVLLLRGNYLQGQIPIALCQLQKL 660
                 +  L T+DLR NK    + D         L  + +  N      P       +L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778

Query: 661 GILDLSH------NKLNGSIPSCFVNM 681
               + H      N++    P+     
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTC 805

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  176 bits (448), Expect = 4e-46
 Identities = 88/535 (16%), Positives = 156/535 (29%), Gaps = 83/535 (15%)

Query: 55  FYNSSDGFPILNFSLFL-PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN 113
                    +    +FL   Q L + DL  +  +   E K                N  N
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 114 FNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQG------------------LANLRNLKA 155
               +   +  LT L  +    +     N +                     +NL++L  
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG------SLTELAP----FRNLKVLG 205
           + L             L +L  L+ L+++ NR           T LA        +++  
Sbjct: 496 VELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 206 MRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLP 265
           M  N L     S  + ++  L  LD   N +   L       + L  L + +N +     
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE 612

Query: 266 SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKV 325
              A    +E L  S N  +    +    +   +  +     S  ++ +E    +  +  
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF---SYNKIGSEGRNISCSMDD 669

Query: 326 LQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI- 384
            +  N                  + LS N++   FPT L    + +  + LSNN  + I 
Sbjct: 670 YKGINA---------------STVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIP 713

Query: 385 ----LQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
                       +   L  +D+  N LT +        +  L  +D+S N F    P   
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
               +L    +                       D   N               L  L +
Sbjct: 773 LNSSQLKAFGIRHQ-------------------RDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 499 KNNHFTGKIKAGLLNSHGLVVLDISNN-LLSGHIPCWIGNF-SYLDVLLMSKNHL 551
            +N    K+   L     L +LDI++N  +S  +        + + VLL  K   
Sbjct: 814 GSNDIR-KVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  126 bits (317), Expect = 7e-30
 Identities = 74/446 (16%), Positives = 136/446 (30%), Gaps = 72/446 (16%)

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGIL-----QLPKVKHDLLRHLDISNNNLTGMLPQN 412
           G+ P   + NN ++  L L+     G +     QL +     L+ L    ++ T      
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTE-----LKVLSFGTHSETVSGRLF 366

Query: 413 MGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV--IRCASLE 470
               +   M  +             +   + L L DL ++  + +     +      SL+
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 471 YLDVSE-NNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 529
              +    N    I      LT+L+ +Y  N+ FT    A           +        
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYE 481

Query: 530 HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL------ 583
           +      N   L  + +        +P  + +  +LQ L+++ NR   +           
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 584 ----NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRV 638
                   I   Y+  N L     S   +   +L  LD   NK   R  +    + +L  
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTD 599

Query: 639 LLLRGNYLQGQIPIALCQ-LQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLY 697
           L L  N ++ +IP   C    ++  L  SHNKL   IP+ F                   
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF------------------- 638

Query: 698 IYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGID 757
                  ++ +      ++D               ++    +N     +       S + 
Sbjct: 639 ---NAKSVYVM-----GSVDF-----------SYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 758 LSYNELTGEIPSEIGELPKVRALNLS 783
           LSYNE+             +  + LS
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILS 705

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (574), Expect = 3e-64
 Identities = 97/581 (16%), Positives = 178/581 (30%), Gaps = 45/581 (7%)

Query: 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
           K  N      N+  +P      S   L   +N +  +  +   + L NL  L+L+   I 
Sbjct: 15  KTYNCENLGLNE--IP-GTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIY 70

Query: 165 SGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELK 224
                    +   L+ L L+AN +                          +    +   K
Sbjct: 71  W-IHEDTFQSQHRLDTLVLTANPLI------------------------FMAETALSGPK 105

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
            L  L   +  +       L +   L+ L +  NH+S            L+ L   +N  
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSN-LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ 343
                   +++      L L ++ N +         +   + L        ++    L  
Sbjct: 166 H-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 344 YDF---KFLDLSSNKLVGNFPTWLMQN-NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD 399
                               P          +E + L  + F  I          L+ LD
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
           ++  +L+ +    +G+    L  + +S N FE     S      L  L +  N    +L 
Sbjct: 285 LTATHLSELPSGLVGL--STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 460 ATSVIRCASLEYLDVSENNFY--GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL 517
              +    +L  LD+S ++            NL+ L+ L L  N               L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 518 VVLDISNNLLSGHIPC-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
            +LD++   L          N   L VL +S + L+ +     +    LQ L+L  N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 577 GSIASSL----NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINN 632
                       L  +  L L    LS            +  +DL  N+      + +++
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 633 HSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS 673
              +  L L  N++   +P  L  L +   ++L  N L+ +
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  215 bits (549), Expect = 8e-61
 Identities = 104/532 (19%), Positives = 193/532 (36%), Gaps = 20/532 (3%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
            + L  ++N          + L +LT L+L   +I  +       +   L  L L+ N +
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPL 93

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICE 222
              A    L     L+ L      IS      L   + L+ L + +N ++ S++      
Sbjct: 94  IFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFP 151

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKV--LDISFNHLSGNLPSVIANLTSLEYLALS 280
            + L  LD   N +       +S L       L+++ N ++G +     +    + L   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFG 210

Query: 281 DNNFQGEFPLSLLTNH-SNLEVLLLKVSSNLRL--KTENWIPTFQLKVLQLPNCNLKVIP 337
                      L  +   +L +   +   +  +       +    ++ + L       I 
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 338 SFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLR 396
           S   H     + LDL++  L    P+ L    + L+ L LS N F  + Q+       L 
Sbjct: 271 SNTFHCFSGLQELDLTATHL-SELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 397 HLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFE--GNIPYSIGEMKELFLLDLSRNKF 454
           HL I  N     L       ++ L  +D+S ++ E        +  +  L  L+LS N+ 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPT-YMNLTQLRWLYLKNNHFTGKIKAGLLN 513
              L   +   C  LE LD++          + + NL  L+ L L ++      +     
Sbjct: 389 LS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLD---VLLMSKNHLEGNIPVQINNFRQLQLLDL 570
              L  L++  N           +   L    +L++S   L         + + +  +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 571 SENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622
           S NRL  S   +L+    ++L L +N +S  +PS L   ++  T++LR N  
Sbjct: 508 SHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  188 bits (480), Expect = 2e-51
 Identities = 85/518 (16%), Positives = 169/518 (32%), Gaps = 47/518 (9%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
           F     L  L L+ N      E     +    K LK L       +      L+   +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL--GLGNLTNLEVLDLSANR 187
           +L L  N I  +   +       LK L+   N I   +      L   TNL  L+L+ N 
Sbjct: 133 SLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGND 190

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNG-SVESKGICELKNLTELDLGENNLEGQLPWCLSD 246
           I+G           + L            +      +++L      + + E   P     
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 247 L--IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           L  + ++ +++  ++      +     + L+ L L+  +        L +    L     
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLS---- 301

Query: 305 KVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ-YDFKFLDLSSNKLVGNFPTW 363
                             LK L L     + +             L +  N       T 
Sbjct: 302 -----------------TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 364 LMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLM 421
            ++N   L  L LS++             +L  L+ L++S N    +  +       +L 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLE 403

Query: 422 YIDISKNNFEGNIPYSI-GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY 480
            +D++    +     S    +  L +L+LS +      S        +L++L++  N+F 
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFP 462

Query: 481 GHI---FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537
                   +   L +L  L L     +   +    +   +  +D+S+N L+      + +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
              +  L ++ NH+   +P  +    Q + ++L +N L
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  182 bits (465), Expect = 2e-49
 Identities = 87/474 (18%), Positives = 161/474 (33%), Gaps = 21/474 (4%)

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
             +   L+   N L        S LI L  LD++   +         +   L+ L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFL 340
                   + L+    L+ L           +          L+ L L + ++  I    
Sbjct: 92  PLIF-MAETALSGPKALKHLFF--IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 341 LHQ-YDFKFLDLSSNKLVGNFPTWLMQ-NNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398
                  K LD  +N +       +          L L+ N  +GI +       + + L
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAFDSAVFQSL 207

Query: 399 DISNNNLTGMLPQNM-GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFL--LDLSRNKFS 455
           +        ++ + +    IQ L        + E   P     + E+ +  ++L ++ F 
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 456 GDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH 515
             +S+ +    + L+ LD++  +    +    + L+ L+ L L  N F    +    N  
Sbjct: 268 N-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 516 GLVVLDIS-NNLLSGHIPCWIGNFSYLDVLLMSKNHLE--GNIPVQINNFRQLQLLDLSE 572
            L  L I  N          + N   L  L +S + +E      +Q+ N   LQ L+LS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 573 NRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI 630
           N        +      +  L L    L  +   + F++   L  L+L  +          
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 631 NNHSELRVLLLRGNYLQGQIPI---ALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
           +    L+ L L+GN+          +L  L +L IL LS   L+      F ++
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (380), Expect = 3e-38
 Identities = 75/365 (20%), Positives = 135/365 (36%), Gaps = 22/365 (6%)

Query: 51  RMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLN 110
            +  F +  D          L    ++ ++L  +YF   + N    +      L+ L+L 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN----TFHCFSGLQELDLT 286

Query: 111 YNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL 170
             + +  +   L  L++L  L L  N+   L      +N  +L  L++  N         
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTG 344

Query: 171 GLGNLTNLEVLDLSANRISGS---LTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT 227
            L NL NL  LDLS + I  S     +L    +L+ L +  N    S++++   E   L 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLE 403

Query: 228 ELDLGENNLEGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
            LDL    L+ +       +L  LKVL++S + L  +   +   L +L++L L  N+F  
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 287 --EFPLSLLTNHSNLEVLLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
                 + L     LE+L+L  S      +    +     +  + L +  L       L 
Sbjct: 464 GNIQKTNSLQTLGRLEILVL--SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISN 402
                +L+L+SN +    P+ L+   ++   + L  N               L     + 
Sbjct: 522 HLKGIYLNLASNHISIILPS-LLPILSQQRTINLRQNPLDCTCSN----IYFLEWYKENM 576

Query: 403 NNLTG 407
             L  
Sbjct: 577 QKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (368), Expect = 1e-36
 Identities = 94/548 (17%), Positives = 164/548 (29%), Gaps = 93/548 (16%)

Query: 251 KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310
           K  +     L+  +P  +    S E L  S N        +                S L
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTF---------------SRL 56

Query: 311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLL-HQYDFKFLDLSSNKLVGNFPTWLMQNNT 369
                       L  L L  C +  I       Q+    L L++N L+    T L     
Sbjct: 57  I----------NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPK 105

Query: 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN 429
            L+ L       S I  +P      L  L + +N+++  +    G   +KL  +D   N 
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNA 164

Query: 430 FEGNIPYSIGEMKELFL--LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTY 487
                   +  +++     L+L+ N  +G          A  + L+         IF   
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGI--EPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 488 MN--LTQLRWLYLKNN---HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD 542
            N  +  L     ++      +  +  GL     +  +++  +            FS L 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 543 VLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQ 601
            L ++  HL   +P  +     L+ L LS N+       S  N  S+ HL ++ N    +
Sbjct: 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 602 IPSTLFRS-TELLTLDLRDNK--FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ 658
           + +    +   L  LDL  +          Q+ N S L+ L L  N        A  +  
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 659 KLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDL 718
           +L +LDL+  +L                                  LH +       L+L
Sbjct: 401 QLELLDLAFTRLKVKDAQSP-----------------------FQNLHLL-----KVLNL 432

Query: 719 WLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIG---ELP 775
                        +       +   F     L +   ++L  N        +      L 
Sbjct: 433 -------------SHSLLDISSEQLFDGLPALQH---LNLQGNHFPKGNIQKTNSLQTLG 476

Query: 776 KVRALNLS 783
           ++  L LS
Sbjct: 477 RLEILVLS 484

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  222 bits (569), Expect = 3e-63
 Identities = 90/623 (14%), Positives = 193/623 (30%), Gaps = 87/623 (13%)

Query: 89  WNENKDYDSSG--------SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGG 140
           WN NK+ D  G        S+ ++  L+L     +  V   +  LT L  L L  +    
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 141 LNPSQG---LANLRNLKALNLSWNGISSGA-TRLGLGNLTNLEVLDLSANRISGSLTEL- 195
                G   ++   + +                    + ++L    ++++    S+ +  
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255
                   +G  +N +     SK +  L  L +  +G +    +           +  + 
Sbjct: 180 RITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENS 232

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE 315
            +            NL  L  + + +     + P  L      ++++ +  + N R  + 
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINV--ACN-RGISG 288

Query: 316 NWIPTFQLKVLQLPNC-NLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
             +      +   P    +++             + +  N L        +Q   KL +L
Sbjct: 289 EQLKDDWQALADAPVGEKIQI-------------IYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 375 RLSNNSFSGIL----QLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
               N   G L       K     L  L+++ N +T  +P N     +++  +  + N  
Sbjct: 336 ECLYNQLEGKLPAFGSEIK-----LASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL 389

Query: 431 EGNIP--YSIGEMKELFLLDLSRNKFSGDLSAT------SVIRCASLEYLDVSENNFYGH 482
           +  IP  +    +  +  +D S N+              +  +  ++  +++S N     
Sbjct: 390 KY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 483 IFPTYMNLTQLRWLYLKNNHFTG-------KIKAGLLNSHGLVVLDISNNLLSGHIPCW- 534
               +   + L  + L  N  T               N++ L  +D+  N L+     + 
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 535 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQ 594
                YL  + +S N      P Q  N   L+   +                       Q
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ-----------------RDAQ 550

Query: 595 NNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIAL 654
            N    + P  +     L  L +  N    ++ ++I     + VL ++ N         +
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYV 607

Query: 655 CQLQKLGILDLSHNKLNGSIPSC 677
           C   + G+  L ++K    I  C
Sbjct: 608 CPYIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  199 bits (508), Expect = 5e-55
 Identities = 71/491 (14%), Positives = 152/491 (30%), Gaps = 65/491 (13%)

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGN----LPSVIANLTSLEYL 277
               +T L L      G++P  +  L  L+VL +  +    N     P  I+   S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 278 ALSDNNFQGEFPLSL-LTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVI 336
                ++Q  F       + S+L    +      +   ++   T +   +   + N+  +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 337 PSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLR 396
              ++                           TKL    + N+ F               
Sbjct: 199 SKAVM-------------------------RLTKLRQFYMGNSPFVAENICE-----AWE 228

Query: 397 HLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 456
           + +                 ++ L  +++        +P  +  + E+ L++++ N+   
Sbjct: 229 NENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 457 DLSA-------TSVIRCASLEYLDVSENNF-YGHIFPTYMNLTQLRWLYLKNNHFTGKIK 508
                              ++ + +  NN     +  +   + +L  L    N   GK+ 
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 509 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP--VQINNFRQLQ 566
           A   +   L  L+++ N ++     + G    ++ L  + N L+  IP      +   + 
Sbjct: 348 A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405

Query: 567 LLDLSENRLFGSIASSL--------NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR 618
            +D S N +      +            ++  + L NN +S          + L +++L 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 619 DNKF-------FGRIPDQINNHSELRVLLLRGNYLQGQIP-IALCQLQKLGILDLSHNKL 670
            N              +   N   L  + LR N L           L  L  +DLS+N  
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 671 NGSIPSCFVNM 681
           +   P+  +N 
Sbjct: 526 SK-FPTQPLNS 535

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (449), Expect = 5e-47
 Identities = 71/463 (15%), Positives = 133/463 (28%), Gaps = 84/463 (18%)

Query: 76  LQILDLSGNYFDGWNENKDYDSS---------------GSSKKLKILNLNYNNFNDSVLP 120
           L+   +  + F   N  + +++                 + K L  + +        +  
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 121 YLNTLTSLTTLNLYYNRIGGLNPSQG-------LANLRNLKALNLSWNGISSGATRLGLG 173
           +L  L  +  +N+  NR       +              ++ + + +N + +      L 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 174 NLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICE-LKNLTELDLG 232
            +  L +L+   N++ G L        L  L +  N +     +   C   + +  L   
Sbjct: 328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFA 385

Query: 233 ENNLEGQLP--WCLSDLIGLKVLDISFNHLSG-------NLPSVIANLTSLEYLALSDNN 283
            N L+  +P  +    +  +  +D S+N +          L        ++  + LS+N 
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ 343
               FP  L +  S L  + L    N             L   ++P  +LK       + 
Sbjct: 445 ISK-FPKELFSTGSPLSSINL--MGN------------MLT--EIPKNSLKDENENFKNT 487

Query: 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI----LQLPKVKHDLLRHLD 399
           Y    +DL  NKL      +       L  + LS NSFS      L         L+   
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST-----LKGFG 542

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
           I N                     D   N      P  I     L  L +  N       
Sbjct: 543 IRNQ-------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583

Query: 460 ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH 502
                   ++  LD+ +N              +     L  + 
Sbjct: 584 KI----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (421), Expect = 2e-43
 Identities = 68/494 (13%), Positives = 157/494 (31%), Gaps = 63/494 (12%)

Query: 322 QLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWL---MQNNTKLEVLRLS 377
           ++  L L        +P  +    + + L L S+    N   +    +  N   E  +  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 378 NNSFSG--ILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP 435
              +    +   P+     L    I+++     + ++  I   K   I    NN    + 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-LKDTQIGQLSNNITF-VS 199

Query: 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495
            ++  + +L    +  + F           C + E  +      Y      + NL  L  
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVA------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL--------SGHIPCWIGNFSYLDVLLMS 547
           + + N     K+   L     + +++++ N                       + ++ + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 548 KNHL-EGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTL 606
            N+L    +   +   ++L +L+   N+L G + +  +   +  L L  N ++    +  
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFC 373

Query: 607 FRSTELLTLDLRDNKFFGRIPD--QINNHSELRVLLLRGNYLQG-------QIPIALCQL 657
             + ++  L    NK    IP+     + S +  +    N +          +     + 
Sbjct: 374 GFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 658 QKLGILDLSHNKLNGSIPSCFVNMLFWRE----GN---GDLYGSGLYIYFQLGGLHSIGT 710
             +  ++LS+N+++      F            GN        S           + +  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL-- 490

Query: 711 YYNSTLDLWLFGDDYIT-LPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPS 769
              +++DL     + +T L    R              + L Y+ GIDLSYN  +   P+
Sbjct: 491 ---TSIDL---RFNKLTKLSDDFRA-------------TTLPYLVGIDLSYNSFSK-FPT 530

Query: 770 EIGELPKVRALNLS 783
           +      ++   + 
Sbjct: 531 QPLNSSTLKGFGIR 544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (281), Expect = 9e-26
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 19/225 (8%)

Query: 76  LQILDLSGNYFDGWNENKDY---DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
           +  +D S N     +         +      +  +NL+ N  +       +T + L+++N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 133 LYYNRIGGLNPSQG------LANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSAN 186
           L  N +  +  +          N   L +++L +N ++  +       L  L  +DLS N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 187 RISGSLTELAPFRNLKVLGMRNNL------LNGSVESKGICELKNLTELDLGENNLEGQL 240
             S   T+      LK  G+RN               +GI    +LT+L +G N++   +
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRK-V 581

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
              +     + VLDI  N       S +          L  +  Q
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (255), Expect = 1e-22
 Identities = 36/303 (11%), Positives = 86/303 (28%), Gaps = 51/303 (16%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG----HIPCWIGNFSYLDVL 544
           +  ++  L L+    +G++   +     L VL + ++          P  I      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 545 LMSKNHLEGNIPVQI--NNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQ 601
              + H +          +F  L    ++ +    SI  S         +   +N ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 602 IPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661
           +   + R T+L    + ++ F      +   +                  +    L+ L 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLT 252

Query: 662 ILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLF 721
            +++ +      +P+                         L  +  I    N  +     
Sbjct: 253 DVEVYNCPNLTKLPTFL---------------------KALPEMQLINVACNRGISGEQL 291

Query: 722 GDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNEL-TGEIPSEIGELPKVRAL 780
            DD+  L              +   G  +     I + YN L T  + + + ++ K+  L
Sbjct: 292 KDDWQALA-------------DAPVGEKIQI---IYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 781 NLS 783
              
Sbjct: 336 ECL 338

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 22/270 (8%), Positives = 68/270 (25%), Gaps = 58/270 (21%)

Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580
           +   ++        + +   +  L +      G +P  I    +L++L L  +    +  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 581 SSL-----NLSSIMHLYLQNNALSGQIPSTLFR--STELLTLDLRDNKFFGRIPDQINNH 633
                      S                    R   ++L+   +  +     I       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYG 693
            +   +    N +   +  A+ +L KL    + ++                         
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC----------------- 224

Query: 694 SGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYM 753
                  +     +         +   +                           NL  +
Sbjct: 225 -------EAWENENSEYAQQYKTEDLKWD--------------------------NLKDL 251

Query: 754 SGIDLSYNELTGEIPSEIGELPKVRALNLS 783
           + +++       ++P+ +  LP+++ +N++
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (564), Expect = 6e-63
 Identities = 103/570 (18%), Positives = 178/570 (31%), Gaps = 71/570 (12%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
           +S   ++L +N +  L      +N   L+ L+LS   I +   +     L +L  L L+ 
Sbjct: 32  SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTG 89

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
           N I                         S        L +L  L   E  L     + + 
Sbjct: 90  NPIQ------------------------SFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 246 DLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            LI LK L+++ N +    LP+  +NLT+L ++ LS N  Q    ++ L        + L
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNL 184

Query: 305 KVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL 364
                                L +    +  I            L L  N    N     
Sbjct: 185 S--------------------LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 365 MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLR--------HLDISNNNLTGMLPQNMGIV 416
           +QN   L V RL    F     L   +  ++            ++  N            
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH-C 283

Query: 417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE 476
           +  +  + ++  +        + +  +   L + R +     +         L+ L ++ 
Sbjct: 284 LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTM 337

Query: 477 NNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA--GLLNSHGLVVLDISNNLLSGHIPCW 534
           N   G I    + L  L +L L  N  +         L ++ L  LD+S N     +   
Sbjct: 338 NK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN 394

Query: 535 IGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592
                 L  L    + L+         +  +L  LD+S              L+S+  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 593 LQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651
           +  N+      S +F + T L  LDL   +         +    L++L +  N L     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 652 IALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
               QL  L  LD S N++  S        
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (555), Expect = 1e-61
 Identities = 104/577 (18%), Positives = 189/577 (32%), Gaps = 61/577 (10%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
            K ++L++N          +  + L  L+L    I  +   +    L +L  L L+ N I
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPI 92

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISGSLTE-LAPFRNLKVLGMRNNLLNGSVESKGICE 222
            S +       LT+LE L     +++   +  +     LK L + +N ++          
Sbjct: 93  QSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLK----VLDISFNHLSGNLPSVIANLTSLEYLA 278
           L NL  +DL  N ++      L  L         LD+S N +          +  L  L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210

Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPS 338
           L  N        + L N + L V  L        K E  +  F+  +++           
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRL---ILGEFKDERNLEIFEPSIMEG---------- 257

Query: 339 FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398
             L         L+      +           +  + L+  S   +  +PK  H   + L
Sbjct: 258 --LCDVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIKYLEDVPK--HFKWQSL 312

Query: 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-D 457
            I    L      ++      L  + ++ N   G+I +    +  L  LDLSRN  S   
Sbjct: 313 SIIRCQLKQFPTLDL----PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSG 366

Query: 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHG 516
             + S +   SL +LD+S N     +   +M L +L+ L  +++      +     +   
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
           L+ LDIS                          + + +          L  L ++ N   
Sbjct: 426 LLYLDISYT------------------------NTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 577 GSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634
            +  S++  N +++  L L    L             L  L++  N          N   
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671
            L  L    N ++    I     + L   +L++N + 
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (522), Expect = 4e-57
 Identities = 118/526 (22%), Positives = 193/526 (36%), Gaps = 30/526 (5%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           L    F  F ELQ LDLS    +   +     +      L  L L  N          + 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           LTSL  L     ++  L  S  +  L  LK LN++ N I S        NLTNL  +DLS
Sbjct: 103 LTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 185 ANRISG-SLTELAPFRNLKVLGMRNNLLNGSVES--KGICELKNLTELDLGENNLEGQLP 241
            N I   ++ +L   R    + +  ++    ++       +   L EL L  N     + 
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 242 W-CLSDLIGLKVLDISFNHLSGNL------PSVIANLTSLEYLALSDN-NFQGEFPLSLL 293
             CL +L GL V  +               PS++  L  +                +   
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 294 TNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS 353
              +N+  + L  +       E+    F+ + L +  C LK  P+  L     K L L+ 
Sbjct: 282 HCLANVSAMSL--AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTM 337

Query: 354 NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI--LQLPKVKHDLLRHLDISNNNLTGMLPQ 411
           NK   +F    + +   L  L LS N+ S         +  + LRHLD+S N    M   
Sbjct: 338 NKGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 412 NMGIVIQKLMYIDISKNNFEGNIPYS-IGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470
            MG  +++L ++D   +  +    +S    +++L  LD+S             +   SL 
Sbjct: 395 FMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLN 451

Query: 471 YLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 529
            L ++ N+F  +     + N T L +L L                H L +L++S+N L  
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 530 HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
                      L  L  S N +E +  +  +  + L   +L+ N +
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 5e-39
 Identities = 100/575 (17%), Positives = 172/575 (29%), Gaps = 118/575 (20%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           +   +DL  N L+    +  S+   L+ LD+S   +          L  L  L L+ N  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ- 343
           Q  F     +  ++LE L+                             L  + SF + Q 
Sbjct: 93  QS-FSPGSFSGLTSLENLVAV------------------------ETKLASLESFPIGQL 127

Query: 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI----LQLPKVKHDLLRHLD 399
              K L+++ N +          N T L  + LS N    I    LQ  +    +   LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
           +S N +                            I     +  +L  L L  N  S ++ 
Sbjct: 188 MSLNPID--------------------------FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 460 ATSVIRCASLEYLDVSENNFYGHI------FPTYMNLTQLRW--LYLKNNHFTGKIKAGL 511
            T +   A L    +    F                L  +      L   +         
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 512 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571
                +  + ++   +  ++     +F     L + +  L+        +   L+ L L+
Sbjct: 282 HCLANVSAMSLAGVSIK-YLEDVPKHFK-WQSLSIIRCQLKQ---FPTLDLPFLKSLTLT 336

Query: 572 ENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTL--FRSTELLTLDLRDNKFFGRIPDQ 629
            N+        + L S+ +L L  NALS     +     +  L  LDL  N     +   
Sbjct: 337 MNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394

Query: 630 INNHSELRVLLLRGNYLQGQIPI-ALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGN 688
                EL+ L  + + L+      A   L+KL  LD+S+          F+         
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-------- 446

Query: 689 GDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGS 748
                        L  L+++    NS  D                          F N +
Sbjct: 447 -------------LTSLNTLKMAGNSFKDN--------------------TLSNVFANTT 473

Query: 749 NLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
           NL +   +DLS  +L          L +++ LN+S
Sbjct: 474 NLTF---LDLSKCQLEQISWGVFDTLHRLQLLNMS 505

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  136 bits (345), Expect = 8e-34
 Identities = 67/336 (19%), Positives = 114/336 (33%), Gaps = 25/336 (7%)

Query: 46  SLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLK 105
            L    + +F  +       +   F     +  + L+G         K  +      K +
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI------KYLEDVPKHFKWQ 310

Query: 106 ILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS 165
            L++          P L+ L  L +L L  N+            L +L  L+LS N +S 
Sbjct: 311 SLSIIRCQLKQ--FPTLD-LPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSF 364

Query: 166 -GATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELK 224
            G          +L  LDLS N              L+ L  +++ L    E      L+
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPS-VIANLTSLEYLALSDNN 283
            L  LD+   N +         L  L  L ++ N    N  S V AN T+L +L LS   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
            + +    +      L++L +  S N    L + ++   + L  L      ++     L 
Sbjct: 485 LE-QISWGVFDTLHRLQLLNM--SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 342 HQYDF-KFLDLSSNKLV-----GNFPTWLMQNNTKL 371
           H      F +L++N +        F  W+ +    L
Sbjct: 542 HFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (295), Expect = 2e-27
 Identities = 76/475 (16%), Positives = 147/475 (30%), Gaps = 47/475 (9%)

Query: 324 KVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG 383
              Q  +  L  +P  +      K +DLS N L     ++   N ++L+ L LS      
Sbjct: 14  ITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIET 70

Query: 384 ILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKE 443
           I          L +L ++ N +           +  L  +   +        + IG++  
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 444 LFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW----LYLK 499
           L  L+++ N               +L ++D+S N            L +       L + 
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 500 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW-IGNFSYLDVLLMSKNHLEGNIPVQ 558
            N     I+        L  L +  N  S +I    + N + L V  +     +    ++
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 559 INNFR--------QLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRS 609
           I             +    L+    F         L+++  + L   ++   +       
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK-H 306

Query: 610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK 669
            +  +L +   +   + P    +   L+ L L  N  +G I      L  L  LDLS N 
Sbjct: 307 FKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNA 361

Query: 670 LNGSIPSCFVNMLFWREGNGDLYGSGLY-IYFQLGGLHSIGTYYNSTLDLWLFGDDYITL 728
           L+ S    + ++      + DL  +G   +     GL  +         L         +
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH-------LDFQHSTLKRV 414

Query: 729 PQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                         EF    +L  +  +D+SY     +       L  +  L ++
Sbjct: 415 T-------------EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  189 bits (483), Expect = 2e-54
 Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 4/257 (1%)

Query: 423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI-RCASLEYLDVS-ENNFY 480
            D     + G +  +  +   +  LDLS           S +     L +L +   NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 540
           G I P    LTQL +LY+ + + +G I   L     LV LD S N LSG +P  I +   
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 541 LDVLLMSKNHLEGNIPVQINNFRQL-QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS 599
           L  +    N + G IP    +F +L   + +S NRL G I  +    ++  + L  N L 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK 659
           G              + L  N     +  ++     L  L LR N + G +P  L QL+ 
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 660 LGILDLSHNKLNGSIPS 676
           L  L++S N L G IP 
Sbjct: 270 LHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (459), Expect = 3e-51
 Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 8/284 (2%)

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTG--MLPQNMGIVIQKLMYIDISK-NNFEG 432
             N ++ G+L     +   + +LD+S  NL     +P ++   +  L ++ I   NN  G
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVG 91

Query: 433 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQ 492
            IP +I ++ +L  L ++    SG +    + +  +L  LD S N   G + P+  +L  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 493 LRWLYLKNNHFTGKIKAGLLNSHGLV-VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
           L  +    N  +G I     +   L   + IS N L+G IP    N + L  + +S+N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 552 EGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTE 611
           EG+  V   + +  Q + L++N L   +       ++  L L+NN + G +P  L +   
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 612 LLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC 655
           L +L++  N   G IP Q  N     V     N      P+  C
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  160 bits (406), Expect = 7e-44
 Identities = 70/320 (21%), Positives = 124/320 (38%), Gaps = 59/320 (18%)

Query: 472 LDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG--KIKAGLLNSHGLVVLDISN-NLLS 528
            D     + G +  T     ++  L L   +      I + L N   L  L I   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSS 587
           G IP  I   + L  L ++  ++ G IP  ++  + L  LD S N L G++  S+ +L +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 588 IMHLYLQNNALSGQIPSTLFRSTELLT-LDLRDNKFFGRIPDQINNHSELRVLLLRGNYL 646
           ++ +    N +SG IP +    ++L T + +  N+  G+IP    N + L  + L  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 647 QGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLH 706
           +G   +     +    + L+ N L   +                          ++G   
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------------------KVGLSK 244

Query: 707 SIGTYYNSTLDLW---LFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNEL 763
           ++     + LDL    ++G    TLPQ                 + L ++  +++S+N L
Sbjct: 245 NL-----NGLDLRNNRIYG----TLPQ------------GL---TQLKFLHSLNVSFNNL 280

Query: 764 TGEIPSEIGELPKVRALNLS 783
            GEIP   G L +      +
Sbjct: 281 CGEIPQG-GNLQRFDVSAYA 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 1e-41
 Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 41/303 (13%)

Query: 157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT---ELAPFRNLKVLGMRN-NLLN 212
           N +W G+              +  LDLS   +         LA    L  L +   N L 
Sbjct: 35  NRTWLGVLCDT----DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 213 GSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT 272
           G +    I +L  L  L +   N+ G +P  LS +  L  LD S+N LSG LP  I++L 
Sbjct: 91  GPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 273 SLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCN 332
           +L  +    N   G  P S  +       + +  S N RL  +  IP          N N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTI--SRN-RLTGK--IPP------TFANLN 198

Query: 333 LKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH 392
           L              F+DLS N L G+       ++   + + L+ NS +    L KV  
Sbjct: 199 L-------------AFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAF--DLGKVG- 241

Query: 393 DL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLS 450
               L  LD+ NN + G LPQ +   ++ L  +++S NN  G IP   G ++   +   +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

Query: 451 RNK 453
            NK
Sbjct: 300 NNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (355), Expect = 5e-37
 Identities = 78/300 (26%), Positives = 124/300 (41%), Gaps = 30/300 (10%)

Query: 13  DEILTSWVDDGISDCCD--WERVTCDATA--GQVIQLSLDFARMFDFYNSSDGFPILNFS 68
              L+SW+    +DCC+  W  V CD      +V  L L          +      +  S
Sbjct: 21  PTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDL-------SGLNLPKPYPIPSS 71

Query: 69  LF-LPFQELQILDLSG-NYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLT 126
           L  LP+  L  L + G N   G        +     +L  L + + N + ++  +L+ + 
Sbjct: 72  LANLPY--LNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 127 SLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNL-EVLDLSA 185
           +L TL+  YN + G  P   +++L NL  +    N I SGA     G+ + L   + +S 
Sbjct: 126 TLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISR 183

Query: 186 NRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244
           NR++G +    A   NL  + +  N+L G   S      KN  ++ L +N+L   L   +
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGK-V 240

Query: 245 SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
                L  LD+  N + G LP  +  L  L  L +S NN  GE P     N    +V   
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 35/173 (20%), Positives = 51/173 (29%), Gaps = 48/173 (27%)

Query: 614 TLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI--ALCQLQKLGILDLSH-NKL 670
           T D  +  + G + D       +  L L G  L    PI  +L  L  L  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 671 NGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQ 730
            G IP                          L  LH +   + +     + G     +P 
Sbjct: 90  VGPIPPAIAK---------------------LTQLHYLYITHTN-----VSG----AIPD 119

Query: 731 RARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                              L     +D SYN L+G +P  I  LP +  +   
Sbjct: 120 ------------FLSQIKTLVT---LDFSYNALSGTLPPSISSLPNLVGITFD 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 74  QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNL 133
           +  Q + L+ N         D    G SK L  L+L  N    ++   L  L  L +LN+
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 134 YYNRIGGLNPSQGLANLRNLKALNLSWN 161
            +N + G  P  G  NL+       + N
Sbjct: 276 SFNNLCGEIPQGG--NLQRFDVSAYANN 301

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  188 bits (478), Expect = 5e-50
 Identities = 106/585 (18%), Positives = 204/585 (34%), Gaps = 41/585 (7%)

Query: 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
           +I    + N   + +P    L +   L L +N I  +  S     L  L+ L L      
Sbjct: 7   RIAFYRFCNL--TQVP--QVLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTP 61

Query: 165 SGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLL-NGSVESKGICE 222
               +    NL NL +LDL +++I            +L  L +    L +  ++      
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 223 LKNLTELDLGENNLEG-QLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT--SLEYLAL 279
           LK LT LDL +N +    L      L  LK +D S N +       +  L   +L + +L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
           + N+      +      +    ++L++   L + + N                 +     
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEI---LDV-SGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 340 LLHQYDFKFLDLSSNKLVGNFPTWLM-QNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398
           L H           + +             + +  L LS+     +          L+ L
Sbjct: 238 LAHH--IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 458
           +++ N +   +       +  L  +++S N        +   + ++  +DL +N  +  +
Sbjct: 296 NLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-II 353

Query: 459 SATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV 518
              +      L+ LD+ +N        T   +  +  ++L  N     +    L ++   
Sbjct: 354 QDQTFKFLEKLQTLDLRDNA-----LTTIHFIPSIPDIFLSGNKLV-TLPKINLTAN--- 404

Query: 519 VLDISNNLLSG-HIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLF 576
           ++ +S N L    I  ++    +L +L++++N        Q  +    L+ L L EN L 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 577 GSIASSL------NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630
            +  + L       LS +  LYL +N L+   P      T L  L L  N+    +    
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND 523

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
              + L +L +  N L             L +LD++HNK      
Sbjct: 524 LPAN-LEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (444), Expect = 1e-45
 Identities = 105/526 (19%), Positives = 182/526 (34%), Gaps = 36/526 (6%)

Query: 174 NLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
            L   E L LS N I   + +       L++L + +     +++ +    L NL  LDLG
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSGNL--PSVIANLTSLEYLALSDNNFQGEFPL 290
            + +    P     L  L  L + F  LS  +       NL +L  L LS N  +  +  
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 291 SLLTNHSNLEVLLLK--VSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPS--FLLHQYDF 346
                 ++L+ +         +       +    L    L   +L    S  +      F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
           + + L    + GN  T  +  N         +N+ S       +    +       +N+ 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGN--------FSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 407 GMLPQNM--GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI 464
               QN   G+    + ++D+S              +K+L +L+L+ NK +  ++  +  
Sbjct: 254 -DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFY 311

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
              +L+ L++S N         +  L ++ ++ L+ NH              L  LD+ +
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASS 582
           N L+      I     +  + +S N L   +P          L+ LSENRL     +   
Sbjct: 372 NALTT-----IHFIPSIPDIFLSGNKLV-TLP---KINLTANLIHLSENRLENLDILYFL 422

Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNH-----SEL 636
           L +  +  L L  N  S             L  L L +N        ++        S L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 637 RVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
           +VL L  NYL    P     L  L  L L+ N+L     +     L
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (427), Expect = 2e-43
 Identities = 113/546 (20%), Positives = 204/546 (37%), Gaps = 52/546 (9%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           +  S F   ++LQ+L+L   Y     +    ++  +   L+IL+L  +            
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 125 LTSLTTLNLYYNRIGGLN-PSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
           L  L  L LY+  +           NL+ L  L+LS N I S       G L +L+ +D 
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 184 SANRIS----GSLTELAPFRNLKVLGMRNNLLN-----GSVESKGICELKNLTELDLGEN 234
           S+N+I       L  L   + L    +  N L         +         L  LD+  N
Sbjct: 156 SSNQIFLVCEHELEPLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 235 NLEGQLPWCLSDLIG------------LKVLDISFNHLSGNLPSVIANL--TSLEYLALS 280
                +    S+ I             +      F+++     +  A L  +S+ +L LS
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 281 DNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFL 340
                      +     +L+VL L  +   ++  E +     L+VL L    L  + S  
Sbjct: 275 HGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 341 LHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD 399
            +      ++DL  N +         +   KL+ L L +N+ + I  +P      +  + 
Sbjct: 334 FYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS-----IPDIF 387

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG-NIPYSIGEMKELFLLDLSRNKFSGDL 458
           +S N L  +   N+         I +S+N  E  +I Y +  +  L +L L++N+FS   
Sbjct: 388 LSGNKLVTLPKINL-----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 459 SATSVIRCASLEYLDVSENNFYGHIFP-----TYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
              +     SLE L + EN              +  L+ L+ LYL +N+          +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573
              L  L +++N L+  +       + L++L +S+N L        + F  L +LD++ N
Sbjct: 503 LTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLA---PNPDVFVSLSVLDITHN 557

Query: 574 RLFGSI 579
           +     
Sbjct: 558 KFICEC 563

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (375), Expect = 4e-37
 Identities = 91/480 (18%), Positives = 164/480 (34%), Gaps = 37/480 (7%)

Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
                 NL  Q+P  L+     + L +SFN++     S    L  L+ L L         
Sbjct: 9   AFYRFCNLT-QVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 289 PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK---VIPSFLLHQYD 345
                 N  NL +L L  S    L  + +   F L  L+L  C L    +   +  +   
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 346 FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ--LPKVKHDLLRHLDISNN 403
              LDLS N++   +          L+ +  S+N    + +  L  ++   L    ++ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 404 NLTGMLPQNMGIVIQK-----LMYIDISKNNFEGNIP------------YSIGEMKELFL 446
           +L   +  + G  +       L  +D+S N +  +I             +S+     +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 447 LDLSRNKFSG-DLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG 505
                +     D +  + +  +S+ +LD+S    +      +  L  L+ L L  N    
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 506 KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 565
                      L VL++S NLL             +  + + KNH+            +L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG- 624
           Q LDL +N     + +   + SI  ++L  N L   +P     +     + L +N+    
Sbjct: 365 QTLDLRDNA----LTTIHFIPSIPDIFLSGNKLV-TLPKINLTAN---LIHLSENRLENL 416

Query: 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQ-LQKLGILDLSHNKLNGSIPSCFVNMLF 683
            I   +     L++L+L  N                L  L L  N L  +  +     +F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (357), Expect = 9e-35
 Identities = 94/555 (16%), Positives = 182/555 (32%), Gaps = 47/555 (8%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           +L    F   + L  LDLS N       +    S G    LK ++ + N         L 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELE 169

Query: 124 TLT--SLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
            L   +L+  +L  N +           +   + + L    +S        GN   +++ 
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--------GNGWTVDIT 221

Query: 182 DLSANRISGS-LTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLEGQ 239
              +N IS S    L    ++   G   +N+ +    +       ++  LDL    +   
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281

Query: 240 LPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL 299
                  L  LKVL++++N ++         L +L+ L LS N    E   S       +
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKV 340

Query: 300 EVLLLKVSSNLRLKTENWIPTFQ-LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVG 358
             + L+  +++ +  +      + L+ L L +  L  I            + LS NKL  
Sbjct: 341 AYIDLQ-KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD----IFLSGNKL-- 393

Query: 359 NFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH-DLLRHLDISNNNLTGMLPQNMGIVI 417
                L + N    ++ LS N    +  L  +     L+ L ++ N  +           
Sbjct: 394 ---VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 418 QKLMYIDISKNNFEGNIPYSIGE-----MKELFLLDLSRNKFSGDLSATSVIRCASLEYL 472
             L  + + +N  +      +       +  L +L L+ N  +  L         +L  L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGL 509

Query: 473 DVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP 532
            ++ N     +         L  L +  N          ++   L VLDI++N       
Sbjct: 510 SLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFI---- 560

Query: 533 CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLY 592
           C     ++++ L  +   + G       +   +     S   LF       +   ++   
Sbjct: 561 CECELSTFINWLNHTNVTIAGP----PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSL 616

Query: 593 LQNNALSGQIPSTLF 607
             +  +   +  TLF
Sbjct: 617 KFSLFIVCTVTLTLF 631

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (309), Expect = 6e-29
 Identities = 79/400 (19%), Positives = 145/400 (36%), Gaps = 43/400 (10%)

Query: 41  QVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGS 100
           +++ +S +   +    N S+          +    +       +     + +++  +  +
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK--DPDQNTFAGLA 264

Query: 101 SKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160
              ++ L+L++            TL  L  LNL YN+I  +        L NL+ LNLS+
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSY 323

Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKG 219
           N +    +      L  +  +DL  N I+            L+ L +R+N L        
Sbjct: 324 NLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------T 376

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDL-IGLKVLDISFNHLSGNLP-SVIANLTSLEYL 277
           I  + ++ ++ L  N L       L  + +   ++ +S N L        +  +  L+ L
Sbjct: 377 IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 278 ALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIP 337
            L+ N F         + + +LE L L   + L+L  E  +     + L     +L+V  
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLG-ENMLQLAWETELCWDVFEGLS----HLQV-- 484

Query: 338 SFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRH 397
                      L L+ N L  + P  +  + T L  L L++N  + +          L  
Sbjct: 485 -----------LYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLEI 530

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYS 437
           LDIS N L    P         L  +DI+ N F      S
Sbjct: 531 LDISRNQLLAPNPDVF----VSLSVLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (293), Expect = 6e-27
 Identities = 78/494 (15%), Positives = 157/494 (31%), Gaps = 64/494 (12%)

Query: 323 LKVLQLPNCNLKVIPSFLLHQYDF-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
            + L L    ++ + +      +  + L+L S            +N   L +L L ++  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV-IQKLMYIDISKNNFEG-NIPYSIG 439
             +          L  L +    L+  + ++     ++ L  +D+SKN      +  S G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 440 EMKELFLLDLSRNKFSG-DLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
           ++  L  +D S N+           ++  +L +  ++ N+ Y  +   +           
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP----- 200

Query: 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 558
                          +  L +LD+S N  +  I    GNFS         N +  +    
Sbjct: 201 -------------FRNMVLEILDVSGNGWTVDIT---GNFS---------NAISKSQAFS 235

Query: 559 INNFRQLQLLDLSENRLFG---SIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLT 614
           +     +       + +     +  + L  SS+ HL L +  +   + S +F +  +L  
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKV 294

Query: 615 LDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSI 674
           L+L  NK      +       L+VL L  N L          L K+  +DL  N +    
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 675 PSCFVNMLFWRE--------GNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYI 726
              F  +   +                S   I+     L ++     +   + L  +   
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 727 TLPQRARVQFVTKNRYEFYNGSNLNYMSG------------IDLSYNELTGEIPSEIGE- 773
            L     +  V   +    N +  +  SG            + L  N L     +E+   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 774 ----LPKVRALNLS 783
               L  ++ L L+
Sbjct: 475 VFEGLSHLQVLYLN 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.2 bits (216), Expect = 8e-18
 Identities = 67/288 (23%), Positives = 105/288 (36%), Gaps = 26/288 (9%)

Query: 62  FPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY 121
             I+    F   ++LQ LDL  N     +             +  + L+ N      LP 
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIH---------FIPSIPDIFLSGNKL--VTLPK 398

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
           +N   +   ++L  NR+  L+    L  + +L+ L L+ N  SS +         +LE L
Sbjct: 399 IN--LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 182 DLSANRISGSLTE------LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235
            L  N +  +              +L+VL + +N LN S+       L  L  L L  N 
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNR 515

Query: 236 LEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTN 295
           L       L     L++LDIS N L    P V     SL  L ++ N F  E  LS   N
Sbjct: 516 LTVLSHNDLPAN--LEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFIN 570

Query: 296 HSNL-EVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
             N   V +    +++     +      L  L    C+ + +   L  
Sbjct: 571 WLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKF 618

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (465), Expect = 1e-49
 Identities = 116/569 (20%), Positives = 192/569 (33%), Gaps = 78/569 (13%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
            S   L+L +N +  L       +   L+ L+LS   I +   GA      +L++L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLI 82

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           L+ N I                         S+       L +L +L   E NL     +
Sbjct: 83  LTGNPIQ------------------------SLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 243 CLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
            +  L  LK L+++ N + S  LP   +NLT+LE+L LS N  Q     + L     + +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPL 177

Query: 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP 361
           L L                     L L    +  I      +     L L +N    N  
Sbjct: 178 LNLS--------------------LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 362 TWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLR--------HLDISNNNLTGMLPQNM 413
              +Q    LEV RL    F     L K     L            ++  +       ++
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 414 GIVIQKLMYIDISKNNFEGNIPYSI-GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYL 472
              +  +    +     E    +S     + L L++    +F         ++  SL+ L
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-------LKLKSLKRL 330

Query: 473 DVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGH 530
             + N   G    + ++L  L +L L  N  +  G        +  L  LD+S N +   
Sbjct: 331 TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL-NLSSI 588
           +         L+ L    ++L+      +  + R L  LD+S      +       LSS+
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 589 MHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
             L +  N+        +F     L  LDL   +     P   N+ S L+VL +  N L+
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPS 676
                   +L  L  + L  N  + S P 
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  179 bits (456), Expect = 2e-48
 Identities = 110/528 (20%), Positives = 191/528 (36%), Gaps = 36/528 (6%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
            K L+L++N           +   L  L+L    I  +       +L +L  L L+ N I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI 88

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICE 222
            S A       L++L+ L      ++      +   + LK L + +NL+      +    
Sbjct: 89  QSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKV----LDISFNHLSGNLPSVIANLTSLEYLA 278
           L NL  LDL  N ++      L  L  + +    LD+S N ++  +         L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPS 338
           L +N        + +   + LEV  L +           +  F    L+           
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---GNLEKFDKSALE----------- 252

Query: 339 FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398
             L     +   L+      +    L    T +    L + +   +       +   +HL
Sbjct: 253 -GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHL 309

Query: 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-D 457
           ++ N          +    + L  +  + N   G   +S  ++  L  LDLSRN  S   
Sbjct: 310 ELVNCKFGQFPTLKL----KSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHG 516
             + S     SL+YLD+S N     +   ++ L QL  L  ++++     +  +  +   
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRL 575
           L+ LDIS+              S L+VL M+ N  + N    I    R L  LDLS+ +L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 576 FGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622
                ++  +LSS+  L + +N L         R T L  + L  N +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (427), Expect = 1e-44
 Identities = 115/525 (21%), Positives = 189/525 (36%), Gaps = 51/525 (9%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           L    F  F ELQ+LDLS        +  +  +  S   L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           L+SL  L      +  L  +  + +L+ LK LN++ N I S        NLTNLE LDLS
Sbjct: 99  LSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 185 ANRISG-SLTELAPFRNLKVLGMRNNLLNGSVES--KGICELKNLTELDLGENNLEGQLP 241
           +N+I     T+L     + +L +  +L    +     G  +   L +L L  N     + 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 242 W-CLSDLIGLKVLDI------SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLT 294
             C+  L GL+V  +      +  +L     S +  L +L             +   ++ 
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIID 276

Query: 295 NHSNLEVLLLKVSSNLRLKT-ENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS 353
             + L  +      ++ ++  +++   F  + L+L NC     P+  L     K L  +S
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTS 334

Query: 354 NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQ 411
           NK    F      +   LE L LS N  S      +       L++LD+S N +      
Sbjct: 335 NKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----- 386

Query: 412 NMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEY 471
                                 +  +   +++L  LD   +        +  +   +L Y
Sbjct: 387 ---------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 472 LDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGH 530
           LD+S  +        +  L+ L  L +  N F       +      L  LD+S   L   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
            P    + S L VL M+ N L+       +    LQ + L  N  
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 1e-28
 Identities = 110/581 (18%), Positives = 181/581 (31%), Gaps = 99/581 (17%)

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
           +  + N+T     E N   ++P  L      K LD+SFN L         +   L+ L L
Sbjct: 4   VEVVPNIT-YQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
           S    Q         + S+L  L+L  +    L    +     L+ L     NL  + +F
Sbjct: 60  SRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 340 LLHQYDF-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI----LQLPKVKHDL 394
            +      K L+++ N +          N T LE L LS+N    I    L++      L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
              LD+S N +                            I     +   L  L L  N  
Sbjct: 179 NLSLDLSLNPMNF--------------------------IQPGAFKEIRLHKLTLRNNFD 212

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGH---------IFPTYMNLTQLRWLYLKNNHFTG 505
           S ++  T +   A LE   +    F                  NLT   +     +++  
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 506 KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 565
            I         +    + +  +   +  +  NF     L +                + L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-WQHLELVNCKFGQ---FPTLKLKSL 327

Query: 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS--GQIPSTLFRSTELLTLDLRDNKFF 623
           + L  + N+  G+  S ++L S+  L L  N LS  G    + F +T L  LDL  N   
Sbjct: 328 KRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 624 GRIPDQINNHSELRVLLLRGNYLQGQIP-IALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
             +        +L  L  + + L+          L+ L  LD+SH     +    F    
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-- 443

Query: 683 FWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRY 742
                              L  L  +    NS  + +L                      
Sbjct: 444 -------------------LSSLEVLKMAGNSFQENFL--------------------PD 464

Query: 743 EFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
            F    NL +   +DLS  +L    P+    L  ++ LN++
Sbjct: 465 IFTELRNLTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (272), Expect = 8e-25
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 15/250 (6%)

Query: 57  NSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND 116
              D +      LF     +    L           KD+  +   + L+++N  +  F  
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 117 SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS-GATRLGLGNL 175
                   L SL  L    N+ G         +L +L+ L+LS NG+S  G         
Sbjct: 322 ------LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 176 TNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235
           T+L+ LDLS N +    +       L+ L  +++ L    E      L+NL  LD+   +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 236 LEGQLPWCLSDLIGLKVLDISFNHLSGNLPS-VIANLTSLEYLALSDNNFQGEFPLSLLT 294
                    + L  L+VL ++ N    N    +   L +L +L LS    + +   +   
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 491

Query: 295 NHSNLEVLLL 304
           + S+L+VL +
Sbjct: 492 SLSSLQVLNM 501

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  176 bits (449), Expect = 1e-47
 Identities = 103/532 (19%), Positives = 193/532 (36%), Gaps = 51/532 (9%)

Query: 98  SGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALN 157
           SG +  +K L+L++N         L    +L  L L  +RI  +       +L +L+ L+
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLD 80

Query: 158 LSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN---LKVLGMRNNLLNGS 214
           LS N +SS  +    G L++L+ L+L  N    +L   + F N   L+ L + N      
Sbjct: 81  LSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSL 274
           +       L +L EL++   +L       L  +  +  L +  +  +  L      L+S+
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 275 EYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
            YL L D N        L  +  +  +  L    +               +       L 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS--------------VLTDESFNELL 244

Query: 335 VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL 394
            +  ++L   + +F D + N L                    + +    + +L KV+   
Sbjct: 245 KLLRYILELSEVEFDDCTLNGL-----------------GDFNPSESDVVSELGKVETVT 287

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
           +R L I    L       +  +++K+  I +  +            +K L  LDLS N  
Sbjct: 288 IRRLHIPQFYLFY-DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 455 SGDLSATSVI--RCASLEYLDVSENNFY--GHIFPTYMNLTQLRWLYLKNNHFTGKIKAG 510
             +    S       SL+ L +S+N+           + L  L  L +  N F   +   
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDL 570
                 +  L++S+  +             L+VL +S N+L+ +  +      +LQ L +
Sbjct: 406 CQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYI 458

Query: 571 SENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622
           S N+L  ++  +     ++ + +  N L         R T L  + L  N +
Sbjct: 459 SRNKL-KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 4e-39
 Identities = 95/584 (16%), Positives = 185/584 (31%), Gaps = 100/584 (17%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
             + +    +F  + +P      ++ +L+L +N+I  +     L    NL+ L L  + I
Sbjct: 7   SGVCDGRSRSF--TSIPS-GLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRI 62

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICE 222
           ++        +L +LE LDLS N +S  S +   P  +LK L +  N       +     
Sbjct: 63  NTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 223 LKNLTELDLGENNLEGQLP-WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
           L NL  L +G      ++     + L  L  L+I    L       + ++  + +L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
           +              S++  L L+ ++  R +            ++       V+     
Sbjct: 182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
           ++       L   + +         + T   +   + +    + +L KV+   +R L I 
Sbjct: 241 NEL------LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
              L       +  +++K+  I +  +            +K L  LDLS N    +    
Sbjct: 295 QFYLFY-DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 462 SVI--RCASLEYLDVSENNFY--GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL 517
           S       SL+ L +S+N+           + L  L  L +  N F   +         +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG 577
             L++S+  +                             V+    + L++LD+S N L  
Sbjct: 413 RFLNLSSTGIRV---------------------------VKTCIPQTLEVLDVSNNNL-- 443

Query: 578 SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELR 637
             + SL L  +  LY+  N L   +P                                  
Sbjct: 444 -DSFSLFLPRLQELYISRNKLK-TLPDASL------------------------------ 471

Query: 638 VLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
                                 L ++ +S N+L       F  +
Sbjct: 472 -------------------FPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (353), Expect = 5e-35
 Identities = 103/496 (20%), Positives = 171/496 (34%), Gaps = 60/496 (12%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           +    F     L+ LDLS N                     + +L+ + F          
Sbjct: 65  IEGDAFYSLGSLEHLDLSDN--------------------HLSSLSSSWFGP-------- 96

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           L+SL  LNL  N    L  +    NL NL+ L +      S   R+    LT+L  L++ 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 185 ANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC 243
           A  +       L   R++  L +  +     +       L ++  L+L + NL       
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLL 303
           L        +       S         L  L    L  +  +         + +   +  
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-------FDDCTLNGLGD 268

Query: 304 LKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY-DFKFLDLSSNKLVGNFPT 362
              S +  +     + T  ++ L +P   L    S +       K + + ++K+    P 
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPC 327

Query: 363 WLMQNNTKLEVLRLSNNSFSGI-LQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQ- 418
              Q+   LE L LS N      L+    K     L+ L +S N+L   + +   I++  
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL 386

Query: 419 -KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA--SLEYLDVS 475
             L  +DIS+N F   +P S    +++  L+LS            V  C   +LE LDVS
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI------RVVKTCIPQTLEVLDVS 439

Query: 476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI 535
            NN     F   + L +L+ LY+  N       A L     L+V+ IS N L        
Sbjct: 440 NNNL--DSFS--LFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIF 493

Query: 536 GNFSYLDVLLMSKNHL 551
              + L  + +  N  
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (281), Expect = 6e-26
 Identities = 78/420 (18%), Positives = 138/420 (32%), Gaps = 46/420 (10%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSS--GSSKKLKILNLNYNNFNDSVLPY 121
           +   SLF     LQ L +            +           L  L +   +  +     
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNV-----ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 122 LNTLTSLTTLNLYYNRIGGLNPS--QGLANLRNLKALNLSWNGISSGA-------TRLGL 172
           L ++  +  L L+ +    L       L+++R L+  + +               + +  
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 173 GNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLL-------NGSVESKGICELKN 225
                  + D S N +   L  +     ++      N L       +  V   G  E   
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 226 LTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
           +  L + +  L   L    S L  +K + +  + +     S   +L SLE+L LS+N   
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 286 GEF--PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF-----QLKVLQLPNCNLKVIPS 338
            E+    +      +L+ L+L   S   L++             L  L +       +P 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVL---SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 339 FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI-LQLPKVKHDLLRH 397
                   +FL+LSS  +              LEVL +SNN+     L LP+     L+ 
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNLDSFSLFLPR-----LQE 455

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
           L IS N L   LP     +   L+ + IS+N  +         +  L  + L  N +   
Sbjct: 456 LYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.1 bits (242), Expect = 4e-21
 Identities = 76/457 (16%), Positives = 140/457 (30%), Gaps = 68/457 (14%)

Query: 348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG 407
             D  S     + P+ L      ++ L LS N  + I          L+ L + ++ +  
Sbjct: 9   VCDGRSRSFT-SIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN- 63

Query: 408 MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
            +  +    +  L ++D+S N+         G +  L  L+L  N +      +      
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 468 SLEYLDVSENNFYGHIFPTY-MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
           +L+ L +     +  I       LT L  L +K           L +   +  L +  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN-----------NFRQLQLLDLSENRL 575
            +  +  +    S +  L +   +L       +             FR   L D S N L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 576 FGSIASSLNLSSIMHLYLQNNALSGQIPSTL--------FRSTELLTLDLRDNKFFGRIP 627
              +   L LS +       N L    PS            +  +  L +     F  + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 628 DQINNHSELRVLLLRGNYLQGQIPIALCQ-LQKLGILDLSHNKLNGSIPSCFVNMLFWRE 686
              +   +++ + +  + +   +P +  Q L+ L  LDLS N +                
Sbjct: 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC------ 356

Query: 687 GNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYN 746
                           G   S+      TL L            +  ++ + K       
Sbjct: 357 ---------------KGAWPSL-----QTLVL-----------SQNHLRSMQKTGEILLT 385

Query: 747 GSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             NL     +D+S N     +P       K+R LNLS
Sbjct: 386 LKNLTS---LDISRNTFH-PMPDSCQWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 51/261 (19%), Positives = 89/261 (34%), Gaps = 18/261 (6%)

Query: 47  LDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKI 106
            D         +     +++    +    ++ L +   Y                +K+K 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST----VYSLLEKVKR 314

Query: 107 LNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIG--GLNPSQGLANLRNLKALNLSWNGIS 164
           + +  +        +   L SL  L+L  N +    L  S       +L+ L LS N + 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 165 S-GATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
           S   T   L  L NL  LD+S N              ++ L + +  +         C  
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI----RVVKTCIP 430

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
           + L  LD+  NNL+         L  L+ L IS N L   LP   +    L  + +S N 
Sbjct: 431 QTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQ 484

Query: 284 FQGEFPLSLLTNHSNLEVLLL 304
            +   P  +    ++L+ + L
Sbjct: 485 LK-SVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 26/150 (17%)

Query: 68  SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN---FNDSVLPYLNT 124
            + L  + L  LD+S N F     +   DS    +K++ LNL+          +   L  
Sbjct: 381 EILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435

Query: 125 L--------------TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL 170
           L                L  L +  N++  L  +   +    L  + +S N + S    +
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA---SLFPVLLVMKISRNQLKSVPDGI 492

Query: 171 GLGNLTNLEVLDLSANRISGSLTELAPFRN 200
               LT+L+ + L  N    S   +     
Sbjct: 493 -FDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  167 bits (424), Expect = 8e-45
 Identities = 116/517 (22%), Positives = 188/517 (36%), Gaps = 69/517 (13%)

Query: 63  PILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL 122
           PI          E     L            D  S     ++  L  +        +  +
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGV 64

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
             L +LT +N   N++  + P   L NL  L  + ++ N I+       L NLTNL  L 
Sbjct: 65  EYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLT 118

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           L  N+I+  +  L    NL  L + +N ++       +  L +L +L  G N +    P 
Sbjct: 119 LFNNQIT-DIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFG-NQVTDLKP- 172

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL 302
            L++L  L+ LDIS N +S    SV+A LT+LE L  ++N      PL +LTN       
Sbjct: 173 -LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN------- 222

Query: 303 LLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPT 362
                               L  L L    LK I +      +   LDL++N++    P 
Sbjct: 223 --------------------LDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAP- 260

Query: 363 WLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMY 422
             +   TKL  L+L  N  S I  L  +    L +L+++ N L  + P +    ++ L Y
Sbjct: 261 --LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPISN---LKNLTY 313

Query: 423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH 482
           + +  NN     P  +  + +L  L    NK S     +S+    ++ +L    N     
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DVSSLANLTNINWLSAGHNQISD- 367

Query: 483 IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD 542
                 NLT++  L L +  +T        N      +      L    P  I +     
Sbjct: 368 -LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYT 424

Query: 543 VLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
              ++ N       V    F Q   +        G++
Sbjct: 425 EPDITWNLPSYTNEV-SYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 4e-37
 Identities = 95/530 (17%), Positives = 166/530 (31%), Gaps = 87/530 (16%)

Query: 146 GLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLG 205
               L       L    ++     +   +L  +  L      I  S+  +    NL  + 
Sbjct: 19  TDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQIN 74

Query: 206 MRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLP 265
             NN L        +  L  L ++ +  N +    P  L++L  L  L +  N ++    
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--I 127

Query: 266 SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKV 325
             + NLT+L  L LS N       LS LT+                           L+ 
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTS---------------------------LQQ 160

Query: 326 LQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGIL 385
           L   N    + P  L +    + LD+SSNK+        +   T LE L  +NN  S I 
Sbjct: 161 LSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDIT 215

Query: 386 QLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELF 445
            L  + +  L  L ++ N L  +        +  L  +D++ N      P  +  + +L 
Sbjct: 216 PLGILTN--LDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 446 LLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG 505
            L L  N+ S ++S  +                           LT L  L L  N    
Sbjct: 269 ELKLGANQIS-NISPLA--------------------------GLTALTNLELNENQLED 301

Query: 506 KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 565
                 L +  L  L +  N +S   P  + + + L  L    N +       + N   +
Sbjct: 302 ISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR 625
             L    N++   +    NL+ I  L L + A +    +     +   T+          
Sbjct: 356 NWLSAGHNQI-SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI-- 412

Query: 626 IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
            P  I++        +  N              +   +       +G++ 
Sbjct: 413 APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 1e-33
 Identities = 95/492 (19%), Positives = 168/492 (34%), Gaps = 69/492 (14%)

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
                I+  +             +    +  +V      +L  +T L      ++     
Sbjct: 9   TQDTPIN-QIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG- 63

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL 302
            +  L  L  ++ S N L+    + + NLT L  + +++N      PL+ LTN       
Sbjct: 64  -VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTN------- 113

Query: 303 LLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPT 362
                               L  L L N  +  I   L +  +   L+LSSN +      
Sbjct: 114 --------------------LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA- 151

Query: 363 WLMQNNTKLEVLRLSNN--SFSGILQLPKVKHDLLRHLDISNNNLTGMLP-QNMGIVIQK 419
             +   T L+ L   N       +  L       L  LDIS+N ++ +     +      
Sbjct: 152 --LSGLTSLQQLSFGNQVTDLKPLANLTT-----LERLDISSNKVSDISVLAKL----TN 200

Query: 420 LMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF 479
           L  +  + N      P  +G +  L  L L+ N+        ++    +L  LD++ N  
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQI 255

Query: 480 YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS 539
                     LT+L  L L  N  +       L +  L  L+++ N L    P  I N  
Sbjct: 256 SN--LAPLSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISP--ISNLK 309

Query: 540 YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS 599
            L  L +  N++    P  +++  +LQ L    N++   ++S  NL++I  L   +N +S
Sbjct: 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQIS 366

Query: 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK 659
              P  L   T +  L L D  +     +   N S    +      L    P  +     
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGS 422

Query: 660 LGILDLSHNKLN 671
               D++ N  +
Sbjct: 423 YTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (324), Expect = 1e-31
 Identities = 93/459 (20%), Positives = 157/459 (34%), Gaps = 83/459 (18%)

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
           L    +  LG+ N+   +    +DL  +  L      +       +  L +L  +  S+N
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78

Query: 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
                 PL  LT                            L  + + N  +  I      
Sbjct: 79  QLTDITPLKNLTK---------------------------LVDILMNNNQIADITPL--- 108

Query: 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISN 402
                                   N T L  L L NN  + I  L  + +  L  L++S+
Sbjct: 109 -----------------------ANLTNLTGLTLFNNQITDIDPLKNLTN--LNRLELSS 143

Query: 403 NNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 462
           N ++ +   +    +  L  +    N      P  +  +  L  LD+S NK S D+S  +
Sbjct: 144 NTISDISALSG---LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS-DISVLA 196

Query: 463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
             +  +LE L  + N            LT L  L L  N         L +   L  LD+
Sbjct: 197 --KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250

Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
           +NN +S   P  +   + L  L +  N +    P  +     L  L+L+EN+L      S
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 306

Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
            NL ++ +L L  N +S   P  +   T+L  L   +NK        + N + +  L   
Sbjct: 307 -NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAG 361

Query: 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
            N +    P+A   L ++  L L+      +  +   N+
Sbjct: 362 HNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANV 398

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 8e-20
 Identities = 73/418 (17%), Positives = 148/418 (35%), Gaps = 61/418 (14%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLP-QNMGIVIQKLMYIDISK 427
            +     L   + +  +    +    +  L      +  +   + +      L  I+ S 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQ--VTTLQADRLGIKSIDGVEYL----NNLTQINFSN 77

Query: 428 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTY 487
           N      P  +  + +L  + ++ N+ +     T +    +L  L +  N          
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITD--IDPL 130

Query: 488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547
            NLT L  L L +N  +       L S  L  L   N + +   P  + N + L+ L +S
Sbjct: 131 KNLTNLNRLELSSNTISDISALSGLTS--LQQLSFGNQV-TDLKP--LANLTTLERLDIS 185

Query: 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLF 607
            N +       +     L+ L  + N++         L+++  L L  N L      TL 
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKD--IGTLA 240

Query: 608 RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSH 667
             T L  LDL +N+     P  ++  ++L  L L  N +    P+A   L  L  L+L+ 
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNE 296

Query: 668 NKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYF-QLGGLHSIGTYYN-STLDLWLFGDDY 725
           N+L    P   +  L +           L +YF  +  +  + +      L      ++ 
Sbjct: 297 NQLEDISPISNLKNLTY-----------LTLYFNNISDISPVSSLTKLQRLFF---YNNK 342

Query: 726 ITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
           ++               +  + +NL  ++ +   +N+++   P  +  L ++  L L+
Sbjct: 343 VS---------------DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 7e-17
 Identities = 76/411 (18%), Positives = 139/411 (33%), Gaps = 61/411 (14%)

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP 435
             +   + I     +         +   N+T  + Q     + ++  +   +        
Sbjct: 9   TQDTPINQIFTDTALAE--KMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSI 61

Query: 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495
             +  +  L  ++ S N+ +     T +     L  + ++ N           NLT L  
Sbjct: 62  DGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTG 116

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555
           L L NN  T       L +  L  L++S+N +S      +   + L  L    N +    
Sbjct: 117 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLK 171

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
           P  + N   L+ LD+S N++   I+    L+++  L   NN +S   P  L   T L  L
Sbjct: 172 P--LANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
            L  N+   +    + + + L  L L  N +    P  L  L KL  L L  N+++   P
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

Query: 676 SCFVNMLFWREGNGDLYGSGLYIYF-QLGGLHSIGTYYN-STLDLWLFGDDYITLPQRAR 733
              +  L           + L +   QL  +  I    N + L L               
Sbjct: 283 LAGLTAL-----------TNLELNENQLEDISPISNLKNLTYLTL--------------- 316

Query: 734 VQFVTKNRYEFYNG-SNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                 N     +  S+L  +  +    N+++    S +  L  +  L+  
Sbjct: 317 ----YFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 45/318 (14%), Positives = 95/318 (29%), Gaps = 70/318 (22%)

Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527
            L    ++++     IF     L +     L   + T  +    L+   +  L      +
Sbjct: 2   PLGSATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVSQTDLDQ--VTTLQADRLGI 58

Query: 528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSS 587
                  +   + L  +  S N L    P  + N  +L  + ++ N++      + NL++
Sbjct: 59  KSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA-NLTN 113

Query: 588 IMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
           +  L L NN ++   P                          + N + L  L L  N + 
Sbjct: 114 LTGLTLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTIS 147

Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYF-QLGGLH 706
                AL  L  L  L   +   +    +    +              L I   ++  + 
Sbjct: 148 D--ISALSGLTSLQQLSFGNQVTDLKPLANLTTL------------ERLDISSNKVSDIS 193

Query: 707 SIGTYYN-STLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTG 765
            +    N  +L      ++ I+               +      L  +  + L+ N+L  
Sbjct: 194 VLAKLTNLESLIA---TNNQIS---------------DITPLGILTNLDELSLNGNQLKD 235

Query: 766 EIPSEIGELPKVRALNLS 783
                +  L  +  L+L+
Sbjct: 236 --IGTLASLTNLTDLDLA 251

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (374), Expect = 4e-39
 Identities = 76/403 (18%), Positives = 154/403 (38%), Gaps = 60/403 (14%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
              L       N   +     L       L    +  +        L ++  L ++   +
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
           +S     G+  LTNLE L+L+ N+I+  ++ L+    L  L +  N +    +   +  L
Sbjct: 57  AS---IQGIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKIT---DISALQNL 109

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            NL EL L E+N+    P  L++L  +  L++  NH   +  S ++N+T L YL ++++ 
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESK 166

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF-LLH 342
            +   P++ LT+                           L  L L    ++ I     L 
Sbjct: 167 VKDVTPIANLTD---------------------------LYSLSLNYNQIEDISPLASLT 199

Query: 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISN 402
                +     N++    P   + N T+L  L++ NN  + +  L  +    L  L+I  
Sbjct: 200 S--LHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQ--LTWLEIGT 252

Query: 403 NNLTGMLP-QNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
           N ++ +   +++     KL  +++  N    +I   +  + +L  L L+ N+   +    
Sbjct: 253 NQISDINAVKDL----TKLKMLNVGSNQIS-DIS-VLNNLSQLNSLFLNNNQLG-NEDME 305

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
            +    +L  L +S+N+          +L+++      N    
Sbjct: 306 VIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 3e-37
 Identities = 78/404 (19%), Positives = 148/404 (36%), Gaps = 62/404 (15%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
              L                       +     L   +  D  +     L S+T L +  
Sbjct: 2   AATLATLPA------PINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
            ++  +   QG+  L NL+ LNL+ N I+       L NL  L  L +  N+I+  ++ L
Sbjct: 54  EKVASI---QGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKIT-DISAL 106

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255
               NL+ L +  + ++       +  L  +  L+LG N+    L   LS++ GL  L +
Sbjct: 107 QNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTV 162

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE 315
           + + +     + IANLT L  L+L+ N  +   PL+ LT+                    
Sbjct: 163 TESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASLTS-------------------- 200

Query: 316 NWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLR 375
                  L         +  I   + +      L + +NK+    P   + N ++L  L 
Sbjct: 201 -------LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLE 249

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLP-QNMGIVIQKLMYIDISKNNFEGNI 434
           +  N  S I  +  +    L+ L++ +N ++ +    N+     +L  + ++ N      
Sbjct: 250 IGTNQISDINAVKDLTK--LKMLNVGSNQISDISVLNNL----SQLNSLFLNNNQLGNED 303

Query: 435 PYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478
              IG +  L  L LS+N  +       +   + ++  D +   
Sbjct: 304 MEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 2e-35
 Identities = 81/334 (24%), Positives = 130/334 (38%), Gaps = 30/334 (8%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
            + +  L ++G                    L+ LNLN N   D  +  L+ L  LT L 
Sbjct: 43  LESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLY 94

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           +  N+I  ++    L NL NL+ L L+ + IS  +    L NLT +  L+L AN     L
Sbjct: 95  IGTNKITDISA---LQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDL 148

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
           + L+    L  L +  + +        I  L +L  L L  N +E   P  L+ L  L  
Sbjct: 149 SPLSNMTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRL 312
                N ++    + +AN+T L  L + +N       LS L N S L  L +   +N   
Sbjct: 204 FTAYVNQITD--ITPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEI--GTNQIS 256

Query: 313 KTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLE 372
                    +LK+L + +  +  I     +      L L++N+L       +    T L 
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDISVL-NNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLT 314

Query: 373 VLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
            L LS N  + I  L  +    +   D +N  + 
Sbjct: 315 TLFLSQNHITDIRPLASLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 6e-31
 Identities = 88/473 (18%), Positives = 154/473 (32%), Gaps = 129/473 (27%)

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANR 187
             TL      I  + P    A+L       L    ++     +    L ++  L ++  +
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
           ++                            +GI  L NL  L+L  N +    P  LS+L
Sbjct: 56  VA--------------------------SIQGIEYLTNLEYLNLNGNQITDISP--LSNL 87

Query: 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
           + L  L I  N ++    S + NLT+L  L L+++N     PL+ LT    +  L     
Sbjct: 88  VKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLANLT---KMYSL----- 137

Query: 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQN 367
                                                     +L +N  + +     + N
Sbjct: 138 ------------------------------------------NLGANHNLSDLSP--LSN 153

Query: 368 NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLP-QNMGIVIQKLMYIDIS 426
            T L  L ++ +    +  +  +    L  L ++ N +  + P  ++      L Y    
Sbjct: 154 MTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNYNQIEDISPLASL----TSLHYFTAY 207

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT 486
            N      P  +  M  L  L +  NK + DLS  +                        
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKIT-DLSPLA------------------------ 240

Query: 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546
             NL+QL WL +  N  +  I   + +   L +L++ +N +S      + N S L+ L +
Sbjct: 241 --NLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFL 294

Query: 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS 599
           + N L       I     L  L LS+N +   I    +LS +      N  + 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (298), Expect = 3e-29
 Identities = 78/422 (18%), Positives = 142/422 (33%), Gaps = 77/422 (18%)

Query: 249 GLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
           G   L      ++   P   A+L       L   +         L +             
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELES------------- 45

Query: 309 NLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNN 368
                         +  L +    +  I                             +  
Sbjct: 46  --------------ITKLVVAGEKVASIQGI--------------------------EYL 65

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
           T LE L L+ N  + I  L  +    L +L I  N +T +        +  L  + ++++
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKITDISALQN---LTNLRELYLNED 120

Query: 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM 488
           N     P  +  + +++ L+L  N    DLS   +     L YL V+E+           
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD--VTPIA 174

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
           NLT L  L L  N         L +   L       N ++   P  + N + L+ L +  
Sbjct: 175 NLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFR 608
           N +    P  + N  QL  L++  N++   I +  +L+ +  L + +N +S    S L  
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
            ++L +L L +N+      + I   + L  L L  N++    P+A   L K+   D ++ 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQ 343

Query: 669 KL 670
            +
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (284), Expect = 2e-27
 Identities = 64/354 (18%), Positives = 127/354 (35%), Gaps = 28/354 (7%)

Query: 323 LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS 382
              L      +  I        +     L    +         +    +  L ++    +
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57

Query: 383 GILQLPKVKHDLLRHLDISNNNLTGMLP-QNMGIVIQKLMYIDISKNNFEGNIPYSIGEM 441
            I  +  + +  L +L+++ N +T + P  N+     KL  + I  N        ++  +
Sbjct: 58  SIQGIEYLTN--LEYLNLNGNQITDISPLSNL----VKLTNLYIGTNKIT--DISALQNL 109

Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
             L  L L+ +  S D+S  +      +  L++  N+    +     N+T L +L +  +
Sbjct: 110 TNLRELYLNEDNIS-DISPLA--NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165

Query: 502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 561
                    + N   L  L ++ N +    P  + + + L       N +    P  + N
Sbjct: 166 KVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VAN 219

Query: 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK 621
             +L  L +  N++      + NLS +  L +  N +S    + +   T+L  L++  N+
Sbjct: 220 MTRLNSLKIGNNKITDLSPLA-NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 622 FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
                   +NN S+L  L L  N L  +    +  L  L  L LS N +    P
Sbjct: 277 I--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.4 bits (220), Expect = 5e-19
 Identities = 62/349 (17%), Positives = 128/349 (36%), Gaps = 48/349 (13%)

Query: 437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWL 496
              ++ E     L +   +  ++        S+  L V+              LT L +L
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKV--ASIQGIEYLTNLEYL 71

Query: 497 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 556
            L  N  T       L    L  L I  N ++      + N + L  L ++++++    P
Sbjct: 72  NLNGNQITDISPLSNLVK--LTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127

Query: 557 VQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD 616
             + N  ++  L+L  N     ++   N++ + +L +  + +    P  +   T+L +L 
Sbjct: 128 --LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 617 LRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
           L  N+     P  + + + L       N +    P  +  + +L  L + +NK+    P 
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL 239

Query: 677 CFVNMLFWREGNGDLYGSGLYIYF-QLGGLHSIGTYYN-STLDLWLFGDDYITLPQRARV 734
             ++ L W           L I   Q+  ++++        L++   G + I+       
Sbjct: 240 ANLSQLTW-----------LEIGTNQISDINAVKDLTKLKMLNV---GSNQIS------- 278

Query: 735 QFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                   +    +NL+ ++ + L+ N+L  E    IG L  +  L LS
Sbjct: 279 --------DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 2e-17
 Identities = 65/414 (15%), Positives = 141/414 (34%), Gaps = 75/414 (18%)

Query: 371 LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
              L       + I     +         +   ++T ++ Q     ++ +  + ++    
Sbjct: 2   AATLATLPAPINQIFPDADLAE--GIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV 56

Query: 431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNL 490
             +I   I  +  L  L+L+ N+ +     + +     L  L +  N           NL
Sbjct: 57  A-SIQ-GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKI--TDISALQNL 109

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
           T LR LYL  ++ +      L N   +  L++  N     +   + N + L+ L ++++ 
Sbjct: 110 TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166

Query: 551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRST 610
           ++   P  I N   L  L L+ N++      + +L+S+ +     N ++   P       
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISPLA-SLTSLHYFTAYVNQITDITP------- 216

Query: 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
                              + N + L  L +  N +    P  L  L +L  L++  N++
Sbjct: 217 -------------------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

Query: 671 NGSIPSCFVNMLFWREGNGDLYGSGLYIYF-QLGGLHSIGTYYNSTLDLWLFGDDYITLP 729
           +  I +         +    L    L +   Q+  +  +         L+L  +      
Sbjct: 256 S-DINAV--------KDLTKL--KMLNVGSNQISDISVLNNLSQLN-SLFLNNN------ 297

Query: 730 QRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                Q   ++       +NL     + LS N +T   P  +  L K+ + + +
Sbjct: 298 -----QLGNEDMEVIGGLTNLTT---LFLSQNHITDIRP--LASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 4e-10
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
           G   L      ++   P    + +     ++ K  +   +         +  L ++  ++
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 576 FGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSE 635
             SI     L+++ +L L  N ++   P  L    +L  L +  NK        + N + 
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 636 LRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
           LR L L  + +       L  L K+  L+L  N     +  
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           I + +      +L++L++  N         D     +  +L  L LN N   +  +  + 
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
            LT+LTTL L  N I  + P   LA+L  + + + +   I 
Sbjct: 309 GLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 2e-33
 Identities = 72/483 (14%), Positives = 153/483 (31%), Gaps = 45/483 (9%)

Query: 96  DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKA 155
           +   +  + KI  +  ++   ++     +  ++  L+L  N +  ++ +  LA    L+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSV 215
           LNLS N +        L +L+ L  LDL+ N +     EL    +++ L   NN ++   
Sbjct: 63  LNLSSNVLYETLD---LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVS 115

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSL 274
            S+     +    + L  N +             ++ LD+  N +   N   + A+  +L
Sbjct: 116 CSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 275 EYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN-LRLKTENWIPTFQLKVLQLPNCNL 333
           E+L L  N       +      + L+ L L  SSN L      +     +  + L N  L
Sbjct: 172 EHLNLQYNFIYD---VKGQVVFAKLKTLDL--SSNKLAFMGPEFQSAAGVTWISLRNNKL 226

Query: 334 KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHD 393
            +I   L    + +  DL  N             N ++    ++  +   +    + +  
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECT 284

Query: 394 LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 453
           +                             D+     +  I       KE  LL    ++
Sbjct: 285 VPTLGHYGAYCCE-----------------DLPAPFADRLIALK---RKEHALLSGQGSE 324

Query: 454 FSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
                        A    +D  +  +   I    +       L  K      +  +    
Sbjct: 325 TERLECERE--NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRR 381

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGNIPVQINNFRQLQLLDLSE 572
           +H  +   +   +    +       S L +L      + E  +  Q      ++  D+ +
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 573 NRL 575
           ++ 
Sbjct: 442 HKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (312), Expect = 4e-30
 Identities = 70/458 (15%), Positives = 146/458 (31%), Gaps = 30/458 (6%)

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
                   + +++L+  L         +K LD+S N LS    + +A  T LE L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
                  L  L+    L  L L  ++N     +  +    ++ L   N N+  +      
Sbjct: 69  VLYETLDLESLS---TLRTLDL--NNN---YVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDI 400
               K + L++NK+            ++++ L L  N    +    ++      L HL++
Sbjct: 121 G--KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNL 176

Query: 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
             N +  +      +V  KL  +D+S N     +         +  + L  NK    +  
Sbjct: 177 QYNFIYDVKG---QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 461 TSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520
            ++    +LE+ D+  N F+      +      R   +                    + 
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLQLLDLSENRLF 576
                        +      L     +    +G+    +  +  N  + + +D  + +  
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 577 GSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK--FFGRIPDQINNH 633
             I        + + L  +  AL  Q+ +      EL     +           ++ +  
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671
             LR ++ R  Y +  +     Q   +   D+  +K  
Sbjct: 410 QLLRAIVKR--YEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 2e-29
 Identities = 66/422 (15%), Positives = 140/422 (33%), Gaps = 35/422 (8%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           ++ +   PF +L++L+LS N         +     S   L+ L+LN N   +     L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNYVQE-----LLV 97

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
             S+ TL+   N I  ++ S      +  K + L+ N I+     L  G  + ++ LDL 
Sbjct: 98  GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLK 152

Query: 185 ANRISG--SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
            N I         A    L+ L ++ N +    + KG      L  LDL  N L   +  
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGP 208

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL 302
                 G+  + +  N L   +   +    +LE+  L  N F         + +  ++ +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 303 LLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIP-SFLLHQYDFKFLDLSSNKLVGNFP 361
                +  +L  +N        +        + +P  F       K  + +     G+  
Sbjct: 268 AK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 362 TWL---MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLP--QNMGIV 416
             L    +N  +   +      +  ++    ++      L+     L   +   +     
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE 476
           +   +   + +   +        E   L LL     ++         ++  ++   D+ +
Sbjct: 386 LDGTLQQAVGQIELQHATE----EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 477 NN 478
           + 
Sbjct: 442 HK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 1e-25
 Identities = 65/425 (15%), Positives = 135/425 (31%), Gaps = 48/425 (11%)

Query: 264 LPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQL 323
           +  +  N    +   ++D++ + +   SL  +  N++ L L  S N              
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDL--SGN-------------- 44

Query: 324 KVLQLPNCNLKVIPSFLLHQYDF-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS 382
                    L  I +  L  +   + L+LSSN L        +++ + L  L L+NN   
Sbjct: 45  --------PLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ 93

Query: 383 GILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMK 442
            +L  P      +  L  +NNN++  +  + G   Q    I ++ N          G   
Sbjct: 94  ELLVGPS-----IETLHAANNNIS-RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRS 144

Query: 443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH 502
            +  LDL  N+      A       +LE+L++  N    +     +   +L+ L L +N 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNK 202

Query: 503 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE-GNIPVQINN 561
               +     ++ G+  + + NN L   I   +     L+   +  N    G +    + 
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR--- 618
            +++Q +     +           +     +               R   L   +     
Sbjct: 261 NQRVQTVAKQTVKKLTGQNE-EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 619 -DNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSC 677
                  R+  +  N +  R +       +  I     + Q    L+     L+  + + 
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 678 FVNML 682
                
Sbjct: 380 RRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 1e-23
 Identities = 68/380 (17%), Positives = 125/380 (32%), Gaps = 35/380 (9%)

Query: 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
            +     ++ ++ +  +         +  LDLS N  S  +SA  +     LE L++S N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68

Query: 478 NFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537
             Y        +L+ LR L L NN+        LL    +  L  +NN +S  +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CSR 118

Query: 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASSLNLSSIMHLYLQN 595
                 + ++ N +     +      ++Q LDL  N +        + +  ++ HL LQ 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC 655
           N +   +   +    +L TLDL  NK    +  +  + + +  + LR N L   I  AL 
Sbjct: 179 NFIY-DVKGQVVF-AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 656 QLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNST 715
             Q L   DL  N  +         +  +   N  +         +L G +       + 
Sbjct: 235 FSQNLEHFDLRGNGFHCG------TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 716 LDLWLFGDDYITLPQRARVQFVTKNRYEFYNGS------------NLNYMSGIDLSYNEL 763
                +  + +  P   R+  + +  +   +G             N      ID    + 
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 764 TGEIPSEIGELPKVRALNLS 783
              I            L   
Sbjct: 349 RTVIDQVTLRKQAKITLEQK 368

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 5e-22
 Identities = 48/395 (12%), Positives = 122/395 (30%), Gaps = 22/395 (5%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
            +   +++++L      ++      +  +D+S N         +    +L LL+LS N  
Sbjct: 12  YKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
                   +   ++L  LD++ N          +    +  L+  NN+ + ++       
Sbjct: 71  Y---ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG 121

Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG-NIPVQINNFRQLQLLDLSEN 573
                + ++NN ++       G  S +  L +  N ++  N      +   L+ L+L  N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 574 RLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNH 633
            ++  +   +  + +  L L +N L+  +      +  +  + LR+NK    I   +   
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFS 236

Query: 634 SELRVLLLRGNYLQ-GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLY 692
             L    LRGN    G +     + Q++  +     K           +           
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 693 GSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYN-----G 747
                 +           +   +               +AR + +   + ++        
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 748 SNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNL 782
                   ++     L  ++ +      ++     
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 35/295 (11%), Positives = 74/295 (25%), Gaps = 33/295 (11%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           I +    + F +L+ LDLS N                                 + P   
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL-----------------------------AFMGPEFQ 211

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
           +   +T ++L  N++  +   + L   +NL+  +L  NG   G  R        ++ +  
Sbjct: 212 SAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 184 SANRI--SGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
              +     +  E                L      + I   +    L  G+ +   +L 
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
               +    + +D         +  V     +   L         +       +      
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL 356
           L   V               QL    +       +    +     +  D+  +K 
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 12/225 (5%)

Query: 561 NFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619
           N  + ++  ++++ L  ++AS   +  ++  L L  N LS    + L   T+L  L+L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 620 NKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFV 679
           N  +    D + + S LR L L  NY+Q      L     +  L  ++N ++    S   
Sbjct: 68  NVLYE-TLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 680 NMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTK 739
                   N  +             +  +    N    +     +            +  
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQY 178

Query: 740 NR-YEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
           N  Y+         +  +DLS N+L   +  E      V  ++L 
Sbjct: 179 NFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (320), Expect = 4e-31
 Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 17/315 (5%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
             E ++LDL  N      +  + D   S   L+ L LN N  +       N L +L TL 
Sbjct: 31  PTETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  NR+  + P      L NL  L++S N I      +   +L NL+ L++  N +   +
Sbjct: 87  LRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLV-YI 143

Query: 193 TE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGL 250
           +    +   +L+ L +    L  S+ ++ +  L  L  L L   N+     +    L  L
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 251 KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310
           KVL+IS       +        +L  L+++  N     P   + +   L  L L  S N 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL--SYNP 259

Query: 311 --RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDF-KFLDLSSNKLVGNFPTWLMQN 367
              ++        +L+ +QL    L V+  +     ++ + L++S N+L       +  +
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHS 318

Query: 368 NTKLEVLRLSNNSFS 382
              LE L L +N  +
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (305), Expect = 3e-29
 Identities = 82/362 (22%), Positives = 135/362 (37%), Gaps = 69/362 (19%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
           T    L+L  NRI  LN  +  A+  +L+ L L+ N +S+        NL NL  L L +
Sbjct: 32  TETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRS 89

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
           NR+                 +   +  G         L NLT+LD+ EN +   L +   
Sbjct: 90  NRLKL---------------IPLGVFTG---------LSNLTKLDISENKIVILLDYMFQ 125

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLK 305
           DL  LK L++  N L        + L SLE L L   N     P   L++   L VL L 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRL- 183

Query: 306 VSSNL--RLKTENWIPTFQLKVLQLPNCN-LKVIPSFLLHQYDFKFLDLSSNKLVGNFPT 362
                   ++  ++   ++LKVL++ +   L  +    L+  +   L ++   L    P 
Sbjct: 184 -RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

Query: 363 WLMQNNTKLEVLRLSNNSFSGI-----LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVI 417
             +++   L  L LS N  S I      +L +     L+ + +    L            
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-----LQEIQLVGGQLA----------- 285

Query: 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
                  +    F G        +  L +L++S N+ +  L  +      +LE L +  N
Sbjct: 286 ------VVEPYAFRG--------LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

Query: 478 NF 479
             
Sbjct: 331 PL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 7e-24
 Identities = 68/380 (17%), Positives = 128/380 (33%), Gaps = 84/380 (22%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
               LDLG+N ++       +    L+ L+++ N +S   P    NL +L  L L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY 344
           +   PL + T  SNL  L +                            + ++  ++    
Sbjct: 93  K-LIPLGVFTGLSNLTKLDIS------------------------ENKIVILLDYMFQDL 127

Query: 345 DF-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN 403
              K L++  N LV                  +S+ +FSG   L       L  L +   
Sbjct: 128 YNLKSLEVGDNDLV-----------------YISHRAFSG---LNS-----LEQLTLEKC 162

Query: 404 NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV 463
           NLT                  I               +  L +L L     +  +   S 
Sbjct: 163 NLT-----------------SIPTEALSH--------LHGLIVLRLRHLNIN-AIRDYSF 196

Query: 464 IRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDI 522
            R   L+ L++S   +   + P  +    L  L + + + T  +    +     L  L++
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL 255

Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIAS 581
           S N +S      +     L  + +    L   +          L++L++S N+L  ++  
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL-TTLEE 313

Query: 582 SL--NLSSIMHLYLQNNALS 599
           S+  ++ ++  L L +N L+
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 1e-22
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 13/243 (5%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY--L 122
           +   +F     L  LD+S N                   LK L +  N+     + +   
Sbjct: 95  IPLGVFTGLSNLTKLDISENKI----VILLDYMFQDLYNLKSLEVGDNDL--VYISHRAF 148

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
           + L SL  L L    +  + P++ L++L  L  L L    I++         L  L+VL+
Sbjct: 149 SGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLE 206

Query: 183 LSANRISGSLTELAPF-RNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
           +S      ++T    +  NL  L + +  L  +V    +  L  L  L+L  N +     
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
             L +L+ L+ + +    L+   P     L  L  L +S N        S+  +  NLE 
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 302 LLL 304
           L+L
Sbjct: 325 LIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 1e-22
 Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 13/282 (4%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
            R LD+  N +   L Q+       L  +++++N      P +   +  L  L L  N+ 
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
              +        ++L  LD+SEN     +    + +L  L+ L + +N     I     +
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 514 S-HGLVVLDISNNLLSGHIPC-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571
             + L  L +    L+  IP   + +   L VL +   ++            +L++L++S
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 572 ENRLFGSI-ASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQ 629
                 ++  + L   ++  L + +  L+  +P    R    L  L+L  N     I   
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI-STIEGS 266

Query: 630 I-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
           + +    L+ + L G  L    P A   L  L +L++S N+L
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 74/359 (20%), Positives = 132/359 (36%), Gaps = 42/359 (11%)

Query: 320 TFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN 379
           + Q + +         +P  +    + + LDL  N++          +   LE L L+ N
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNEN 66

Query: 380 SFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYS 437
             S +   P   ++L  LR L + +N L  ++P  +   +  L  +DIS+N     + Y 
Sbjct: 67  IVSAVE--PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 438 IGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM--NLTQLRW 495
             ++  L  L++  N     +S  +     SLE L + + N      PT    +L  L  
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIV 180

Query: 496 LYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 554
           L L++ +    I+       + L VL+IS+      +         L  L ++  +L   
Sbjct: 181 LRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 555 IPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTEL 612
             + + +   L+ L+LS N +  +I  S+   L  +  + L    L+  +    FR    
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGL-- 295

Query: 613 LTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671
                                + LRVL + GN L          +  L  L L  N L 
Sbjct: 296 ---------------------NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 12/241 (4%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTG 505
           LDL +N+    L+         LE L+++EN     + P  + NL  LR L L++N    
Sbjct: 37  LDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLK- 93

Query: 506 KIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFR 563
            I  G+      L  LDIS N +   +     +   L  L +  N L   I  +  +   
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLN 152

Query: 564 QLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDN 620
            L+ L L +  L  SI +    +L  ++ L L++  ++  I    F+    L  L++   
Sbjct: 153 SLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHW 210

Query: 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN 680
            +   +         L  L +    L     +A+  L  L  L+LS+N ++    S    
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 681 M 681
           +
Sbjct: 271 L 271

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 10/174 (5%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           +          L +L L     +   +     S     +LK+L +++  + D++ P    
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
             +LT+L++ +  +  + P   + +L  L+ LNLS+N IS+    + L  L  L+ + L 
Sbjct: 223 GLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSM-LHELLRLQEIQLV 280

Query: 185 ANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNL 236
             +++  +          L+VL +  N L  ++E      + NL  L L  N L
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 9/197 (4%)

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
           T+ R L L  N      +    +   L  L+++ N++S   P    N   L  L +  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 551 LEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLF 607
           L+  IP+ +      L  LD+SEN++   +   +  +L ++  L + +N L   I    F
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 608 RS-TELLTLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665
                L  L L        IP +  +H   L VL LR   +      +  +L +L +L++
Sbjct: 149 SGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 666 SHNKLNGSIPSCFVNML 682
           SH     ++    +  L
Sbjct: 208 SHWPYLDTMTPNCLYGL 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 7e-31
 Identities = 57/327 (17%), Positives = 116/327 (35%), Gaps = 22/327 (6%)

Query: 96  DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKA 155
           +   +  + KI  +  ++   ++     +  ++  L+L  N +  ++ +  LA    L+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSV 215
           LNLS N +        L +L+ L  LDL+ N +     EL    +++ L   NN ++   
Sbjct: 63  LNLSSNVLYETLD---LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVS 115

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSL 274
            S+     +    + L  N +             ++ LD+  N +   N   + A+  +L
Sbjct: 116 CSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 275 EYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN-LRLKTENWIPTFQLKVLQLPNCNL 333
           E+L L  N       +      + L+ L L  SSN L      +     +  + L N  L
Sbjct: 172 EHLNLQYNFIYD---VKGQVVFAKLKTLDL--SSNKLAFMGPEFQSAAGVTWISLRNNKL 226

Query: 334 KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHD 393
            +I   L    + +  DL  N             N +++   ++  +   +    + +  
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECT 284

Query: 394 LLRHLDISNNNLTGMLPQNMGIVIQKL 420
           +              LP      +  L
Sbjct: 285 VPTLGHYGAYCCED-LPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 1e-25
 Identities = 52/261 (19%), Positives = 94/261 (36%), Gaps = 23/261 (8%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           ++ +   PF +L++L+LS N         +     S   L+ L+LN N   +     L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNYVQE-----LLV 97

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
             S+ TL+   N I  ++ S      +  K + L+ N I+     L  G  + ++ LDL 
Sbjct: 98  GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLK 152

Query: 185 ANRISG--SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
            N I         A    L+ L ++ N +        +     L  LDL  N L   +  
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVV-FAKLKTLDLSSNKLA-FMGP 208

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL 302
                 G+  + +  N L   +   +    +LE+  L  N F         + +  ++ +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 303 LLKVSSNLRLKTENWIPTFQL 323
             +    L  + E       L
Sbjct: 268 AKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 2e-25
 Identities = 56/256 (21%), Positives = 99/256 (38%), Gaps = 17/256 (6%)

Query: 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
            +     ++ ++ +  +         +  LDLS N  S  +SA  +     LE L++S N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68

Query: 478 NFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537
               +      +L+ LR L L NN+        LL    +  L  +NN +S  +      
Sbjct: 69  VL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CSR 118

Query: 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASSLNLSSIMHLYLQN 595
                 + ++ N +     +      ++Q LDL  N +        + +  ++ HL LQ 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC 655
           N +   +   +    +L TLDL  NK    +  +  + + +  + LR N L   I  AL 
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 656 QLQKLGILDLSHNKLN 671
             Q L   DL  N  +
Sbjct: 235 FSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 57/360 (15%), Positives = 123/360 (34%), Gaps = 47/360 (13%)

Query: 264 LPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQL 323
           +  +  N    +   ++D++ + +   SL  +  N++ L L  S N              
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDL--SGN-------------- 44

Query: 324 KVLQLPNCNLKVIPSFLLHQYDF-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS 382
                    L  I +  L  +   + L+LSSN L        +++ + L  L L+NN   
Sbjct: 45  --------PLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ 93

Query: 383 GILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMK 442
            +L  P      +  L  +NNN++  +  + G   Q    I ++ N          G   
Sbjct: 94  ELLVGPS-----IETLHAANNNIS-RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRS 144

Query: 443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH 502
            +  LDL  N+      A       +LE+L++  N    +     +   +L+ L L +N 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNK 202

Query: 503 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 562
               +     ++ G+  + + NN L   I   +     L+   +  N       ++    
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFS 259

Query: 563 RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622
           +  ++  +++  +      +    ++  L          +P+          + L  +  
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (253), Expect = 1e-23
 Identities = 52/283 (18%), Positives = 105/283 (37%), Gaps = 21/283 (7%)

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
                   + +++L+  L         +K LD+S N LS    + +A  T LE L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
                  L  L+    L  L L  ++N     +  +    ++ L   N N+  +      
Sbjct: 69  VLYETLDLESLS---TLRTLDL--NNN---YVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDI 400
               K + L++NK+            ++++ L L  N    +    ++      L HL++
Sbjct: 121 G--KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNL 176

Query: 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
             N +   +     +V  KL  +D+S N     +         +  + L  NK    +  
Sbjct: 177 QYNFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 461 TSVIRCASLEYLDVSENNFY-GHIFPTYMNLTQLRWLYLKNNH 502
            ++    +LE+ D+  N F+ G +   +    +++ +  +   
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 16/219 (7%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
           ++ L  + N            S    +  K + L  N             + +  L+L  
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
           N I  +N ++  A+   L+ LNL +N I       G      L+ LDLS+N+++    E 
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE-GQLPWCLSDLIGLKVLD 254
                +  + +RNN L   +  K +   +NL   DL  N    G L    S    ++ + 
Sbjct: 211 QSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 255 ISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
                    L        ++  L         + P    
Sbjct: 269 KQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 12/184 (6%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
           N  + +   + ++     + +   ++  +  LD+S N LS      +  F+ L++L +S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF 607
           N L   +   + +   L+ LDL+ N +       L    SI  L+  NN +S ++  +  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRG 119

Query: 608 RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG-QIPIALCQLQKLGILDLS 666
           +      + L +NK            S ++ L L+ N +              L  L+L 
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 667 HNKL 670
           +N +
Sbjct: 178 YNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 512 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571
            N +   +  ++++ L   +     +   +  L +S N L       +  F +L+LL+LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 572 ENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQIN 631
            N L        +LS++  L L NN +       L     + TL   +N    R+     
Sbjct: 67  SNVL-YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVSCSRG 119

Query: 632 NHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
                + + L  N +     +      ++  LDL  N+++    +      
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 39/253 (15%), Positives = 79/253 (31%), Gaps = 40/253 (15%)

Query: 535 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYL 593
             N +   +  ++ + L+  +     +   ++ LDLS N L    A+ L   + +  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 594 QNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA 653
            +N L       L   + L TLDL +N        ++     +  L    N +  ++  +
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 654 LCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYN 713
               Q    + L++NK+                                  +  +    N
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGC---------------------RSRVQYLDLKLN 154

Query: 714 --STLDLWLFGDDYITLPQRARVQFVTKNR-YEFYNGSNLNYMSGIDLSYNELTGEIPSE 770
              T++      +            +  N  Y+         +  +DLS N+L   +  E
Sbjct: 155 EIDTVNF----AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE 209

Query: 771 IGELPKVRALNLS 783
                 V  ++L 
Sbjct: 210 FQSAAGVTWISLR 222

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 1e-29
 Identities = 110/511 (21%), Positives = 177/511 (34%), Gaps = 65/511 (12%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
              T LN+  N I  L  S  + +L  L+ L +S N I                 LE LD
Sbjct: 21  QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLD 75

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           LS N++                                    NL  LDL  N  +  LP 
Sbjct: 76  LSHNKLVK-----ISCHPTV----------------------NLKHLDLSFNAFD-ALPI 107

Query: 243 C--LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE 300
           C    ++  LK L +S  HL  +    IA+L   + L +    +  +     L + +   
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 301 VLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNF 360
           + ++  ++       +        V  L   N+K +       Y    L           
Sbjct: 168 LHIVFPTNKEFHFILDV---SVKTVANLELSNIKCVLEDNKCSYFLSIL--------AKL 216

Query: 361 PTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNM----GIV 416
            T    +N  L  +  + NSF  ILQL  V H  + +  ISN  L G L        G  
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE 476
           ++ L    +  + F     Y       + + + + +  +  +      + +   +LD S 
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSN 333

Query: 477 NNFYGHIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCW 534
           N     +F    +LT+L  L L+ N      KI         L  LDIS N +S      
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK- 392

Query: 535 IGNFSY---LDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHL 591
            G+ S+   L  L MS N L   I   +    ++++LDL  N++       + L ++  L
Sbjct: 393 -GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449

Query: 592 YLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622
            + +N L         R T L  + L  N +
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 7e-24
 Identities = 84/465 (18%), Positives = 181/465 (38%), Gaps = 46/465 (9%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           L  S  L   +L+IL +S N      +  D      +++L+ L+L++N      +   + 
Sbjct: 36  LWTSDILSLSKLRILIISHNRI----QYLDISVFKFNQELEYLDLSHNKL--VKIS-CHP 88

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
             +L  L+L +N    L   +   N+  LK L LS   +   +    +  + +L +  + 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVL 144

Query: 185 ANRISGSLTELAP--FRNLKVLGMR---------NNLLNGSVESKGICELKNLTELDLGE 233
                    +  P   ++     +          + +L+ SV++    EL N+  + L +
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV-LED 203

Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA-----NLTSLEYLALSDNNFQGEF 288
           N     L          K+ +++ N++     S I        T++ Y ++S+   QG+ 
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 289 PLSLL-TNHSNLEVLLLKVSSNLRLKTENWIPTF----QLKVLQLPNCNLKVIPSFLLHQ 343
                  + ++L+ L +    +           +     + +        +++      +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 344 -YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDI 400
              F  LD S+N L  +       + T+LE L L  N    + ++ ++   +  L+ LDI
Sbjct: 323 ISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
           S N+++    +      + L+ +++S N     I   +     + +LDL  NK    +  
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 461 TSVIRCASLEYLDVSENNFYGHIFP--TYMNLTQLRWLYLKNNHF 503
             V++  +L+ L+V+ N       P   +  LT L+ ++L  N +
Sbjct: 439 -QVVKLEALQELNVASNQL--KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (258), Expect = 3e-23
 Identities = 87/469 (18%), Positives = 155/469 (33%), Gaps = 46/469 (9%)

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
           +  T L++ +N +       +  L  L++L IS N +     SV      LEYL LS N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF----QLKVLQLPNCNLKVIP-- 337
              +          NL+ L L   S            F    QLK L L   +L+     
Sbjct: 81  LV-KISCHPTV---NLKHLDL---SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 338 SFLLHQYDFKFLDLSSNKLVGNFPTWLMQ-NNTKLEVLRLSNNSFSGILQLPKVKHDLLR 396
                      L L         P  L   N   L ++  +N  F  IL +       L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 397 HLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 456
             +I            + I+ +      +S                    ++ + N F  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN--------------IETTWNSFIR 239

Query: 457 DLSATSVIRCASLEYLDVSENNFYGHIFPTYM-----NLTQLRWLYLKNNHFTGKIKAGL 511
            L    ++   ++ Y  +S     G +          +L  L    + ++ F        
Sbjct: 240 IL---QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 512 LNSHGLVVLDIS-NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDL 570
                + + + + +     H+ C     S    L  S N L   +     +  +L+ L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 571 SENRL---FGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRI 626
             N+L         +  + S+  L +  N++S             LL+L++  N     I
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 627 PDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
              +     ++VL L  N ++  IP  + +L+ L  L+++ N+L  S+P
Sbjct: 416 FRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 75/445 (16%), Positives = 138/445 (31%), Gaps = 64/445 (14%)

Query: 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309
             +L+IS N++S    S I +L+ L  L +S N  Q                  L +S  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-----------------LDISVF 65

Query: 310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNT 369
              +        +L+ L L +  L  I          K LDLS N            N +
Sbjct: 66  KFNQ--------ELEYLDLSHNKLVKISCHPTVN--LKHLDLSFNAFDALPICKEFGNMS 115

Query: 370 KLEVLRLSNNSF-SGILQLPKVKHDLLRHLDISNNNLTGMLPQN-MGIVIQKLMYIDISK 427
           +L+ L LS        +      +     L +         P+       + L  +  + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 428 NNFEGNIPYSIGEMKELFLLDLSRNKFSGD----------LSATSVIRCASLEYLDVSEN 477
             F   +  S+  +  L L ++                  L     +   +L  ++ + N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 478 NFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537
           +F        +  T + +  + N    G++             D S   L          
Sbjct: 236 SFIR--ILQLVWHTTVWYFSISNVKLQGQLD--------FRDFDYSGTSLK--------- 276

Query: 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL-FGSIASSLNLSSIMHLYLQNN 596
              L +  +  +            F  + + + + +      +     +S  +HL   NN
Sbjct: 277 --ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 597 ALSGQIPSTLFRSTELLTLDLRDNKF--FGRIPDQINNHSELRVLLLRGNYLQGQIPIAL 654
            L+  +       TEL TL L+ N+     +I +       L+ L +  N +        
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 655 C-QLQKLGILDLSHNKLNGSIPSCF 678
           C   + L  L++S N L  +I  C 
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 57  NSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND 116
             SD F      ++  F  + I + + +                      L+ + N   D
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSG----TRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 117 SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL-ANLRNLKALNLSWNGISSGATRLGLGNL 175
           +V      LT L TL L  N++  L+    +   +++L+ L++S N +S    +      
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 176 TNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235
            +L  L++S+N ++ ++                            C    +  LDL  N 
Sbjct: 399 KSLLSLNMSSNILTDTIFR--------------------------CLPPRIKVLDLHSNK 432

Query: 236 LEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
           ++  +P  +  L  L+ L+++ N L      +   LTSL+ + L  N + 
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 26/333 (7%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
            K  +L +S N  S +         L  LR L IS+N +   L  ++    Q+L Y+D+S
Sbjct: 21  QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS 77

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT 486
            N        S      L  LDLS N F            + L++L +S  +        
Sbjct: 78  HNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDI---SNNLLSGHIPCWIGNFSYLDV 543
             +L   + L +    +  K     L       L I   +N      +   +   + L++
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 544 L----LMSKNHLEGNIPVQINNFRQLQLLDLSENRL------FGSIASSLNLSSIMHLYL 593
                ++  N     + +        +L +L+ N +      F  I   +  +++ +  +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 594 QNNALSGQIPSTLFRST-----ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648
            N  L GQ+    F  +      L    +  + F           S + +     +  + 
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 649 QIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
              +   ++     LD S+N L  ++     ++
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 62/395 (15%), Positives = 119/395 (30%), Gaps = 67/395 (16%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
              L+IS N ++ +   ++  +  KL  + IS N  +          +EL  LDLS NK 
Sbjct: 23  TTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK- 80

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
              L   S     +L++LD+S N F    I   + N++QL++L L   H        + +
Sbjct: 81  ---LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573
            +   VL +                   +   +            I +     + +L  +
Sbjct: 138 LNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 574 RLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNH 633
            +         +          + L+    +    +  L  ++   N F      Q+  H
Sbjct: 196 NIK-------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR--ILQLVWH 246

Query: 634 SELRVLLLRGNYLQGQI-----PIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGN 688
           + +    +    LQGQ+       +   L+ L I  +  +                    
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ-------------- 292

Query: 689 GDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGS 748
                S +Y  F    + +        + +                             S
Sbjct: 293 -----SYIYEIFSNMNIKNFTVSGTRMVHMLCP--------------------------S 321

Query: 749 NLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
            ++    +D S N LT  +    G L ++  L L 
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 3e-29
 Identities = 104/507 (20%), Positives = 169/507 (33%), Gaps = 90/507 (17%)

Query: 172 LGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
             N+ +      + +    +        R + V  +R+            C  +   EL+
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD------------CLDRQAHELE 77

Query: 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPL 290
           L    L   LP        L+ L  S N L+  LP +  +L SL     +        P 
Sbjct: 78  LNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP- 131

Query: 291 SLLTNHSNLEVLLLKVSSNLRLKTENWIPTF----QLKVLQLPNCNLKVIPSFLLHQYDF 346
                   LE L +   SN +L+    +P       LK++ + N +LK +P         
Sbjct: 132 -------LLEYLGV---SNNQLEK---LPELQNSSFLKIIDVDNNSLKKLPDLPPS---L 175

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
           +F+   +N+L    P   +QN   L  +   NNS   +  LP      L  +   NN L 
Sbjct: 176 EFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNNILE 228

Query: 407 GMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466
             LP+   +    L  I    N  +  +P     ++ L + D                  
Sbjct: 229 -ELPELQNL--PFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ------- 277

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
            SL +LDVSEN F G           L +L   +N     +     +   L  L++SNN 
Sbjct: 278 -SLTFLDVSENIFSG--LSEL--PPNLYYLNASSNEIR-SLCDLPPS---LEELNVSNNK 328

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--N 584
           L   +P        L+ L+ S NHL   +P    N   L+ L +  N L           
Sbjct: 329 LI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPL-----REFPDI 375

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
             S+  L + ++    ++P        L  L +  N      PD   +   +  L +   
Sbjct: 376 PESVEDLRMNSH--LAEVPELP---QNLKQLHVETNPL-REFPDIPES---VEDLRMNSE 426

Query: 645 YLQGQIPIALCQLQKLGILDLSHNKLN 671
            +      A     KL      H+  +
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (297), Expect = 2e-28
 Identities = 87/469 (18%), Positives = 148/469 (31%), Gaps = 85/469 (18%)

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
                 L E     +NL  ++P    ++        +++    N P        +    L
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT--FQLKVLQLPNCNLKVIP 337
            D   +                L L   +NL L +   +P     L+ L     +L  +P
Sbjct: 66  RDCLDR------------QAHELEL---NNLGLSS---LPELPPHLESLVASCNSLTELP 107

Query: 338 SFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRH 397
                       + +   L    P         LE L +SNN    + +L       L+ 
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLPELQNSSF--LKI 157

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
           +D+ NN+L   LP         L +I    N  E  +P  +  +  L  +    N     
Sbjct: 158 IDVDNNSLK-KLPDL----PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-- 208

Query: 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL 517
                     SLE +    N       P   NL  L  +Y  NN     +     +   L
Sbjct: 209 ---KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---L 259

Query: 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG 577
             L++ +N L+  +P    + ++LDV     + L    P        L  L+ S N +  
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI-- 309

Query: 578 SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELR 637
             +      S+  L + NN L  ++P+       L  L    N     +P+   N   L+
Sbjct: 310 -RSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNH-LAEVPELPQN---LK 360

Query: 638 VLLLRGNYLQGQIPIALCQLQKLGI----------------LDLSHNKL 670
            L +  N L+ + P     ++ L +                L +  N L
Sbjct: 361 QLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 1e-26
 Identities = 79/441 (17%), Positives = 141/441 (31%), Gaps = 72/441 (16%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
           ++   L LN      S LP       L +L    N +  L       +L++L   N +  
Sbjct: 71  RQAHELELNNLGL--SSLP--ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK 124

Query: 162 GISSGATRLG--------------LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMR 207
            +S     L               L N + L+++D+  N +           +L+ +   
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAG 181

Query: 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
           NN L    E   +  L  LT +    N+L+ +LP      + L+ +    N L       
Sbjct: 182 NNQLE---ELPELQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNNILE--ELPE 232

Query: 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQ 327
           + NL  L  +   +N  +     +L     +LE L +    +  L     +P   L  L 
Sbjct: 233 LQNLPFLTTIYADNNLLK-----TLPDLPPSLEALNV---RDNYLTDLPELPQ-SLTFLD 283

Query: 328 LPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL 387
           +       +     +     +L+ SSN++       L      LE L +SNN    +  L
Sbjct: 284 VSENIFSGLSELPPN---LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLIELPAL 335

Query: 388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL 447
           P      L  L  S N+L   +P+      Q L  + +  N      P     +++L + 
Sbjct: 336 PP----RLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLR-EFPDIPESVEDLRMN 385

Query: 448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI 507
                               +L+ L V  N      FP       +  L + +       
Sbjct: 386 SHLAEVPE---------LPQNLKQLHVETNPL--REFP--DIPESVEDLRMNSERVVDPY 432

Query: 508 KAGLLNSHGLVVLDISNNLLS 528
           +     +  L      ++   
Sbjct: 433 EFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 76/356 (21%), Positives = 120/356 (33%), Gaps = 70/356 (19%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
                 L+I+D+  N      +            L+ +    N      LP L  L  LT
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAGNNQL--EELPELQNLPFLT 198

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            +    N +  L          +L+++    N +        L NL  L  +    N + 
Sbjct: 199 AIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLK 250

Query: 190 GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIG 249
            +L +L P  +L+ L +R+N L    E       ++LT LD+ EN   G     LS+L  
Sbjct: 251 -TLPDLPP--SLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSG-----LSELPP 297

Query: 250 -LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
            L  L+ S N +     S+     SLE L +S+N    E P         LE L+    S
Sbjct: 298 NLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALP----PRLERLIA---S 345

Query: 309 NLRLKTENWIPTF--QLKVLQLPNCNLKVIPSFLLHQYDF----------------KFLD 350
              L     +P     LK L +    L+  P       D                 K L 
Sbjct: 346 FNHLAE---VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
           + +N L   FP         +E LR+++       +      D L      +++  
Sbjct: 403 VETNPLR-EFPDIP----ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 4e-16
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 32/292 (10%)

Query: 394 LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 453
            L+     ++NLT  +P      ++       + + +E N P   GE +E+ +  L    
Sbjct: 12  FLQEPLRHSSNLTE-MPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 454 FSG----DLSATSVIR----CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG 505
                  +L+   +         LE L  S N+    +     +L  L          + 
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSD 128

Query: 506 KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 565
                      L  L +SNN L   +P  + N S+L ++ +  N L+  +P    +   L
Sbjct: 129 LP-------PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS---L 175

Query: 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR 625
           + +    N+L   +    NL  +  +Y  NN+L  ++P        L ++   +N     
Sbjct: 176 EFIAAGNNQL-EELPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNIL--E 228

Query: 626 IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSC 677
              ++ N   L  +    N L+  +P     L+ L + D     L     S 
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 61/315 (19%), Positives = 103/315 (32%), Gaps = 70/315 (22%)

Query: 68  SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTS 127
            L      L+ +    N                                  LP L  L  
Sbjct: 209 KLPDLPLSLESIVAGNNIL------------------------------EELPELQNLPF 238

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANR 187
           LTT+    N +  L       +L  L   +     +          +LT L+V +   + 
Sbjct: 239 LTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSG 291

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
           +S          NL  L   +N +    +        +L EL++  N L  +LP   +  
Sbjct: 292 LSELPP------NLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLI-ELP---ALP 336

Query: 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
             L+ L  SFNHL+  +P +  NL  L    +  N  + EFP        ++E L +   
Sbjct: 337 PRLERLIASFNHLA-EVPELPQNLKQLH---VEYNPLR-EFPDIP----ESVEDLRM--- 384

Query: 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQN 367
            N  L     +P   LK L +    L+  P         + L ++S ++V +   +  + 
Sbjct: 385 -NSHLAEVPELPQ-NLKQLHVETNPLREFPDIPES---VEDLRMNSERVV-DPYEFAHET 438

Query: 368 NTKLEVLRLSNNSFS 382
             KLE     ++   
Sbjct: 439 TDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 30/201 (14%)

Query: 482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL 541
            I P  ++ T L+     +++ T ++     N         + +    + P   G    +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALS 599
            V  +                RQ   L+L+   L     SSL      +  L    N+L+
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGL-----SSLPELPPHLESLVASCNSLT 104

Query: 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK 659
            ++P        LL  +          P        L  L +  N L+ ++P  L     
Sbjct: 105 -ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSF 154

Query: 660 LGILDLSHNKLNGSIPSCFVN 680
           L I+D+ +N L   +P    +
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPS 174

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 4e-29
 Identities = 76/355 (21%), Positives = 135/355 (38%), Gaps = 30/355 (8%)

Query: 107 LNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSG 166
           ++++    +        TL +   +    + +  L P+  L + R ++ LNL+   I   
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEI 84

Query: 167 ATRLGLGNLTNLEVLDLSANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELK 224
            T         ++ L +  N I   L          L VL +  N L+ S+         
Sbjct: 85  DTYA-FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
            LT L +  NNLE            L+ L +S N L+ ++   ++ + SL +  +S N  
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL- 197

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY 344
                LS L     +E L     S+  +         +L +L+L + NL       L+  
Sbjct: 198 -----LSTLAIPIAVEELDA---SHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYP 248

Query: 345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISN 402
               +DLS N+L             +LE L +SNN    ++ L      +  L+ LD+S+
Sbjct: 249 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR---LVALNLYGQPIPTLKVLDLSH 304

Query: 403 NNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
           N+L   + +N      +L  + +  N+    +  S      L  L LS N +  +
Sbjct: 305 NHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (288), Expect = 1e-27
 Identities = 71/341 (20%), Positives = 129/341 (37%), Gaps = 33/341 (9%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
            +     +I+    +               S +++++LNLN     +          ++ 
Sbjct: 41  DITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            L + +N I  L P     N+  L  L L  N +SS    +   N   L  L +S N + 
Sbjct: 97  KLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLE 154

Query: 190 GSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
             + +       +L+ L + +N L   V+      + +L   ++  N L       L+  
Sbjct: 155 -RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHANVSYNLLS-----TLAIP 204

Query: 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
           I ++ LD S N ++  +   +     L  L L  NN       + L N+  L  + L  S
Sbjct: 205 IAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT---DTAWLLNYPGLVEVDL--S 256

Query: 308 SNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLM 365
            N   ++    ++   +L+ L + N  L  +  +       K LDLS N L+ +      
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ- 314

Query: 366 QNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
               +LE L L +NS      L    H  L++L +S+N+  
Sbjct: 315 PQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (284), Expect = 4e-27
 Identities = 71/395 (17%), Positives = 142/395 (35%), Gaps = 53/395 (13%)

Query: 181 LDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           +D+    +     ++    N K++  +N+ +   + +  +   + +  L+L +  +E   
Sbjct: 28  IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE 300
            +  +    ++ L + FN +    P V  N+  L  L L  N+     P  +  N   L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 301 VLLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVG 358
            L +  S+N   R++ + +  T  L+ LQL +  L  +   L+        ++S N L  
Sbjct: 145 TLSM--SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS--LFHANVSYNLLS- 199

Query: 359 NFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ 418
                 +     +E L  S+NS   I  +    +  L  L + +NNLT            
Sbjct: 200 -----TLAIPIAVEELDASHNS---INVVRGPVNVELTILKLQHNNLT------------ 239

Query: 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478
                         +    +     L  +DLS N+    +     ++   LE L +S N 
Sbjct: 240 --------------DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR 283

Query: 479 FYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 538
               +      +  L+ L L +NH    ++        L  L + +N +   +   +   
Sbjct: 284 L-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 338

Query: 539 SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573
             L  L +S N  + N    +  FR +    + + 
Sbjct: 339 HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (267), Expect = 6e-25
 Identities = 68/331 (20%), Positives = 120/331 (36%), Gaps = 19/331 (5%)

Query: 342 HQYDFKFLDLSSNKLVGN-FPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDI 400
            QYD  F D+  +    + +  +        +++   N++   +          +  L++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
           ++  +   +          +  + +  N      P+    +  L +L L RN  S  L  
Sbjct: 77  NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134

Query: 461 TSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520
                   L  L +S NN       T+   T L+ L L +N  T  +   L+ S  L   
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHA 191

Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580
           ++S NLLS      +     ++ L  S N +     V+     +L +L L  N L    A
Sbjct: 192 NVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL-TDTA 242

Query: 581 SSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVL 639
             LN   ++ + L  N L  +I    F     L  L + +N+    +         L+VL
Sbjct: 243 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVL 300

Query: 640 LLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
            L  N+L   +     Q  +L  L L HN +
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (267), Expect = 7e-25
 Identities = 71/395 (17%), Positives = 133/395 (33%), Gaps = 46/395 (11%)

Query: 226 LTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
             ++ +     +    +    L   K++    + +     +++ +   +E L L+D   +
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD 345
            E           ++ L +                            ++ +P  +     
Sbjct: 83  -EIDTYAFAYAHTIQKLYMG------------------------FNAIRYLPPHVFQNVP 117

Query: 346 F-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNN 404
               L L  N L  + P  +  N  KL  L +SNN+   I          L++L +S+N 
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 405 LTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI 464
           LT +    +      L + ++S N        ++     +  LD S N     ++     
Sbjct: 177 LTHVDLSLI----PSLFHANVSYNLLS-----TLAIPIAVEELDASHNS----INVVRGP 223

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
               L  L +  NN         +N   L  + L  N     +    +    L  L ISN
Sbjct: 224 VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           N L   +  +      L VL +S NHL  ++      F +L+ L L  N +  ++  S  
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLS-T 337

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619
             ++ +L L +N         LFR+     +D  D
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (267), Expect = 8e-25
 Identities = 62/327 (18%), Positives = 117/327 (35%), Gaps = 24/327 (7%)

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
           K +   ++ +    P  L+ +  ++E+L L++     I          ++ L +  N + 
Sbjct: 48  KIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 407 GMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466
             LP ++   +  L  + + +N+             +L  L +S N     +   +    
Sbjct: 107 -YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQAT 164

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
            SL+ L +S N    H+  +   +  L    +  N  +      L     +  LD S+N 
Sbjct: 165 TSLQNLQLSSNRL-THVDLS--LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 216

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--N 584
           ++  +         L +L +  N+L  +    + N+  L  +DLS N L   I       
Sbjct: 217 IN-VVR--GPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL-EKIMYHPFVK 270

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           +  +  LY+ NN L   +         L  LDL  N     +         L  L L  N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHN 328

Query: 645 YLQGQIPIALCQLQKLGILDLSHNKLN 671
            +   + ++      L  L LSHN  +
Sbjct: 329 SIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 23/221 (10%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              L   ++S N            +      ++ L+ ++N+   +V+        LT L 
Sbjct: 185 IPSLFHANVSYNLLS---------TLAIPIAVEELDASHNSI--NVVR-GPVNVELTILK 232

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L +N +     +  L N   L  ++LS+N +           +  LE L +S NR+    
Sbjct: 233 LQHNNL---TDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALN 288

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
               P   LKVL + +N L      +   +   L  L L  N++   L   LS    LK 
Sbjct: 289 LYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN 343

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
           L +S N    N    +    ++   A+ D +   +    L 
Sbjct: 344 LTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 54/323 (16%), Positives = 107/323 (33%), Gaps = 48/323 (14%)

Query: 469 LEYLDVSENNFYGHIF--PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
             + DV  +     ++     + L   + +  KN+       A L +   + +L++++  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL-- 583
           +             +  L M  N +   +P  +  N   L +L L  N L  S+   +  
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFH 138

Query: 584 NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
           N   +  L + NN L  +I    F++ T L  L L  N+    +    +    L    + 
Sbjct: 139 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDL--SLIPSLFHANVS 194

Query: 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYF-Q 701
            N L       L     +  LD SHN +N       V +            + L +    
Sbjct: 195 YNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVEL------------TILKLQHNN 237

Query: 702 LGGLHSIGTYYN-STLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSY 760
           L     +  Y     +DL               ++ +  + +       +  +  + +S 
Sbjct: 238 LTDTAWLLNYPGLVEVDL-----------SYNELEKIMYHPF-----VKMQRLERLYISN 281

Query: 761 NELTGEIPSEIGELPKVRALNLS 783
           N L   +      +P ++ L+LS
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLS 303

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           + + +  L +  L  +DLS N      E   Y      ++L+ L ++ N    ++  Y  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
            + +L  L+L +N +  +           L+ L L  N I +    L L     L+ L L
Sbjct: 293 PIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVT----LKLSTHHTLKNLTL 346

Query: 184 SANRISGSLTELAPFRNLKVLGMRNN 209
           S N    + +  A FRN+    + + 
Sbjct: 347 SHNDWDCN-SLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 49/301 (16%), Positives = 102/301 (33%), Gaps = 45/301 (14%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
                  +++             +  +   ++   N+ +       + +F  +++L ++ 
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTL 606
             +E            +Q L +  N +   +   +  N+  +  L L+ N LS  +P  +
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 136

Query: 607 FRS-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILD 664
           F +  +L TL + +N    RI D      + L+ L L  N L     + L  +  L   +
Sbjct: 137 FHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHAN 192

Query: 665 LSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTL-DLWLFGD 723
           +S+N L+ ++             N                ++ +    N  L  L L  +
Sbjct: 193 VSYNLLS-TLAIPIAVEELDASHNS---------------INVVRGPVNVELTILKLQHN 236

Query: 724 DYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEI-GELPKVRALNL 782
           +                     N   L     +DLSYNEL  +I      ++ ++  L +
Sbjct: 237 NLTDTA-------------WLLNYPGLVE---VDLSYNELE-KIMYHPFVKMQRLERLYI 279

Query: 783 S 783
           S
Sbjct: 280 S 280

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 7e-27
 Identities = 75/355 (21%), Positives = 135/355 (38%), Gaps = 30/355 (8%)

Query: 107 LNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSG 166
           ++++    +        TL +   +    + +  L P+  L + R ++ LNL+   I   
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEI 90

Query: 167 ATRLGLGNLTNLEVLDLSANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELK 224
            T         ++ L +  N I   L          L VL +  N L+ S+         
Sbjct: 91  DTYA-FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
            LT L +  NNLE            L+ L +S N L+ ++   ++ + SL +  +S N  
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL- 203

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY 344
                LS L     +E L     S+  +         +L +L+L + NL       L+  
Sbjct: 204 -----LSTLAIPIAVEELDA---SHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYP 254

Query: 345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISN 402
               +DLS N+L             +LE L +SNN    ++ L      +  L+ LD+S+
Sbjct: 255 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR---LVALNLYGQPIPTLKVLDLSH 310

Query: 403 NNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
           N+L   + +N      +L  + +  N+    +   +     L  L LS N +  +
Sbjct: 311 NHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  112 bits (281), Expect = 7e-26
 Identities = 90/505 (17%), Positives = 174/505 (34%), Gaps = 66/505 (13%)

Query: 181 LDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           +D+    +     ++    N K++  +N+ +   + +  +   + +  L+L +  +E   
Sbjct: 34  IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE 300
            +  +    ++ L + FN +    P V  N+  L  L L  N+     P  +  N   L 
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 150

Query: 301 VLLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVG 358
            L +  S+N   R++ + +  T  L+ LQL +  L  +   L+        ++S N L  
Sbjct: 151 TLSM--SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS--LFHANVSYNLLS- 205

Query: 359 NFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ 418
                 +     +E L  S+NS   I  +    +  L  L + +NNLT            
Sbjct: 206 -----TLAIPIAVEELDASHNS---INVVRGPVNVELTILKLQHNNLT------------ 245

Query: 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478
                         +    +     L  +DLS N+    +     ++   LE L +S N 
Sbjct: 246 --------------DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR 289

Query: 479 FYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 538
               +      +  L+ L L +NH    ++        L  L + +N +   +   +   
Sbjct: 290 L-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 344

Query: 539 SYLDVLLMSKNHLEGN-IPVQINNFRQLQLLDLSEN-----RLFGSIASSLNLSSIMHLY 592
             L  L +S N  + N +     N  +  + D  ++     +L   +    +    +   
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

Query: 593 LQNNALSG--------QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           LQ  AL+         Q   +   +   +          G +P Q N   E  V  LR  
Sbjct: 405 LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR-A 463

Query: 645 YLQGQIPIALCQLQKLGILDLSHNK 669
            +Q      + Q Q L  L    + 
Sbjct: 464 EVQQLTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 2e-25
 Identities = 71/340 (20%), Positives = 127/340 (37%), Gaps = 31/340 (9%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
            +     +I+    +               S +++++LNLN     +          ++ 
Sbjct: 47  DITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            L + +N I  L P     N+  L  L L  N +SS    +   N   L  L +S N + 
Sbjct: 103 KLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLE 160

Query: 190 G-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLI 248
                      +L+ L + +N L   V+      + +L   ++  N L       L+  I
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHANVSYNLLST-----LAIPI 211

Query: 249 GLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
            ++ LD S N ++  +   +     L  L L  NN       + L N+  L  + L  S 
Sbjct: 212 AVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT---DTAWLLNYPGLVEVDL--SY 263

Query: 309 NL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQ 366
           N   ++    ++   +L+ L + N  L  +  +       K LDLS N L+ +       
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-P 321

Query: 367 NNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
              +LE L L +NS      L    H  L++L +S+N+  
Sbjct: 322 QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (256), Expect = 7e-23
 Identities = 73/408 (17%), Positives = 137/408 (33%), Gaps = 48/408 (11%)

Query: 226 LTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
             ++ +     +    +    L   K++    + +     +++ +   +E L L+D   +
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD 345
            E           ++ L +                            ++ +P  +     
Sbjct: 89  -EIDTYAFAYAHTIQKLYMG------------------------FNAIRYLPPHVFQNVP 123

Query: 346 F-KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNN 404
               L L  N L  + P  +  N  KL  L +SNN+   I          L++L +S+N 
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 405 LTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI 464
           LT +        I  L + ++S N        ++     +  LD S N     ++     
Sbjct: 183 LTHVDLSL----IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS----INVVRGP 229

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
               L  L +  NN         +N   L  + L  N     +    +    L  L ISN
Sbjct: 230 VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           N L   +  +      L VL +S NHL  ++      F +L+ L L  N +  ++  S  
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLS-T 343

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINN 632
             ++ +L L +N         LFR   +    + D     +I  Q+ +
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 55/309 (17%), Positives = 111/309 (35%), Gaps = 21/309 (6%)

Query: 365 MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID 424
           +Q +     + +   +         +  +  + +   N+ +   LP  +    +++  ++
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF 484
           ++    E    Y+      +  L +  N     L          L  L +  N+      
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL--SSL 138

Query: 485 PTYM--NLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYL 541
           P  +  N  +L  L + NN+   +I+     +   L  L +S+N L+ H+   +     L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 194

Query: 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQ 601
               +S N L       +     ++ LD S N +  ++        +  L LQ+N L+  
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTD- 246

Query: 602 IPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661
             + L     L+ +DL  N+    +         L  L +  N L   + +    +  L 
Sbjct: 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 662 ILDLSHNKL 670
           +LDLSHN L
Sbjct: 305 VLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 56/347 (16%), Positives = 114/347 (32%), Gaps = 32/347 (9%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
           ++ LD S N  +             + +L IL L +NN  D    +L     L  ++L Y
Sbjct: 213 VEELDASHNSIN-------VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
           N +  +        ++ L+ L +S N + +    L    +  L+VLDLS N +       
Sbjct: 264 NELEKI-MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQ 320

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255
             F  L+ L + +N +     +  +     L  L L  N+ +     C S     + +  
Sbjct: 321 PQFDRLENLYLDHNSI----VTLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNV-- 369

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE 315
                  +          LE+      + +  +   LL   +   V+     +  R    
Sbjct: 370 -ARPAVDDADQHCKIDYQLEHGLCCKESDK-PYLDRLLQYIALTSVVEKVQRAQGRCSAT 427

Query: 316 NWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLR 375
           + I + Q     +       +      + +   L     +L        +Q    L+ L 
Sbjct: 428 DTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE----QIQQEQLLQGLH 483

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMY 422
              ++    L+  ++  D L     + N +   L +     +++   
Sbjct: 484 AEIDT---NLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA 527

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 4e-10
 Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 46/322 (14%)

Query: 469 LEYLDVSENNFYGHIF--PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHG-LVVLDISNN 525
             + DV  +     ++     + L   + +  KN+    K+ A LL+S   + +L++++ 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 85

Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL- 583
            +             +  L M  N +   +P  +  N   L +L L  N L  S+   + 
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIF 143

Query: 584 -NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLL 641
            N   +  L + NN L  +I    F++ T L  L L  N+    +    +    L    +
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDL--SLIPSLFHANV 199

Query: 642 RGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQ 701
             N L       L     +  LD SHN +N       V +         L  + L     
Sbjct: 200 SYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTIL-----KLQHNNLTDTAW 249

Query: 702 LGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYN 761
           L     +       +DL               ++ +  +   F     L     + +S N
Sbjct: 250 LLNYPGL-----VEVDL-----------SYNELEKIMYHP--FVKMQRLER---LYISNN 288

Query: 762 ELTGEIPSEIGELPKVRALNLS 783
            L   +      +P ++ L+LS
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLS 309

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 51/352 (14%), Positives = 108/352 (30%), Gaps = 25/352 (7%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           + + +  L +  L  +DLS N      E   Y      ++L+ L ++ N    ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
            + +L  L+L +N +  +           L+ L L  N I +    L L     L+ L L
Sbjct: 299 PIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVT----LKLSTHHTLKNLTL 352

Query: 184 SANRISGSLTELAPFRNLKVLGMRNN---------LLNGSVESKGICELKNLTELDLGEN 234
           S N    + +  A FRN+    + +          L +G    +      +     +   
Sbjct: 353 SHNDWDCN-SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411

Query: 235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP---LS 291
           ++  ++            ++   +            L   E L    N  + E       
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471

Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
            +     L+ L  ++ +NLR          +     L      +         + +    
Sbjct: 472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN-LNKVFTHLKERQAFKLRETQARRT 530

Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN 403
            ++           +N    + L       + + Q   +K   ++ L+   N
Sbjct: 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 51/301 (16%), Positives = 105/301 (34%), Gaps = 45/301 (14%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
                  +++             +  +   ++   N+ +       + +F  +++L ++ 
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTL 606
             +E            +Q L +  N +   +   +  N+  +  L L+ N LS  +P  +
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142

Query: 607 FRS-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILD 664
           F +  +L TL + +N    RI D      + L+ L L  N L   + ++L  +  L   +
Sbjct: 143 FHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHAN 198

Query: 665 LSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTL-DLWLFGD 723
           +S+N L+       V  L       D   + +         + +    N  L  L L  +
Sbjct: 199 VSYNLLSTLAIPIAVEEL-------DASHNSI---------NVVRGPVNVELTILKLQHN 242

Query: 724 DYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEI-GELPKVRALNL 782
           +                     N   L     +DLSYNEL  +I      ++ ++  L +
Sbjct: 243 NLTDTAW-------------LLNYPGLVE---VDLSYNELE-KIMYHPFVKMQRLERLYI 285

Query: 783 S 783
           S
Sbjct: 286 S 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (281), Expect = 3e-26
 Identities = 81/427 (18%), Positives = 141/427 (33%), Gaps = 72/427 (16%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
             L  L+ + ++  D  +  +  LT LT L    N I  L+    L+   NL  L    N
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSN 95

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            +++    L +  LT L  L+   N+++    +++    L  L    N L        + 
Sbjct: 96  KLTN----LDVTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTL----TEIDVS 145

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
               LTELD   N    +L   ++    L  LD SFN ++  L   ++    L  L    
Sbjct: 146 HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDT 200

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
           NN   +  L+     + L+       S+ +L   +  P  QL         L  +    L
Sbjct: 201 NNIT-KLDLNQNIQLTFLDC------SSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL 253

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
            +     L      L+       + +NT+L   +         L +       L  LD  
Sbjct: 254 SK--LTTLHCIQTDLL----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ--LYLLDCQ 305

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
              +T                +D+S+N              +L  L L+  +    L+  
Sbjct: 306 AAGIT---------------ELDLSQN-------------PKLVYLYLNNTE----LTEL 333

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLD 521
            V     L+ L     +     F +   +  L   +          K  L N+   + + 
Sbjct: 334 DVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNN--SLTIA 389

Query: 522 ISNNLLS 528
           +S +LL 
Sbjct: 390 VSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 72/356 (20%), Positives = 124/356 (34%), Gaps = 54/356 (15%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              L  L  + N           D S +   L  L  + N   +  L  +  LT LT LN
Sbjct: 63  LTGLTKLICTSNNI------TTLDLSQN-TNLTYLACDSNKLTN--LD-VTPLTKLTYLN 112

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
              N++  L+ S        L  LN + N ++     + + + T L  LD   N+    L
Sbjct: 113 CDTNKLTKLDVS----QNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITKL 164

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
            ++ P   L  L    N +        + + K L  L+   NN+  +L   L+  I L  
Sbjct: 165 -DVTPQTQLTTLDCSFNKI----TELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTN----------------H 296
           LD S N L+  +   +  LT L Y   S N    E  +S L+                  
Sbjct: 217 LDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLT 272

Query: 297 SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL 356
            N +++  +     ++K  +     QL +L      +  +      +    +L L++ +L
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK--LVYLYLNNTEL 330

Query: 357 VGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQN 412
                   + +NTKL+ L   N        + K+    L +   +      M  + 
Sbjct: 331 T-ELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNFEAEGQTITMPKET 380

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 75/451 (16%), Positives = 139/451 (30%), Gaps = 51/451 (11%)

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            N          ++         L  L  LD   + ++ ++   I  LT L  L  + NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ 343
                 LS  T   NL  L      + +L   +  P  +L  L      L  +       
Sbjct: 76  IT-TLDLSQNT---NLTYLAC---DSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL 128

Query: 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN 403
               +L+ + N L        + +NT+L  L    N     L +       L  LD S N
Sbjct: 129 --LTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDCSFN 180

Query: 404 NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV 463
            +T +         + L  ++   NN    +   + +  +L  LD S NK    L+   V
Sbjct: 181 KITELDVSQN----KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNK----LTEIDV 229

Query: 464 IRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523
                L Y D S N            L++L  L+                   L+     
Sbjct: 230 TPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ---LIYFQAE 283

Query: 524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL 583
                  +   + + + L +L      +     + ++   +L  L L+   L     + L
Sbjct: 284 GCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL-----TEL 333

Query: 584 NLS---SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLL 640
           ++S    +  L   N  +     S++ +   L      + +      + + N      + 
Sbjct: 334 DVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTN--NSLTIA 389

Query: 641 LRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671
           +  + L         +    G+ D + N + 
Sbjct: 390 VSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 47/277 (16%), Positives = 91/277 (32%), Gaps = 31/277 (11%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
            +      P  +L  LD S N     + ++       +K L  LN + NN     L  LN
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELDVSQ-------NKLLNRLNCDTNNITK--LD-LN 209

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
               LT L+   N++  ++    +  L  L   + S N ++     L +  L+ L  L  
Sbjct: 210 QNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHC 261

Query: 184 SANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC 243
               +     +L     L             ++   +     L  LD     +  +L   
Sbjct: 262 IQTDLLE--IDLTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT-ELD-- 313

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLL 303
           LS    L  L ++   L+  L   +++ T L+ L+  + + Q    +  +   +N     
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAE 370

Query: 304 LKVSS--NLRLKTENWIPTFQLKVLQLPNCNLKVIPS 338
            +  +     L   +        +L      + + P 
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 25/256 (9%)

Query: 426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP 485
           +    +     S  ++  L  LD   +  +     T + +   L  L  + NN       
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNITTLDLS 82

Query: 486 TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 545
                T L +L   +N  T      L     L  L+   N L+  +   +     L  L 
Sbjct: 83  ---QNTNLTYLACDSNKLTNLDVTPLTK---LTYLNCDTNKLT-KLD--VSQNPLLTYLN 133

Query: 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPST 605
            ++N L     + +++  QL  LD   N+    +  +   + +  L    N ++      
Sbjct: 134 CARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFNKITE---LD 186

Query: 606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665
           + ++  L  L+   N    ++   +N + +L  L    N L     I +  L +L   D 
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDC 240

Query: 666 SHNKLNGSIPSCFVNM 681
           S N L     S    +
Sbjct: 241 SVNPLTELDVSTLSKL 256

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 1e-25
 Identities = 53/362 (14%), Positives = 113/362 (31%), Gaps = 61/362 (16%)

Query: 96  DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKA 155
                S   + L    +         L+        +         + +   AN  N + 
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR-----NRWHSAWRQANSNNPQI 60

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSV 215
              +   + + A  L          L+L +      L +                     
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV----PLPQF-------------------- 96

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLE 275
                  L +L  + +    L  +LP  +    GL+ L ++ N L   LP+ IA+L  L 
Sbjct: 97  -PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 276 YLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKV 335
            L++       E P  L +  ++ E   L                  L+ L+L    ++ 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLV----------------NLQSLRLEWTGIRS 197

Query: 336 IPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF-----SGILQLPKV 390
           +P+ + +  + K L + ++ L       +  +  KLE L L   +               
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAP- 254

Query: 391 KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLS 450
               L+ L + + +    LP ++   + +L  +D+        +P  I ++    ++ + 
Sbjct: 255 ----LKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 451 RN 452
            +
Sbjct: 310 PH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 4e-25
 Identities = 63/361 (17%), Positives = 102/361 (28%), Gaps = 67/361 (18%)

Query: 149 NLRNLKALNLSWNGISSGATRL-----GLGNLTNLEVLDLSANRISGSLTELAPFRNLKV 203
           +    + L         G+T L      L         D +    +          N ++
Sbjct: 10  HSSGRENLYFQ------GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS---NNPQI 60

Query: 204 LGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGN 263
                  L  + +            L+L    L  Q P     L  L+ + I    L   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 264 LPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQL 323
           LP  +     LE L L+ N  +   P S+               ++L           +L
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASI---------------ASLN----------RL 152

Query: 324 KVLQLPNCN-LKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS 382
           + L +  C  L  +P  L                  +     + N   L+ LRL      
Sbjct: 153 RELSIRACPELTELPEPL-------------ASTDASGEHQGLVN---LQSLRLEWTGIR 196

Query: 383 GILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE 440
               LP    +L  L+ L I N+ L+  L   +   + KL  +D+       N P   G 
Sbjct: 197 ---SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH-LPKLEELDLRGCTALRNYPPIFGG 251

Query: 441 MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN 500
              L  L L        L    + R   LE LD+        +      L     + +  
Sbjct: 252 RAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 501 N 501
           +
Sbjct: 311 H 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 2e-23
 Identities = 52/338 (15%), Positives = 99/338 (29%), Gaps = 30/338 (8%)

Query: 323 LKVLQLPNCN-LKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
            + L       L+     L         D +              N+   ++   +  + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRAL 68

Query: 382 SGIL-QLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE 440
                 L          L++ +  L    P      +  L ++ I        +P ++ +
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 441 MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN 500
              L  L L+RN     L A S+     L  L +               LT+L       
Sbjct: 126 FAGLETLTLARNPLR-ALPA-SIASLNRLRELSIRACP----------ELTEL-----PE 168

Query: 501 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 560
              +            L  L +    +   +P  I N   L  L +  + L   +   I+
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 561 NFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619
           +  +L+ LDL       +        + +  L L++ +    +P  + R T+L  LDLR 
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 620 NKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQL 657
                R+P  I       ++L+  +             
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 6e-23
 Identities = 54/260 (20%), Positives = 90/260 (34%), Gaps = 23/260 (8%)

Query: 71  LPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTT 130
                   L+L       + +      +     L+ + ++       +   +     L T
Sbjct: 78  ATQPGRVALELRSVPLPQFPD-----QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLET 131

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWN--------GISSGATRLGLGNLTNLEVLD 182
           L L  N +  L  S  +A+L  L+ L++            ++S         L NL+ L 
Sbjct: 132 LTLARNPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           L    I      +A  +NLK L +RN+ L+    +  I  L  L ELDL         P 
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELDLRGCTALRNYPP 247

Query: 243 CLSDLIGLKVLDIS-FNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
                  LK L +   ++L   LP  I  LT LE L L         P   +       +
Sbjct: 248 IFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCI 305

Query: 302 LLLKVSSNLRLKTENWIPTF 321
           +L+    +L+ + +   P  
Sbjct: 306 ILV--PPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 1e-22
 Identities = 55/323 (17%), Positives = 93/323 (28%), Gaps = 53/323 (16%)

Query: 67  FSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLT 126
           +             +            D     +      L L               L+
Sbjct: 46  WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 127 SLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL--GLGNLTNLEVLDLS 184
            L  + +    +  L  +  +     L+ L L+ N + +    L   + +L  L  L + 
Sbjct: 105 HLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRA----LPASIASLNRLRELSIR 158

Query: 185 ANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244
           A      LTEL               L  +  S     L NL  L L    +   LP  +
Sbjct: 159 ACP---ELTELPEP------------LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 245 SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           ++L  LK L I  + LS  L   I +L  LE L L        +P               
Sbjct: 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF------------ 249

Query: 305 KVSSNLRLKTENWIPTFQLKVLQLPNCN-LKVIPSFLLHQYDFKFLDLSSNKLVGNFPTW 363
                             LK L L +C+ L  +P  +      + LDL     +   P+ 
Sbjct: 250 ---GGRA----------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 364 LMQNNTKLEVLRLSNNSFSGILQ 386
           +        ++ +  +  + + Q
Sbjct: 297 I-AQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 45/297 (15%), Positives = 96/297 (32%), Gaps = 20/297 (6%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
             +L    +         +    Q+    D ++ +      +         +   +    
Sbjct: 14  RENLYFQGSTALRPYHDVLS-QWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
                            L++               L+ L+ + +       ++   +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVL-LMSKNHLE--------GNIPVQINNFRQL 565
            GL  L ++ N L   +P  I + + L  L + +   L          +   +      L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 566 QLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG 624
           Q L L    +  S+ +S+ NL ++  L ++N+ LS  +   +    +L  LDLR      
Sbjct: 186 QSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
             P      + L+ L+L+       +P+ + +L +L  LDL        +PS    +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 53/326 (16%), Positives = 103/326 (31%), Gaps = 26/326 (7%)

Query: 295 NHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSN 354
           + S  E L  + S+ L           Q +     + N         +  + +    +  
Sbjct: 10  HSSGRENLYFQGSTAL---RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 355 KLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQN 412
            L                 L L +       Q P     L  L+H+ I    L   LP  
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLME-LPDT 122

Query: 413 MGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNK--------FSGDLSATSVI 464
           M      L  + +++N     +P SI  +  L  L +             +   ++    
Sbjct: 123 MQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 465 RCASLEYLDVSENNFYGHIFPTYM-NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523
              +L+ L +          P  + NL  L+ L ++N+  +  +   + +   L  LD+ 
Sbjct: 181 GLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 524 NNLLSGHIPCWIGNFSYLDVL-LMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
                 + P   G  + L  L L   ++L   +P+ I+   QL+ LDL        + S 
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 583 L-NLSSIMHLYLQNNALSGQIPSTLF 607
           +  L +   + +  +  +        
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 5e-16
 Identities = 54/307 (17%), Positives = 95/307 (30%), Gaps = 63/307 (20%)

Query: 489 NLTQLRWLYLKNNHFTGKIKA-GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547
           N    +                      G V L++ +  L    P      S+L  + + 
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID 112

Query: 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL 606
              L   +P  +  F  L+ L L+ N L  ++ +S+ +L+ +  L ++      ++P  L
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 607 FRS---------TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQL 657
             +           L +L L        +P  I N   L+ L +R + L   +  A+  L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 658 QKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLD 717
            KL  LDL       + P  F                        GG   +         
Sbjct: 229 PKLEELDLRGCTALRNYPPIF------------------------GGRAPLKR------- 257

Query: 718 LWLFGDDYIT-LPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPK 776
           L L     +  LP             + +  + L  +   DL        +PS I +LP 
Sbjct: 258 LILKDCSNLLTLPL------------DIHRLTQLEKL---DLRGCVNLSRLPSLIAQLPA 302

Query: 777 VRALNLS 783
              + + 
Sbjct: 303 NCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 8e-14
 Identities = 47/336 (13%), Positives = 99/336 (29%), Gaps = 71/336 (21%)

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLD 521
                +  E L    +            L+Q +  Y  + +          NS+   +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHD---VLSQWQRHYNADRNRWHSAWR-QANSNNPQIET 62

Query: 522 ISNNLLSGHIPCWIGNFSY--LDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
            +   L       + + +      L +    L    P Q      LQ + +    L   +
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MEL 119

Query: 580 ASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSE--- 635
             ++   + +  L L  N L   +P+++     L  L +R       +P+ + +      
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 636 ------LRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNG 689
                 L+ L L    ++  +P ++  LQ L  L + ++ L+ ++               
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP------------- 223

Query: 690 DLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYIT-LPQRARVQFVTKNRYEFYNGS 748
                       +  L  +         L L G   +   P              F   +
Sbjct: 224 -----------AIHHLPKLEE-------LDLRGCTALRNYP------------PIFGGRA 253

Query: 749 NLNYMSGIDLS-YNELTGEIPSEIGELPKVRALNLS 783
            L  +    L   + L   +P +I  L ++  L+L 
Sbjct: 254 PLKRL---ILKDCSNLL-TLPLDIHRLTQLEKLDLR 285

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 1e-25
 Identities = 62/375 (16%), Positives = 114/375 (30%), Gaps = 58/375 (15%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
             +L++  +      +            +  L +  NN     LP       L TL +  
Sbjct: 42  NAVLNVGESGLTTLPDC-------LPAHITTLVIPDNNLTS--LP--ALPPELRTLEVSG 90

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
           N++  L        L  L   +     + +          + L  L +  N+++ SL  L
Sbjct: 91  NQLTSLPVL--PPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLT-SLPVL 139

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255
                L+ L + +N L              L +L    N L   LP   S   GL+ L +
Sbjct: 140 --PPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLT-SLPMLPS---GLQELSV 188

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE 315
           S N L+ +LP++ + L  L      +N      P       S L+ L++   S  RL + 
Sbjct: 189 SDNQLA-SLPTLPSELYKLW---AYNNRLT-SLPALP----SGLKELIV---SGNRLTS- 235

Query: 316 NWIPTF--QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEV 373
             +P    +LK L +    L  +P           L +  N+L    P  L+ + +    
Sbjct: 236 --LPVLPSELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLI-HLSSETT 288

Query: 374 LRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGN 433
           + L  N  S   +        +      +  +            +       + +     
Sbjct: 289 VNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 434 IPYSIGEMKELFLLD 448
                       +  
Sbjct: 346 REGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (269), Expect = 2e-24
 Identities = 73/414 (17%), Positives = 127/414 (30%), Gaps = 62/414 (14%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
               +LN+  +      LP       +TTL +  N +  L           L+ L +S N
Sbjct: 40  NGNAVLNVGESGLTT--LP-DCLPAHITTLVIPDNNLTSLPAL-----PPELRTLEVSGN 91

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            ++S         L  L +       +    +       L  L +  N L          
Sbjct: 92  QLTSLPV--LPPGLLELSIFSNPLTHLPALPS------GLCKLWIFGNQLTSLPV----- 138

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
               L EL + +N L   LP   +    L  L    N L+ +LP + + L  L    +SD
Sbjct: 139 LPPGLQELSVSDNQLA-SLP---ALPSELCKLWAYNNQLT-SLPMLPSGLQELS---VSD 190

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
           N      P       S L  L      N RL +   +P+  LK L +    L  +P    
Sbjct: 191 NQLA-SLPTLP----SELYKLWA---YNNRLTSLPALPS-GLKELIVSGNRLTSLPVLPS 241

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS----GILQLPKVKHDLLRH 397
                K L +S N+L     T L    + L  L +  N  +     ++ L          
Sbjct: 242 E---LKELMVSGNRL-----TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSS-----ETT 288

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
           +++  N L+          ++++                     +E   L L+   +   
Sbjct: 289 VNLEGNPLS-ERTLQ---ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGL 511
                             +N      F  +++       ++K+  F  +I + L
Sbjct: 345 AREGEPAPADRWHMFGQEDNA---DAFSLFLDRLSETENFIKDAGFKAQISSWL 395

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (263), Expect = 1e-23
 Identities = 71/356 (19%), Positives = 119/356 (33%), Gaps = 55/356 (15%)

Query: 148 ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMR 207
                   LN+  +G+    T L      ++  L +  N ++ SL  L     L+ L + 
Sbjct: 37  CLNNGNAVLNVGESGL----TTLPDCLPAHITTLVIPDNNLT-SLPAL--PPELRTLEVS 89

Query: 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
            N L  +        L  L+       +L            GL  L I  N L+ +LP +
Sbjct: 90  GNQL--TSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVL 139

Query: 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT--FQLKV 325
              L  L    +SDN      P       S L  L      N +L +   +P     L+ 
Sbjct: 140 PPGLQELS---VSDNQLA-SLPALP----SELCKLWA---YNNQLTS---LPMLPSGLQE 185

Query: 326 LQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGIL 385
           L + +  L  +P+          L   +N+L     T L    + L+ L +S N  + + 
Sbjct: 186 LSVSDNQLASLPTLPSE---LYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLTSLP 237

Query: 386 QLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELF 445
            LP      L+ L +S N LT  LP         L+ + + +N     +P S+  +    
Sbjct: 238 VLP----SELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 446 LLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
            ++L  N     LS  ++     +                      + R L+L   
Sbjct: 288 TVNLEGNP----LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 2e-23
 Identities = 64/338 (18%), Positives = 110/338 (32%), Gaps = 49/338 (14%)

Query: 368 NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK 427
           N    VL +  +   G+  LP      +  L I +NNLT  LP        +L  +++S 
Sbjct: 39  NNGNAVLNVGES---GLTTLPDCLPAHITTLVIPDNNLTS-LPALPP----ELRTLEVSG 90

Query: 428 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTY 487
           N    ++P     + EL +            S         L  L +  N       P  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQL--TSLPV- 138

Query: 488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547
                L+ L + +N     + A       L  L   NN L+  +P        L V   S
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELSV---S 189

Query: 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIAS--SLNLS------------SIMHLYL 593
            N L  ++P   +   +L   +     L    +    L +S             +  L +
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMV 248

Query: 594 QNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA 653
             N L+  +P      + LL+L +  N+   R+P+ + + S    + L GN L  +   A
Sbjct: 249 SGNRLT-SLPMLP---SGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 654 LCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDL 691
           L ++           + + +  S             D 
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 8e-23
 Identities = 78/399 (19%), Positives = 135/399 (33%), Gaps = 60/399 (15%)

Query: 227 TELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
            E   G   +  ++  CL++  G  VL++  + L+  LP  +     +  L + DNN   
Sbjct: 21  AEESRGRAAVVQKMRACLNN--GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT- 74

Query: 287 EFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF-----QLKVLQLPNCNLKVIPSFLL 341
               SL      L  L +   S  +L +   +P       +L +   P  +L  +PS L 
Sbjct: 75  ----SLPALPPELRTLEV---SGNQLTS---LPVLPPGLLELSIFSNPLTHLPALPSGL- 123

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
                  L +  N+L  + P         L+ L +S+N  + +  LP      L  L   
Sbjct: 124 -----CKLWIFGNQL-TSLPVLP----PGLQELSVSDNQLASLPALPS----ELCKLWAY 169

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
           NN LT  LP         L  + +S N    ++P    E+ +L+  +          S  
Sbjct: 170 NNQLT-SLPML----PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS-- 221

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLD 521
                  L+ L VS N       P     ++L+ L +  N  T  +         L+ L 
Sbjct: 222 ------GLKELIVSGNRL--TSLPV--LPSELKELMVSGNRLT-SLPMLPSG---LLSLS 267

Query: 522 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIAS 581
           +  N L+  +P  + + S    + +  N L       +              R   + AS
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 582 SLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
           +   +  +HL    + L          +         DN
Sbjct: 327 APRETRALHL-AAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 81/425 (19%), Positives = 134/425 (31%), Gaps = 99/425 (23%)

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
            C       L++GE+ L   LP CL     +  L I  N+L+ +LP++   L +LE   +
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---V 88

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
           S N      P+                   L           +L +   P  +L  +PS 
Sbjct: 89  SGNQLT-SLPVLP---------------PGLL----------ELSIFSNPLTHLPALPSG 122

Query: 340 LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD 399
           L        L +  N+L  + P         L+ L +S+N  + +  LP      L  L 
Sbjct: 123 L------CKLWIFGNQL-TSLPVLP----PGLQELSVSDNQLASLPALPS----ELCKLW 167

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
             NN LT  LP         L  + +S N    ++P    E+ +L+  +          S
Sbjct: 168 AYNNQLT-SLPML----PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS 221

Query: 460 ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVV 519
                    L+ L VS N       P     ++L+ L +  N  T               
Sbjct: 222 --------GLKELIVSGNRL--TSLPV--LPSELKELMVSGNRLT--------------- 254

Query: 520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
                      +P        L  L + +N L   +P  + +      ++L  N L    
Sbjct: 255 ----------SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 580 ASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVL 639
             +L   +    Y           ++  R T  L L   D      +P +    +     
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL----VPAREGEPAPADRW 356

Query: 640 LLRGN 644
            + G 
Sbjct: 357 HMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 61/293 (20%), Positives = 101/293 (34%), Gaps = 65/293 (22%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
             EL+ L++SGN                  +L I +    +     LP L   + L  L 
Sbjct: 80  PPELRTLEVSGNQL-----TSLPVLPPGLLELSIFSNPLTH-----LPAL--PSGLCKLW 127

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISS------GATRLGLGN---------LTN 177
           ++ N++  L           L+ L++S N ++S         +L   N          + 
Sbjct: 128 IFGNQLTSLPVL-----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSG 182

Query: 178 LEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE 237
           L+ L +S N+++ SL  L     L  L   NN L  S+ +        L EL +  N L 
Sbjct: 183 LQELSVSDNQLA-SLPTL--PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLT 234

Query: 238 GQLPWCLSDLIGL-----------------KVLDISFNHLSGNLPSVIANLTSLEYLALS 280
             LP   S+L  L                   L +  N L+  LP  + +L+S   + L 
Sbjct: 235 -SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 281 DNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL 333
            N      PLS  T  +  E+      S   ++ +    +   +   L     
Sbjct: 293 GN------PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 58/307 (18%), Positives = 101/307 (32%), Gaps = 66/307 (21%)

Query: 490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 549
                 L +  +  T  +   L     +  L I +N L+  +P        L+V   S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLEV---SGN 91

Query: 550 HLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS 609
            L  ++PV      +L +       L          S +  L++  N L+  +P      
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL------PALPSGLCKLWIFGNQLT-SLPVLP--- 140

Query: 610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK 669
             L  L + DN+    +P   +    L  L    N L   +P+    LQ+L    +S N+
Sbjct: 141 PGLQELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQ 192

Query: 670 LNGSIPSCFVNMLFWREGNGDLYGSGLYIYF---QLGGLHSIGTYYN--STLD------- 717
           L  S+P+    +         L+     +        GL  +    N  ++L        
Sbjct: 193 LA-SLPTLPSELYK-------LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244

Query: 718 -LWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPK 776
            L + G+   +LP                  S L     + +  N+LT  +P  +  L  
Sbjct: 245 ELMVSGNRLTSLPMLP---------------SGLLS---LSVYRNQLT-RLPESLIHLSS 285

Query: 777 VRALNLS 783
              +NL 
Sbjct: 286 ETTVNLE 292

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.9 bits (184), Expect = 5e-14
 Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
                  L+V E+       P  +    +  L + +N+ T  + A       L  L++S 
Sbjct: 38  LNNGNAVLNVGESGL--TTLPDCL-PAHITTLVIPDNNLT-SLPALPPE---LRTLEVSG 90

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           N L+  +P        L +      HL             L  L +  N+L         
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPVLPPG 142

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           L     L + +N L+  +P+     +EL  L   +N+    +P   +    L+ L +  N
Sbjct: 143 LQE---LSVSDNQLA-SLPALP---SELCKLWAYNNQL-TSLPMLPSG---LQELSVSDN 191

Query: 645 YLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
            L   +P    +L KL   +     L      
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSLPALPSG 222

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (266), Expect = 2e-25
 Identities = 67/265 (25%), Positives = 100/265 (37%), Gaps = 33/265 (12%)

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS-GATRLGLGNLTNLEVL 181
              +S T L L  N++  L        L  L  L+LS NG+S  G         T+L+ L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 182 DLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
           DLS N +                            S     L+ L  LD   +NL+    
Sbjct: 84  DLSFNGVITM-------------------------SSNFLGLEQLEHLDFQHSNLKQMSE 118

Query: 242 WCL-SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE 300
           + +   L  L  LDIS  H       +   L+SLE L ++ N+FQ  F   + T   NL 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 301 VLLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLL-HQYDFKFLDLSSNKLV 357
            L L  S     +L    +     L+VL + + N   + +F        + LD S N ++
Sbjct: 179 FLDL--SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFS 382
            +    L    + L  L L+ N F+
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (252), Expect = 2e-23
 Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 11/236 (4%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLP--YLNTLTSLTT 130
                 L+L  N       +  +       +L  L+L+ N  +            TSL  
Sbjct: 27  PSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG 190
           L+L +N +  +  S     L  L+ L+   + +   +      +L NL  LD+S      
Sbjct: 83  LDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR- 139

Query: 191 SLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLI 248
                      +L+VL M  N    +       EL+NLT LDL +  LE   P   + L 
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 249 GLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L+VL++S N+           L SL+ L  S N+        L    S+L  L L
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 8/219 (3%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
           F    +L  L LS N            S   +  LK L+L++N    ++      L  L 
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            L+  ++ +  ++      +LRNL  L++S          +    L++LEVL ++ N   
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQ 163

Query: 190 GSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
            +         RNL  L +    L   +       L +L  L++  NN      +    L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 248 IGLKVLDISFNHLSGNLPSVIANL-TSLEYLALSDNNFQ 285
             L+VLD S NH+  +    + +  +SL +L L+ N+F 
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 49/242 (20%), Positives = 75/242 (30%), Gaps = 33/242 (13%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP--TYMNLTQLRWLYLKNNHFT 504
           L+L  NK    L      +   L  L +S N          +    T L++L L  N   
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 564
             + +  L    L  LD  ++ L          F  L                     R 
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSL---------------------RN 127

Query: 565 LQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNK 621
           L  LD+S         + +   LSS+  L +  N+        +F     L  LDL   +
Sbjct: 128 LIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 622 FFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN 680
              ++     N+ S L+VL +  N            L  L +LD S N +  S      +
Sbjct: 187 L-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 681 ML 682
             
Sbjct: 246 FP 247

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 52/263 (19%), Positives = 90/263 (34%), Gaps = 33/263 (12%)

Query: 198 FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ--LPWCLSDLIGLKVLDI 255
             +   L + +N L  S+      +L  LT+L L  N L  +            LK LD+
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE 315
           SFN +   + S    L  LE+L    +N +     S+  +  NL                
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL---------------- 128

Query: 316 NWIPTFQLKVLQLPNCNLKVIPSFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
                     L + + + +V  + + +     + L ++ N    NF   +      L  L
Sbjct: 129 --------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 375 RLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNI 434
            LS      +          L+ L++S+NN    L       +  L  +D S N+     
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 435 PYSI--GEMKELFLLDLSRNKFS 455
                      L  L+L++N F+
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 15/253 (5%)

Query: 330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK 389
           +  L  +P+ +        L+L SNKL  + P  +    T+L  L LS+N  S      +
Sbjct: 16  SKGLTSVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 390 VKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI-GEMKELFL 446
                  L++LD+S N +  M    +G+  ++L ++D   +N +    +S+   ++ L  
Sbjct: 73  SDFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTG 505
           LD+S                +SLE L ++ N+F  +  P  +  L  L +L L       
Sbjct: 131 LDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188

Query: 506 KIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI--NNF 562
           ++     NS   L VL++S+N             + L VL  S NH+      Q   +  
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247

Query: 563 RQLQLLDLSENRL 575
             L  L+L++N  
Sbjct: 248 SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 28/184 (15%)

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 549
           +    L L++N     +  G+ +    L  L +S+N LS    C   +            
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGT-------- 77

Query: 550 HLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS 609
                          L+ LDLS N +    ++ L L  + HL  Q++ L      ++F S
Sbjct: 78  -------------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 610 -TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGN-YLQGQIPIALCQLQKLGILDLS 666
              L+ LD+          + I N  S L VL + GN + +  +P    +L+ L  LDLS
Sbjct: 125 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 667 HNKL 670
             +L
Sbjct: 184 QCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 29/159 (18%)

Query: 64  ILNFSLFLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFN 115
           +  FS+FL  + L  LD+S  +        F+G               L++L +  N+F 
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------LSSLEVLKMAGNSFQ 163

Query: 116 DSVLPY-LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGN 174
           ++ LP     L +LT L+L   ++  L       +L +L+ LN+S N   S  T      
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKC 221

Query: 175 LTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNN 209
           L +L+VLD S N I       L       +L  L +  N
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 562 FRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQ-IPSTLFRS-TELLTLDLR 618
                 L+L  N+L          L+ +  L L +N LS +   S      T L  LDL 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI-ALCQLQKLGILDLSHNKLNGSIPSC 677
            N     +        +L  L  + + L+          L+ L  LD+SH     +    
Sbjct: 87  FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 678 FVNM 681
           F  +
Sbjct: 146 FNGL 149

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 29/125 (23%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
               +F   + L  LDLS                      ++  L+   FN         
Sbjct: 166 FLPDIFTELRNLTFLDLSQC--------------------QLEQLSPTAFNS-------- 197

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           L+SL  LN+ +N    L+       L +L+ L+ S N I +   +      ++L  L+L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 185 ANRIS 189
            N  +
Sbjct: 257 QNDFA 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  108 bits (271), Expect = 1e-24
 Identities = 66/290 (22%), Positives = 112/290 (38%), Gaps = 22/290 (7%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
            +    NL   +  D      N L S+  +    + I  +   QG+  L N+  L L+ N
Sbjct: 21  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGN 75

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            ++       L NL NL  L L  N+I   L+ L   + LK L + +N ++   +  G+ 
Sbjct: 76  KLTDIK---PLTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGIS---DINGLV 128

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
            L  L  L LG N +       LS L  L  L +  N +S ++   +A LT L+ L LS 
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 184

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
           N+      L  L    NL+VL L     L     +         ++  + +L   P  + 
Sbjct: 185 NHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIIS 240

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVK 391
              D++  ++  +     F   +     +   +  +   F G +  P  +
Sbjct: 241 DDGDYEKPNVKWHLP--EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (269), Expect = 2e-24
 Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 24/232 (10%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
           F E    +L            D  +      +  +  N ++     +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKK------SVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  N++  + P   L NL+NL  L L  N I   +    L +L  L+ L L  N IS  +
Sbjct: 72  LNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGIS-DI 124

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
             L     L+ L + NN +    +   +  L  L  L L +N +   +P  L+ L  L+ 
Sbjct: 125 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP--LSLLTNHSNLEVL 302
           L +S NH+S +L + +A L +L+ L L       +     S L   + ++  
Sbjct: 180 LYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (268), Expect = 3e-24
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              +  +  + +        K          +  L LN N   D  +  L  L +L  L 
Sbjct: 42  LNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLF 93

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  N+I  L     L +L+ LK+L+L  NGIS      GL +L  LE L L  N+I+  +
Sbjct: 94  LDENKIKDL---SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKIT-DI 146

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
           T L+    L  L + +N ++   +   +  L  L  L L +N++       L+ L  L V
Sbjct: 147 TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDV 201

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRL 312
           L++          +  +NL     +  +D +      +S   ++    V          +
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 313 KTENWIPT 320
               + P 
Sbjct: 262 SFIFYQPV 269

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (250), Expect = 4e-22
 Identities = 55/331 (16%), Positives = 108/331 (32%), Gaps = 49/331 (14%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
           +              +   +        NL    +           L ++  +  + + I
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI 55

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
            S     G+  L N+  L L+ N+++  +  L   +NL  L +  N +    +   + +L
Sbjct: 56  KSVQ---GIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIK---DLSSLKDL 108

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
           K L  L L  N +       L  L  L+ L +  N ++    +V++ LT L+ L+L DN 
Sbjct: 109 KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 164

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ 343
                PL+ LT                            L+ L L   ++  +   L   
Sbjct: 165 ISDIVPLAGLTK---------------------------LQNLYLSKNHISDL-RALAGL 196

Query: 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL----PKVKHDLLRHLD 399
            +   L+L S + +         N      ++ ++ S      +       K ++  HL 
Sbjct: 197 KNLDVLELFSQECLNKPINHQ-SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
              N ++ +  Q + I   K  +        
Sbjct: 256 EFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 6e-13
 Identities = 49/357 (13%), Positives = 104/357 (29%), Gaps = 95/357 (26%)

Query: 178 LEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE 237
           +      +  I   +     F       ++   +  +V      EL ++ ++    ++++
Sbjct: 1   MGETITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIK 56

Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
             +   +  L  +  L ++ N L+ ++   + NL +L +L L +N  +    L  L    
Sbjct: 57  -SVQ-GIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKK-- 110

Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLV 357
                                    LK L L +  +  I                     
Sbjct: 111 -------------------------LKSLSLEHNGISDINGL------------------ 127

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVI 417
                    +  +LE L L NN  + I  L ++    L  L + +N ++           
Sbjct: 128 --------VHLPQLESLYLGNNKITDITVLSRLTK--LDTLSLEDNQIS----------- 166

Query: 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
                 DI            +  + +L  L LS+N  S DL A  +    +L+ L++   
Sbjct: 167 ------DIV----------PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQ 207

Query: 478 NFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW 534
                      NL     +   +          + +       ++  +L        
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 6e-13
 Identities = 45/277 (16%), Positives = 105/277 (37%), Gaps = 21/277 (7%)

Query: 371 LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
           +      +     I              ++   ++T  + QN    +  +  I  + ++ 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAE--TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDI 55

Query: 431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNL 490
           + ++   I  +  +  L L+ NK +       +    +L +L + EN        +  +L
Sbjct: 56  K-SVQ-GIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKI--KDLSSLKDL 108

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
            +L+ L L++N  +  I  GL++   L  L + NN ++  I   +   + LD L +  N 
Sbjct: 109 KKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164

Query: 551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRST 610
           +  +I   +    +LQ L LS+N +   + +   L ++  L L +     +  +      
Sbjct: 165 IS-DIV-PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
              T+   D       P+ I++  +     ++ +  +
Sbjct: 222 VPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 2e-09
 Identities = 44/218 (20%), Positives = 93/218 (42%), Gaps = 15/218 (6%)

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
             A     ++ + +       T   L  +  +   N+     ++ G+     +  L ++ 
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 74

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           N L+   P  + N   L  L + +N ++ ++   + + ++L+ L L  N +   I   ++
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGI-SDINGLVH 129

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           L  +  LYL NN ++    + L R T+L TL L DN+        +   ++L+ L L  N
Sbjct: 130 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN 185

Query: 645 YLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
           ++   +  AL  L+ L +L+L   +      +   N++
Sbjct: 186 HIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 3e-09
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 14/197 (7%)

Query: 474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC 533
           ++ +     IFP      +     LK    T  +    LNS  +  +  +N+ +   +  
Sbjct: 5   ITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQG 60

Query: 534 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYL 593
            I     +  L ++ N L  +I   + N + L  L L EN++   ++S  +L  +  L L
Sbjct: 61  -IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSL 116

Query: 594 QNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA 653
           ++N +S  I + L    +L +L L +NK        ++  ++L  L L  N +   +P+A
Sbjct: 117 EHNGIS-DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLA 172

Query: 654 LCQLQKLGILDLSHNKL 670
              L KL  L LS N +
Sbjct: 173 --GLTKLQNLYLSKNHI 187

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 2e-24
 Identities = 68/340 (20%), Positives = 110/340 (32%), Gaps = 73/340 (21%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
                L+L  N+I  +       NL+NL  L L  N IS  +       L  LE L LS 
Sbjct: 52  PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSK 109

Query: 186 NRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL--P 241
           N+    L EL     + L+ L +  N +   V       L  +  ++LG N L+      
Sbjct: 110 NQ----LKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
                +  L  + I+  +++  +P       SL  L L  N    +   + L   +NL  
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAK 220

Query: 302 LLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGN 359
           L L  S N    +   +   T  L+ L L N  L  +P  L                   
Sbjct: 221 LGL--SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL------------------- 259

Query: 360 FPTWLMQNNTKLEVLRLSNNSFSGI----LQLPKVKHDL--LRHLDISNNNLTGMLPQNM 413
                  ++  ++V+ L NN+ S I       P           + + +N +        
Sbjct: 260 ------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ------- 306

Query: 414 GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 453
                   Y +I  + F          +     + L   K
Sbjct: 307 --------YWEIQPSTFRC--------VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 34/249 (13%)

Query: 70  FLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY 121
           F   + L  L L  N         F                KL+ L L+ N      LP 
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAP------------LVKLERLYLSKNQL--KELP- 116

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLG-LGNLTNLEV 180
                +L  L ++ N I  +  S     L  +  + L  N + S     G    +  L  
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 181 LDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           + ++   I+ ++ +     +L  L +  N +   V++  +  L NL +L L  N++    
Sbjct: 176 IRIADTNIT-TIPQGL-PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ----GEF-PLSLLTN 295
              L++   L+ L ++ N L   +P  +A+   ++ + L +NN       +F P    T 
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 296 HSNLEVLLL 304
            ++   + L
Sbjct: 292 KASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 70/313 (22%), Positives = 123/313 (39%), Gaps = 27/313 (8%)

Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
            L+V+Q  +  L+ +P  L    D   LDL +NK+         +N   L  L L NN  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 382 SGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIG 439
           S I   P     L  L  L +S N L   LP+ M    + L  + + +N           
Sbjct: 89  SKIS--PGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFN 142

Query: 440 EMKELFLLDLSRNKF-SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
            + ++ +++L  N   S  +   +      L Y+ +++ N      P  +    L  L+L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--TTIPQGL-PPSLTELHL 199

Query: 499 KNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 557
             N  T K+ A  L   + L  L +S N +S      + N  +L  L ++ N L   +P 
Sbjct: 200 DGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 558 QINNFRQLQLLDLSENRL-------FGSIASSLNLSSIMHLYLQNNALS-GQIPSTLFRS 609
            + + + +Q++ L  N +       F     +   +S   + L +N +   +I  + FR 
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 610 -TELLTLDLRDNK 621
                 + L + K
Sbjct: 318 VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 9e-21
 Identities = 64/311 (20%), Positives = 104/311 (33%), Gaps = 36/311 (11%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
             +  +LDL  N               + K L  L L  N  +         L  L  L 
Sbjct: 51  PPDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  N++  L         + L+ L +  N I+     +    L  + V++L  N +  S 
Sbjct: 107 LSKNQLKELPEKM----PKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSG 161

Query: 193 TELAPFR---NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIG 249
            E   F+    L  + + +  +  +   +G+    +LTEL L  N +       L  L  
Sbjct: 162 IENGAFQGMKKLSYIRIADTNI--TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309
           L  L +SFN +S      +AN   L  L L++N    + P   L +H  ++V+ L     
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYL----- 270

Query: 310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL-VGNFPTWLMQNN 368
                 N I          P  N K         Y    + L SN +          +  
Sbjct: 271 ----HNNNISAIGSNDFCPPGYNTK------KASY--SGVSLFSNPVQYWEIQPSTFRCV 318

Query: 369 TKLEVLRLSNN 379
                ++L N 
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%)

Query: 446 LLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFT 504
           LLDL  NK + ++         +L  L +  N     I P  +  L +L  LYL  N   
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK 113

Query: 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD---VLLMSKNHL-EGNIPVQI- 559
            ++   +  +  L  L +  N ++  +      F+ L+   V+ +  N L    I     
Sbjct: 114 -ELPEKMPKT--LQELRVHENEIT-KVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 560 NNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLR 618
              ++L  + +++  +  +I   L   S+  L+L  N ++ ++ +   +    L  L L 
Sbjct: 168 QGMKKLSYIRIADTNI-TTIPQGL-PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 619 DNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671
            N     + +    N   LR L L  N L  ++P  L   + + ++ L +N ++
Sbjct: 225 FNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 50/222 (22%), Positives = 82/222 (36%), Gaps = 18/222 (8%)

Query: 467 ASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISN 524
                LD+  N     I    + NL  L  L L NN  + KI  G       L  L +S 
Sbjct: 52  PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASS- 582
           N L   +P        L  L + +N +   +   + N   Q+ +++L  N L  S   + 
Sbjct: 110 NQLK-ELP--EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 583 --LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI-NNHSELRVL 639
               +  + ++ + +  ++  IP  L  S  L  L L  NK   ++        + L  L
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKI-TKVDAASLKGLNNLAKL 221

Query: 640 LLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
            L  N +      +L     L  L L++NKL   +P    + 
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 44/217 (20%), Positives = 83/217 (38%), Gaps = 28/217 (12%)

Query: 68  SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTS 127
           S+F    ++ +++L  N     +   +  +    KKL  + +   N   + +P      S
Sbjct: 139 SVFNGLNQMIVVELGTNPLK--SSGIENGAFQGMKKLSYIRIADTNI--TTIP-QGLPPS 193

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANR 187
           LT L+L  N+I  +  +  L  L NL  L LS+N IS+      L N  +L  L L+ N+
Sbjct: 194 LTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNK 251

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
           +      LA  + ++V+ + NN ++ ++ S   C                   P   +  
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCP------------------PGYNTKK 292

Query: 248 IGLKVLDISFNHLSGNL--PSVIANLTSLEYLALSDN 282
                + +  N +      PS    +     + L + 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 47/296 (15%), Positives = 99/296 (33%), Gaps = 60/296 (20%)

Query: 492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
            LR +   +     K+   L       +LD+ NN ++        N   L  L++  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 552 EGNIPVQI-NNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS- 609
              I         +L+ L LS+N+L   +   +   ++  L +  N ++ ++  ++F   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQL-KELPEKM-PKTLQELRVHENEIT-KVRKSVFNGL 144

Query: 610 TELLTLDLRDNKF-FGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSH 667
            +++ ++L  N      I +       +L  + +    +   IP  L     L  L L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 201

Query: 668 NKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYIT 727
           NK+   + +              L G        L  L            L L  +    
Sbjct: 202 NKIT-KVDA------------ASLKG--------LNNLAK----------LGLSFNSISA 230

Query: 728 LPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
           +   +             N  +L     + L+ N+L  ++P  + +   ++ + L 
Sbjct: 231 VDNGS-----------LANTPHLRE---LHLNNNKLV-KVPGGLADHKYIQVVYLH 271

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 11/129 (8%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           ++ +       L  L LS N     +      S  ++  L+ L+LN N     V   L  
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL-VKVPGGLAD 261

Query: 125 LTSLTTLNLYYNRI-----GGLNPSQGLANLRNLKALNLSWNGISSGATRLGL-GNLTNL 178
              +  + L+ N I         P        +   ++L  N +     +      +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 179 EVLDLSANR 187
             + L   +
Sbjct: 322 AAVQLGNYK 330

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (266), Expect = 4e-24
 Identities = 105/518 (20%), Positives = 185/518 (35%), Gaps = 81/518 (15%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
                L+L  N I  L     ++ L  L+ L LS N I S              +LE LD
Sbjct: 52  PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLD 106

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           +S NR    L  +                           + +L  LDL  N+ +  LP 
Sbjct: 107 VSHNR----LQNI-SCCP----------------------MASLRHLDLSFNDFD-VLPV 138

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL 302
           C                          NLT L +L LS   F+ +  L  + +     +L
Sbjct: 139 C----------------------KEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCIL 175

Query: 303 LLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD-FKFLDLSSNKLVGN-- 359
           L  VS +++      +      VL L      +    +    +    L LS+ KL     
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 360 --FPTWLMQNNTKLEVLRLS----NNSFSGILQLPK-VKHDLLRHLDISNNNLTGML--- 409
               T+L +      +L ++      ++   ++L +      + +L+I N  +T  +   
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 410 -PQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCAS 468
                   ++ LM   +    F  +         E+ +  LS +  +  +        +S
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSS 354

Query: 469 LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNSHGLVVLDIS-NN 525
             +L+ ++N F   +F     L +L+ L L+ N      K+     N   L  LD+S N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNL 585
           L S            + VL +S N L G++   +    ++++LDL  NR+        +L
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL 472

Query: 586 SSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKF 622
            ++  L + +N L   +P  +F   T L  + L DN +
Sbjct: 473 QALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 81/455 (17%), Positives = 168/455 (36%), Gaps = 28/455 (6%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           L         EL++L LS N       + D+     ++ L+ L++++N      +     
Sbjct: 67  LRMPDISFLSELRVLRLSHNRI----RSLDFHVFLFNQDLEYLDVSHNRL--QNISCCP- 119

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           + SL  L+L +N    L   +   NL  L  L LS                 +  +LDL 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 185 ANRISGSLTELAPFRNLKVL--GMRNNLLNGSVESKGICELKNL--TELDLGENNLEGQL 240
           +  I G  TE     N  VL      N L     +  +  L +L  + + L + N +  +
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANL-----TSLEYLALSDNNFQGEFPLSLLTN 295
            +      G  +L+++  H+       +          +EYL + +            T 
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 296 HSNL--EVLLLKVSSNLRLKTENWIPTF--QLKVLQLPNCNLKVIPS-FLLHQYDFKFLD 350
                  +++  V + + L ++  + +   ++ +  L   +   I          F FL+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGM 408
            + N    +          +L+ L L  N      ++  +  ++  L  LD+S N+L   
Sbjct: 360 FTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCAS 468
                    + ++ +++S N   G++   +    ++ +LDL  N+    +    V    +
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPK-DVTHLQA 474

Query: 469 LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHF 503
           L+ L+V+ N         +  LT L++++L +N +
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 90/445 (20%), Positives = 168/445 (37%), Gaps = 28/445 (6%)

Query: 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309
            K L +S N +S      I+ L+ L  L LS N  +      +   + +LE L +  S N
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV--SHN 110

Query: 310 LRLKTENWIPTFQLKVLQLPNCNLKVIP--SFLLHQYDFKFLDLSSNKLVGNFPTWLMQN 367
            RL+  +  P   L+ L L   +  V+P      +     FL LS+ K        +   
Sbjct: 111 -RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 368 NTKLEVLRLSNNSFS-GILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ--KLMYID 424
           +    +L L +     G  +  ++ +  + HL    N+L  +        +   +L  I 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFS----GDLSATSVIRCASLEYLDVSENNFY 480
           ++  N +  + +     +   LL+++           +          +EYL++      
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 481 GHIFPTYMN-----LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS-NNLLSGHIPCW 534
             I           L  L   ++KN  F    +A       + +  +S ++    H+ C 
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC- 348

Query: 535 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL---FGSIASSLNLSSIMHL 591
             + S    L  ++N    ++    +  ++LQ L L  N L   F     + N+SS+  L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 592 YLQNNALSGQIPSTLFRSTELLT-LDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI 650
            +  N+L+           E +  L+L  N   G +   +     ++VL L  N +   I
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SI 465

Query: 651 PIALCQLQKLGILDLSHNKLNGSIP 675
           P  +  LQ L  L+++ N+L  S+P
Sbjct: 466 PKDVTHLQALQELNVASNQLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.6 bits (191), Expect = 6e-15
 Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 32/231 (13%)

Query: 56  YNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFN 115
           +  +  F     +L+  F E+ I  LS +               S      LN   N F 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISD----TPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 116 DSVLPYLNTLTSLTTLNLYYNRIGGL-NPSQGLANLRNLKALNLSWNGISSGATRLGLGN 174
           DSV    +TL  L TL L  N +      +    N+ +L+ L++S N ++S A       
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 175 LTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN 234
             ++ VL+LS+N ++GS+                            C    +  LDL  N
Sbjct: 427 AESILVLNLSSNMLTGSVFR--------------------------CLPPKVKVLDLHNN 460

Query: 235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
            +   +P  ++ L  L+ L+++ N L      V   LTSL+Y+ L DN + 
Sbjct: 461 RIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 61/388 (15%), Positives = 119/388 (30%), Gaps = 53/388 (13%)

Query: 58  SSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS 117
             D  P+ +  L     +L    + G   +             +  L ++    + F+  
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN-------TTVLHLVFHPNSLFSVQ 212

Query: 118 VLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLR--------NLKALNLSWNGISSGATR 169
           V   +N L  L   N+  N          L+ L          L+ +  +W         
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 170 LGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNG--SVESKGICELKNLT 227
                +  L + +L+                LK L + +         +         + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGE 287
              L  ++       C         L+ + N  + ++    + L  L+ L L  N  +  
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 288 FPLS-LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDF 346
           F ++ +  N S+LE L + ++S                +              +      
Sbjct: 393 FKVALMTKNMSSLETLDVSLNS----------------LNSHAYDRTCAWAESI------ 430

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS----GILQLPKVKHDLLRHLDISN 402
             L+LSSN L G+    L      ++VL L NN        +  L       L+ L++++
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIMSIPKDVTHLQA-----LQELNVAS 482

Query: 403 NNLTGMLPQNMGIVIQKLMYIDISKNNF 430
           N L   +P  +   +  L YI +  N +
Sbjct: 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 75/447 (16%), Positives = 142/447 (31%), Gaps = 49/447 (10%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
            + + L LS NS S +         L  LR L +S+N +   L  ++ +  Q L Y+D+S
Sbjct: 52  PRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS 108

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT 486
            N  + NI      M  L  LDLS N F              L +L +S   F       
Sbjct: 109 HNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 487 YMNLTQLRWLYLKNNHFTGK-IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 545
             +L  L  + L    +  K  +   L      VL +  +  S        + + L  L 
Sbjct: 166 VAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRL-----------FGSIASSLNLSSIMHLYLQ 594
           +S   L      ++  F        +   +              +        + +L + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 595 NNALSGQIPSTLFRSTE-----LLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQ 649
           N  ++ +I    F  +E     L+   +++  F        +  +E+ + +L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 650 IPIALCQLQKLGILDLSHNKLNGSIPSCFVNM----LFWREGNG--DLYGSGLYIYFQLG 703
             +          L+ + N    S+      +        + NG  + +           
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA----LMTK 400

Query: 704 GLHSIGTYYNSTLDL-WLFGDDYITLPQRARVQFVTKNRYEFYNG------SNLNYMSGI 756
            + S+ T   S   L     D      +   V  ++ N               +  +   
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM--LTGSVFRCLPPKVKVL--- 455

Query: 757 DLSYNELTGEIPSEIGELPKVRALNLS 783
           DL  N +   IP ++  L  ++ LN++
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVA 481

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 4e-24
 Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 42/263 (15%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
           ++   LNL  N I  +       +L +L+ L L  N I     GA       L +L  L+
Sbjct: 75  SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNTLE 129

Query: 183 LSANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           L  N ++  +          L+ L +RNN +  S+ S     + +L  LDLGE      +
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 241 PW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL 299
                  L  LK L++   ++  ++P+ +  L  LE L +S N+F  E         S+L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSL 244

Query: 300 EVLLLKVSSNLRLKTENWIPTFQLKVLQ-LPNCNLKVIPSFLLHQYDFKFLDLSSNKLVG 358
           + L +           + +   +      L +                  L+L+ N L  
Sbjct: 245 KKLWV---------MNSQVSLIERNAFDGLAS---------------LVELNLAHNNLS- 279

Query: 359 NFPTWLMQNNTKLEVLRLSNNSF 381
           + P  L      L  L L +N +
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 59/239 (24%), Positives = 90/239 (37%), Gaps = 22/239 (9%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY--LNTLTSLTT 130
               + L+L  N      +    D+      L++L L  N+     +     N L SL T
Sbjct: 74  PSNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNT 127

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS-ANRIS 189
           L L+ N +  + PS     L  L+ L L  N I S  +      + +L  LDL    ++ 
Sbjct: 128 LELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGELKKLE 185

Query: 190 ----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
               G+   L    NLK L +    +   + +  +  L  L EL++  N+     P    
Sbjct: 186 YISEGAFEGL---FNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L  LK L +  + +S    +    L SL  L L+ NN     P  L T    L  L L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 17/230 (7%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTG 505
           L+L  N     + A +      LE L +  N+    I    +  L  L  L L +N  T 
Sbjct: 80  LNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 506 KIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL----LMSKNHLEGNIPVQI- 559
            I +G       L  L + NN +   IP     F+ +  L    L     LE  I     
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIP--SYAFNRVPSLMRLDLGELKKLE-YISEGAF 192

Query: 560 NNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLR 618
                L+ L+L    +   + +   L  +  L +  N    +I    F   + L  L + 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVM 250

Query: 619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
           +++      +  +  + L  L L  N L          L+ L  L L HN
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 14/211 (6%)

Query: 467 ASLEYLDVSENNF---YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDI 522
           ++  YL++ ENN        F    +L  L  L L  N    +I+ G  N    L  L++
Sbjct: 75  SNTRYLNLMENNIQMIQADTFR---HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130

Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIAS 581
            +N L+          S L  L +  N +E +IP    N    L  LDL E +    I+ 
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 582 SL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVL 639
                L ++ +L L    +   +P  L     L  L++  N F    P   +  S L+ L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 640 LLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
            +  + +      A   L  L  L+L+HN L
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 63/305 (20%), Positives = 105/305 (34%), Gaps = 65/305 (21%)

Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
           Q   +      L  +P  +    + ++L+L  N +         ++   LEVL+L  NS 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 382 SGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIG 439
             I       + L  L  L++ +N LT                  I    FE        
Sbjct: 112 RQIE--VGAFNGLASLNTLELFDNWLT-----------------VIPSGAFEY------- 145

Query: 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYL 498
            + +L  L L  N     + + +  R  SL  LD+ E     +I    +  L  L++L L
Sbjct: 146 -LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 558
              +                            +P  +     L+ L MS NH     P  
Sbjct: 204 GMCNIK-------------------------DMP-NLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 559 INNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTL 615
            +    L+ L +  +++   I  +    L+S++ L L +N LS  +P  LF     L+ L
Sbjct: 238 FHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295

Query: 616 DLRDN 620
            L  N
Sbjct: 296 HLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 52/235 (22%), Positives = 83/235 (35%), Gaps = 37/235 (15%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           N   L+L ENN++         L  L+VL +  N +          L SL  L L DN  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSN------------------LRLKTENWIPTFQ---- 322
               P       S L  L L   +N                  L L     +        
Sbjct: 136 T-VIPSGAFEYLSKLRELWL--RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 323 -----LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS 377
                LK L L  CN+K +P+        + L++S N              + L+ L + 
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVM 250

Query: 378 NNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
           N+  S I         L  L  L++++NNL+  LP ++   ++ L+ + +  N +
Sbjct: 251 NSQVSLI--ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 55/263 (20%), Positives = 98/263 (37%), Gaps = 31/263 (11%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
              +  +   L+  +PQ +    + L   ++ +NN +     +   +  L +L L RN  
Sbjct: 56  FSKVVCTRRGLSE-VPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 455 SGDLSATSVIRCASLEYLDVSENN--------FYGHIFPTYMNLTQLRWLYLKNNHFTGK 506
              +   +    ASL  L++ +N         F          L++LR L+L+NN     
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY--------LSKLRELWLRNNPIE-S 161

Query: 507 IKAGLLNS-HGLVVLDISNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQINNFRQ 564
           I +   N    L+ LD+       +I          L  L +   +++ ++P  +     
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVG 219

Query: 565 LQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNK 621
           L+ L++S N     I       LSS+  L++ N+ +S  I    F     L+ L+L  N 
Sbjct: 220 LEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 622 FFGRIPDQINNHSELRVLLLRGN 644
                 D       L  L L  N
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 13/195 (6%)

Query: 492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
           Q   +       + ++  G+        L++  N +         +  +L+VL + +N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 552 EGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFR 608
              I V   N    L  L+L +N L   I S     LS +  L+L+NN +   IPS  F 
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 609 S-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666
               L+ LDL + K    I +        L+ L L    ++  +P  L  L  L  L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMS 226

Query: 667 HNKLNGSIPSCFVNM 681
            N      P  F  +
Sbjct: 227 GNHFPEIRPGSFHGL 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (255), Expect = 1e-23
 Identities = 58/289 (20%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 98  SGSSKKLKILNLNYNNFNDSVLPY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKA 155
           SG ++ +K L+L+ N    + +    L    +L  L L  N I  +      ++L +L+ 
Sbjct: 48  SGLTEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEH 104

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNG-- 213
           L+LS+N +S+ ++      L++L  L+L  N    +L E + F +L  L +         
Sbjct: 105 LDLSYNYLSNLSSSW-FKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTF 162

Query: 214 -SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT 272
             ++ K    L  L EL++  ++L+   P  L  +  +  L +        L   +   +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 273 SLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCN 332
           S+E L L D +        L T  +N  +                      + +++ + +
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKF-----------------TFRNVKITDES 265

Query: 333 LKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
           L  +   L        L+ S N+L  + P  +    T L+ + L  N +
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 50/263 (19%)

Query: 68  SLFLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVL 119
           S       LQ L L+ N         F                 L+ L+L+YN    S L
Sbjct: 70  SDLQRCVNLQALVLTSNGINTIEEDSFSSL------------GSLEHLDLSYNYL--SNL 115

Query: 120 PY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNG----ISSGATRLGLG 173
                  L+SLT LNL  N    L  +   ++L  L+ L +        I          
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----FA 171

Query: 174 NLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229
            LT LE L++ A+ +      SL  +   +N+  L +        +    +    ++  L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSI---QNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 230 DLGENNLEG----QLP----WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
           +L + +L+     +L       L      + + I+   L   +  ++  ++ L  L  S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 282 NNFQGEFPLSLLTNHSNLEVLLL 304
           N  +   P  +    ++L+ + L
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 46/281 (16%), Positives = 101/281 (35%), Gaps = 27/281 (9%)

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNN 404
           K LDLS+N++        +Q    L+ L L++N  + I         L  L HLD+S N 
Sbjct: 55  KSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNY 111

Query: 405 LTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI-GEMKELFLLDLSRNKFSGDLSATSV 463
           L+  L  +    +  L ++++  N ++     S+   + +L +L +        +     
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 464 IRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDI 522
                LE L++  ++   +   +  ++  +  L L        +    +  +  +  L++
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
            +  L                     + L       +      + + +++  LF  +   
Sbjct: 230 RDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKF 622
             +S ++ L    N L   +P  +F   T L  + L  N +
Sbjct: 274 NQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 64/350 (18%), Positives = 117/350 (33%), Gaps = 67/350 (19%)

Query: 170 LGLGNLTNLEVLDLSANRI----SGSLTEL--APFRNLKVLGMRNNLLNGSVESKGICEL 223
           L     +N   L    N I    SGSL  +       +K L + NN +   + +  +   
Sbjct: 17  LSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRC 75

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            NL  L L  N +        S L  L+ LD+S+N+LS    S    L+SL +L L  N 
Sbjct: 76  VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIP--TF----QLKVLQLPNCNLKVIP 337
           ++     SL ++ + L++L +   +         I    F     L+ L++   +L+   
Sbjct: 136 YKTLGETSLFSHLTKLQILRV--GNMDTFTK---IQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 338 SFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG--ILQLPKVKHDL 394
              L    +   L L   + +       +   + +E L L +         +L   + + 
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
           L                           + I+  +    +   + ++  L  L+ SRN+ 
Sbjct: 250 LIKK-------------------FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
                              V +  F          LT L+ ++L  N + 
Sbjct: 290 KS-----------------VPDGIFD--------RLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 55/316 (17%), Positives = 109/316 (34%), Gaps = 21/316 (6%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
               +  + + S         +  D       S+ +L   +P  +   ++ L   D+S N
Sbjct: 7   MVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNS-IPSGLTEAVKSL---DLSNN 62

Query: 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TY 487
                    +     L  L L+ N  +  +   S     SLE+LD+S N    ++    +
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWF 120

Query: 488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHG-LVVLDISNNLLSGHIPC-WIGNFSYLDVLL 545
             L+ L +L L  N +    +  L +    L +L + N      I        ++L+ L 
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSG--- 600
           +  + L+   P  + + + +  L L   +    +        SS+  L L++  L     
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 601 -QIPSTLFRS----TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC 655
            ++ +    S         + + D   F ++   +N  S L  L    N L+        
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFD 298

Query: 656 QLQKLGILDLSHNKLN 671
           +L  L  + L  N  +
Sbjct: 299 RLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENR 574
            +  LD+SNN ++      +     L  L+++ N +   I     ++   L+ LDLS N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 575 LFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI- 630
           L  +++SS    LSS+  L L  N       ++LF   T+L  L + +   F +I  +  
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
              + L  L +  + LQ   P +L  +Q +  L L   +    +  
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 1e-23
 Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 42/263 (15%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
           T+   LNL+ N+I  +  +    +LR+L+ L LS N I +   GA       L NL  L+
Sbjct: 64  TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTLE 118

Query: 183 LSANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           L  NR++ ++          LK L +RNN +  S+ S     + +L  LDLGE      +
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 241 PW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL 299
                  L  L+ L+++  +L   +P+ +  L  L+ L LS N+              +L
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHL 233

Query: 300 EVLLLKVSSNLRLKTENWIPTFQLKVLQ-LPNCNLKVIPSFLLHQYDFKFLDLSSNKLVG 358
           + L +          ++ I   +      L +                  ++L+ N L  
Sbjct: 234 QKLWM---------IQSQIQVIERNAFDNLQS---------------LVEINLAHNNLT- 268

Query: 359 NFPTWLMQNNTKLEVLRLSNNSF 381
             P  L      LE + L +N +
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 8e-23
 Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 22/239 (9%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY--LNTLTSLTT 130
               ++L+L  N      +    +S    + L+IL L+ N+     +     N L +L T
Sbjct: 63  STNTRLLNLHENQI----QIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNT 116

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS-ANRIS 189
           L L+ NR+  + P+     L  LK L L  N I S  +      + +L  LDL    R+S
Sbjct: 117 LELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLS 174

Query: 190 ----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
               G+   L    NL+ L +    L   + +  +  L  L ELDL  N+L    P    
Sbjct: 175 YISEGAFEGL---SNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L+ L+ L +  + +     +   NL SL  + L+ NN     P  L T   +LE + L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 54/230 (23%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTG 505
           L+L  N+    +   S      LE L +S N+    I    +  L  L  L L +N  T 
Sbjct: 69  LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 506 KIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL----LMSKNHLEGNIPVQI- 559
            I  G       L  L + NN +   IP     F+ +  L    L     L   I     
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 560 NNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLR 618
                L+ L+L+   L   I +   L  +  L L  N LS  I    F+    L  L + 
Sbjct: 182 EGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239

Query: 619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
            ++      +  +N   L  + L  N L          L  L  + L HN
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 60/282 (21%), Positives = 105/282 (37%), Gaps = 39/282 (13%)

Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
           Q   +     NL+ +P  +    + + L+L  N++         ++   LE+L+LS N  
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100

Query: 382 SGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIG 439
             I       + L  L  L++ +N LT                  I    F         
Sbjct: 101 RTIE--IGAFNGLANLNTLELFDNRLT-----------------TIPNGAFVY------- 134

Query: 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYL 498
            + +L  L L  N     + + +  R  SL  LD+ E     +I    +  L+ LR+L L
Sbjct: 135 -LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 558
              +   +I   L     L  LD+S N LS   P       +L  L M ++ ++      
Sbjct: 193 AMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 559 INNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNAL 598
            +N + L  ++L+ N L   +   L   L  +  ++L +N  
Sbjct: 251 FDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 10/209 (4%)

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 525
            +   L++ EN        ++ +L  L  L L  NH    I+ G  N    L  L++ +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL- 583
            L+          S L  L +  N +E +IP    N    L+ LDL E +    I+    
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 584 -NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI-NNHSELRVLLL 641
             LS++ +L L    L  +IP  L    +L  LDL  N     I          L+ L +
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWM 238

Query: 642 RGNYLQGQIPIALCQLQKLGILDLSHNKL 670
             + +Q     A   LQ L  ++L+HN L
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 54/235 (22%), Positives = 83/235 (35%), Gaps = 37/235 (15%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           N   L+L EN ++         L  L++L +S NH+          L +L  L L DN  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSN------------------LRLKTENWIPTFQ---- 322
               P       S L+ L L   +N                  L L     +        
Sbjct: 125 T-TIPNGAFVYLSKLKELWL--RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 323 -----LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS 377
                L+ L L  CNL+ IP+          LDLS N L         Q    L+ L + 
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239

Query: 378 NNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
            +    I        +L  L  +++++NNLT +LP ++   +  L  I +  N +
Sbjct: 240 QSQIQVI--ERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 57/259 (22%), Positives = 100/259 (38%), Gaps = 23/259 (8%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
              +     NL   +P  +    + L   ++ +N  +     S   ++ L +L LSRN  
Sbjct: 45  FSKVICVRKNLRE-VPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
              +   +    A+L  L++ +N     I    ++ L++L+ L+L+NN     I +   N
Sbjct: 101 R-TIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 514 S-HGLVVLDIS-NNLLSGHIPCWIGNFSYLD---VLLMSKNHLEGNIPVQINNFRQLQLL 568
               L  LD+     LS +I    G F  L     L ++  +L   IP  +    +L  L
Sbjct: 158 RIPSLRRLDLGELKRLS-YIS--EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL 212

Query: 569 DLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGR 625
           DLS N L  +I       L  +  L++  + +   I    F +   L+ ++L  N     
Sbjct: 213 DLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 626 IPDQINNHSELRVLLLRGN 644
             D       L  + L  N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 13/195 (6%)

Query: 492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
           Q   +     +   ++  G+  S    +L++  N +         +  +L++L +S+NH+
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 552 EGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFR 608
              I +   N    L  L+L +NRL  +I +     LS +  L+L+NN +   IPS  F 
Sbjct: 101 R-TIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 609 S-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666
               L  LDL + K    I +      S LR L L    L+ +IP  L  L KL  LDLS
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215

Query: 667 HNKLNGSIPSCFVNM 681
            N L+   P  F  +
Sbjct: 216 GNHLSAIRPGSFQGL 230

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 12/168 (7%)

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573
           S+    +      L   +P  I   +   +L + +N ++        + R L++L LS N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 574 RLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI 630
            +  +I       L+++  L L +N L+  IP+  F   ++L  L LR+N     IP   
Sbjct: 99  HI-RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP-IESIPSYA 155

Query: 631 -NNHSELRVL-LLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
            N    LR L L     L      A   L  L  L+L+   L   IP+
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (253), Expect = 2e-23
 Identities = 69/291 (23%), Positives = 104/291 (35%), Gaps = 27/291 (9%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
              T L+L  N I  L        L++L AL L  N IS    +     L  L+ L +S 
Sbjct: 54  PDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISK 111

Query: 186 NRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL--P 241
           N     L E+ P    +L  L + +N +   V       L+N+  +++G N LE     P
Sbjct: 112 NH----LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
                L  L  L IS   L+  +P  +    +L  L L  N  Q    L  L  +S L  
Sbjct: 167 GAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYR 221

Query: 302 LLLKVSSNL--RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL--- 356
           L L    N    ++  +      L+ L L N  L  +P+ L      + + L +N +   
Sbjct: 222 LGL--GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 357 -VGNF-PTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNN 403
            V +F P            + L NN        P     +     +   N 
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 65/312 (20%), Positives = 112/312 (35%), Gaps = 26/312 (8%)

Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
            L+V+Q  +  LK +P  +    D   LDL +N +         +    L  L L NN  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 382 SGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIG 439
           S I    K    L  L+ L IS N+L   +P N+      L+ + I  N           
Sbjct: 91  SKIH--EKAFSPLRKLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFS 144

Query: 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLK 499
            ++ +  +++  N                L YL +SE        P  +    L  L+L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--TGIPKDL-PETLNELHLD 201

Query: 500 NNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 558
           +N     I+   L     L  L + +N +       +     L  L +  N L   +P  
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

Query: 559 INNFRQLQLLDLSENRL-------FGSIASSLNLSSIMHLYLQNNALS-GQIPSTLFRS- 609
           + + + LQ++ L  N +       F  +   +  +    + L NN +   ++    FR  
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 610 TELLTLDLRDNK 621
           T+ L +   + K
Sbjct: 320 TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 17/240 (7%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
           F   Q L  L L  N            +    +KL+ L ++ N+     +P  N  +SL 
Sbjct: 74  FKGLQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHL--VEIP-PNLPSSLV 126

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            L ++ NRI  +      + LRN+  + +  N + +     G  +   L  L +S  +++
Sbjct: 127 ELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 190 GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIG 249
           G   +L     L  L + +N +  ++E + +     L  L LG N +       LS L  
Sbjct: 186 GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ----GEF-PLSLLTNHSNLEVLLL 304
           L+ L +  N LS  +P+ + +L  L+ + L  NN       +F P+      +    + L
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 16/230 (6%)

Query: 446 LLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFT 504
           LLDL  N  S +L          L  L +  N     I    +  L +L+ LY+  NH  
Sbjct: 58  LLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 564
            +I   L +S  LV L I +N +             ++ + M  N LE N   +   F  
Sbjct: 116 -EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDG 171

Query: 565 LQL--LDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNK 621
           L+L  L +SE +L   I   L   ++  L+L +N +   I        ++L  L L  N+
Sbjct: 172 LKLNYLRISEAKL-TGIPKDL-PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 622 FFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
               I +   +    LR L L  N L  ++P  L  L+ L ++ L  N +
Sbjct: 229 I-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 59/376 (15%), Positives = 119/376 (31%), Gaps = 83/376 (22%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           +L  +   +  L+  +P  +S      +LD+  N +S         L  L  L L +N  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY 344
                       S +        S LR          +L+ L +   +L  IP  L    
Sbjct: 91  ------------SKIHEKAF---SPLR----------KLQKLYISKNHLVEIPPNLPS-- 123

Query: 345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL-LRHLDISNN 403
               L +  N++    P  +      +  + +  N        P     L L +L IS  
Sbjct: 124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 404 NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV 463
            LT  +P+++    + L  + +  N  +      +    +L+ L L  N+          
Sbjct: 183 KLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-------- 230

Query: 464 IRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523
                     +   +           L  LR L+L NN  + ++ AGL +   L V+ + 
Sbjct: 231 ---------MIENGSLS--------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL-FGSIASS 582
            N ++  +   + +F  +   +                      + L  N + +  +  +
Sbjct: 273 TNNIT-KVG--VNDFCPVGFGV---------------KRAYYNGISLFNNPVPYWEVQPA 314

Query: 583 L--NLSSIMHLYLQNN 596
               ++  + +   N 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 17/199 (8%)

Query: 68  SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTS 127
            +F   + +  +++ GN       +     +    KL  L ++      + +P  +   +
Sbjct: 141 GVFSGLRNMNCIEMGGNPL---ENSGFEPGAFDGLKLNYLRISEAKL--TGIP-KDLPET 194

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANR 187
           L  L+L +N+I  +   + L     L  L L  N I        L  L  L  L L  N+
Sbjct: 195 LNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGS-LSFLPTLRELHLDNNK 252

Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELK------NLTELDLGENNLEGQL- 240
           +S     L   + L+V+ +  N +   V     C +           + L  N +     
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 241 -PWCLSDLIGLKVLDISFN 258
            P     +     +     
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 45/275 (16%)

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
           L V+  S+  L   +P  I       +L +  N +           + L  L L  N++ 
Sbjct: 35  LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI- 90

Query: 577 GSIASS--LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI-NNH 633
             I       L  +  LY+  N L  +IP  L  S  L+ L + DN+   ++P  + +  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIR-KVPKGVFSGL 146

Query: 634 SELRVLLLRGNYLQ-GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLY 692
             +  + + GN L+            KL  L +S  KL G        +           
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN---------- 196

Query: 693 GSGLYIYFQLGGLHSIGTYYNSTLD----LWLFGDDYITLPQRARVQFVTKNRYEFYNGS 748
                ++     + +I             L L  +    +   +                
Sbjct: 197 ----ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-----------LSFLP 241

Query: 749 NLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
            L     + L  N+L+  +P+ + +L  ++ + L 
Sbjct: 242 TLRE---LHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 27/132 (20%)

Query: 70  FLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY 121
            L + +L  L L  N                           L+ L+L+ N     V   
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFL------------PTLRELHLDNNKL-SRVPAG 259

Query: 122 LNTLTSLTTLNLYYNRI-----GGLNPSQGLANLRNLKALNLSWNGISSGATRLGL-GNL 175
           L  L  L  + L+ N I         P            ++L  N +     +      +
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 176 TNLEVLDLSANR 187
           T+   +     +
Sbjct: 320 TDRLAIQFGNYK 331

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (253), Expect = 9e-23
 Identities = 69/409 (16%), Positives = 144/409 (35%), Gaps = 42/409 (10%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
             +  ++L  N I  LN +   + L++L+ L +                L++L +L L  
Sbjct: 30  AHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 186 NRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGI-CELKNLTELDLGENNLEGQLPW 242
           N+    L         NL+VL +    L+G+V S      L +L  L L +NN++   P 
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 243 CLSD-LIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
                +    VLD++FN +       + N     +  L  ++         L + +   +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-------LQDMNEYWL 200

Query: 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP 361
              K  +  +  +        +  L L     K   +               + + G   
Sbjct: 201 GWEKCGNPFKNTS--------ITTLDLSGNGFKESMAKRFF-----------DAIAGTKI 241

Query: 362 TWLMQNNTKLEVLRLSNNSFSGI--LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQK 419
             L+ +N+        + +F          ++   ++  D+S + +   L +++      
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTD 300

Query: 420 LMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF 479
           L  + +++N        +   +  L  L+LS+N     + +        LE LD+S N+ 
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI 359

Query: 480 YGHIFP--TYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 525
                   +++ L  L+ L L  N     +  G+ +    L  + +  N
Sbjct: 360 --RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (251), Expect = 1e-22
 Identities = 81/419 (19%), Positives = 149/419 (35%), Gaps = 62/419 (14%)

Query: 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGI 163
           +  ++L+ N+  +      + L  L  L +     G +  +     L +L  L L +N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 164 SSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFR---NLKVLGMRNNLLNGSVESKGI 220
               T      L NLEVL L+   + G++     F+   +L++L +R+N +   ++    
Sbjct: 92  LQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASF 149

Query: 221 -CELKNLTELDLGENNLE----------GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA 269
              ++    LDL  N ++              + L  L  + + D++   L         
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 270 NLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLP 329
             TS+  L LS N F+           +  ++  L +S++  + +      F+       
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK----DPD 265

Query: 330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI----- 384
           N   K + +  +        DLS +K+       +  + T LE L L+ N  + I     
Sbjct: 266 NFTFKGLEASGVKT-----CDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319

Query: 385 LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKEL 444
             L       L  L++S N L                   I    FE         + +L
Sbjct: 320 WGLTH-----LLKLNLSQNFLG-----------------SIDSRMFEN--------LDKL 349

Query: 445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHF 503
            +LDLS N     L   S +   +L+ L +  N         +  LT L+ ++L  N +
Sbjct: 350 EVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 7e-21
 Identities = 85/429 (19%), Positives = 145/429 (33%), Gaps = 63/429 (14%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPS-VIANLTSLEYLALSDNN 283
           ++  +DL  N++        S L  L+ L +        + +     L+SL  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ 343
           F  +         +NLEVL L  +               L    L         +F    
Sbjct: 91  FL-QLETGAFNGLANLEVLTL--TQC------------NLDGAVLS-------GNFFKPL 128

Query: 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI--LQLPKVKHDLLRHLDIS 401
              + L L  N +    P     N  +  VL L+ N    I    L   +      L +S
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
           +  L                  D+++         +  +   +  LDLS N F   ++  
Sbjct: 189 SITLQ-----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLD 521
                A  +   +  +N Y        +     +    N  F G      L + G+   D
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMG----SSFGHTNFKDPDNFTFKG------LEASGVKTCD 281

Query: 522 ISNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSI 579
           +S + +   +   +  +F+ L+ L +++N +   I          L  L+LS+N L GSI
Sbjct: 282 LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSI 338

Query: 580 ASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI-NNHSE 635
            S +  NL  +  L L  N +   +    F     L  L L  N+    +PD I +  + 
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTS 396

Query: 636 LRVLLLRGN 644
           L+ + L  N
Sbjct: 397 LQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 49/316 (15%)

Query: 103 KLKILNLNYNNFNDSVLP--YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160
            L++L L   N + +VL   +   LTSL  L L  N I  + P+    N+R    L+L++
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 161 NGISS---------GATRLGLGNLTNLEVLDLSANRISGSLTELAPFR--NLKVLGMRNN 209
           N + S               L  L+++ + D++   +        PF+  ++  L +  N
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG-WEKCGNPFKNTSITTLDLSGN 222

Query: 210 LLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLI---------------GLKVLD 254
                  +K   +    T++     +    +                       G+K  D
Sbjct: 223 GFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 255 ISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKT 314
           +S + +   L SV ++ T LE L L+ N    +   +     ++L  L L  S N  L +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNL--SQN-FLGS 337

Query: 315 ENWIPTF------QLKVLQLPNCNLKVIPSFL---LHQYDFKFLDLSSNKLVGNFPTWLM 365
              I +       +L+VL L   +++ +       L     K L L +N+L  + P  + 
Sbjct: 338 ---IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN--LKELALDTNQLK-SVPDGIF 391

Query: 366 QNNTKLEVLRLSNNSF 381
              T L+ + L  N +
Sbjct: 392 DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 74/386 (19%), Positives = 143/386 (37%), Gaps = 34/386 (8%)

Query: 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDF-KFLDLSSNKLVGNFPTWLMQ 366
            N  L     +P   +  + L   ++  +      +    +FL +              +
Sbjct: 18  INRGLHQVPELPA-HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 367 NNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTG-MLPQNMGIVIQKLMYI 423
             + L +L+L  N F  +       + L  L  L ++  NL G +L  N    +  L  +
Sbjct: 77  GLSSLIILKLDYNQFLQLE--TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134

Query: 424 DISKNNFEGNIPYSI-GEMKELFLLDLSRNKFSGD---------LSATSVIRCASLEYLD 473
            +  NN +   P S    M+   +LDL+ NK                 +++R +S+   D
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

Query: 474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC 533
           ++E              T +  L L  N F   +     ++     +    +L+  +   
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ---SLILSNSYN 251

Query: 534 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHL 591
              +F + +         +G           ++  DLS++++F ++  S+  + + +  L
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEA------SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 592 YLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQ 649
            L  N ++ +I    F   T LL L+L  N   G I  ++  N  +L VL L  N+++  
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRAL 362

Query: 650 IPIALCQLQKLGILDLSHNKLNGSIP 675
              +   L  L  L L  N+L  S+P
Sbjct: 363 GDQSFLGLPNLKELALDTNQLK-SVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 65/316 (20%), Positives = 117/316 (37%), Gaps = 41/316 (12%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI-GEMKELFLLDLSRNK 453
           + ++D+S N++   L +     +Q L ++ + +      I  +    +  L +L L  N+
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 454 FSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAGL 511
           F   L   +    A+LE L +++ N  G +        LT L  L L++N+      A  
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 512 LNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR------- 563
             +     VLD++ N +   I     +         +   L       +N +        
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICE--EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 564 ------QLQLLDLSENRL----FGSIASSLNLSSIMHLYLQNNALSGQ---------IPS 604
                  +  LDLS N            ++  + I  L L N+   G            +
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 605 TLFR---STELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKL 660
             F+   ++ + T DL  +K F  +   + ++ ++L  L L  N +      A   L  L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 661 GILDLSHNKLNGSIPS 676
             L+LS N L GSI S
Sbjct: 326 LKLNLSQNFL-GSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 24/262 (9%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKK------LKILNLNYNNFNDS 117
           I   S FL  +   +LDL+ N      E    +  G          + + ++N       
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 118 VLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNL-- 175
                   TS+TTL+L  N        +    +   K  +L  +   +  +  G  N   
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 176 -----------TNLEVLDLSANRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICE 222
                      + ++  DLS ++I  +L +     F +L+ L +  N +N  ++      
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG 321

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
           L +L +L+L +N L         +L  L+VLD+S+NH+          L +L+ LAL  N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

Query: 283 NFQGEFPLSLLTNHSNLEVLLL 304
             +   P  +    ++L+ + L
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWL 402

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 50/253 (19%), Positives = 85/253 (33%), Gaps = 39/253 (15%)

Query: 45  LSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKL 104
             L  + +     +                 +  LDLSGN F      + +  + +  K+
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKI 241

Query: 105 KILNLNYNNFNDSVLPYLN------------TLTSLTTLNLYYNRIGGLNPSQGLANLRN 152
           + L L+ +    S   + N              + + T +L  ++I  L      ++  +
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-LKSVFSHFTD 300

Query: 153 LKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLN 212
           L+ L L+ N I+          LT+L  L+LS N +  S+     F NL           
Sbjct: 301 LEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLG-SIDSRM-FENLD---------- 347

Query: 213 GSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT 272
                        L  LDL  N++          L  LK L +  N L      +   LT
Sbjct: 348 ------------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395

Query: 273 SLEYLALSDNNFQ 285
           SL+ + L  N + 
Sbjct: 396 SLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 54/321 (16%), Positives = 103/321 (32%), Gaps = 47/321 (14%)

Query: 491 TQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSY---LDVLLM 546
             + ++ L  N    ++          L  L +        I      F     L +L +
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILKL 86

Query: 547 SKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASS---LNLSSIMHLYLQNNALSGQI 602
             N     +     N    L++L L++  L G++ S      L+S+  L L++N +    
Sbjct: 87  DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 603 PSTLFRS-TELLTLDLRDNKF----------FGRIPDQINNHSELRVLLLRGNYLQGQIP 651
           P++ F +      LDL  NK           F      +   S + +  +   +L  +  
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 652 IALCQLQKLGILDLSHNKLNGSIPSCFVNMLF-------WREGNGDLYGSGLYIYFQ-LG 703
               +   +  LDLS N    S+   F + +            + ++  S  +  F+   
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 704 GLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNEL 763
                G   +      L       L +             F + ++L     + L+ NE+
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSV-----------FSHFTDLEQ---LTLAQNEI 311

Query: 764 TGEIPSEI-GELPKVRALNLS 783
             +I       L  +  LNLS
Sbjct: 312 N-KIDDNAFWGLTHLLKLNLS 331

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 50/269 (18%), Positives = 84/269 (31%), Gaps = 47/269 (17%)

Query: 69  LFLPFQELQILDLSGN---------YFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVL 119
            F P   L++L L  N         +F               ++  +L+L +N       
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNM------------RRFHVLDLTFNKVKSICE 171

Query: 120 PYLNTLTS--LTTLNLYYNRIGGLNPSQG-------LANLRNLKALNLSWNGISSGATR- 169
             L        T L L    +  +N                ++  L+LS NG      + 
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 170 -LGLGNLTNLEVLDLSANRISGSLTELAPFR-------------NLKVLGMRNNLLNGSV 215
                  T ++ L LS +   GS      F+              +K   +  + +  ++
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-AL 290

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLE 275
                    +L +L L +N +          L  L  L++S N L      +  NL  LE
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 276 YLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L LS N+ +            NL+ L L
Sbjct: 351 VLDLSYNHIR-ALGDQSFLGLPNLKELAL 378

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 10/211 (4%)

Query: 98  SGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALN 157
            G     + + L+ N  +           +LT L L+ N +  +  +     L  L+ L+
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLD 86

Query: 158 LSWNGISSGATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNG 213
           LS N             L  L  L L    +     G    L     L+ L +++N L  
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQ- 142

Query: 214 SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273
           ++      +L NLT L L  N +          L  L  L +  N ++   P    +L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           L  L L  NN     P   L     L+ L L
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 19/220 (8%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY--LNTLTSLTT 130
               Q + L GN       +    S  + + L IL L+ N    + +       L  L  
Sbjct: 31  PAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQ 84

Query: 131 LNLYYN-RIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
           L+L  N ++  +        L  L  L+L   G+      L    L  L+ L L  N + 
Sbjct: 85  LDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQ 142

Query: 190 ----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
                +  +L    NL  L +  N ++ SV  +    L +L  L L +N +    P    
Sbjct: 143 ALPDDTFRDL---GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
           DL  L  L +  N+LS      +A L +L+YL L+DN + 
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
              + ++L  N  +    A       L +L + +N+L+          + L+ L +S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 551 LEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLF 607
              ++     +   +L  L L    L   +   L   L+++ +LYLQ+NAL   +P   F
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 608 RS-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665
           R    L  L L  N+    +P++       L  LLL  N +    P A   L +L  L L
Sbjct: 150 RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 666 SHNKL 670
             N L
Sbjct: 209 FANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 51/282 (18%), Positives = 80/282 (28%), Gaps = 78/282 (27%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
            +   + L+ NRI  + P+      RNL  L L  N ++          L  LE LDLS 
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89

Query: 186 NRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC 243
           N     L  + P  F  L                        L  L L    L+   P  
Sbjct: 90  NAQ---LRSVDPATFHGLG----------------------RLHTLHLDRCGLQELGPGL 124

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLL 303
              L  L+ L +  N L         +L +L +L L  N      P        +L+ L 
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL- 182

Query: 304 LKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTW 363
                                                          L  N++  +    
Sbjct: 183 ----------------------------------------------LLHQNRVA-HVHPH 195

Query: 364 LMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNL 405
             ++  +L  L L  N+ S +          L++L +++N  
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 17/236 (7%)

Query: 392 HDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSR 451
           ++           L   +P  +    Q++    +  N        S    + L +L L  
Sbjct: 10  NEPKVTTSCPQQGLQA-VPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 452 NKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAG 510
           N  +  + A +    A LE LD+S+N     + P T+  L +L  L+L       ++  G
Sbjct: 66  NVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 511 LLNS-HGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQL 567
           L      L  L + +N L   +P     +   L  L +  N +  ++P +       L  
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR 181

Query: 568 LDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDN 620
           L L +NR+   +      +L  +M LYL  N LS  +P+        L  L L DN
Sbjct: 182 LLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 8/208 (3%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
            + + +  N ++  +P       + L  + +  N        +   +  L  LDLS N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
              +   +      L  L +        + P  +  L  L++LYL++N     +      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 514 S-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE 572
               L  L +  N +S            LD LL+ +N +    P    +  +L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 573 NRLFGSIASSL--NLSSIMHLYLQNNAL 598
           N L  ++ +     L ++ +L L +N  
Sbjct: 211 NNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 8/171 (4%)

Query: 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENR 574
               + +  N +S            L +L +  N L   I          L+ LDLS+N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 575 LFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI- 630
              S+  +    L  +  L+L    L  ++   LFR    L  L L+DN     +PD   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTF 149

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
            +   L  L L GN +      A   L  L  L L  N++    P  F ++
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 562 FRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRD 619
               Q + L  NR+    A+S     ++  L+L +N L+ +I +  F     L  LDL D
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 620 NKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPI-ALCQLQKLGILDLSHNKLNGSIPS 676
           N     +     +    L  L L    LQ ++       L  L  L L  N L  ++P 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.5 bits (243), Expect = 2e-22
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 22/229 (9%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
                 +    +         D  +      +  L+          +  +  L +L  L 
Sbjct: 18  LANAIKIAAGKS------NVTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  N+I  L P   L NL  +  L LS N + + +    +  L +++ LDL++ +I+  +
Sbjct: 70  LKDNQITDLAP---LKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQIT-DV 122

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
           T LA   NL+VL +  N +        +  L NL  L +G   +    P  L++L  L  
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
           L    N +S ++   +A+L +L  + L +N      PL+  +N   + +
Sbjct: 178 LKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.8 bits (236), Expect = 2e-21
 Identities = 57/295 (19%), Positives = 106/295 (35%), Gaps = 28/295 (9%)

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
              L +   +    + +         A+L  +  L+    G+++     G+  L NL  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE---GVQYLNNLIGL 68

Query: 182 DLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
           +L  N+I+  L  L     +  L +  N L        I  L+++  LDL    +    P
Sbjct: 69  ELKDNQIT-DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
             L+ L  L+VL +  N ++ N+   +A LT+L+YL++ +        L+ L N S L  
Sbjct: 125 --LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD---LTPLANLSKLTT 177

Query: 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP 361
           L      N             L  + L N  +  +   L +  +   + L++  +     
Sbjct: 178 LKA--DDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234

Query: 362 TWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV 416
                 N  L V  +        +    +  +       ++ NLT  L   +  V
Sbjct: 235 F----YNNNLVVPNVVKGPSGAPIAPATISDN----GTYASPNLTWNLTSFINNV 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 48/261 (18%), Positives = 97/261 (37%), Gaps = 44/261 (16%)

Query: 146 GLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLG 205
               L N   +    + ++   T     +L  +  L      ++ ++  +    NL  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLE 69

Query: 206 MRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLP 265
           +++N +    +   +  L  +TEL+L  N L+      ++ L  +K LD++   ++    
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD--V 122

Query: 266 SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKV 325
           + +A L++L+ L L  N      PL+ LTN                           L+ 
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTN---------------------------LQY 155

Query: 326 LQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGIL 385
           L + N  +  + + L +      L    NK+    P   + +   L  + L NN  S + 
Sbjct: 156 LSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS 211

Query: 386 QLPKVKHDLLRHLDISNNNLT 406
            L    +  L  + ++N  +T
Sbjct: 212 PLANTSN--LFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 25/220 (11%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           I + +      ++  L+LSGN        K+  +    + +K L+L      D  +  L 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITD--VTPLA 126

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
            L++L  L L  N+I  ++P   LA L NL+ L++    +S       L NL+ L  L  
Sbjct: 127 GLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKA 180

Query: 184 SANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC 243
             N+IS  ++ LA   NL  + ++NN ++   +   +    NL  + L    +  Q  + 
Sbjct: 181 DDNKIS-DISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFY 236

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            ++L+         N + G   + IA  T  +    +  N
Sbjct: 237 NNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPN 269

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 22/201 (10%)

Query: 63  PILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL 122
           P+ N S     Q ++ LDL+                     L++L L+ N   +  +  L
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL------SNLQVLYLDLNQITN--ISPL 147

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
             LT+L  L++   ++  L P   LANL  L  L    N IS  +    L +L NL  + 
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS---PLASLPNLIEVH 201

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL-- 240
           L  N+IS  ++ LA   NL ++ + N     ++ ++ +    NL   ++      G    
Sbjct: 202 LKNNQIS-DVSPLANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNV-VKGPSGAPIA 255

Query: 241 PWCLSDLIGLKVLDISFNHLS 261
           P  +SD       ++++N  S
Sbjct: 256 PATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 42/246 (17%), Positives = 90/246 (36%), Gaps = 21/246 (8%)

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP 435
               + + I   P + +     +    +N+T  + Q     +  +  +          I 
Sbjct: 4   TQPTAINVIFPDPALAN--AIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVT-TIE 57

Query: 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495
             +  +  L  L+L  N+ + DL+         +  L++S N            L  ++ 
Sbjct: 58  -GVQYLNNLIGLELKDNQIT-DLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKT 111

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555
           L L +   T      L     L VL +  N ++   P  +   + L  L +    +    
Sbjct: 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
           P  + N  +L  L   +N++   I+   +L +++ ++L+NN +S   P  L  ++ L  +
Sbjct: 168 P--LANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 616 DLRDNK 621
            L +  
Sbjct: 223 TLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 22/233 (9%)

Query: 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLK 499
            +     +   ++  +      +      +  L                 L  L  L LK
Sbjct: 17  ALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELK 71

Query: 500 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI 559
           +N  T  +   L N   +  L++S N L       I     +  L ++   +    P  +
Sbjct: 72  DNQIT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 560 NNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619
                LQ+L L  N++  +I+    L+++ +L + N  +S    + L   ++L TL   D
Sbjct: 126 AGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADD 182

Query: 620 NKFFGRIPD--QINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
           NK    I D   + +   L  + L+ N +    P+A      L I+ L++  +
Sbjct: 183 NK----ISDISPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 14/197 (7%)

Query: 474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC 533
           +++      IFP    L     +    ++ T  +    L+   +  L      ++  I  
Sbjct: 3   ITQPTAINVIFPDP-ALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG 58

Query: 534 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYL 593
            +   + L  L +  N +  ++   + N  ++  L+LS N L  ++++   L SI  L L
Sbjct: 59  -VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDL 114

Query: 594 QNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA 653
            +  ++   P  L   + L  L L  N+        +   + L+ L +    +    P+A
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 654 LCQLQKLGILDLSHNKL 670
              L KL  L    NK+
Sbjct: 171 --NLSKLTTLKADDNKI 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 93.9 bits (234), Expect = 3e-22
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
              K         + +       + SLT + L    +  L    G+    N+K L ++  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNI 76

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGS-LTELAPFRNLKVLGMRNNLLNGSVESKGI 220
             ++      +  L+NLE L +    ++   +  L+   +L +L + ++  + S+ +K I
Sbjct: 77  HATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-I 132

Query: 221 CELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALS 280
             L  +  +DL  N     +   L  L  LK L+I F+ +       I +   L  L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 281 DNNFQGE 287
                G+
Sbjct: 190 SQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 24/180 (13%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
             +     L  +    +  +     + +L  + L+   ++      G+    N++ L ++
Sbjct: 22  FKAYLNGLLGQSSTANITEA----QMNSLTYITLANINVTDLT---GIEYAHNIKDLTIN 74

Query: 185 ANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244
               + +   ++   NL+ L +    +  S +   +  L +LT LD+  +  +  +   +
Sbjct: 75  NIHAT-NYNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 245 SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           + L  +  +D+S+N    ++   +  L  L+ L +  +          + +   L  L  
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 10/157 (6%)

Query: 148 ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMR 207
           +  +      L  +  ++    +    + +L  + L+   ++  LT +    N+K L + 
Sbjct: 20  STFKAYLNGLLGQSSTAN----ITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTIN 74

Query: 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
           N           I  L NL  L +   ++       LS L  L +LDIS +    ++ + 
Sbjct: 75  NIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           I  L  +  + LS N    +  +  L     L+ L +
Sbjct: 132 INTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              ++ L ++  +        +Y+       L+ L +   +     +P L+ LTSLT L+
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           + ++       +  +  L  + +++LS+NG  +      L  L  L+ L++  + +    
Sbjct: 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH-DY 174

Query: 193 TELAPFRNLKVLGMRNNLLNG 213
             +  F  L  L   +  + G
Sbjct: 175 RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 11/185 (5%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
                    L  +      +A + +   L  + ++N  ++      I     +  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF 607
            H     P  I+    L+ L +    +      +L  L+S+  L + ++A    I + + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 608 RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSH 667
              ++ ++DL  N     I   +    EL+ L ++ + +     I      KL  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 668 NKLNG 672
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 10/159 (6%)

Query: 347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
            ++ L++  +        ++    ++ L ++N   +    +  + +  L  L I   ++T
Sbjct: 47  TYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSN--LERLRIMGKDVT 101

Query: 407 GMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466
                N+   +  L  +DIS +  + +I   I  + ++  +DLS N    D+        
Sbjct: 102 SDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK--TL 158

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG 505
             L+ L++  +    H +    +  +L  LY  +    G
Sbjct: 159 PELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 395 LRHLDISNNNLTGMLP-QNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 453
           L ++ ++N N+T +   +        +  + I+  +     P  I  +  L  L +    
Sbjct: 46  LTYITLANINVTDLTGIEYA----HNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99

Query: 454 FSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
            +      ++    SL  LD+S +     I      L ++  + L  N     I   L  
Sbjct: 100 VT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT 157

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
              L  L+I  + +  +    I +F  L+ L      +
Sbjct: 158 LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 3/121 (2%)

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
            +       L  + L+   +   +       +I  L + N   +    + +   + L  L
Sbjct: 37  NITEAQMNSLTYITLANINV-TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
            +            ++  + L +L +  +     I   +  L K+  +DLS+N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 676 S 676
            
Sbjct: 154 P 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 561 NFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
            F+      L ++    +  +   ++S+ ++ L N  ++            +  L + + 
Sbjct: 21  TFKAYLNGLLGQSST--ANITEAQMNSLTYITLANINVTDLTGIEYA--HNIKDLTINNI 76

Query: 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN 680
                  + I+  S L  L + G  +       L  L  L +LD+SH+  + SI +    
Sbjct: 77  HA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 681 M 681
           +
Sbjct: 135 L 135

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 19/203 (9%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
            +    NL   +  D      N L S+  +    + I  +   QG+  L N+  L L+ N
Sbjct: 24  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGN 78

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            ++       L NL NL  L L  N++   L+ L   + LK L + +N ++   +  G+ 
Sbjct: 79  KLTDIK---PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGIS---DINGLV 131

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
            L  L  L LG N +       LS L  L  L +  N +S ++   +A LT L+ L LS 
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 187

Query: 282 NNFQGEFPLSLLTNHSNLEVLLL 304
           N+      L  L    NL+VL L
Sbjct: 188 NHISD---LRALAGLKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 22/221 (9%)

Query: 63  PILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL 122
           PI        F E    +L            D  +      +  +  N ++     +  +
Sbjct: 13  PIKQIFSDDAFAETIKDNLK------KKSVTDAVTQNELNSIDQIIANNSDIKS--VQGI 64

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
             L ++T L L  N++  + P   LANL+NL  L L  N +   +    L +L  L+ L 
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLS 118

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           L  N IS  +  L     L+ L + NN +    +   +  L  L  L L +N +   +P 
Sbjct: 119 LEHNGIS-DINGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVP- 173

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            L+ L  L+ L +S NH+S      +A L +L+ L L    
Sbjct: 174 -LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 20/211 (9%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              +  L L+GN      +  D     + K L  L L+ N   D  L  L  L  L +L+
Sbjct: 67  LPNVTKLFLNGN------KLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS 118

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L +N I  +N    L +L  L++L L  N I+       L  LT L+ L L  N+IS  +
Sbjct: 119 LEHNGISDING---LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS-DI 171

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
             LA    L+ L +  N ++   + + +  LKNL  L+L       +     S+L+    
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 253 LDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
           +  +   L    P +I++    E   +  + 
Sbjct: 229 VKNTDGSLVT--PEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 17/183 (9%)

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
            +        NL    +           L ++  +  + + I S     G+  L N+  L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKL 73

Query: 182 DLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
            L+ N+++  +  LA  +NL  L +  N +    +   + +LK L  L L  N +     
Sbjct: 74  FLNGNKLT-DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDING 129

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
             L  L  L+ L +  N ++    +V++ LT L+ L+L DN       +  L   + L+ 
Sbjct: 130 --LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQN 182

Query: 302 LLL 304
           L L
Sbjct: 183 LYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 27/227 (11%)

Query: 64  ILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLN 123
           + +       + L  L L  N      + KD  S    KKLK L+L +N  +D  +  L 
Sbjct: 80  LTDIKPLANLKNLGWLFLDEN------KVKDLSSLKDLKKLKSLSLEHNGISD--INGLV 131

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
            L  L +L L  N+I  +     L+ L  L  L+L  N IS       L  LT L+ L L
Sbjct: 132 HLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYL 185

Query: 184 SANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL--P 241
           S N IS  L  LA  +NL VL + +        +K I    NL   +    N +G L  P
Sbjct: 186 SKNHIS-DLRALAGLKNLDVLELFSQ----ECLNKPINHQSNLVVPNT-VKNTDGSLVTP 239

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
             +SD    +  ++ +     +LP     ++ + Y  ++    +  F
Sbjct: 240 EIISDDGDYEKPNVKW-----HLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 48/236 (20%), Positives = 81/236 (34%), Gaps = 41/236 (17%)

Query: 171 GLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
                      +L    ++          ++  +   N+ +      +GI  L N+T+L 
Sbjct: 19  SDDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPL 290
           L  N L    P  L++L  L  L +  N +  +L S + +L  L+ L+L  N       L
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDINGL 130

Query: 291 SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLD 350
             L                             L+ L L N  +  I + L        L 
Sbjct: 131 VHLPQ---------------------------LESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
           L  N++    P   +   TKL+ L LS N  S +  L  +K+  L  L++ +    
Sbjct: 163 LEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRALAGLKN--LDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 42/247 (17%), Positives = 92/247 (37%), Gaps = 19/247 (7%)

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP 435
                   I              ++   ++T  + QN    +  +  I  + ++ + ++ 
Sbjct: 9   TVPTPIKQIFSDDAFAE--TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SVQ 62

Query: 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495
             I  +  +  L L+ NK +       +    +L +L + EN        +  +L +L+ 
Sbjct: 63  -GIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKS 116

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555
           L L++N  +  I  GL++   L  L + NN ++      +   + LD L +  N +  +I
Sbjct: 117 LSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI 171

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
              +    +LQ L LS+N +   + +   L ++  L L +     +  +         T+
Sbjct: 172 V-PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 616 DLRDNKF 622
              D   
Sbjct: 230 KNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 47/309 (15%), Positives = 89/309 (28%), Gaps = 91/309 (29%)

Query: 219 GICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLA 278
                    + +L + ++   +    ++L  +  +  + + +  ++   I  L ++  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74

Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPS 338
           L+ N      PL+ L N                           L  L L    +K + S
Sbjct: 75  LNGNKLTDIKPLANLKN---------------------------LGWLFLDENKVKDLSS 107

Query: 339 FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398
                                      ++  KL+ L L +N  S I  L  +    L  L
Sbjct: 108 L--------------------------KDLKKLKSLSLEHNGISDINGLVHLPQ--LESL 139

Query: 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 458
            + NN +T                 DI+           +  + +L  L L  N+ S   
Sbjct: 140 YLGNNKIT-----------------DIT----------VLSRLTKLDTLSLEDNQIS--- 169

Query: 459 SATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV 518
               +     L+ L +S+N+           L  L  L L +     K      N     
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 519 VLDISNNLL 527
            +  ++  L
Sbjct: 228 TVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
              +     LK    T  +    LNS  +  +  +N+ +   +   I     +  L ++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFR 608
           N L  +I   + N + L  L L EN++   ++S  +L  +  L L++N +S    + L  
Sbjct: 78  NKLT-DIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGIS--DINGLVH 132

Query: 609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
             +L +L L +NK        ++  ++L  L L  N +   +P+A   L KL  L LS N
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKN 188

Query: 669 KL 670
            +
Sbjct: 189 HI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 15/218 (6%)

Query: 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524
             A     ++ + +       T   L  +  +   N+     ++ G+     +  L ++ 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           N L+   P  + N   L  L + +N ++ ++   + + ++L+ L L  N +   I   ++
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI-SDINGLVH 132

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           L  +  LYL NN ++    + L R T+L TL L DN+        +   ++L+ L L  N
Sbjct: 133 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN 188

Query: 645 YLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML 682
           ++     +A   L+ L +L+L   +      +   N++
Sbjct: 189 HISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLV 224

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 95.8 bits (239), Expect = 6e-21
 Identities = 84/479 (17%), Positives = 155/479 (32%), Gaps = 91/479 (18%)

Query: 101 SKKLKILNLNYNNFNDSVLPYL-NTLTSLTTLNLYYNRIG--GLNP-SQGLANLRNLKAL 156
           S  ++ L++     +D+    L   L     + L    +        S  L     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 157 NLSWNGIS-SGATRLGLG---NLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLN 212
           NL  N +   G   +  G       ++ L L    ++G            VL        
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG--------AGCGVL-------- 105

Query: 213 GSVESKGICELKNLTELDLGENNLEGQLPWCLSDLI-----GLKVLDISFNHLS----GN 263
               S  +  L  L EL L +N L       L + +      L+ L + +  LS      
Sbjct: 106 ----SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 264 LPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQL 323
           L SV+      + L +S+N+   E  + +L          LK                QL
Sbjct: 162 LASVLRAKPDFKELTVSNNDI-NEAGVRVLCQG-------LKD------------SPCQL 201

Query: 324 KVLQLPNCNL-----KVIPSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQNNTKLEVL 374
           + L+L +C +     + +   +  +   + L L SNKL    +      L+  +++L  L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 375 RLSNNSFS--GILQLPKV--KHDLLRHLDISNNNLTG----MLPQNMGIVIQKLMYIDIS 426
            +     +  G   L +V    + L+ L ++ N L      +L + +     +L  + + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 427 KNNFEGNIPYSIGEM----KELFLLDLSRNKFSGD----LSATSVIRCASLEYLDVSENN 478
             +F          +    + L  L +S N+        L        + L  L +++ +
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 479 F----YGHIFPTYMNLTQLRWLYLKNNHFTGK----IKAGLLNSHG-LVVLDISNNLLS 528
                   +  T +    LR L L NN         +   +      L  L + +   S
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 91/463 (19%), Positives = 161/463 (34%), Gaps = 83/463 (17%)

Query: 74  QELQILDLSGNYF--DGWNENKDYDSSGSSKKLKILNLNYNNFND----SVLPYLNTLTS 127
            ++Q LD+         W E          ++ +++ L+     +     +   L    +
Sbjct: 3   LDIQSLDIQCEELSDARWAE-----LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 128 LTTLNLYYNRIG--GLNP-SQGLANL-RNLKALNLSWNGISS-GATRLG--LGNLTNLEV 180
           L  LNL  N +G  G++   QGL      ++ L+L    ++  G   L   L  L  L+ 
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 181 LDLSANRISGS----LTE--LAPFRNLKVLGMRNNLLNGSVESKGICEL----KNLTELD 230
           L LS N +  +    L E  L P   L+ L +    L  +   + +  +     +  EL 
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELT 176

Query: 231 LGENNLEGQLPWCLSDLI-----GLKVLDISFNHLS----GNLPSVIANLTSLEYLALSD 281
           +  N++       L   +      L+ L +    ++     +L  ++A+  SL  LAL  
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL-----KVI 336
           N         L         LL               P+ +L+ L +  C +       +
Sbjct: 237 NKLGDVGMAEL------CPGLLH--------------PSSRLRTLWIWECGITAKGCGDL 276

Query: 337 PSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQNNTKLEVLRLSNNSFS--GILQLPKV 390
              L  +   K L L+ N+L           L++   +LE L + + SF+         V
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 391 --KHDLLRHLDISNNNLTG----MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM--- 441
             ++  L  L ISNN L       L Q +G     L  + ++  +   +   S+      
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 442 -KELFLLDLSRNKFSGD----LSATSVIRCASLEYLDVSENNF 479
              L  LDLS N         L  +       LE L + +  +
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 89.6 bits (223), Expect = 5e-19
 Identities = 85/385 (22%), Positives = 129/385 (33%), Gaps = 78/385 (20%)

Query: 58  SSDGFPILNFSLFLPFQELQILDLSGNYF--DGWNENKDYDSSGSSKKLKILNLNYNNFN 115
              G   +   L  P  ++Q L L        G        +  +   L+ L+L+ N   
Sbjct: 69  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL--SSTLRTLPTLQELHLSDNLLG 126

Query: 116 DSVLPYL-----NTLTSLTTLNLYYNRI---GGLNPSQGLANLRNLKALNLSWNGIS-SG 166
           D+ L  L     +    L  L L Y  +        +  L    + K L +S N I+ +G
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186

Query: 167 ATRLGLG---NLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
              L  G   +   LE L L +  ++          N + L               +   
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGVTS--------DNCRDL------------CGIVASK 226

Query: 224 KNLTELDLGENNLEGQLPWCLSDLI-----GLKVLDISFNHLS----GNLPSVIANLTSL 274
            +L EL LG N L       L   +      L+ L I    ++    G+L  V+    SL
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 275 EYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL- 333
           + L+L+ N    E    L       E LL               P  QL+ L + +C+  
Sbjct: 287 KELSLAGNELGDEGARLL------CETLLE--------------PGCQLESLWVKSCSFT 326

Query: 334 ----KVIPSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQNNTKLEVLRLSNNSFS--G 383
                   S L        L +S+N+L    V      L Q  + L VL L++   S   
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386

Query: 384 ILQLPKV--KHDLLRHLDISNNNLT 406
              L      +  LR LD+SNN L 
Sbjct: 387 CSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 9e-19
 Identities = 102/516 (19%), Positives = 168/516 (32%), Gaps = 123/516 (23%)

Query: 151 RNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNL 210
            ++++L++    +S       L  L   +V+ L    ++            K +      
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT--------EARCKDI------ 48

Query: 211 LNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIG-----LKVLDISFNHLS---- 261
                 S  +     L EL+L  N L      C+   +      ++ L +    L+    
Sbjct: 49  ------SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 262 GNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF 321
           G L S +  L +L+ L LSDN         L          LL                 
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------GLLDPQCR------------ 143

Query: 322 QLKVLQLPNCNL-----KVIPSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQNNTKLE 372
            L+ LQL  C+L     + + S L  + DFK L +S+N +    V      L  +  +LE
Sbjct: 144 -LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 373 VLRLSNNSFS--GILQLPKV--KHDLLRHLDISNNNLTG----MLPQNMGIVIQKLMYID 424
            L+L +   +      L  +      LR L + +N L       L   +     +L  + 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 425 ISKNNFEGNIPYSIGEM----KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY 480
           I +          +  +    + L  L L+ N+  GD  A  +  C +L           
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLL--CETLLE--------- 310

Query: 481 GHIFPTYMNLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLLSGHIPCWIG 536
                      QL  L++K+  FT        + L  +  L+ L ISNN L         
Sbjct: 311 --------PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED------A 356

Query: 537 NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL----FGSIASSL-NLSSIMHL 591
               L   L                   L++L L++  +      S+A++L    S+  L
Sbjct: 357 GVRELCQGLGQPGS-------------VLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 592 YLQNNALSGQIPSTLFRS-----TELLTLDLRDNKF 622
            L NN L       L  S       L  L L D  +
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 85/493 (17%), Positives = 144/493 (29%), Gaps = 131/493 (26%)

Query: 224 KNLTELDLGENNL-EGQLPWCLSDLIGLKVLDISFNHLS----GNLPSVIANLTSLEYLA 278
            ++  LD+    L + +    L  L   +V+ +    L+     ++ S +    +L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL----- 333
           L  N       +  +          L+             P+ +++ L L NC L     
Sbjct: 63  LRSNELGDVG-VHCVLQG-------LQT------------PSCKIQKLSLQNCCLTGAGC 102

Query: 334 KVIPSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK 389
            V+ S L      + L LS N L    +      L+    +LE L+L   S S       
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS------- 155

Query: 390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449
                      S   L  +L             + +S N+        + +        L
Sbjct: 156 ---------AASCEPLASVLRAK-----PDFKELTVSNNDINEAGVRVLCQG-------L 194

Query: 450 SRNKFSGDLSATSVIRCASLEYLDVSENNF----YGHIFPTYMNLTQLRWLYLKNNHFTG 505
             +                LE L +            +     +   LR L L +N    
Sbjct: 195 KDSP-------------CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 506 K-----IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 560
                     L  S  L  L I    ++       G      VL   ++           
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITA-----KGCGDLCRVLRAKES----------- 285

Query: 561 NFRQLQLLDLSENRLFGSIASSL------NLSSIMHLYLQNNALSGQ----IPSTLFRST 610
               L+ L L+ N L    A  L          +  L++++ + +        S L ++ 
Sbjct: 286 ----LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 611 ELLTLDLRDNKFFGRIPDQ---------INNHSELRVLLLRGNYLQGQ----IPIALCQL 657
            LL L + +N+    + D              S LRVL L    +       +   L   
Sbjct: 342 FLLELQISNNR----LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 658 QKLGILDLSHNKL 670
             L  LDLS+N L
Sbjct: 398 HSLRELDLSNNCL 410

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.5 bits (232), Expect = 5e-20
 Identities = 71/435 (16%), Positives = 130/435 (29%), Gaps = 62/435 (14%)

Query: 119 LPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNL 178
           LP  N  +   + N +YN I G   +   +     +   L     +   + L    +   
Sbjct: 5   LPINNNFS--LSQNSFYNTISGT-YADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 179 EVLDLSANRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNL 236
             L L+       L+ L       + VL +  N L    E        +L  LD  +N L
Sbjct: 62  SELQLNRLN----LSSLPDNLPPQITVLEITQNALISLPE-----LPASLEYLDACDNRL 112

Query: 237 EGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNH 296
              LP        LK LD+  N L+  LP + A L  +      +N      P       
Sbjct: 113 S-TLP---ELPASLKHLDVDNNQLT-MLPELPALLEYIN---ADNNQLT-MLPELP---- 159

Query: 297 SNLEVLLLKVSSNLRLKTENWIPTF--QLKVLQLPNCNLKVIPSFLLH----QYDFKFLD 350
           ++LEVL +    N +L     +P     L+ L +    L+ +P+  +     +    F  
Sbjct: 160 TSLEVLSV---RNNQLTF---LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFR 213

Query: 351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLP 410
              N++  + P  ++        + L +N  S      +            +        
Sbjct: 214 CRENRIT-HIPENILS-LDPTCTIILEDNPLS---SRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 411 QNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS----------- 459
            +           D     F  N    + ++   F  +   N FS  L            
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNT 328

Query: 460 -------ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL 512
                  A  + + ++   L             +  +   L W  L+      +   GL 
Sbjct: 329 SGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLF 388

Query: 513 NSHGLVVLDISNNLL 527
           ++    +L +   + 
Sbjct: 389 DNDTGALLSLGREMF 403

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 3e-18
 Identities = 55/270 (20%), Positives = 90/270 (33%), Gaps = 43/270 (15%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
             +   L L+        +N          ++ +L +  N      LP      SL  L+
Sbjct: 58  INQFSELQLNRLNLSSLPDN-------LPPQITVLEITQNAL--ISLP--ELPASLEYLD 106

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNL-TNLEVLDLSANRISGS 191
              NR+  L          +LK L++  N ++       L  L   LE ++   N+++  
Sbjct: 107 ACDNRLSTLPEL-----PASLKHLDVDNNQLTM------LPELPALLEYINADNNQLT-M 154

Query: 192 LTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK 251
           L EL    +L+VL +RNN L    E       ++L  LD+  N LE  LP         +
Sbjct: 155 LPEL--PTSLEVLSVRNNQLTFLPEL-----PESLEALDVSTNLLE-SLPAVPVRNHHSE 206

Query: 252 ----VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
                     N ++ ++P  I +L     + L DN      PLS     S  +       
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN------PLSSRIRESLSQQTAQPDY 259

Query: 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIP 337
              R+               L +      P
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 4e-17
 Identities = 49/295 (16%), Positives = 96/295 (32%), Gaps = 33/295 (11%)

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE--MKELFLLDLSRNKFS 455
            +   N ++G    +      K     +   N        + E  + +   L L+R    
Sbjct: 15  QNSFYNTISG-TYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLN-- 70

Query: 456 GDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH 515
             LS+        +  L++++N       P       L +L   +N  +  +     +  
Sbjct: 71  --LSSLPDNLPPQITVLEITQNAL--ISLPE--LPASLEYLDACDNRLS-TLPELPAS-- 121

Query: 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
            L  LD+ NN L+  +P       Y++      N L   +P    +   L++L +  N+L
Sbjct: 122 -LKHLDVDNNQLT-MLPELPALLEYINA---DNNQLT-MLPELPTS---LEVLSVRNNQL 172

Query: 576 FGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLT----LDLRDNKFFGRIPDQIN 631
              +       S+  L +  N L   +P+   R+            R+N+    IP+ I 
Sbjct: 173 -TFLPELP--ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENIL 227

Query: 632 NHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWRE 686
           +      ++L  N L  +I  +L Q              + S            +
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 62/300 (20%), Positives = 110/300 (36%), Gaps = 34/300 (11%)

Query: 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKHDLLRHLDISNNNLTG 407
            +   N +             K E   L   + +  + L K    +    L ++  NL+ 
Sbjct: 15  QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 408 MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
            LP N+     ++  ++I++N    ++P     ++ L   D   N+ S  L        A
Sbjct: 74  -LPDNLP---PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-TLPEL----PA 120

Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527
           SL++LDV  N     + P       L ++   NN  T  +     +   L VL + NN L
Sbjct: 121 SLKHLDVDNNQL--TMLPE--LPALLEYINADNNQLT-MLPELPTS---LEVLSVRNNQL 172

Query: 528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ----LLDLSENRLFGSIASSL 583
           +  +P    +   L+ L +S N LE ++P         +         ENR+   I  ++
Sbjct: 173 T-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENI 226

Query: 584 -NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
            +L     + L++N LS +I  +L + T           F      Q   H  L   +  
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 6e-15
 Identities = 56/276 (20%), Positives = 91/276 (32%), Gaps = 34/276 (12%)

Query: 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGM 408
              + N+ V      L+        L+L+  + S    LP      +  L+I+ N L   
Sbjct: 42  PGENRNEAVSLLKECLINQ---FSELQLNRLNLS---SLPDNLPPQITVLEITQNALI-S 94

Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCAS 468
           LP+        L Y+D   N     +P     +K L   D+  N+ +  L        A 
Sbjct: 95  LPEL----PASLEYLDACDNRLS-TLPELPASLKHL---DVDNNQLT-MLPEL----PAL 141

Query: 469 LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS 528
           LEY++   N     + P     T L  L ++NN  T  +     +   L  LD+S NLL 
Sbjct: 142 LEYINADNNQL--TMLPE--LPTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE 193

Query: 529 GHIPCWIGNFSYL----DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
             +P       +           +N +  +IP  I +      + L +N L   I  SL+
Sbjct: 194 -SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
             +    Y                    L   +   
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 6e-15
 Identities = 42/305 (13%), Positives = 88/305 (28%), Gaps = 41/305 (13%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
             ++ +L+++ N                   L+ L+   N  +   LP      SL  L+
Sbjct: 79  PPQITVLEITQNALI--------SLPELPASLEYLDACDNRLST--LP--ELPASLKHLD 126

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           +  N++  L           L+ +N   N ++           T+LEVL +  N+    L
Sbjct: 127 VDNNQLTMLPEL-----PALLEYINADNNQLTMLPEL-----PTSLEVLSVRNNQ----L 172

Query: 193 TELAPF-RNLKVLGMRNNLLNGSVESKGICELKNLTE----LDLGENNLEGQLPWCLSDL 247
           T L     +L+ L +  NLL             +  E        EN +   +P  +  L
Sbjct: 173 TFLPELPESLEALDVSTNLLESL--PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229

Query: 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
                + +  N LS  +   ++  T+          F          +    + +     
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA--- 286

Query: 308 SNLRLKTENWIPTFQLKVLQLPNCN-LKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQ 366
                  ++ +           + N        L      +       ++        + 
Sbjct: 287 -WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEK--LS 343

Query: 367 NNTKL 371
            + +L
Sbjct: 344 ASAEL 348

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.5 bits (149), Expect = 6e-10
 Identities = 57/329 (17%), Positives = 97/329 (29%), Gaps = 102/329 (31%)

Query: 464 IRCASLEYLDVSENNFYGHIFPTYMN-------LTQLRWLYLKNNHFTGKIKAGLLNSHG 516
           I         +S+N+FY  I  TY +         +        N     +K  L+N   
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ-- 60

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
              L ++   LS  +P  +     + VL +++N L  ++P    +   L+ LD  +NRL 
Sbjct: 61  FSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNRL- 112

Query: 577 GSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634
               S+L    +S+ HL + NN L+                          +P+      
Sbjct: 113 ----STLPELPASLKHLDVDNNQLT-------------------------MLPELPAL-- 141

Query: 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGS 694
            L  +    N L   +P     L+ L    + +N+L   +P                   
Sbjct: 142 -LEYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPE------------------ 177

Query: 695 GLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMS 754
                     L            L +  +   +LP                N  +     
Sbjct: 178 ------LPESLE----------ALDVSTNLLESLPAVP-----------VRNHHSEETEI 210

Query: 755 GIDLSYNELTGEIPSEIGELPKVRALNLS 783
                 N +T  IP  I  L     + L 
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILE 238

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
                 NL   +  D  L     L+ +   N   + I  L    G+    NLK L+LS N
Sbjct: 19  ANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHN 73

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            IS  +    L +LT LE L ++ NR+  +L  +     L  L + NN L    ++  + 
Sbjct: 74  QISDLS---PLKDLTKLEELSVNRNRLK-NLNGIP-SACLSRLFLDNNELR---DTDSLI 125

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
            LKNL  L +  N L+  +   L  L  L+VLD+  N ++      +  L  + ++ L+ 
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181

Query: 282 NN 283
             
Sbjct: 182 QK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 45/181 (24%), Positives = 67/181 (37%), Gaps = 18/181 (9%)

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
              L +    NL    +  L        L  ++  N   + I S A   G+   TNL+ L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA---GMQFFTNLKEL 68

Query: 182 DLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
            LS N+IS  L+ L     L+ L +  N L  ++          L+ L L  N L     
Sbjct: 69  HLSHNQIS-DLSPLKDLTKLEELSVNRNRLK-NLNG---IPSACLSRLFLDNNELRDTDS 123

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
             L  L  L++L I  N L  ++   +  L+ LE L L  N          LT    +  
Sbjct: 124 --LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITN---TGGLTRLKKVNW 176

Query: 302 L 302
           +
Sbjct: 177 I 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 45/213 (21%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              +Q  +   +        +          LK L+L++N  +D  L  L  LT L  L+
Sbjct: 40  LSGVQNFNGDNSNI------QSLAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           +  NR+  LN          L  L L  N +        L +L NLE+L +  N++  S+
Sbjct: 92  VNRNRLKNLNGIPSA----CLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLK-SI 143

Query: 193 TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
             L     L+VL +  N +     + G+  LK +  +DL       +      +L     
Sbjct: 144 VMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 253 LDISFNHLSGNL--PSVIANLTSLEYLALSDNN 283
           +        G    P  I+N  S     +    
Sbjct: 201 VKD----PDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 17/162 (10%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
           L+ L ++ N            +   S  L  L L+ N   D     L  L +L  L++  
Sbjct: 87  LEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRN 137

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
           N++  +     L  L  L+ L+L  N I++     GL  L  +  +DL+  +       +
Sbjct: 138 NKLKSIVM---LGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKC--VNEPV 189

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE 237
                L +     +     +    I    +  +  +      
Sbjct: 190 KYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
            L       L     T  +        G+   +  N+ +   +   +  F+ L  L +S 
Sbjct: 17  GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFR 608
           N +  ++   + +  +L+ L ++ NRL     + +  + +  L+L NN L      +L  
Sbjct: 73  NQIS-DLS-PLKDLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELRD--TDSLIH 126

Query: 609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
              L  L +R+NK   +    +   S+L VL L GN +     +   +L+K+  +DL+  
Sbjct: 127 LKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQ 182

Query: 669 KL 670
           K 
Sbjct: 183 KC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 42/246 (17%)

Query: 376 LSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP 435
                 + +   P + +      ++   ++T ++ Q     +  +   +   +N + ++ 
Sbjct: 4   QRPTPINQVFPDPGLAN--AVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNIQ-SLA 57

Query: 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495
             +     L  L LS N+ S             L  L                +LT+L  
Sbjct: 58  -GMQFFTNLKELHLSHNQIS------------DLSPLK---------------DLTKLEE 89

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555
           L +  N     +    + S  L  L + NN L       + +   L++L +  N L+ +I
Sbjct: 90  LSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SI 143

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
              +    +L++LDL  N +  +      L  +  + L       +            T+
Sbjct: 144 V-MLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 616 DLRDNK 621
              D +
Sbjct: 202 KDPDGR 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 22/173 (12%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
           +    L+L +N +  L        L NL +L LS N ++     A       + NL  LD
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVPNLRYLD 94

Query: 183 LSANRI----SGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG 238
           LS+N +        ++L   + L+VL + NN +   V+     ++  L +L L +N +  
Sbjct: 95  LSSNHLHTLDEFLFSDL---QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 239 QLPW----CLSDLIGLKVLDISFNHLSGNLPSVIANLTSL--EYLALSDNNFQ 285
           + P       + L  L +LD+S N L     + +  L +     L L +N  +
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 21/168 (12%)

Query: 467 ASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDIS 523
           +    LD+S NN    +   +    LT L  L L +NH    I +        L  LD+S
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 524 NNLLSGHIPCWIGNFSY---LDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRL---- 575
           +N L   +      FS    L+VLL+  NH+   +      +  QLQ L LS+N++    
Sbjct: 97  SNHLH-TLD--EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 576 FGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELL---TLDLRDN 620
              I     L  +M L L +N L  ++P T  +         L L +N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 29/156 (18%)

Query: 70  FLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLP- 120
                 L  L LS N+        F                 L+ L+L+ N+     L  
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISSEAFVP------------VPNLRYLDLSSNHL--HTLDE 105

Query: 121 -YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL--GLGNLTN 177
              + L +L  L LY N I  +       ++  L+ L LS N IS     L      L  
Sbjct: 106 FLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 178 LEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNG 213
           L +LDLS+N++   L      + L         L+ 
Sbjct: 165 LMLLDLSSNKLK-KLPLTD-LQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 538 FSYLDVLLMSKNHLEGNIPVQI--NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYL 593
            SY  +L +S N+L   +  +        L  L LS N L   I+S     + ++ +L L
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDL 95

Query: 594 QNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIP 651
            +N L   +   LF     L  L L +N     +      + ++L+ L L  N +  + P
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 652 ----IALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYG 693
                   +L KL +LDLS NKL     +    +  W +    L+ 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 47/204 (23%), Positives = 71/204 (34%), Gaps = 43/204 (21%)

Query: 332 NLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI-----LQ 386
            L  +P  L        LDLS N L      W     T L  L LS+N  + I     + 
Sbjct: 29  QLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86

Query: 387 LPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFL 446
           +P      LR+LD+S+N+L   L + +                F          ++ L +
Sbjct: 87  VPN-----LRYLDLSSNHLH-TLDEFL----------------FSD--------LQALEV 116

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENN---FYGHIFPTYMNLTQLRWLYLKNNHF 503
           L L  N     +   +    A L+ L +S+N    F   +      L +L  L L +N  
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 504 TGKIKAGL--LNSHGLVVLDISNN 525
                  L  L +     L + NN
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 29/183 (15%)

Query: 263 NLPSVIANL-TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIP-- 319
            LP+V  +L +    L LS NN          T  +NL  LLL   S+  L     I   
Sbjct: 29  QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL---SHNHLNF---ISSE 82

Query: 320 TF----QLKVLQLPNCNLKVIPSFLLHQYDF-KFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
            F     L+ L L + +L  +  FL       + L L +N +V        ++  +L+ L
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKL 141

Query: 375 RLSNN--------SFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
            LS N              +LPK     L  LD+S+N L   LP      +   +   + 
Sbjct: 142 YLSQNQISRFPVELIKDGNKLPK-----LMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

Query: 427 KNN 429
            +N
Sbjct: 196 LHN 198

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 60/260 (23%), Positives = 94/260 (36%), Gaps = 59/260 (22%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
            S   L+L +N +  L       +   L+ L+LS   I +   GA      +L++L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLI 82

Query: 183 LSANRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           L+ N     +  LA   F                        L +L +L   E NL    
Sbjct: 83  LTGNP----IQSLALGAFSG----------------------LSSLQKLVAVETNLASLE 116

Query: 241 PWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL 299
            + +  L  LK L+++ N + S  LP   +NLT+LE+L LS N  Q     + L     +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 300 EVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGN 359
            +L L                     L L    +  I      +   K L L +N+L  +
Sbjct: 176 PLLNLS--------------------LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-S 214

Query: 360 FPTWLMQNNTKLEVLRLSNN 379
            P  +    T L+ + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 16/192 (8%)

Query: 103 KLKILNLNYNNFNDSVLPY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160
           +L++L+L+        +      +L+ L+TL L  N I  L      + L +L+ L    
Sbjct: 53  ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVE 109

Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFR---NLKVLGMRNNLLNGSVES 217
             ++S      +G+L  L+ L+++ N I  S      F    NL+ L + +N +  S+  
Sbjct: 110 TNLASLENFP-IGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 218 KGICELKNLT----ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273
             +  L  +      LDL  N +   +       I LK L +  N L      +   LTS
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 274 LEYLALSDNNFQ 285
           L+ + L  N + 
Sbjct: 226 LQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 15/212 (7%)

Query: 467 ASLEYLDVSENNFYGHIFPTYM-NLTQLRWLYLKNNHFTGKIKAGLLNSHG-LVVLDISN 524
            S + LD+S N    H+      +  +L+ L L        I+ G   S   L  L ++ 
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS-- 582
           N +           S L  L+  + +L       I + + L+ L+++ N +  S      
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEY 144

Query: 583 -LNLSSIMHLYLQNNALSGQIPSTLFRS-----TELLTLDLRDNKFFGRIPDQINNHSEL 636
             NL+++ HL L +N +   I  T  R         L+LDL  N     I         L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRL 202

Query: 637 RVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
           + L L  N L+        +L  L  + L  N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 49/190 (25%), Positives = 71/190 (37%), Gaps = 42/190 (22%)

Query: 70  FLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY 121
           +     L  L L+GN         F G               L+ L     N   + L  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGL------------SSLQKLVAVETNL--ASLEN 117

Query: 122 --LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRL--GLGNLTN 177
             +  L +L  LN+ +N I      +  +NL NL+ L+LS N I S        L  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 178 LEV-LDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
           L + LDLS N ++    G+  E+     LK L +  N L  SV       L +L ++ L 
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 232

Query: 233 ENNLEGQLPW 242
            N      PW
Sbjct: 233 TN------PW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 45/240 (18%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
              + L LS N    +            L+ LD+S   +                   I 
Sbjct: 28  FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQ-----------------TIE 68

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT 486
              ++         +  L  L L+ N     L+  +    +SL+ L   E N        
Sbjct: 69  DGAYQS--------LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYL---- 541
             +L  L+ L + +N           ++   L  LD+S+N +   I C   +   L    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMP 176

Query: 542 ---DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNN 596
                L +S N +   I        +L+ L L  N+L  S+   +   L+S+  ++L  N
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 18/209 (8%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP--TYMNLTQLRWLYLKNNHFT 504
           LDLS N     L + S      L+ LD+S             Y +L+ L  L L  N   
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 505 GKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ--INN 561
             +  G  +    L  L      L+      IG+   L  L ++ N ++ +  +    +N
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

Query: 562 FRQLQLLDLSENRL----FGSIASSLNLSSI-MHLYLQNNALSGQIPSTLFRSTELLTLD 616
              L+ LDLS N++       +     +  + + L L  N ++  I    F+   L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELA 206

Query: 617 LRDNKFFGRIPDQINNH-SELRVLLLRGN 644
           L  N+    +PD I +  + L+ + L  N
Sbjct: 207 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 561 NFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDL 617
           +F +LQ+LDLS   +  +I      +LS +  L L  N +   +    F   + L  L  
Sbjct: 50  SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 618 RDNKFFGRIPDQI-NNHSELRVLLLRGNYLQG-QIPIALCQLQKLGILDLSHNKLNGSIP 675
            +      + +    +   L+ L +  N +Q  ++P     L  L  LDLS NK+  SI 
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

Query: 676 S 676
            
Sbjct: 166 C 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 581 SSLNLSSI--------MHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI- 630
             LN   I         +L L  N L   + S  F S  EL  LDL   +    I D   
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAY 72

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
            + S L  L+L GN +Q     A   L  L  L      L  S+ +
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLEN 117

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 56/329 (17%), Positives = 94/329 (28%), Gaps = 88/329 (26%)

Query: 100 SSKKLKILNLNYNNFNDSVLPY----LNTLTSLTTLNLYYNRIGGLNP---------SQG 146
               +K + L+ N        +    + +   L          G +            Q 
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 147 LANLRNLKALNLSWNGIS-SGATRLG--LGNLTNLEVLDLSANRIS-------------- 189
           L     L  + LS N    +    L   L   T LE L L  N +               
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 190 GSLTELAPFRNLKVLGMRNNLL-NGSVE--SKGICELKNLTELDLGENNL-----EGQLP 241
               +      L+ +    N L NGS++  +K     + L  + + +N +     E  L 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 242 WCLSDLIGLKVLDISFNHLSGN----LPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
             L+    LKVLD+  N  +      L   + +  +L  L L+D         +++    
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--- 266

Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL- 356
                      N+ L+T                                  L L  N++ 
Sbjct: 267 -----AFSKLENIGLQT----------------------------------LRLQYNEIE 287

Query: 357 ---VGNFPTWLMQNNTKLEVLRLSNNSFS 382
              V    T + +    L  L L+ N FS
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 52/333 (15%), Positives = 91/333 (27%), Gaps = 74/333 (22%)

Query: 127 SLTTLNLYYNRIG--GLNP-SQGLANLRNLKALNLSWNGIS-SGATRLG--LGNLTNLEV 180
           S+   +L  + I           L    ++K + LS N I    A  L   + +  +LE+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 181 LDLSANRISGSLTE-----------LAPFRNLKVLGMRNNLLNGSVESKGICEL----KN 225
            + S         E           L     L  + + +N   G    + + +       
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123

Query: 226 LTELDLGENNL-------------EGQLPWCLSDLIGLKVLDISFNHLSGN----LPSVI 268
           L  L L  N L             E  +     +   L+ +    N L            
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 269 ANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL 328
            +   L  + +  N  + E    LL          L     L+             VL L
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLE-------GLAYCQELK-------------VLDL 223

Query: 329 PNCNL-----KVIPSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQN-NTKLEVLRLSN 378
            +          +   L    + + L L+   L             +  N  L+ LRL  
Sbjct: 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283

Query: 379 NSFS-----GILQLPKVKHDLLRHLDISNNNLT 406
           N         +  +   K   L  L+++ N  +
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 79.0 bits (195), Expect = 8e-16
 Identities = 52/254 (20%), Positives = 84/254 (33%), Gaps = 43/254 (16%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND-------------SVLPYL 122
           L  + LS N F    +    D       L+ L L+ N                 +V    
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 123 NTLTSLTTLNLYYNRI---GGLNPSQGLANLRNLKALNLSWNGISS-GATRL---GLGNL 175
                L ++    NR+        ++   + R L  + +  NGI   G   L   GL   
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 176 TNLEVLDLSANRISG----SLTE-LAPFRNLKVLGMRNNLLNGSVESKGICEL------K 224
             L+VLDL  N  +     +L   L  + NL+ LG+ + LL  +  +  + +        
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENI 274

Query: 225 NLTELDLGENNLEGQLPWCLSDLIG-----LKVLDISFNHLS------GNLPSVIANLTS 273
            L  L L  N +E      L  +I      L  L+++ N  S        +  V +    
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334

Query: 274 LEYLALSDNNFQGE 287
            E   L D     +
Sbjct: 335 GELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 54/315 (17%), Positives = 99/315 (31%), Gaps = 68/315 (21%)

Query: 322 QLKVLQLPNCNL-----KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL---------MQN 367
            +K + L    +     + +   +  + D +  + S                     +  
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 368 NTKLEVLRLSNNSFS--GILQLPKV--KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYI 423
             KL  +RLS+N+F       L     KH  L HL + NN L       +   +Q+L   
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 424 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV----IRCASLEYLDVSENNF 479
             +KN               L  +   RN+   + S             L  + + +N  
Sbjct: 153 KKAKNA------------PPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

Query: 480 YGH-----IFPTYMNLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLLSGH 530
                   +        +L+ L L++N FT      +   L +   L  L +++ LLS  
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA- 258

Query: 531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL----FGSIASSL--N 584
                G  + +D     +N               LQ L L  N +      ++ + +   
Sbjct: 259 ----RGAAAVVDAFSKLEN-------------IGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 585 LSSIMHLYLQNNALS 599
           +  ++ L L  N  S
Sbjct: 302 MPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 52/327 (15%), Positives = 104/327 (31%), Gaps = 68/327 (20%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQK---LMYIDISKNNFEGNIPYSIGEM----KELFLL 447
           +    +  + +T    +++  V+ +   +  I +S N         + E     K+L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 448 DLSRNKFSGDLS----------ATSVIRCASLEYLDVSENNFYG----HIFPTYMNLTQL 493
           + S   F+G +             ++++C  L  + +S+N F       +       T L
Sbjct: 66  EFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG 553
             LYL NN                    I+  L    +     N   L  ++  +N L  
Sbjct: 125 EHLYLHNNGLG---PQA--------GAKIARALQELAVNKKAKNAPPLRSIICGRNRL-E 172

Query: 554 NIPVQ-----INNFRQLQLLDLSENRLF-----GSIASSL-NLSSIMHLYLQNNALSGQ- 601
           N  ++       + R L  + + +N +        +   L     +  L LQ+N  +   
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 602 ---IPSTLFRSTELLTLDLRDNKFFGRIPD----------QINNHSELRVLLLRGNYLQG 648
              +   L     L  L L D      +                +  L+ L L+ N ++ 
Sbjct: 233 SSALAIALKSWPNLRELGLNDC----LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 649 QIPIALCQ-----LQKLGILDLSHNKL 670
                L       +  L  L+L+ N+ 
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.3 bits (203), Expect = 4e-17
 Identities = 58/249 (23%), Positives = 93/249 (37%), Gaps = 21/249 (8%)

Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPT---YMNLTQLRWLYL 498
           + L  L    +  +     T +I+  SL+ L V        I       + ++ L+ L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 499 KNNHFTGKIKAGLLNSHG--LVVLDISNNLLSGHIPCWIGNFSYLD----VLLMSKNHLE 552
           +N   TG     LL + G  L +L++ N   +           +L     VL +++ H  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 553 GNIPVQINNFRQLQLLDLSENRLFGSI-----ASSLNLSSIMHLYLQNN---ALSGQIPS 604
                Q+  F  L  LDLS+N   G          L   ++  L L+N      SG   +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 605 TLFRSTELLTLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQGQIPIALCQLQKLGIL 663
                 +L  LDL  N           +  S+L  L L    L+    +      KL +L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVL 279

Query: 664 DLSHNKLNG 672
           DLS+N+L+ 
Sbjct: 280 DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 7e-16
 Identities = 57/306 (18%), Positives = 98/306 (32%), Gaps = 46/306 (15%)

Query: 94  DYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIG----GLNPSQGLAN 149
           D +  G  + L+ L    +   D    + + + SL+   L           L  +  +  
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADL-GQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 150 LRNLKALNLSWNGIS-SGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMR- 207
           +  L+ L L    ++ +    L      +L +L+L     +     LA  +     G++ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 208 ---NNLLNGSVESKGICELKNLTELDLGENNLEGQLP----WCLSDLIGLKVLDISFNH- 259
                  + +   + +     L+ LDL +N   G+       C      L+VL +     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 260 --LSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENW 317
              SG   ++ A    L+ L LS N+ +           S L  L L  S          
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL--SFT-------- 263

Query: 318 IPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS 377
                          LK +P  L  +     LDLS N+L  N     +     +  L L 
Sbjct: 264 --------------GLKQVPKGLPAK--LSVLDLSYNRLDRNPSPDELPQ---VGNLSLK 304

Query: 378 NNSFSG 383
            N F  
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 47/223 (21%), Positives = 75/223 (33%), Gaps = 33/223 (14%)

Query: 69  LFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSL 128
           L     +L IL+L    +   +             LK+L++   +  +     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 129 TTLNLYYNRIGG---LNPSQGLANLRNLKALNLSWNGISS--GATRLGLGNLTNLEVLDL 183
           +TL+L  N   G   L  +        L+ L L   G+ +  G           L+ LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 184 SANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC 243
           S                       +N L  +  +        L  L+L    L+ Q+P  
Sbjct: 236 S-----------------------HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
           L     L VLD+S+N L  N       L  +  L+L  N F  
Sbjct: 272 LPA--KLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 36/265 (13%)

Query: 347 KFLDLSSNKLVGNFPTWLMQ--NNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISN 402
           K L + + ++        ++    + L+ L L N   +G    P ++     L  L++ N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 403 NNLTGM---LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
            +       L +    +   L  + I++ +        +     L  LDLS N   G+  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 460 ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT---GKIKAGLLNSHG 516
             S +                       +    L+ L L+N       G   A       
Sbjct: 191 LISAL---------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 517 LVVLDISNNLLSGHIPCWIGNF-SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
           L  LD+S+N L         ++ S L+ L +S   L+  +P  +    +L +LDLS NRL
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRL 286

Query: 576 FGSIASSLNLSSIMHLYLQNNALSG 600
                S   L  + +L L+ N    
Sbjct: 287 -DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 58/297 (19%), Positives = 92/297 (30%), Gaps = 36/297 (12%)

Query: 364 LMQNNTKLEVLRLSNNSFSGILQLPKVKHDL-LRHLDISNNNLTGMLPQNMGIVIQ--KL 420
           L      LE L    ++ + + Q   +   L L+ L +    +   +      V+    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 421 MYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY 480
             + +      G  P  + E     L  L+    S                   + + + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-----------------ATRDAWL 140

Query: 481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI----G 536
             +         L+ L +   H        +     L  LD+S+N   G           
Sbjct: 141 AELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 537 NFSYLDVLLMSKNHLE---GNIPVQINNFRQLQLLDLSENRLFGSIASS--LNLSSIMHL 591
            F  L VL +    +E   G          QLQ LDLS N L  +  +      S +  L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 592 YLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648
            L    L  Q+P  L     L  LDL  N+   R P   +   ++  L L+GN    
Sbjct: 259 NLSFTGLK-QVPKGLPAK--LSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 51/329 (15%), Positives = 88/329 (26%), Gaps = 62/329 (18%)

Query: 213 GSVESKGICELKNLTELDLGENNLEGQLPWC-LSDLIGLKVLDISFNHLSGNLPSVIA-- 269
           G+ + +     ++L  L    +       +  +   + LK L +    +   +       
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 270 -NLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL 328
             ++ L+ L L +    G  P  LL                             L +L L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGP-----------------------DLNILNL 128

Query: 329 PNCNLKVIPSFLLHQYDFKFLDLSSNKLVGN----FPTWLMQNNTKLEVLRLSNNSFSGI 384
            N +     ++L     +    L    +       F    ++    L  L LS+N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 385 LQLP----KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE 440
             L      +K   L+ L + N  +                          G        
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGM----------------------ETPSGVCSALAAA 226

Query: 441 MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN 500
             +L  LDLS N       A S    + L  L++S         P  +   +L  L L  
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPKGL-PAKLSVLDLSY 283

Query: 501 NHFTGKIKAGLLNSHGLVVLDISNNLLSG 529
           N          L    +  L +  N    
Sbjct: 284 NRLDRNPSPDELPQ--VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 6e-14
 Identities = 32/150 (21%), Positives = 47/150 (31%), Gaps = 8/150 (5%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFN---DSVLPY 121
            +      F  L  LDLS N   G               L++L L               
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
                 L  L+L +N +     +        L +LNLS+ G+      +  G    L VL
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ----VPKGLPAKLSVL 279

Query: 182 DLSANRISGSLTELAPFRNLKVLGMRNNLL 211
           DLS NR+            +  L ++ N  
Sbjct: 280 DLSYNRLD-RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 45/259 (17%), Positives = 74/259 (28%), Gaps = 49/259 (18%)

Query: 536 GNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN----RLFGSIASSLNLSSIMHL 591
           G  S   +L       +      I     L+ L +       R+       L +S +  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 592 YLQNNALSGQIPSTLFRST--ELLTLDLRDNKFFGRIPD----QINNHSELRVLLLRGNY 645
            L+N  ++G  P  L  +T  +L  L+LR+  +  R       Q      L+VL +   +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 646 LQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGL 705
                   +     L  LDLS N   G                       L         
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG--------------------LISALCPLKF 200

Query: 706 HSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTG 765
            ++         +         L                     L     +DLS+N L  
Sbjct: 201 PTLQVLALRNAGMETPSGVCSAL---------------AAARVQLQG---LDLSHNSLRD 242

Query: 766 EIPSEIGELP-KVRALNLS 783
              +   + P ++ +LNLS
Sbjct: 243 AAGAPSCDWPSQLNSLNLS 261

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 70/352 (19%), Positives = 116/352 (32%), Gaps = 63/352 (17%)

Query: 100 SSKKLKILNLNYNNFNDSVLPYL-----NTLTSLTTLNLYYNRI---GGLNPSQGLA-NL 150
               +  L+L+ NN        L     NT  S+T+LNL  N +         Q LA   
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 151 RNLKALNLSWNGIS-SGATRLGLG---NLTNLEVLDLSANRISGSLTE------LAPFRN 200
            N+ +LNLS N +S   +  L          + VLDL  N  S   +            +
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 201 LKVLGMRNNLLNGSVESKGICEL-----KNLTELDLGENNLEGQLPWCLSDLI-----GL 250
           +  L +R N L G   S  + ++      N+  L+L  NNL  +    L+  +      +
Sbjct: 140 ITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 251 KVLDISFNHLSGNLPSVIA-----NLTSLEYLALSDNNFQGEFPLSL---LTNHSNLEVL 302
             LD+S N L     + +A         +  L L  N   G    +L     +  +L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 303 LLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL----VG 358
                  L       +   Q K L     N++ I            +D +  ++      
Sbjct: 259 ------YLDYDIVKNMSKEQCKALGAAFPNIQKI----------ILVDKNGKEIHPSHSI 302

Query: 359 NFPTWLMQNNTKLEVLRLSNNSFSGILQLP-----KVKHDLLRHLDISNNNL 405
                + + + K +V  L N       +           D LR    +   L
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 47/276 (17%)

Query: 76  LQILDLSGNYFDGWNENKDYDS-----SGSSKKLKILNLNYNNFNDSVLPYL-----NTL 125
           +  L+LSGN+       K  D      +     + +L+L +N+F+            N  
Sbjct: 82  VTSLNLSGNFL----SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 126 TSLTTLNLYYNRI---GGLNPSQGLANL-RNLKALNLSWNGISS-GATRLGLG---NLTN 177
            S+T+LNL  N +         Q LA +  N+ +LNL  N ++S     L         +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 178 LEVLDLSANRISGS-LTELA-----PFRNLKVLGMRNNLLNGSVESKGICEL----KNLT 227
           +  LDLSAN +      ELA        ++  L +  N L      + +  L    K+L 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLENLKLLKDSLKHLQ 256

Query: 228 ELDLGENNLEGQLPWCLSDLI-------GLKVLDISFNHLSGNLPSVIANL-----TSLE 275
            + L  + ++         L         + ++D +   +  +    I+NL        +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 276 YLALSDNN--FQGEFPLSLLTNHSNLEVLLLKVSSN 309
             +L +    F  +   ++   +   E+     +  
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 47/304 (15%), Positives = 97/304 (31%), Gaps = 64/304 (21%)

Query: 144 SQGLANLRNLKALNLSWNGIS-SGATRLG---LGNLTNLEVLDLSANRIS----GSLTEL 195
            +  +    + +L+LS N +       L         ++  L+LS N +       L ++
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 196 --APFRNLKVLGMRNNLLNGSVESKGICEL-----KNLTELDLGENNLEGQLPWCLSDLI 248
             A   N+  L +  N L     S  + +        +T LDLG N+   +         
Sbjct: 75  LAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 249 -----GLKVLDISFNHLSGNLPSVIANL-----TSLEYLALSDNNFQGE----FPLSLLT 294
                 +  L++  N L       +  +      ++  L L  NN   +        L +
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 295 NHSNLEVLLLKVSSN-LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS 353
             +++  L L  S+N L LK+   +      +      ++               L+L  
Sbjct: 194 IPASVTSLDL--SANLLGLKSYAEL----AYIFSSIPNHVVS-------------LNLCL 234

Query: 354 NKLVGNFPTWL---MQNNTKLEVLRLSNNSFSGILQ---------LPKVKHDLLRHLDIS 401
           N L G     L     +   L+ + L  +    + +          P ++   +  +D +
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK--IILVDKN 292

Query: 402 NNNL 405
              +
Sbjct: 293 GKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 24/160 (15%)

Query: 102 KKLKILNLNYNNFNDSVLPYL-----NTLTSLTTLNLYYNRIGGLNP---SQGLANLRNL 153
             +  L+L+ N         L     +    + +LNL  N + G +         +L++L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 154 KALNLSWNGISS----GATRLG--LGNLTNLEVLDLSANRISGSLTEL------APFRNL 201
           + + L ++ + +        LG    N+  + ++D +   I  S +              
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 202 KVLGMRNNLLNGSVESKGICELKN----LTELDLGENNLE 237
            V  + N  L  + + +   E  N    L E       L 
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 54/349 (15%), Positives = 108/349 (30%), Gaps = 66/349 (18%)

Query: 347 KFLDLSSNKL----VGNFPTWLMQNNTKLEVLRLSNNSFS-----GILQLPKVKHDLLRH 397
             LDLS N L                  +  L LS NS        ++Q+       +  
Sbjct: 25  TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84

Query: 398 LDISNNNLTGMLPQNMGIVIQ----KLMYIDISKNNFEGNIPYSIGEM-----KELFLLD 448
           L++S N L+      +   +      +  +D+  N+F         +        +  L+
Sbjct: 85  LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144

Query: 449 LSRNKFSGDLSATSVIRC-----ASLEYLDVSENNFY-------GHIFPTYMNLTQLRWL 496
           L  N   G  S+  +I+      A++  L++  NN              +      +  L
Sbjct: 145 LRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS--IPASVTSL 201

Query: 497 YLKNNHFTGK-----IKAGLLNSHGLVVLDISNNLLSG----HIPCWIGNFSYLDVLLMS 547
            L  N    K             + +V L++  N L G    ++     +  +L  + + 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 548 KNHLEGNIPVQ--------INNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNAL 598
            + +  N+  +          N +++ L+D +   +  S +  + NL   +       +L
Sbjct: 262 YDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSL 320

Query: 599 SGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
             Q    +F       ++              N   ELR  +     L 
Sbjct: 321 LNQ--CLIFAQKHQTNIEDL------------NIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 54/336 (16%), Positives = 96/336 (28%), Gaps = 85/336 (25%)

Query: 364 LMQNNTKLEVLRLSNNSFS-----GILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ 418
                  +  L LS N+        ++Q        +  L++S N+L       +  ++ 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD----LSATSVIRCASLEYLDV 474
                                    +  L+LS N  S      L  T      ++  LD+
Sbjct: 77  A--------IP------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 475 SENNFYG----HIFPTYMNL-TQLRWLYLKNNHFTGK----IKAGLLNSH-GLVVLDISN 524
             N+F           + NL   +  L L+ N    K    +   L      +  L++  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL----FGSIA 580
           N L     C     + L   L S                 +  LDLS N L    +  +A
Sbjct: 177 NNL-ASKNC-----AELAKFLASIP-------------ASVTSLDLSANLLGLKSYAELA 217

Query: 581 SSL--NLSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634
                  + ++ L L  N L G     +         L T+ L  +       +Q     
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

Query: 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
                             A   +QK+ ++D +  ++
Sbjct: 278 A-----------------AFPNIQKIILVDKNGKEI 296

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
              T L+L  N +   + +  L     L  LNL    ++        G L  L  LDLS 
Sbjct: 31  KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSH 86

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
           N++            L VL +  N L  S+    +  L  L EL L  N L+   P  L+
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ----GEFPLSLLTN 295
               L+ L ++ N+L+     ++  L +L+ L L +N+      G F   LL  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/212 (24%), Positives = 70/212 (33%), Gaps = 44/212 (20%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
             IL LS N            +     +L  LNL+      + L    TL  L TL+L +
Sbjct: 33  TTILHLSENLL----YTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSH 86

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLDLSANRISGSL 192
           N++  L        L  L  L++S+N ++S   GA    L  L  L+ L L  N     L
Sbjct: 87  NQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNE----L 136

Query: 193 TELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGL 250
             L P                              L +L L  NNL       L+ L  L
Sbjct: 137 KTLPPGLLTP----------------------TPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 251 KVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
             L +  N L   +P        L +  L  N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL-N 123
            + +  +P+  L  L+L         E       G+   L  L+L++N      LP L  
Sbjct: 46  FSLATLMPYTRLTQLNLDR------AELTKLQVDGTLPVLGTLDLSHNQL--QSLPLLGQ 97

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
           TL +LT L++ +NR+  L P   L  L  L+ L L  N + +    L L     LE L L
Sbjct: 98  TLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSL 155

Query: 184 SANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ 239
           + N ++    G L  L    NL  L ++ N L  ++  KG      L    L  N     
Sbjct: 156 ANNNLTELPAGLLNGLE---NLDTLLLQENSLY-TI-PKGFFGSHLLPFAFLHGN----- 205

Query: 240 LPW-CLSDLIGLK 251
            PW C  +++  +
Sbjct: 206 -PWLCNCEILYFR 217

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 45/180 (25%), Positives = 68/180 (37%), Gaps = 16/180 (8%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGK 506
           L LS N      S  +++    L  L++               L  L  L L +N     
Sbjct: 36  LHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 507 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF---SYLDVLLMSKNHLEGNIPVQI-NNF 562
           +         L VLD+S N L+  +P  +G       L  L +  N L+  +P  +    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 563 RQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
            +L+ L L+ N L   + + L   L ++  L LQ N+L   IP   F S  L    L  N
Sbjct: 148 PKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 54/236 (22%), Positives = 80/236 (33%), Gaps = 44/236 (18%)

Query: 174 NLTNLEVLDLSANRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
            + +   ++         LT L P   ++  +L +  NLL  +     +     LT+L+L
Sbjct: 8   KVASHLEVNCDKRN----LTALPPDLPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNL 62

Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
               L  +L      L  L  LD+S N L  +LP +   L +L  L +S N      PL 
Sbjct: 63  DRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
            L     L+ L L    N            +LK L          P  L      + L L
Sbjct: 119 ALRGLGELQELYL--KGN------------ELKTLP---------PGLLTPTPKLEKLSL 155

Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS----GILQLPKVKHDLLRHLDISNN 403
           ++N L    P  L+     L+ L L  NS      G           L    +  N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-----LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNA 597
                +L +S+N L       +  + +L  L+L    L   +     L  +  L L +N 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQ 88

Query: 598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQGQIPIALCQ 656
           L   +P        L  LD+  N+    +P        EL+ L L+GN L+   P  L  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 657 LQKLGILDLSHNKLNGSIPS 676
             KL  L L++N L   +P+
Sbjct: 147 TPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578
           +L +S NLL       +  ++ L  L + +  L   + V       L  LDLS N+L  S
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL-QS 91

Query: 579 IASSL-NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI-NNHSE 635
           +      L ++  L +  N L+  +P    R   EL  L L+ N+    +P  +     +
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPK 149

Query: 636 LRVLLLRGNYLQGQIPI-ALCQLQKLGILDLSHNKLNGSIP 675
           L  L L  N L  ++P   L  L+ L  L L  N L  +IP
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 565 LQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG 624
              ++  +  L  ++   L       L+L  N L     +TL   T L  L+L   +   
Sbjct: 12  HLEVNCDKRNL-TALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-- 67

Query: 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
                      L  L L  N LQ  +P+    L  L +LD+S N+L  S+P 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
               +L LS N                 L  L++    LT  L  +  +    L  +D+S
Sbjct: 31  KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELT-KLQVDGTLP--VLGTLDLS 85

Query: 427 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP- 485
            N  + ++P     +  L +LD+S N+ +  L   ++     L+ L +  N       P 
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL--KTLPP 141

Query: 486 -TYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLS 528
                  +L  L L NN+ T ++ AGLLN    L  L +  N L 
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.8 bits (179), Expect = 9e-15
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 24/188 (12%)

Query: 91  ENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANL 150
           E +    +  ++K++ L+         +   L+TL +   L L  N I  +     L+ +
Sbjct: 15  EERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI---SSLSGM 69

Query: 151 RNLKALNLSWNGISSGATRLGLGNLTN-LEVLDLSANRISGSLTELAPFRNLKVLGMRNN 209
            NL+ L+L  N I        L  + + LE L +S N+I+ SL+ +    NL+VL M NN
Sbjct: 70  ENLRILSLGRNLIKKIE---NLDAVADTLEELWISYNQIA-SLSGIEKLVNLRVLYMSNN 125

Query: 210 LLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA 269
            +    E   +  L  L +L L  N L                     N  S     V+ 
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK--------------ENNATSEYRIEVVK 171

Query: 270 NLTSLEYL 277
            L +L+ L
Sbjct: 172 RLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 36/174 (20%), Positives = 53/174 (30%), Gaps = 56/174 (32%)

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG 190
           L+     I  ++    L+ L+  K L LS N I   +    L  + NL +L L  N I  
Sbjct: 30  LHGMIPPIEKMD--ATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLI-- 82

Query: 191 SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGL 250
              ++     +                        L EL +  N +              
Sbjct: 83  --KKIENLDAV---------------------ADTLEELWISYNQIA------------- 106

Query: 251 KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
                    LSG     I  L +L  L +S+N       +  L     LE LLL
Sbjct: 107 --------SLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 74  QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNL 133
           + L+IL L  N           +    +  L+ L ++YN      L  +  L +L  L +
Sbjct: 70  ENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYM 122

Query: 134 YYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLG---------LGNLTNLEVLD 182
             N+I        LA L  L+ L L+ N + +               +  L NL+ LD
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIP 603
           L      +E  +   ++  +  + L LS N +   I+S   + ++  L L  N +  +I 
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIK-KIE 86

Query: 604 STLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGI 662
           +    +  L  L +  N+        I     LRVL +  N +     I  L  L KL  
Sbjct: 87  NLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144

Query: 663 LDLSHNKL 670
           L L+ N L
Sbjct: 145 LLLAGNPL 152

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 20/188 (10%)

Query: 104 LKILNLNYNNFNDSVLPY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
            K L+L  N    S LP    + LT L  L L  N++  L P+     L+NL+ L ++ N
Sbjct: 39  TKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN 95

Query: 162 GISS---GATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGS 214
            + +   G        L NL  L L  N++          L     L  L +  N L  S
Sbjct: 96  KLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDSLT---KLTYLSLGYNELQ-S 147

Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSL 274
           +      +L +L EL L  N L+         L  LK L +  N L         +L  L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 275 EYLALSDN 282
           + L L +N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 50/186 (26%), Positives = 74/186 (39%), Gaps = 17/186 (9%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
                L+L  N++  L PS+    L  L+ L L+ N + +   G        L NLE L 
Sbjct: 37  ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLW 91

Query: 183 LSANRI----SGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG 238
           ++ N++     G   +L    NL  L +  N L  S+  +    L  LT L LG N L+ 
Sbjct: 92  VTDNKLQALPIGVFDQLV---NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS 147

Query: 239 QLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSN 298
                   L  LK L +  N L          LT L+ L L +N  +   P     +   
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206

Query: 299 LEVLLL 304
           L++L L
Sbjct: 207 LKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFG 577
            LD+ +N LS          + L +L ++ N L+  +P  I    + L+ L +++N+L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-Q 98

Query: 578 SIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQI-NNH 633
           ++   +   L ++  L L  N L   +P  +F S T+L  L L  N+    +P  + +  
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKL 156

Query: 634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
           + L+ L L  N L+     A  +L +L  L L +N+L   +P
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
           +  +LDL  N L          L  L++L ++ N L      +   L +LE L ++DN  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIP--TF----QLKVLQLPNCNLKVIPS 338
           Q   P+ +     NL  L L    N +LK+   +P   F    +L  L L    L+ +P 
Sbjct: 98  Q-ALPIGVFDQLVNLAELRL--DRN-QLKS---LPPRVFDSLTKLTYLSLGYNELQSLPK 150

Query: 339 FLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRH 397
            +  +    K L L +N+L    P       T+L+ L+L NN    + +      + L+ 
Sbjct: 151 GVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 398 LDISNN 403
           L +  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP--TYMNLTQLRWLYLKNNHFT 504
           LDL  NK S  L + +  R   L  L +++N       P   +  L  L  L++ +N   
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 505 GKIKAGLLNS-HGLVVLDISNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQI-NN 561
             +  G+ +    L  L +  N L   +P  +  + + L  L +  N L+ ++P  + + 
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155

Query: 562 FRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLR 618
              L+ L L  N+L   +       L+ +  L L NN L  ++P   F S  +L  L L+
Sbjct: 156 LTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQ 213

Query: 619 DN 620
           +N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 103 KLKILNLNYNNFNDSVLPY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160
            L  L L+ N      LP    ++LT LT L+L YN +  L P      L +LK L L  
Sbjct: 110 NLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYN 166

Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVL 204
           N +           LT L+ L L  N++   + E A F +L+ L
Sbjct: 167 NQLKRVPEGA-FDKLTELKTLKLDNNQLK-RVPEGA-FDSLEKL 207

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 14/127 (11%)

Query: 554 NIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-T 610
           NIP         + LDL  N+L  S+ S     L+ +  LYL +N L   +P+ +F+   
Sbjct: 34  NIPAD------TKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85

Query: 611 ELLTLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK 669
            L TL + DNK    +P  + +    L  L L  N L+   P     L KL  L L +N+
Sbjct: 86  NLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 670 LNGSIPS 676
           L  S+P 
Sbjct: 145 LQ-SLPK 150

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 39/237 (16%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 104 LKILNLNYNNFNDSVLPY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS-W 160
              L          V+     +    L  + +  N +  +  +   +NL  L  + +   
Sbjct: 32  AIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELA--PFRNLKVLGMRNNLLNGSVESK 218
           N +          NL NL+ L +S   I   L ++         +L +++N+   ++E  
Sbjct: 90  NNLLYINPEA-FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 219 GICEL-KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYL 277
               L      L L +N ++       +     ++     N+L      V    +    L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 278 ALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF----QLKVLQLPN 330
            +S        P   L N   L        S   LK    +PT      L    L  
Sbjct: 208 DISRTRIH-SLPSYGLENLKKLRAR-----STYNLKK---LPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 19/226 (8%)

Query: 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182
           +   +   L     ++  +      +   +L+ + +S N +          NL  L  + 
Sbjct: 27  DLPRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 183 LS-ANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN-- 235
           +  AN +      +   L    NL+ L + N  +   +             LD+ +N   
Sbjct: 86  IEKANNLLYINPEAFQNL---PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINI 141

Query: 236 --LEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
             +E      LS      +L ++ N +   + +   N T L+ L LSDNN   E P  + 
Sbjct: 142 HTIERNSFVGLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 294 TNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
              S   +L +  +    L +       +L+       NLK +P+ 
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 4/226 (1%)

Query: 249 GLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
               L      L        +    LE + +S N+        + +N   L  + ++ ++
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 309 NLR-LKTENWIPTFQLKVLQLPNCNLKVIPSFL-LHQYDFKFLDLSSNKLVGNFPTWLMQ 366
           NL  +  E +     L+ L + N  +K +P    +H      LD+  N  +         
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 367 N-NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI 425
             + +  +L L+ N    I         L       NNNL   LP ++       + +DI
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDI 209

Query: 426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEY 471
           S+        Y +  +K+L        K    L     +  ASL Y
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 33/262 (12%)

Query: 349 LDLSSNKLV---GNFPTWLMQNNTKLEVLRLSNNSFSGI-----LQLPKVKHDLLRHLDI 400
                +K+     + P            LR        I               L  ++I
Sbjct: 14  FLCQESKVTEIPSDLPRNA-------IELRFVLTKLRVIQKGAFSGFGD-----LEKIEI 61

Query: 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI-GEMKELFLLDLSRNKFSGDLS 459
           S N++  ++  ++   + KL  I I K N    I       +  L  L +S       L 
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLP 120

Query: 460 ATSVIRCASLEYLDVSENNFYGHIFP-TYMNLT-QLRWLYLKNNHFTGKIKAGLLNSHGL 517
               I       LD+ +N     I   +++ L+ +   L+L  N    +I     N   L
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQL 179

Query: 518 VVLDIS-NNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENR 574
             L++S NN L   +P  +    S   +L +S+  +  ++P     N ++L+       +
Sbjct: 180 DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

Query: 575 LFGSIASSLNLSSIMHLYLQNN 596
              ++     L ++M   L   
Sbjct: 238 KLPTLE---KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 9/188 (4%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISN-NLLSGHIPCWI-GNFSYLDVLL 545
               L  + +  N     I+A + ++   L  + I   N L  +I      N   L  LL
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL 110

Query: 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMH-LYLQNNALSGQI 602
           +S   ++    V   +  Q  LLD+ +N    +I  +    LS     L+L  N +  +I
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169

Query: 603 PSTLFRSTELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661
            ++ F  T+L  L+L DN     +P+ + +  S   +L +    +       L  L+KL 
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229

Query: 662 ILDLSHNK 669
                + K
Sbjct: 230 ARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 42/284 (14%), Positives = 89/284 (31%), Gaps = 17/284 (5%)

Query: 70  FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLP--YLNTLTS 127
           F  F +L+ +++S N      E   + +     +++I   N    N   +       L +
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN----NLLYINPEAFQNLPN 105

Query: 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNG-ISSGATRLGLGNLTNLEVLDLSAN 186
           L  L +    I  L P     +      L++  N  I +      +G      +L L+ N
Sbjct: 106 LQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 187 RISGSLTELA--PFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244
            I   +   A    +  ++    NN L   + +           LD+    +     + L
Sbjct: 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 245 SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            +L  L+       +L   LP+ +  L +L   +L+          +     S L  +  
Sbjct: 223 ENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSHCCAFANWRRQISELHPICN 277

Query: 305 KVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKF 348
           K      +         +  + +    +          ++D+  
Sbjct: 278 KSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDL 321

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 7/172 (4%)

Query: 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENR 574
             + L      L          F  L+ + +S+N +   I   + +N  +L  + + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 575 LFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKFFGRIPDQI- 630
               I      NL ++ +L + N  +   +P      S + + LD++DN     I     
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 631 -NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
                E  +L L  N +Q     A    Q   +    +N L       F   
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 27/141 (19%), Positives = 41/141 (29%), Gaps = 7/141 (4%)

Query: 69  LFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSL 128
             +   +  +LD+  N      E   +   G S +  IL LN N   +      N     
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 129 TTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRI 188
                  N +  L P+           L++S   I S  +  GL NL  L        + 
Sbjct: 181 ELNLSDNNNLEEL-PNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTYNLK- 237

Query: 189 SGSLTELAPFRNLKVLGMRNN 209
              L  L     L    +   
Sbjct: 238 --KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 69  LFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSL 128
            F     LQ L +S        ++        S +  +L++  N    ++    N+   L
Sbjct: 99  AFQNLPNLQYLLISNTGI----KHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGL 152

Query: 129 T----TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           +     L L  N I  +  +      +  +      N +      +     +   +LD+S
Sbjct: 153 SFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDIS 210

Query: 185 ANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
             RI  SL       NLK L  R+      + +  + +L  L E  L
Sbjct: 211 RTRIH-SLPSYG-LENLKKLRARSTYNLKKLPT--LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 568 LDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRI 626
               E+++   I S L   + + L      L   I    F    +L  +++  N     I
Sbjct: 14  FLCQESKV-TEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 627 PDQI-NNHSELRVL-LLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
              + +N  +L  + + + N L    P A   L  L  L +S+  +   +P 
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNG----ISSGATRLGLGNLTNLEV 180
             S  TL L    +  + PS   +NL N+  + +S +     + S +      NL+ +  
Sbjct: 30  PPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTH 84

Query: 181 LDLSANRISGSLTELAP--FR---NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235
           +++   R   +LT + P   +    LK LG+ N  L    +   +        L++ +N 
Sbjct: 85  IEIRNTR---NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 236 LEGQLP-WCLSDLIG-LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
               +P      L      L +  N  + ++     N T L+ + L+ N +         
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 294 TN-HSNLEVLLL 304
              +S   +L +
Sbjct: 201 GGVYSGPSLLDV 212

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 32/228 (14%)

Query: 447 LDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTG 505
           L L        + + +     ++  + VS +     +   ++ NL+++  + ++N     
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 506 KIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 564
            I    L     L  L I N  L    P                          + +   
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLK-MFPDLTK----------------------VYSTDI 131

Query: 565 LQLLDLSENRLFGSIASSL--NLSS-IMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK 621
             +L++++N    SI  +    L +  + L L NN  +  +    F  T+L  + L  NK
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190

Query: 622 FFGRIPDQI--NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSH 667
           +   I        +S   +L +    +       L  L++L   +   
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 14/191 (7%)

Query: 102 KKLKILNLNYNNFNDSVLPYL-NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160
             +  + ++ +     +  +    L+ +T + +   R         L  L  LK L +  
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNL----KVLGMRNNLLNGSVE 216
            G+        + +     +L+++ N    S+   A F+ L      L + NN    SV+
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNNGFT-SVQ 172

Query: 217 SKGICELKNLTELDLGENNLEGQLP-WCLSDLI-GLKVLDISFNHLSGNLPSVIANLTSL 274
                    L  + L +N     +       +  G  +LD+S   ++  LPS    L  L
Sbjct: 173 G-YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHL 228

Query: 275 EYLALSDNNFQ 285
           + L ++ N + 
Sbjct: 229 KEL-IARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 565 LQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNK 621
            Q L L E  L  +I S    NL +I  +Y+  +    Q+ S  F + +++  +++R+ +
Sbjct: 33  TQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 622 FFGRIPDQI-NNHSELRVLLLRGNYLQGQIP--IALCQLQKLGILDLSHNKLNGSIPS 676
               I          L+ L +    L+   P    +       IL+++ N    SIP 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 40/287 (13%), Positives = 91/287 (31%), Gaps = 58/287 (20%)

Query: 219 GICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLA 278
             CE     +  +   +++ ++P   S     + L +   HL        +NL ++  + 
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPS 338
           +S +    +       N S +  +                                    
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHI------------------------------------ 85

Query: 339 FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH-DLLRH 397
                      ++ + + +       ++    L+ L + N        L KV   D+   
Sbjct: 86  -----------EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134

Query: 398 LDISNNNLTGMLPQNM-GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 456
           L+I++N     +P N    +  + + + +  N F  ++        +L  + L++NK+  
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 457 DLSATSVIRCAS-LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH 502
            +   +     S    LDVS+ +      P+   L  L+ L  +N  
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSV--TALPSKG-LEHLKELIARNTW 237

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 57/311 (18%), Positives = 99/311 (31%), Gaps = 30/311 (9%)

Query: 22  DGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDL 81
           D      +W           V    L  A + D         I   S       L     
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338

Query: 82  SGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGL 141
                D   + + +    S +K  +L     +  +           L T+ L    +  L
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 398

Query: 142 -NPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN 200
               + L     LKA++                        DL +  +  +      + +
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLD----------------DLRSKFLLENSVLKMEYAD 442

Query: 201 LKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL 260
           ++VL + +  L        + +L  +T LDL  N L   LP  L+ L  L+VL  S N L
Sbjct: 443 VRVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 261 SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLK-----VSSNLRLKTE 315
             N+   +ANL  L+ L L +N  Q    +  L +   L +L L+         ++ +  
Sbjct: 499 E-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556

Query: 316 NWIPTFQLKVL 326
             +P   +  +
Sbjct: 557 EMLP--SVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 39/207 (18%), Positives = 66/207 (31%), Gaps = 15/207 (7%)

Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527
            L   ++S       +     +  +L+ L  +N      I   +     L+    +    
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 528 S---GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584
           S      P               ++       V    +  +++L L+   L   +     
Sbjct: 409 STLKAVDPMRAAYLDD------LRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQ 461

Query: 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           L  + HL L +N L   +P  L     L  L   DN     +   + N   L+ LLL  N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNN 518

Query: 645 YLQG-QIPIALCQLQKLGILDLSHNKL 670
            LQ       L    +L +L+L  N L
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 46/240 (19%), Positives = 76/240 (31%), Gaps = 43/240 (17%)

Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNN--LLNGSVESKGICELKNLTEL 229
                 L   +LS  + +   +EL   + L+ L   N   LL   +  + +  L    E 
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
               + L+        D +    LD   +        +      +  L L+  +      
Sbjct: 405 LQYFSTLKA------VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD------ 452

Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
              LT   +LE LL                   +  L L +  L+ +P  L      + L
Sbjct: 453 ---LTVLCHLEQLL------------------LVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNN---SFSGILQLPKVKHDLLRHLDISNNNLT 406
             S N L  N     + N  +L+ L L NN     + I  L       L  L++  N+L 
Sbjct: 492 QASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPR--LVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 38/273 (13%), Positives = 74/273 (27%), Gaps = 37/273 (13%)

Query: 233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
            + L       +      +   +             A    L    LS    +     S 
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE--KSTVLQSE 367

Query: 293 LTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLS 352
           L +   L+ L  +  +   L T   +    L  L      L+   +              
Sbjct: 368 LESCKELQELEPE--NKWCLLTIILLMR-ALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424

Query: 353 SNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQN 412
                    + L      + VL L++   + +  L ++    + HLD+S+N L       
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--VTHLDLSHNRLR------ 476

Query: 413 MGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYL 472
                                +P ++  ++ L +L  S N      +   V     L+ L
Sbjct: 477 --------------------ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQEL 513

Query: 473 DVSENNFYGH-IFPTYMNLTQLRWLYLKNNHFT 504
            +  N           ++  +L  L L+ N   
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 29/272 (10%), Positives = 74/272 (27%), Gaps = 15/272 (5%)

Query: 407 GMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL-------- 458
            +L +     +   +++   +          +     +  L L  ++    +        
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 459 SATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV 518
           +  S +    L    +++          +      +   L  +      +        L 
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLF 352

Query: 519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578
             ++S    +  +   + +   L  L          I + +     L     +      S
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--S 409

Query: 579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRV 638
              +++     +L    +    +         ++  L L        +   +     +  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTH 467

Query: 639 LLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
           L L  N L+  +P AL  L+ L +L  S N L
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 106 ILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL-ANLRNLKALNLSWNGIS 164
           ++ L       +             L+L   +I  +   + L A L    A++ S N I 
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIR 55

Query: 165 SGATRLGLGNLTNLEVLDLSANRISGSLTELAP-FRNLKVLGMRNNLLNGSVESKGICEL 223
                 G   L  L+ L ++ NRI      L     +L  L + NN L    +   +  L
Sbjct: 56  KLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 224 KNLTELDLGEN---NLEGQLPWCLSDLIGLKVLD 254
           K+LT L +  N   N +    + +  +  ++VLD
Sbjct: 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 39/153 (25%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLG-NLTNLEVLDLSANRIS 189
           + L    I     +    N    + L+L    I        LG  L   + +D S N I 
Sbjct: 2   VKLTAELI---EQAAQYTNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEIR 55

Query: 190 GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE--GQLPWCLSDL 247
             L      R LK L + NN +   +       L +LTEL L  N+L   G L   L+ L
Sbjct: 56  -KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDL-DPLASL 112

Query: 248 IGLKVLDISFN---HLSGNLPSVIANLTSLEYL 277
             L  L I  N   +       VI  +  +  L
Sbjct: 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 75  ELQILDLSGNY---FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTL 131
             + LDL G      +      D        +   ++ + N      L     L  L TL
Sbjct: 20  RDRELDLRGYKIPVIENLGATLD--------QFDAIDFSDNEI--RKLDGFPLLRRLKTL 69

Query: 132 NLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            +  NRI  +        L +L  L L+ N +        L +L +L  L +  N ++
Sbjct: 70  LVNNNRICRIGEGL-DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 37/176 (21%)

Query: 156 LNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSV 215
           + L+   I          N      LDL   +I           NL              
Sbjct: 2   VKLTAELIE---QAAQYTNAVRDRELDLRGYKIP-------VIENLGAT----------- 40

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLE 275
                  L     +D  +N +  +L      L  LK L ++ N +      +   L  L 
Sbjct: 41  -------LDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91

Query: 276 YLALSDNNFQGEFPLSLLTNHSNLEVLLLK-----VSSNLRLKTENWIPTFQLKVL 326
            L L++N+      L  L +  +L  L +         + RL     +P  Q++VL
Sbjct: 92  ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP--QVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 304 LKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL--VGNFP 361
           +K+++ L  +   +    + + L L    + VI +       F  +D S N++  +  FP
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 362 TWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
                   +L+ L ++NN    I +        L  L ++NN+L 
Sbjct: 62  -----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 69  LFLPFQELQILDLSGNY---FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTL 125
           L     +   +D S N     DG+   +         +LK L +N N            L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKLDGFPLLR---------RLKTLLVNNNRICRIGEGLDQAL 87

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGAT-RLG-LGNLTNLEVLD 182
             LT L L  N +  L     LA+L++L  L +  N +++    RL  +  +  + VLD
Sbjct: 88  PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LDV 543
           Y N  + R L L+       I+           +D S+N +       +  F     L  
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRLKT 68

Query: 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASSLNLSSIMHLYLQNN 596
           LL++ N +             L  L L+ N L   G +    +L S+ +L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
           T + +  L L  +R               L+ L+    G++S A    L  L  L+ L+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLEL 71

Query: 184 SANRISGSLTELAP-FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN---NLEGQ 239
           S NR+SG L  LA    NL  L +  N +      + + +L+NL  LDL      NL   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 240 LPWCLSDLIGLKVLD 254
                  L  L  LD
Sbjct: 132 RENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 141 LNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN 200
           ++         ++K L L  +  + G           LE L      ++ S+  L     
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNK 65

Query: 201 LKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW-CLSDLIGLKVLDISFN- 258
           LK L + +N ++         +  NLT L+L  N ++       L  L  LK LD+    
Sbjct: 66  LKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 259 --HLSGNLPSVIANLTSLEYL 277
             +L+    +V   L  L YL
Sbjct: 125 VTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
            RI   L    P  ++K L + N+  N         E + L  L      L   +   L 
Sbjct: 5   RRIHLELRNRTP-SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLP 61

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L  LK L++S N +SG L  +     +L +L LS N  +    +  L    NL+ L L
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 69  LFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSL 128
           L   F+EL+ L                 +     KLK L L+ N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 129 TTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
           T LNL  N+I  L+  + L  L NLK+L+L    ++
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 295 NHSNLEVLLLKVSSNLRLKTENWIPTF-QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS 353
             S+++ L+L  S +   K E     F +L+ L   N  L  I + L      K L+LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 354 NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH-DLLRHLDISNNNLT 406
           N++ G     L +    L  L LS N    +  +  +K  + L+ LD+ N  +T
Sbjct: 74  NRVSGGLE-VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 489 NLTQLRWLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LDVL 544
             + ++ L L N+    GK++        L  L   N  L+      I N      L  L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASSLNLSSIMHLYLQNN 596
            +S N + G + V       L  L+LS N++    +I     L ++  L L N 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 33/165 (20%), Positives = 53/165 (32%), Gaps = 35/165 (21%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGNLTNLEVLD 182
                L L  N    L  +     L  L+ +N S N I+    GA        + +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASGVNEIL 87

Query: 183 LSANRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240
           L++NR    L  +    F+                       L++L  L L  N +    
Sbjct: 88  LTSNR----LENVQHKMFKG----------------------LESLKTLMLRSNRITCVG 121

Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
                 L  +++L +  N ++   P     L SL  L L  N F 
Sbjct: 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 24/129 (18%)

Query: 176 TNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235
                L L+ N  +  L     F+ L                        L +++   N 
Sbjct: 32  QYTAELRLNNNEFT-VLEATGIFKKLP----------------------QLRKINFSNNK 68

Query: 236 LEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTN 295
           +            G+  + ++ N L      +   L SL+ L L  N             
Sbjct: 69  ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIG 127

Query: 296 HSNLEVLLL 304
            S++ +L L
Sbjct: 128 LSSVRLLSL 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 467 ASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDIS 523
                L ++ N F   +  T +   L QLR +   NN  T  I+ G      G+  + ++
Sbjct: 32  QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 524 NNLLSGHIPCWIGNFSY---LDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSI 579
           +N L   +      F     L  L++  N +   +          ++LL L +N++  ++
Sbjct: 90  SNRLEN-VQ--HKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTV 144

Query: 580 ASSL--NLSSIMHLYLQNNAL 598
           A      L S+  L L  N  
Sbjct: 145 APGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 32/132 (24%)

Query: 68  SLFLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVL 119
            +F    +L+ ++ S N         F+G            +  +  + L  N      +
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEGAFEG------------ASGVNEILLTSNRL--ENV 96

Query: 120 PY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS---GATRLGLGN 174
            +     L SL TL L  NRI  +  +     L +++ L+L  N I++   GA       
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGA----FDT 151

Query: 175 LTNLEVLDLSAN 186
           L +L  L+L AN
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 496 LYLKNNHFTG-KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF---SYLDVLLMSKNHL 551
           L L NN FT  +          L  ++ SNN ++  I    G F   S ++ +L++ N L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIE--EGAFEGASGVNEILLTSNRL 93

Query: 552 EGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFR 608
           E N+  ++      L+ L L  NR+   + +     LSS+  L L +N ++  +    F 
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150

Query: 609 S-TELLTLDLRDN 620
           +   L TL+L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 566 QLLDLSENRL--FGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKF 622
             L L+ N      +      L  +  +   NN ++  I    F   + +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 623 FGRIPDQI-NNHSELRVLLLRGNYLQGQIPI-ALCQLQKLGILDLSHNKLNGSIP 675
              +  ++      L+ L+LR N +   +   +   L  + +L L  N++  ++ 
Sbjct: 94  -ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 124 TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDL 183
           T  ++  L L   +          A   NL+ L+L   G+ S +    L  L  L+ L+L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS---NLPKLPKLKKLEL 78

Query: 184 SANRISGSLTELAP-FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN---NLEGQ 239
           S NRI G L  LA    NL  L +  N L      + + +L+ L  LDL      NL   
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 240 LPWCLSDLIGLKVLD 254
                  L  L  LD
Sbjct: 139 RESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 141 LNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN 200
           ++          ++ L L     + G          NLE L L    +  S++ L     
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPK 72

Query: 201 LKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW-CLSDLIGLKVLDISFN- 258
           LK L +  N +          +L NLT L+L  N L+       L  L  LK LD+    
Sbjct: 73  LKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 259 --HLSGNLPSVIANLTSLEYL 277
             +L+    SV   L  L YL
Sbjct: 132 VTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              ++ L L        N+ K    +     L+ L+L         +  L  L  L  L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLE 77

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
           L  NRI G         L NL  LNLS N +   +T   L  L  L+ LDL    ++
Sbjct: 78  LSENRIFGGLDMLA-EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
            RI   L    P   ++ L + N   N         E  NL  L L    L   +   L 
Sbjct: 12  RRIHLELRNRTP-AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLP 68

Query: 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
            L  LK L++S N + G L  +   L +L +L LS N  +    L  L     L+ L L
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
           F  L+ L L               +     KLK L L+ N     +      L +LT LN
Sbjct: 48  FVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGAT-RLG-LGNLTNLEVLD 182
           L  N++  ++  + L  L  LK+L+L    +++    R      L  L  LD
Sbjct: 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 325 VLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL--VGNFPTWLMQNNTKLEVLRLSNNSFS 382
           VL     N   I        + +FL L +  L  V N P        KL+ L LS N   
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELSENRIF 84

Query: 383 GILQLPKVKHDLLRHLDISNNNLT 406
           G L +   K   L HL++S N L 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 487 YMNLTQLRWLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LD 542
                 +R L L N     GKI+        L  L + N  L       + N      L 
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPKLK 74

Query: 543 VLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASSLNLSSIMHLYLQNN 596
            L +S+N + G + +       L  L+LS N+L    ++     L  +  L L N 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 30/161 (18%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
            ++T + L  N I  + P    +  + L+ ++LS N IS  A       L +L  L L  
Sbjct: 32  ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYG 89

Query: 186 NRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC 243
           N+    +TEL    F                        L +L  L L  N +       
Sbjct: 90  NK----ITELPKSLFEG----------------------LFSLQLLLLNANKINCLRVDA 123

Query: 244 LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
             DL  L +L +  N L        + L +++ + L+ N F
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 24/175 (13%)

Query: 102 KKLKILNLNYNNFNDSVLPY--LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS 159
           KKL+ ++L+ N    S L       L SL +L LY N+I  L P      L +L+ L L+
Sbjct: 56  KKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLN 112

Query: 160 WNGISS---GATRLGLGNLTNLEVLDLSANRISGSLTE--LAPFRNLKVLGMRNNLLNGS 214
            N I+     A      +L NL +L L  N++  ++ +   +P R ++ + +  N     
Sbjct: 113 ANKINCLRVDA----FQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFICD 167

Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLS--DLIGLKVLDISFNHLSGNLPSV 267
                 C LK L +  L  N +E     C S   L   ++  I       +  + 
Sbjct: 168 ------CHLKWLADY-LHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAAAH 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 26/127 (20%)

Query: 70  FLPFQELQILDLSGNY--------FDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY 121
           F P+++L+ +DLS N         F G             + L  L L  N    + LP 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAPDAFQG------------LRSLNSLVLYGNKI--TELPK 97

Query: 122 --LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE 179
                L SL  L L  N+I  L       +L NL  L+L  N + + A       L  ++
Sbjct: 98  SLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKGT-FSPLRAIQ 155

Query: 180 VLDLSAN 186
            + L+ N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNF---SYLDVL 544
              +LR + L NN  + ++          L  L +  N ++  +P     F     L +L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELP--KSLFEGLFSLQLL 109

Query: 545 LMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNN 596
           L++ N +   + V    +   L LL L +N+L  +IA      L +I  ++L  N
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 591 LYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQG 648
           + L+ N +   IP   F    +L  +DL +N+    +          L  L+L GN +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 649 QIPIALCQLQKLGILDLSHNKLNGSIP 675
                   L  L +L L+ NK+N  + 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLR 120

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 24/131 (18%)

Query: 554 NIPVQINNFRQLQLLDLSENRLFGSIASSL------NLSSIMHLYLQNNALSGQIPSTLF 607
           N+P  I        + L +N +       +          +  + L NN +S ++    F
Sbjct: 29  NLPETI------TEIRLEQNTI-----KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAF 76

Query: 608 RS-TELLTLDLRDNKFFGRIPDQI-NNHSELRVLLLRGNYLQGQIPI-ALCQLQKLGILD 664
           +    L +L L  NK    +P  +      L++LLL  N +   + + A   L  L +L 
Sbjct: 77  QGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 665 LSHNKLNGSIP 675
           L  NKL  +I 
Sbjct: 135 LYDNKLQ-TIA 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 496 LYLKNNHFTGKIKAGLLNSHG-LVVLDISNNLLSGHIPCWIGNF---SYLDVLLMSKNHL 551
           + L+ N     I  G  + +  L  +D+SNN +S  +      F     L+ L++  N +
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELA--PDAFQGLRSLNSLVLYGNKI 92

Query: 552 EGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFR 608
              +P  +      LQLL L+ N++   +      +L ++  L L +N L      T   
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 609 STELLTLDLRDN 620
              + T+ L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNF 284
            +TE+ L +N ++   P   S    L+ +D+S N +S   P     L SL  L L  N  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIP--TF----QLKVLQLPNCNLKVIP 337
             E P SL     +L++LLL  ++N ++     +    F     L +L L +  L+ I 
Sbjct: 93  T-ELPKSLFEGLFSLQLLLL--NAN-KINC---LRVDAFQDLHNLNLLSLYDNKLQTIA 144

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.0 bits (158), Expect = 6e-11
 Identities = 83/531 (15%), Positives = 155/531 (29%), Gaps = 69/531 (12%)

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS--------------WNGISSGATRL 170
           + S T  ++         P +      NL++L L               W G  +     
Sbjct: 47  IDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE 106

Query: 171 GLGNLTNLEVLDLSANRIS-GSLTELA--PFRNLKVLGMRNNLLNGSVESKGICEL---- 223
              NL  L+ +      +S   L  LA     +L+ L +          + G+  +    
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK---CSGFTTDGLLSIVTHC 163

Query: 224 KNLTELDLGENNLEGQLPWCLSDLI----GLKVLDISFNHLSG----NLPSVIANLTSLE 275
           + +  L + E++   +    L +L      L+VL+      +     +L ++  N  SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 276 YLALSD-NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
            + + D    +         N        L     +  K  N +   +L  L L      
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 335 VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN-SFSGILQLPKVKHD 393
            +P         + LDL    L       L+Q    LEVL   N     G+  L +    
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 394 LLRHLDISNNNLTGMLPQNMGIVI-----------QKLMYIDISKNNFEGNIPYSIGE-- 440
            L+ L I        +    G+V            Q+L Y+ +  ++       SIG   
Sbjct: 344 -LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 441 --MKELFLLDLSRNKFSGDLSATSVIR-----CASLEYLDVSENNFY------GHIFPTY 487
             + +  L+ L R +   DL   + +R     C  L                  +I    
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--- 459

Query: 488 MNLTQLRWLYLKNNHFTGK-IKAGLLNSHGLVVLDISNNLLSGH-IPCWIGNFSYLDVLL 545
                +RW+ L     + + +         L  L++     S   I   +     L  L 
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 546 MSKNHL---EGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYL 593
           +          ++      +  ++L+                +    H+  
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 65/480 (13%), Positives = 142/480 (29%), Gaps = 69/480 (14%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNY-NNFNDSVLPYL-NTLTSLTT 130
            ++L+ +          + + D  +   +  L+ L L+  + F    L  +      + T
Sbjct: 111 LRQLKSVHFRRMIVS--DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 131 LNLYYNRI---GGLNPSQGLANLRNLKALNLSWNG---ISSGATRLGLGNLTNLEVLDLS 184
           L +  +      G    +   +  +L+ LN        IS         N  +L  + + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 185 ANRISGSLTELAPFRNLKVLGMR--NNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
              I   +       NL+       N  +    +   +   + L  L L        +P 
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPI 287

Query: 243 CLSDLIGLKVLDISFNHLSGN-LPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
                  ++ LD+ +  L      ++I    +LE L   +           + +      
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV----------IGDRG---- 333

Query: 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP 361
            L  ++   +          QLK L++                + +   +S   L+    
Sbjct: 334 -LEVLAQYCK----------QLKRLRIERG-------ADEQGMEDEEGLVSQRGLIA--- 372

Query: 362 TWLMQNNTKLEVLRLSNNSFS--GILQLPKVKHDL--LRHLDISNNNLTGMLPQNMGIVI 417
             L Q   +LE + +  +  +   +  +     +L   R + +        LP + G+  
Sbjct: 373 --LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 418 -----QKLMYIDISKN--NFEGNIPYSIGEM-KELFLLDLSRNKFSGDLSATSVIR-CAS 468
                +KL                   IG+    +  + L     S D       R C +
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-DEGLMEFSRGCPN 489

Query: 469 LEYLDVSENNFYGH-IFPTYMNLTQLRWLYLKNNHFT---GKIKAGLLNSHGLVVLDISN 524
           L+ L++    F    I      L  LR+L+++    +     +         + ++    
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 6e-10
 Identities = 101/644 (15%), Positives = 181/644 (28%), Gaps = 196/644 (30%)

Query: 29  DWERVTCDATAGQVIQLSLD-FARMFDFYNSSDGF-PIL-----NFSLFLPFQELQ---- 77
           D+E          ++ +  D F   FD  +  D    IL     +  +            
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 78  --ILDLSGN----YFDGWNENKDYD--SSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLT 129
              L          F       +Y    S    + +  ++    + +      N      
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
             N+  +R+      Q    LR                                      
Sbjct: 128 KYNV--SRL------QPYLKLRQ------------------------------------- 142

Query: 190 GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG-ENNLEGQLPWCLSDLI 248
            +L EL P +N+ + G+      GS    G   +     L    +  ++ ++ W      
Sbjct: 143 -ALLELRPAKNVLIDGVL-----GS----GKTWVALDVCLSYKVQCKMDFKIFW------ 186

Query: 249 GLKVLDISFNHLSGNLP-SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
                 ++  +   N P +V+  L  L Y    +   + +                   S
Sbjct: 187 ------LNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDH------------------S 220

Query: 308 SNLRLKTENWIPTFQ--LKVLQLPNC--------NLKVIPSFLLHQYDF--KFLDLSSNK 355
           SN++L+  +     +  LK     NC        N K   +F     +   K L  +  K
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFK 275

Query: 356 LVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGI 415
            V +F   L    T      +S +  S  L   +VK  LL++LD         LP+ +  
Sbjct: 276 QVTDF---LSAATTT----HISLDHHSMTLTPDEVKSLLLKYLDCR----PQDLPREV-- 322

Query: 416 VIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA---TSVIRCASLEYL 472
                  +  +        P  +  + E     L+       ++    T++I  +SL  L
Sbjct: 323 -------LTTN--------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVL 366

Query: 473 DVSEN-NFYGH--IFPTYMNLT----QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 525
           + +E    +    +FP   ++      L W  +  +     +   L     LV      +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKY-SLVEKQPKES 424

Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV------QINNFRQLQLLDLSENRLFGSI 579
            +S              + L  K  LE    +        N  +     DL    L    
Sbjct: 425 TISIP-----------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 580 ASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR--DNK 621
            S +      HL    +        TLFR    + LD R  + K
Sbjct: 474 YSHIG----HHLKNIEHPER----MTLFRM---VFLDFRFLEQK 506

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 72/473 (15%), Positives = 144/473 (30%), Gaps = 73/473 (15%)

Query: 63  PILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSS-----------KKLKILNLNY 111
            +   ++   F +++ ++L G               G               L+ + L  
Sbjct: 55  AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR 114

Query: 112 NNFNDSVLPYL-NTLTSLTTLNLYY-NRIGGLNPSQGLANLRNLKALNLSWNGISSGATR 169
               D  L  +  +  +   L L           +   A  RNLK L+L  + +   +  
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174

Query: 170 L---GLGNLTNLEVLDLS--ANRIS-GSLTELAPF-RNLKVLGMRNNLLNGSVESKGICE 222
                    T+L  L++S  A+ +S  +L  L     NLK L +   +    + +     
Sbjct: 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR- 233

Query: 223 LKNLTELDLG------ENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
              L EL  G        ++   L   LS    L+ L   ++ +   LP+V +  + L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 277 LALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF-----QLKVLQLPNC 331
           L LS    Q    + LL     L+ L +     L    +  +         L+ L++   
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWV-----LDYIEDAGLEVLASTCKDLRELRVFPS 348

Query: 332 NLKVIPSFLLHQYDFKFLDLSSNKLVGNFP-----------------TWLMQNNTKLEVL 374
                    + + +    +     +    P                   + +N   +   
Sbjct: 349 E------PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402

Query: 375 RLSNNSFSGILQLPKVKHDL-----------LRHLDISNNNLTGMLPQNMGIVIQKLMYI 423
           RL          L     D+           LR L +S   LT  + + +G   +K+  +
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEML 461

Query: 424 DISKNNFEGNIPYSIGE-MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS 475
            ++         + +      L  L++    F       +  +  ++  L +S
Sbjct: 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 47/328 (14%), Positives = 94/328 (28%), Gaps = 38/328 (11%)

Query: 100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY-----NRIGGLNPSQGLANLRNLK 154
               LK L LN     + +   L     L  L                 S  L+  + L+
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 155 ALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS--GSLTELAPFRNLKVLGMRNNLLN 212
            L+  W+              + L  L+LS   +     +  L     L+ L + + + +
Sbjct: 269 CLSGFWD-AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED 327

Query: 213 GSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLT 272
             +E       K+L EL +  +               + + +     +S   P       
Sbjct: 328 AGLEVLAST-CKDLRELRVFPSE-------PFVMEPNVALTEQGLVSVSMGCPK------ 373

Query: 273 SLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT-----------F 321
            LE +            +++  N  N+    L +            P             
Sbjct: 374 -LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 322 QLKVLQLPNC-NLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNS 380
            L+ L L      KV      +    + L ++           ++     L  L + +  
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

Query: 381 FS--GILQLPKVKHDLLRHLDISNNNLT 406
           F    +L     K + +R L +S+ +++
Sbjct: 493 FGDKALLAN-ASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 2/110 (1%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
           K L+ L+L+    +            +  L++ +     L     L+   +L+ L +   
Sbjct: 432 KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRIS-GSLTELAPFR-NLKVLGMRNN 209
                A       L  +  L +S+  +S G+   L      L V  +   
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 38/186 (20%)

Query: 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
           + L+L               LT LT LNL YN++  L  +    +L  L  L L+ N ++
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLA 96

Query: 165 SGATRLGLG---NLTNLEVLDLSANRISGSLTELAP--FRNLKVLGMRNNLLNGSVESKG 219
           S    L LG   +LT L+ L L  N+    L  L    F                     
Sbjct: 97  S----LPLGVFDHLTQLDKLYLGGNQ----LKSLPSGVFDR------------------- 129

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSD-LIGLKVLDISFNHLSGNLPSVIANLTSLEYLA 278
              L  L EL L  N L+  +P    D L  L+ L +S N L          L  L+ + 
Sbjct: 130 ---LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 279 LSDNNF 284
           L  N F
Sbjct: 186 LFGNQF 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 22/188 (11%)

Query: 103 KLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNG 162
            +  +  N ++     +  +  L ++  L L  N++  ++  + L NL     L L+ N 
Sbjct: 42  SIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY---LILTGNQ 96

Query: 163 ISS---GATRLGLGNLTNLEVLDLSANRI----SGSLTELAPFRNLKVLGMRNNLLNGSV 215
           + S   G        LTNL+ L L  N++     G   +L    NL  L + +N L  S+
Sbjct: 97  LQSLPNGVFD----KLTNLKELVLVENQLQSLPDGVFDKLT---NLTYLNLAHNQLQ-SL 148

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSD-LIGLKVLDISFNHLSGNLPSVIANLTSL 274
                 +L NLTELDL  N L+  LP  + D L  LK L +  N L      V   LTSL
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207

Query: 275 EYLALSDN 282
           +Y+ L DN
Sbjct: 208 QYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
                 NL    +           L ++  +  + + I S     G+  L N+  L L  
Sbjct: 19  AETIKANLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGG 72

Query: 186 NRISGSLTELAPFR---NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPW 242
           N+    L +++  +   NL  L +  N L  S+ +    +L NL EL L EN L+     
Sbjct: 73  NK----LHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDG 127

Query: 243 CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
               L  L  L+++ N L      V   LT+L  L LS N  Q
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
            ++    ++          + +D ++ + + ++ ++   I     ++ L L  N+L    
Sbjct: 24  ANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKL---- 75

Query: 580 ASSL----NLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNH- 633
              +     L+++ +L L  N L   +P+ +F   T L  L L +N+    +PD + +  
Sbjct: 76  -HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKL 132

Query: 634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
           + L  L L  N LQ        +L  L  LDLS+N+L  S+P 
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 57.3 bits (137), Expect = 7e-09
 Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 21/159 (13%)

Query: 120 PYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS-SGATRLGLGNLTNL 178
           P L+ +  L  L +       +          NLK+L +   G+  S    +   +L NL
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 179 EVLDLSANR----ISGSLTELAP------FRNLKVLGMRNNLLNGSVESK--GICELKNL 226
           E L L          G +    P      F NLK LG+ +      V         L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 227 TELDLGENNL--EG--QLPWCLSDLIGLKVLDISFNHLS 261
             +D+    L  EG   L   +  +  LK +++ +N+LS
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 7e-06
 Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 18/134 (13%)

Query: 71  LPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND---------SVLPY 121
            P   L+ L++        +   +         L+ L L     +            L  
Sbjct: 190 KPRPNLKSLEIISGGLP--DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLAN---LRNLKALNLSWNGIS-SGATRL--GLGNL 175
            +   +L  L +           +       L  L+ +++S   ++  GA  L   +  +
Sbjct: 248 KDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 176 TNLEVLDLSANRIS 189
            +L+ +++  N +S
Sbjct: 307 KHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 34/166 (20%)

Query: 100 SSKKLKILNLNYNNFNDSVLPYLNT--LTSLTTLNLYYNR--------IGGLNPSQGLAN 149
               LK L +      DSV+  +    L +L  L LY           +    P      
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 150 LRNLKALNLSWNGISSGATR--LGLGNLTNLEVLDLSANRISGS-LTELAPFRNLKVLGM 206
             NLK L +      +      L    L  LE +D+SA  ++      L           
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL---------- 300

Query: 207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKV 252
                        + ++K+L  +++  N L  ++   L   + +K+
Sbjct: 301 -----------DHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 37/226 (16%), Positives = 70/226 (30%), Gaps = 30/226 (13%)

Query: 102 KKLKILNLNYNNFNDSVLPYL-----NTLTSLTTLNLYYNRI---GGLNPSQGLANLRNL 153
            + + L L  N+        L     +    +TTL L  N +   G     +GLA   ++
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 154 KALNLSWNGIS-SGATRL--GLGNLTNLEVLDLSANRISGS----LTE-LAPFRNLKVLG 205
             L+L   G+   G   L   L     L+ L+++ N    +    L        +L++L 
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245

Query: 206 MRNNLLNGSVESKGICE----LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLS 261
           +  N L  S   + + +     +    + +                    +L     +L+
Sbjct: 246 LYFNEL-SSEGRQVLRDLGGAAEGGARVVVSLTEG------TAVSEYWSVILSEVQRNLN 298

Query: 262 GNLPSVIANLTSLEYLALSDNNFQGEFPLSL---LTNHSNLEVLLL 304
               + +     L    L D+      P      L     +  LL 
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLE 344

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 44/212 (20%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSG--------SSKKLKILNLNYNNFND----SVLPYLN 123
           +  L LS N            +           +  +  L+L +    D     +   L+
Sbjct: 157 ITTLRLSNNPLT--------AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208

Query: 124 TLTSLTTLNLYYNRI---GGLNPSQGLANLRNLKALNLSWNGIS-SGATRLG-----LGN 174
               L  LN+ YN       L  ++      +L+ L+L +N +S  G   L         
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG 268

Query: 175 LTNLEVLDLSANRIS-GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
              + V       +S      L+                 S +   +     L   DL +
Sbjct: 269 GARVVVSLTEGTAVSEYWSVILS----------EVQRNLNSWDRARVQRHLELLLRDLED 318

Query: 234 NNLEGQLPWCLSDLI----GLKVLDISFNHLS 261
           +      PW  + L+     ++ L        
Sbjct: 319 SRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 45/383 (11%), Positives = 107/383 (27%), Gaps = 69/383 (18%)

Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
           L    N + L  L   + +   L+    I     K+ +      +++     H       
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFH------Y 59

Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS-----GILQLPKVKHDLLRHLDISNNN 404
           +  + +          +  + L  L L+    +      +  +       L  +++++  
Sbjct: 60  EFQNQRFS-------AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ 112

Query: 405 LTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM-----KELFLLDLSRNKFSGDLS 459
           L     + +  V  +   + +  N+        + ++      ++  L LS N       
Sbjct: 113 LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAG 171

Query: 460 ----ATSVIRCASLEYLDVSENNFY----GHIFPTYMNLTQLRWLYLKNNHFTGK----I 507
                  +    S+ +L +            +        QL+ L +  N         +
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231

Query: 508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQL 567
                    L +L +  N LS      +      D+   ++               ++ +
Sbjct: 232 ARAAREHPSLELLHLYFNELSSEGRQVLR-----DLGGAAEGGA------------RVVV 274

Query: 568 LDLSENRL--FGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF--- 622
                  +  + S+  S    ++                 + R  ELL  DL D++    
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRAR----------VQRHLELLLRDLEDSRGATL 324

Query: 623 -FGRIPDQINNHSELRVLLLRGN 644
              R    +    E+R LL +  
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 54/367 (14%), Positives = 107/367 (29%), Gaps = 67/367 (18%)

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
           +  L +L        ++G L    G   L   + L+  +        R     L++L  L
Sbjct: 22  IKNLDALENAQAIKKKLGKL----GRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQL 77

Query: 182 DLSANRISGS-LTELA-----PFRNLKVLGMRNNLLNGSVESKGICE-LKNLTELDLGEN 234
           +L+  R++    T +A         L  + + +  L      + +        +L L  N
Sbjct: 78  NLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLN 136

Query: 235 NLEGQLPWCLSDLI-----GLKVLDISFNHLSGN----LPSVIANLTSLEYLALSDNNFQ 285
           +L  +    L DL+      +  L +S N L+      L   +A  TS+ +L+L      
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL-----KVIPSFL 340
            E    L           L  +  L+              L +            +    
Sbjct: 197 DEGLELL--------AAQLDRNRQLQ-------------ELNVAYNGAGDTAALALARAA 235

Query: 341 LHQYDFKFLDLSSNKLVGNFPTWL------MQNNTKLEVLRLSNNSFSGILQLPKVKHDL 394
                 + L L  N+L       L       +   ++ V      + S      +    +
Sbjct: 236 REHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS------EYWSVI 289

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM----KELFLLDLS 450
           L  +  + N+      Q       +L+  D+  +      P+   ++     E+  L   
Sbjct: 290 LSEVQRNLNSWDRARVQRH----LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQ 345

Query: 451 RNKFSGD 457
                  
Sbjct: 346 LGSSGSP 352

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 29/263 (11%)

Query: 24  ISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSG 83
            SD   W+ +                ++    +     F     +       +Q +DLS 
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 84  NYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY-NRIGGLN 142
           +  +    +          KL+ L+L     +D ++  L   ++L  LNL   +      
Sbjct: 103 SVIEVSTLHG---ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 143 PSQGLANLRNLKALNLSW-NGISSGATRLGLG-NLTNLEVLDLSANRISGSLTELAPFRN 200
               L++   L  LNLSW    +    ++ +      +  L+LS      +L +      
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS--GYRKNLQKSD---- 213

Query: 201 LKVLGMRNNLLNGSVESKGICELKNLTELDLGE-NNLEGQLPWCLSDLIGLKVLDISF-N 258
           L  L  R                 NL  LDL +   L+         L  L+ L +S   
Sbjct: 214 LSTLVRR---------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258

Query: 259 HLSGNLPSVIANLTSLEYLALSD 281
            +       +  + +L+ L +  
Sbjct: 259 DIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 14/194 (7%)

Query: 122 LNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
              L S   +     R     P     +   ++ ++LS + I        L   + L+ L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 182 DLSANRIS-GSLTELAPFRNLKVLGMRNNLLNGSVESKGICEL----KNLTELDLG---- 232
            L   R+S   +  LA   NL  L +             +  L      L EL+L     
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSSCSRLDELNLSWCFD 180

Query: 233 --ENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPL 290
             E +++  +      +  L +     N    +L +++    +L +L LSD+        
Sbjct: 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240

Query: 291 SLLTNHSNLEVLLL 304
                 + L+ L L
Sbjct: 241 QEFFQLNYLQHLSL 254

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
             L L+ N F   V   L+    LT ++L  NRI  L  +Q  +N+  L  L LS+N + 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR 91

Query: 165 S---GATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVL 204
                        L +L +L L  N IS  + E A F +L  L
Sbjct: 92  CIPPRT----FDGLKSLRLLSLHGNDIS-VVPEGA-FNDLSAL 128

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 35/161 (21%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLG---NLTNLEVLD 182
           T+   L L+ N+I  L       +L NLK L L  N + +    L +G   +LT L VLD
Sbjct: 40  TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGA----LPVGVFDSLTQLTVLD 94

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICE-LKNLTELDLGENNLEGQLP 241
           L  N+    LT L                        + + L +L EL +  N L   LP
Sbjct: 95  LGTNQ----LTVLPS---------------------AVFDRLVHLKELFMCCNKLTE-LP 128

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
             +  L  L  L +  N L          L+SL +  L  N
Sbjct: 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 218 KGICELKNLTELDLGENNLEGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
             +   +NLTEL +        L    L  L  L+ L I  + L    P        L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 277 LALSDNNFQ 285
           L LS N  +
Sbjct: 85  LNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 10/134 (7%)

Query: 554 NIPVQINNFRQLQLLDLSENRLFGSIASS--LNLSSIMHLYLQNNALSGQIPSTLFRSTE 611
           +    +     L  L +   +    +       L  + +L +  + L   +    F  T 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 612 LLT-LDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
            L+ L+L  N     +  +      L+ L+L GN L        C L+ L   +      
Sbjct: 81  RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH-----CSCALRWLQRWEEEGLGG 134

Query: 671 NGSIPSCFVNMLFW 684
                         
Sbjct: 135 VPEQKLQCHGQGPL 148

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 191 SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGL 250
           SL  L    NL  L + N      +E + +  L  L  L + ++ L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 251 KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
             L++SFN L       +  L SL+ L LS N   
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 27/135 (20%), Positives = 39/135 (28%), Gaps = 25/135 (18%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA 185
               +  L   R G L+    L    NL  L +             L  L  L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245
           + +   +   A F                           L+ L+L  N LE  L W   
Sbjct: 66  SGLR-FVAPDA-FHF----------------------TPRLSRLNLSFNALE-SLSWKTV 100

Query: 246 DLIGLKVLDISFNHL 260
             + L+ L +S N L
Sbjct: 101 QGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 595 NNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQ-INNHSELRVLLLRGNYLQGQIPIA 653
               +      L  +  L  L + + +    +  + +    ELR L +  + L+   P A
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 654 LCQLQKLGILDLSHNKLNGSIPSCFVNM 681
                +L  L+LS N L          +
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI----- 384
                     L    +   L + + + + +     ++   +L  L +  +    +     
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 385 LQLPKVKHDLLRHLDISNNNLT 406
              P+     L  L++S N L 
Sbjct: 77  HFTPR-----LSRLNLSFNALE 93

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 29/128 (22%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLG---NLTNLEVLD 182
              T L L  N +G ++       L +L  L L  N ++     +        ++++ L 
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQ 84

Query: 183 LSANRIS----GSLTELAPFRNLKVLGMRNNLL----NGSVESKGICELKNLTELDLGEN 234
           L  N+I          L     LK L + +N +     GS E      L +LT L+L  N
Sbjct: 85  LGENKIKEISNKMFLGL---HQLKTLNLYDNQISCVMPGSFEH-----LNSLTSLNLASN 136

Query: 235 NLEGQLPW 242
                 P+
Sbjct: 137 ------PF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 176 TNLEVLDLSANRISGSLTELAPF---RNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
            +   L L+ N +   ++    F    +L  L ++ N L   +E        ++ EL LG
Sbjct: 29  LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 233 ENNLEGQLPWCLSD-LIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
           EN ++ ++   +   L  LK L++  N +S  +P    +L SL  L L+ N
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGIS 164
             L+L  N+         + LTSLT L L  N++  L P+     L +L  LNLS N + 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQ 89

Query: 165 SGATRLGLG---NLTNLEVLDLSANRISGSLTELAP-----FRNLKVLGMRNNLLNGSVE 216
           S    L  G    LT L+ L L+ N+    L  L          LK L +  N L  SV 
Sbjct: 90  S----LPNGVFDKLTQLKELALNTNQ----LQSLPDGVFDKLTQLKDLRLYQNQLK-SVP 140

Query: 217 SKGICELKNLTELDLGENNLEGQLPW 242
                 L +L  + L +N      PW
Sbjct: 141 DGVFDRLTSLQYIWLHDN------PW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 49/162 (30%), Positives = 64/162 (39%), Gaps = 36/162 (22%)

Query: 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLG---NLTNLEVLD 182
              T L+L  N +  L P+     L +L  L L  N + S    L  G    LT+L  L+
Sbjct: 28  AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLN 82

Query: 183 LSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICE-LKNLTELDLGENNLEGQLP 241
           LS N+    L  L                       G+ + L  L EL L  N L+  LP
Sbjct: 83  LSTNQ----LQSLPN---------------------GVFDKLTQLKELALNTNQLQ-SLP 116

Query: 242 WCLSD-LIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
             + D L  LK L +  N L      V   LTSL+Y+ L DN
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 21/157 (13%)

Query: 101 SKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLY-YNRI---GGLNPSQGLANLRNLKAL 156
            K +     N  +  +++    N    L  +NL     I        ++ L     +K  
Sbjct: 11  YKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKF 70

Query: 157 NLSWNGISS-GATRLG--LGNLTNLEVLDLSANRISG----SLTE-LAPFRNLKVLGMRN 208
           ++     +   A  L   L     L+ L++ +N ISG    +L E L    +L  L + N
Sbjct: 71  SIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN 130

Query: 209 NLLNGSVESKGICEL-------KNLTELDLGENNLEG 238
              +  + +    E+         L +          
Sbjct: 131 Q--SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 100 SSKKLKILNLNYNNFNDSVLPY----LNTLTSLTTLNLYYNRI---GGLNPSQGLANLRN 152
           ++  +K  ++     ND V       L    +L +LN+  N I   G L   + L +  +
Sbjct: 63  TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTS 122

Query: 153 LKALNLSWNGIS---SGATRLG--LGNLTNLEVLDLSANRISG 190
           L  L +         +    +   L   T L        +   
Sbjct: 123 LIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 34/139 (24%), Positives = 48/139 (34%), Gaps = 19/139 (13%)

Query: 75  ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLY 134
             Q LDL G   D     ++ D   + +      L     N         +  L +LNL 
Sbjct: 128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN---------IPELLSLNLS 178

Query: 135 YNRIGGLNPSQGLANLR-NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT 193
            NR+  L+    +     NLK LNLS N + S      +  L  LE L L  N +  +  
Sbjct: 179 NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237

Query: 194 E--------LAPFRNLKVL 204
           +           F  L  L
Sbjct: 238 DQSTYISAIRERFPKLLRL 256

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	783
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.56

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.2e-81  Score=738.12  Aligned_cols=640  Identities=29%  Similarity=0.415  Sum_probs=517.0

Q ss_pred             CCCCCCCcCCCCCCCCcccceeEecCCCCcEEEEEcCCCCcccccCCCCCCC--ccCcccccCCCCCCEEeCCCCCCCCC
Q 047035           12 ADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFP--ILNFSLFLPFQELQILDLSGNYFDGW   89 (783)
Q Consensus        12 ~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (783)
                      |. ++++|+.  ++|||.|+||+|+  .++|+.+++++..+        .+.  .+ +..+..+++|+.++++.+.+.. 
T Consensus        27 ~~-~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l--------~g~~~~l-~~~l~~L~~L~~l~~~~~~~~~-   91 (768)
T 3rgz_A           27 KN-LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPL--------NVGFSAV-SSSLLSLTGLESLFLSNSHING-   91 (768)
T ss_dssp             TT-SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCC--------CEEHHHH-HHHTTTCTTCCEEECTTSCEEE-
T ss_pred             cc-cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCc--------CCccCcc-ChhHhccCcccccCCcCCCcCC-
Confidence            44 8999974  3799999999998  68999999998765        211  02 2567889999999999887643 


Q ss_pred             CCCCCCcccCCCCCCCEEeCCCCCCCCCCcc--cccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCc
Q 047035           90 NENKDYDSSGSSKKLKILNLNYNNFNDSVLP--YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGA  167 (783)
Q Consensus        90 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~  167 (783)
                      .+    ..++.+++|++|+|++|.+.+.+|.  .++++++|++|+|++|.+.+..|...+.++++|++|++++|.+++..
T Consensus        92 l~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  167 (768)
T 3rgz_A           92 SV----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN  167 (768)
T ss_dssp             CC----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred             Cc----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence            22    5789999999999999999988888  99999999999999999988877644589999999999999998766


Q ss_pred             Cccc---cCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccc
Q 047035          168 TRLG---LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL  244 (783)
Q Consensus       168 ~~~~---l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  244 (783)
                      +. .   ++++++|++|++++|.+.+..+ +..+++|++|++++|.+++.++ . ++++++|++|++++|.+.+.+|..+
T Consensus       168 ~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          168 VV-GWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             HH-HHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             Ch-hhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcccHHH
Confidence            53 3   7899999999999999987555 4889999999999999988777 3 9999999999999999999999999


Q ss_pred             cCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCcccc
Q 047035          245 SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLK  324 (783)
Q Consensus       245 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  324 (783)
                      ..+++|++|++++|.+++.+|..  .+++|++|++++|.+.+.+|......+++|++|++++|.+....+..+..+++|+
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  321 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE  321 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred             hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence            99999999999999999888765  8999999999999999999976555569999999999998877777888889999


Q ss_pred             EEeCCCCCCC-ccChh-hhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccC--CCCccEEEc
Q 047035          325 VLQLPNCNLK-VIPSF-LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVK--HDLLRHLDI  400 (783)
Q Consensus       325 ~L~L~~~~l~-~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~L  400 (783)
                      +|++++|.+. .+|.. +..+++|++|++++|.+.+.+|..+....++|++|++++|.+++..+.....  +++|++|++
T Consensus       322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L  401 (768)
T 3rgz_A          322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL  401 (768)
T ss_dssp             EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred             EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence            9999999988 88876 8889999999999999998888887633348999999999988764444433  778999999


Q ss_pred             ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccc
Q 047035          401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY  480 (783)
Q Consensus       401 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  480 (783)
                      ++|++++.+|..+. .+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|++.
T Consensus       402 ~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          402 QNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLT  479 (768)
T ss_dssp             CSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             CCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCccc
Confidence            99999888888875 6889999999999999999999999999999999999998888765 468899999999999999


Q ss_pred             ccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc
Q 047035          481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN  560 (783)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  560 (783)
                      +.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|.+.+.+|..++++++|+.|++++|+++|.+|..+.
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCCCEEeCCCc----------------------cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEEC
Q 047035          561 NFRQLQLLDLSEN----------------------RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDL  617 (783)
Q Consensus       561 ~l~~L~~L~Ls~N----------------------~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  617 (783)
                      ....+..+++..+                      .+.+..+..+ .++.++.+++..|.+.|.+|..+..+++|+.|||
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL  639 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM  639 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence            7665554444331                      1122222222 3344444555555555555555555555555555


Q ss_pred             cCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcch
Q 047035          618 RDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCF  678 (783)
Q Consensus       618 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  678 (783)
                      ++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.||..+
T Consensus       640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence            5555555555555555555555555555555555555555555555555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-73  Score=673.82  Aligned_cols=644  Identities=30%  Similarity=0.385  Sum_probs=550.4

Q ss_pred             CCCEEeCCCCCCCCC---CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc-hhccCC
Q 047035           75 ELQILDLSGNYFDGW---NENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPS-QGLANL  150 (783)
Q Consensus        75 ~L~~L~Ls~n~l~~~---~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~l~~l  150 (783)
                      +++.|||+++.+.|.   ++    .++.++++|+.++++.+.+. ..|..++.+++|++|+|++|.+.+.+|. ..++++
T Consensus        51 ~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  125 (768)
T 3rgz_A           51 KVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC  125 (768)
T ss_dssp             EEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred             cEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC
Confidence            688999999998886   55    67889999999999998774 3568899999999999999999887663 268999


Q ss_pred             CCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-C---cCCCCCCCEEEccCccCcccCCcccccCCCCC
Q 047035          151 RNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-E---LAPFRNLKVLGMRNNLLNGSVESKGICELKNL  226 (783)
Q Consensus       151 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~---l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  226 (783)
                      ++|++|++++|.+....+...++++++|++|++++|.+++..+ .   +.++++|++|++++|.+.+.++   +..+++|
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L  202 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNL  202 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTC
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcC
Confidence            9999999999999876664445889999999999999998776 4   7899999999999999987655   4889999


Q ss_pred             cEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEecc
Q 047035          227 TELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKV  306 (783)
Q Consensus       227 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~  306 (783)
                      ++|++++|.+.+.+|. ++++++|++|++++|.+++.+|.+++++++|++|++++|.+.+.+|..   .+++|++|++++
T Consensus       203 ~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~  278 (768)
T 3rgz_A          203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAE  278 (768)
T ss_dssp             CEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCS
T ss_pred             CEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcC
Confidence            9999999999988887 999999999999999999999999999999999999999999888853   889999999999


Q ss_pred             CcccccCCCCCCC-CccccEEeCCCCCCC-ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCc
Q 047035          307 SSNLRLKTENWIP-TFQLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI  384 (783)
Q Consensus       307 ~~~~~~~~~~~~~-~~~L~~L~L~~~~l~-~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  384 (783)
                      |.+....+..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.
T Consensus       279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~  358 (768)
T 3rgz_A          279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE  358 (768)
T ss_dssp             SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred             CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence            9887544444444 489999999999998 88889999999999999999999889987666899999999999999876


Q ss_pred             ccCCccCCC-CccEEEcccCcCCCCCChhhhhh-cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhh
Q 047035          385 LQLPKVKHD-LLRHLDISNNNLTGMLPQNMGIV-IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS  462 (783)
Q Consensus       385 ~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~  462 (783)
                      .+..+..++ +|++|++++|++++.+|..++.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|.. 
T Consensus       359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-  437 (768)
T 3rgz_A          359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-  437 (768)
T ss_dssp             CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-
T ss_pred             ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-
Confidence            555555665 89999999999988888776521 678999999999999999999999999999999999998777765 


Q ss_pred             hhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCc
Q 047035          463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD  542 (783)
Q Consensus       463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  542 (783)
                      +..+++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            56889999999999999988898899999999999999999998999999999999999999999999999999999999


Q ss_pred             EEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccC---------C-------------ccc
Q 047035          543 VLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN---------N-------------ALS  599 (783)
Q Consensus       543 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~---------n-------------~l~  599 (783)
                      +|++++|++++.+|..++.+++|++|++++|+++|.+|..+ ....+..+++..         +             .+.
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999998877 555444433332         1             245


Q ss_pred             ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchh
Q 047035          600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFV  679 (783)
Q Consensus       600 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  679 (783)
                      +..|..+..++.++.++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|.+++++++|+.|+|++|+++|.||..++
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  677 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG  677 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence            56677777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCcccCCcceeeeecCCcccccccccccccccccCCCCccccccceEEEEeccceeeecCCccCcceeEecc
Q 047035          680 NMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLS  759 (783)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ldls  759 (783)
                      +++.+..           ++                ++.|.+.|.++...                  ..++.|+.+|+|
T Consensus       678 ~L~~L~~-----------Ld----------------Ls~N~l~g~ip~~l------------------~~l~~L~~L~ls  712 (768)
T 3rgz_A          678 DLRGLNI-----------LD----------------LSSNKLDGRIPQAM------------------SALTMLTEIDLS  712 (768)
T ss_dssp             GCTTCCE-----------EE----------------CCSSCCEECCCGGG------------------GGCCCCSEEECC
T ss_pred             CCCCCCE-----------EE----------------CCCCcccCcCChHH------------------hCCCCCCEEECc
Confidence            8875431           21                23344444433221                  356789999999


Q ss_pred             CCcCcccCCccccCcCCC
Q 047035          760 YNELTGEIPSEIGELPKV  777 (783)
Q Consensus       760 ~N~l~g~ip~~~~~l~~L  777 (783)
                      +|+|+|+||+. +.+..+
T Consensus       713 ~N~l~g~iP~~-~~~~~~  729 (768)
T 3rgz_A          713 NNNLSGPIPEM-GQFETF  729 (768)
T ss_dssp             SSEEEEECCSS-SSGGGS
T ss_pred             CCcccccCCCc-hhhccC
Confidence            99999999964 334333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-58  Score=540.20  Aligned_cols=576  Identities=21%  Similarity=0.230  Sum_probs=375.0

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035           74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL  153 (783)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L  153 (783)
                      +++++|+|++|.+++..+    ..++++++|++|+|++|.+++..|..++++++|++|+|++|.+++. |...|+++++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCC
Confidence            577777777777776655    5577777777777777777777777777777777777777777765 33357777777


Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccc--cCCCCCcEEE
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGI--CELKNLTELD  230 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~  230 (783)
                      ++|++++|.+....+. .++++++|++|++++|.+++.++ .++.+++|++|++++|.+++..+ ..+  ..+++|++|+
T Consensus       100 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLE  177 (680)
T ss_dssp             SEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEESEEE
T ss_pred             CEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhhccccccccEEE
Confidence            7777777777665542 56777777777777777776655 56777777777777777764333 333  2456777777


Q ss_pred             ccCccccccCCccccCCCCCCEEEcccccCCccCchhhc---CCCCCCEEeCcCCccceecChhhhcCCC--CCcEEEec
Q 047035          231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA---NLTSLEYLALSDNNFQGEFPLSLLTNHS--NLEVLLLK  305 (783)
Q Consensus       231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~~l~~l~--~L~~L~l~  305 (783)
                      +++|.+.+..|..+..+++|+.|++.++.+.......+.   ..++|++|++++|.+.+..|. .+..++  +|++|+++
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls  256 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLS  256 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECT
T ss_pred             CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECC
Confidence            777777766666777777777777777665432222111   246677777777766644442 344443  25555555


Q ss_pred             cCcccccCCCCCCCCccccEEeCCCCCCC-ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCc
Q 047035          306 VSSNLRLKTENWIPTFQLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI  384 (783)
Q Consensus       306 ~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  384 (783)
                      +|.+.......+..+++|++|++++|.+. ..|..+..+++|+.|++++|...+.++..                .+..+
T Consensus       257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i  320 (680)
T 1ziw_A          257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SLPKI  320 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------CCEE
T ss_pred             CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc----------------ccccc
Confidence            55554444444444455555555555544 22334444445555555444332211100                00111


Q ss_pred             ccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCccccc--CCccccC--CCCCCeeeccCCcCccccCh
Q 047035          385 LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGN--IPYSIGE--MKELFLLDLSRNKFSGDLSA  460 (783)
Q Consensus       385 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~--l~~L~~L~L~~n~l~~~i~~  460 (783)
                      ....+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+...  .+..+..  .++|+.|++++|++++..| 
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-  398 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-  398 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-
Confidence            11233455666666666666664433333 3556666666666654321  1112222  2456666666666663333 


Q ss_pred             hhhhcCCCCcEEECcCccccccCC-CcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccc--ccCCCCcCC
Q 047035          461 TSVIRCASLEYLDVSENNFYGHIF-PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS--GHIPCWIGN  537 (783)
Q Consensus       461 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~  537 (783)
                      ..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.  +.+|..+++
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence            344566667777777766665444 45666677777777777776666666777777777777777765  456777777


Q ss_pred             CCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccc--------ccc-CcCCCcEEEccCCcccccCchhhhc
Q 047035          538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA--------SSL-NLSSIMHLYLQNNALSGQIPSTLFR  608 (783)
Q Consensus       538 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~-~l~~L~~L~L~~n~l~~~~p~~l~~  608 (783)
                      +++|+.|++++|++++..+..+..+++|++|++++|++.+..+        ..+ .+++|++|++++|+++...+..|.+
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            7777777777777776666677777778888888887765321        124 7889999999999998444456899


Q ss_pred             CCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchh-CCCCCCEEecCCCcCcccCC
Q 047035          609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC-QLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       609 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP  675 (783)
                      +++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+. .+++|+.|++++|++.+..+
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999999999877777788999999999999999988887787 79999999999999998766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-57  Score=532.76  Aligned_cols=585  Identities=21%  Similarity=0.207  Sum_probs=480.1

Q ss_pred             cccceeEecC---------CCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCCCCCccc
Q 047035           28 CDWERVTCDA---------TAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSS   98 (783)
Q Consensus        28 c~w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l   98 (783)
                      |.++.+.|..         ...+++.++++++.+          ..+.+..|..+++|++|+|++|.+++..+    .++
T Consensus         4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~   69 (680)
T 1ziw_A            4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQL----------RRLPAANFTRYSQLTSLDVGFNTISKLEP----ELC   69 (680)
T ss_dssp             CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCC----------CCCCGGGGGGGTTCSEEECCSSCCCCCCT----THH
T ss_pred             eECCeeECCCCCccccccccCCCCcEEECCCCCC----------CCcCHHHHhCCCcCcEEECCCCccCccCH----HHH
Confidence            5556667753         234788999998865          23555679999999999999999998877    788


Q ss_pred             CCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCC
Q 047035           99 GSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNL  178 (783)
Q Consensus        99 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  178 (783)
                      +++++|++|+|++|.+++..+..|+++++|++|+|++|.+.+..| ..++++++|++|++++|.+.+..+. .++++++|
T Consensus        70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  147 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENL  147 (680)
T ss_dssp             HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTC
T ss_pred             hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCch-hhcccccC
Confidence            999999999999999997766789999999999999999988755 4799999999999999999887663 68899999


Q ss_pred             CEEECcCCcCcccCC-C--cCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCcccc---CCCCCCE
Q 047035          179 EVLDLSANRISGSLT-E--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS---DLIGLKV  252 (783)
Q Consensus       179 ~~L~Ls~n~~~~~~~-~--l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~  252 (783)
                      ++|++++|.+++.++ .  ...+++|++|++++|.+++..+ ..+..+++|+.|++.++.+.......+.   ..++|+.
T Consensus       148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~  226 (680)
T 1ziw_A          148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN  226 (680)
T ss_dssp             CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred             CEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence            999999999988766 3  3467899999999999986555 7889999999999999987643222221   3478999


Q ss_pred             EEcccccCCccCchhhcCCCC--CCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCC
Q 047035          253 LDISFNHLSGNLPSVIANLTS--LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPN  330 (783)
Q Consensus       253 L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  330 (783)
                      |++++|.+++..|.++.+++.  |++|++++|.+.+. +...++.+++|++|++++|.+.......+..+++|++|++++
T Consensus       227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             EECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             EEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc-CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            999999999999999988865  99999999999854 445689999999999999999888888899999999999998


Q ss_pred             CCCC------ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCc
Q 047035          331 CNLK------VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNN  404 (783)
Q Consensus       331 ~~l~------~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~  404 (783)
                      |...      .+|.                     ++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       306 ~~~~~~~~~~~lp~---------------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          306 SFTKQSISLASLPK---------------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CBCCC------CCE---------------------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             hhhhcccccccccc---------------------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            7544      2221                     111112245555666666665555544445556666666666665


Q ss_pred             CCCC-CChhhhhh--cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035          405 LTGM-LPQNMGIV--IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG  481 (783)
Q Consensus       405 l~~~-~p~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  481 (783)
                      +... ++...+..  .++|+.|++++|++++..|.++..+++|+.|++++|.+.+.++...+..+++|++|++++|++.+
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  444 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ  444 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence            4322 22222211  35899999999999988899999999999999999999888887778899999999999999998


Q ss_pred             cCCCcccCCCCccEEEccCcccc--cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc---
Q 047035          482 HIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP---  556 (783)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---  556 (783)
                      ..+..|..+++|+.|++++|.+.  +..|..+..+++|++|++++|.+++..|..++++++|++|++++|++++..+   
T Consensus       445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  524 (680)
T 1ziw_A          445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN  524 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred             eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence            88888999999999999999986  5678889999999999999999998888889999999999999999986422   


Q ss_pred             -----ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhc
Q 047035          557 -----VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI  630 (783)
Q Consensus       557 -----~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  630 (783)
                           ..+.++++|++|++++|++....+..+ ++++|++|++++|++++..+..|.++++|+.|++++|++++..|..+
T Consensus       525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence                 237889999999999999985444556 89999999999999997777778899999999999999999888888


Q ss_pred             c-CCcCCCEEeCcCCcccccCC
Q 047035          631 N-NHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       631 ~-~l~~L~~L~L~~N~l~~~~p  651 (783)
                      . .+++|+.|++++|.+.+.-+
T Consensus       605 ~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          605 GPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             HHHHTTCSEEECTTCCCCBCCC
T ss_pred             cccccccCEEEccCCCcccCCc
Confidence            7 78999999999999987644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.2e-55  Score=502.65  Aligned_cols=539  Identities=19%  Similarity=0.165  Sum_probs=420.2

Q ss_pred             CEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeE
Q 047035           77 QILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKAL  156 (783)
Q Consensus        77 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  156 (783)
                      +.++.++..++..+     ..+  .+++++|+|++|.+++..|..|+++++|++|+|++|.+.+..|. .|+++++|++|
T Consensus        15 ~~~~c~~~~l~~iP-----~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L   86 (606)
T 3t6q_A           15 KTYNCENLGLNEIP-----GTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTL   86 (606)
T ss_dssp             TEEECTTSCCSSCC-----TTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred             ceEECCCCCcccCc-----CCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCee
Confidence            46778777776443     222  24688888888888877788888888888888888888877663 68888888888


Q ss_pred             eCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCcc
Q 047035          157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN  235 (783)
Q Consensus       157 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~  235 (783)
                      ++++|.+....+. .++++++|++|++++|.+++..+ .++.+++|++|++++|.+.+... ..+..+++|++|++++|.
T Consensus        87 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A           87 VLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             ECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSC
T ss_pred             eCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCc
Confidence            8888888766553 67778888888888888776544 66777777777777777764222 234446777777777777


Q ss_pred             ccccCCccccCCCCCC--EEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccC
Q 047035          236 LEGQLPWCLSDLIGLK--VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLK  313 (783)
Q Consensus       236 l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~  313 (783)
                      +.+..|..++.+++|+  +|++++|.+++..|..+. ..+|++|++++|..   ++ ..+..+..+....+         
T Consensus       165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~-~~~~~l~~~~l~~l---------  230 (606)
T 3t6q_A          165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LL-VIFKGLKNSTIQSL---------  230 (606)
T ss_dssp             CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HH-HHHHHTTTCEEEEE---------
T ss_pred             ccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HH-HHhhhccccchhhe---------
Confidence            6666566666666666  666667766655554443 34566666666642   11 12223333322211         


Q ss_pred             CCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcC--CCCcEEEccCccccCcccCCccC
Q 047035          314 TENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNN--TKLEVLRLSNNSFSGILQLPKVK  391 (783)
Q Consensus       314 ~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~  391 (783)
                                   .+...            ..+...         .++...+..+  .+|+.|++++|.++++.+..+..
T Consensus       231 -------------~~~~~------------~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~  276 (606)
T 3t6q_A          231 -------------WLGTF------------EDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC  276 (606)
T ss_dssp             -------------ECCCC------------TTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred             -------------echhh------------cccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence                         11110            000000         1111111122  26788888888888876666788


Q ss_pred             CCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcE
Q 047035          392 HDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEY  471 (783)
Q Consensus       392 ~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  471 (783)
                      +++|++|++++|+++ .+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++...+..+++|++
T Consensus       277 l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          277 FSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             CTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             ccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            889999999999888 7887764 68899999999999998888899999999999999999988888888889999999


Q ss_pred             EECcCccccccC--CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCC-cCCCCCCcEEECCC
Q 047035          472 LDVSENNFYGHI--FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW-IGNFSYLDVLLMSK  548 (783)
Q Consensus       472 L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~  548 (783)
                      |++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.. +.++++|++|++++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence            999999998765  678899999999999999999888999999999999999999999876654 89999999999999


Q ss_pred             CcccccCcccccCCCCCCEEeCCCcccccc-cc--ccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcccc
Q 047035          549 NHLEGNIPVQINNFRQLQLLDLSENRLFGS-IA--SSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG  624 (783)
Q Consensus       549 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p--~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  624 (783)
                      |.+++..|..+..+++|++|++++|++.+. ++  ..+ .+++|++|++++|++++..|..|.++++|+.|++++|++++
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            999999999999999999999999999873 22  445 89999999999999999999999999999999999999999


Q ss_pred             CCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       625 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      ..|+++..++.| .|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999 999999999999898999999999999999999987764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.7e-53  Score=486.67  Aligned_cols=519  Identities=22%  Similarity=0.208  Sum_probs=378.7

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035           74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL  153 (783)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L  153 (783)
                      +++++|++++|.+++..+    ..++++++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+..|. .++++++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTC
T ss_pred             CcCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccc
Confidence            479999999999998777    7899999999999999999988899999999999999999999988774 79999999


Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-CCcCCCCCCCEEEccCccCcccCCcccccCCCCCc--EEE
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT--ELD  230 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~--~L~  230 (783)
                      ++|++++|.++...+. .++++++|++|++++|.+++.. +.+..+++|++|++++|.+++..+ ..++.+++|+  +|+
T Consensus       108 ~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLN  185 (606)
T ss_dssp             CEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HHHHTTTTCCSEEEE
T ss_pred             cEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hhhhhhcccceeEEe
Confidence            9999999999987553 6899999999999999999854 566679999999999999985444 7789999999  999


Q ss_pred             ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035          231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL  310 (783)
Q Consensus       231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~  310 (783)
                      +++|.+.+..|..+.. .+|++|++++|.   .++..+..+.+++...+....+.            .+....+      
T Consensus       186 l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~------------~~~~~~i------  243 (606)
T 3t6q_A          186 LNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE------------DMDDEDI------  243 (606)
T ss_dssp             CTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT------------TSCCCCC------
T ss_pred             cCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhc------------ccccccc------
Confidence            9999999877766654 689999999986   45566677766655444333221            1110000      


Q ss_pred             ccCCCCCCCC--ccccEEeCCCCCCCccChh-hhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccC
Q 047035          311 RLKTENWIPT--FQLKVLQLPNCNLKVIPSF-LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL  387 (783)
Q Consensus       311 ~~~~~~~~~~--~~L~~L~L~~~~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  387 (783)
                        ....+...  .+++++++++|.++.++.. +..+++|++|++++|.+. .+|..+                       
T Consensus       244 --~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-----------------------  297 (606)
T 3t6q_A          244 --SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-----------------------  297 (606)
T ss_dssp             --CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-----------------------
T ss_pred             --ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-----------------------
Confidence              01111111  1455555555555544332 444455555555555544 344332                       


Q ss_pred             CccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCc-cccCCCCCCeeeccCCcCccccC-hhhhhc
Q 047035          388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLS-ATSVIR  465 (783)
Q Consensus       388 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~i~-~~~~~~  465 (783)
                        ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+... ...+..
T Consensus       298 --~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  374 (606)
T 3t6q_A          298 --VGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN  374 (606)
T ss_dssp             --CSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred             --cccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence              334445555555555443333333 2455566666666655544443 35666666666666666653320 223456


Q ss_pred             CCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccccc-ccccCCCCcEEEccCCcccccCCCCcCCCCCCcEE
Q 047035          466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA-GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL  544 (783)
Q Consensus       466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  544 (783)
                      +++|++|++++|++.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus       375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            67777777777777766666777777777777777777765543 36777888888888888887777788888888888


Q ss_pred             ECCCCccccc---CcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035          545 LMSKNHLEGN---IPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       545 ~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      ++++|++++.   .+..+..+++|++|++++|++++..|..+ .+++|++|++++|++++..|..+.+++.| .|++++|
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            8888888762   23567788888888888888888777777 78888888888888888888888888888 8999999


Q ss_pred             ccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035          621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                      ++++..|..+..+++|+.|++++|++.+..+
T Consensus       534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          534 HISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9988888888888899999999998886554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-53  Score=488.66  Aligned_cols=519  Identities=19%  Similarity=0.152  Sum_probs=325.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035           74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL  153 (783)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L  153 (783)
                      +++++|+|++|.+++..+    ..++++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|. .|+++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTC
T ss_pred             CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccC
Confidence            566777777766665554    4566666666666666666665566666666666666666666665443 56666666


Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcc-cCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEc
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG-SLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL  231 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  231 (783)
                      ++|++++|.+....+. .++++++|++|++++|.+++ .++ .++++++|++|++++|.+                    
T Consensus       107 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l--------------------  165 (606)
T 3vq2_A          107 ENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI--------------------  165 (606)
T ss_dssp             CEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC--------------------
T ss_pred             CEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc--------------------
Confidence            6666666666555432 45566666666666665553 112 445555555555555544                    


Q ss_pred             cCccccccCCccccCCCCCC----EEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035          232 GENNLEGQLPWCLSDLIGLK----VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS  307 (783)
Q Consensus       232 ~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~  307 (783)
                           .+..|..++.+++|+    +|++++|.+++..+..+... +|++|++++|.+.+......+.+++.++.+.+...
T Consensus       166 -----~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~  239 (606)
T 3vq2_A          166 -----QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG  239 (606)
T ss_dssp             -----CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             -----eecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence                 444344343333322    45555555443333332222 45555555554443333334455555555444322


Q ss_pred             cccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEc-cCCcccCCCChhhhhcCCCCcEEEccCccccCccc
Q 047035          308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL-SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ  386 (783)
Q Consensus       308 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  386 (783)
                      .......        +..+  .    ...+..+..+ .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+..+. 
T Consensus       240 ~~~~~~~--------l~~~--~----~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-  301 (606)
T 3vq2_A          240 EFKDERN--------LEIF--E----PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-  301 (606)
T ss_dssp             CCTTSCC--------CSCC--C----GGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-
T ss_pred             ccccCCc--------cccc--C----hHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh-
Confidence            2110000        0000  0    0111111111 3444555 44445544444  234555555555555554432 


Q ss_pred             CCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcC
Q 047035          387 LPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC  466 (783)
Q Consensus       387 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l  466 (783)
                       .+..                         +++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.+   .+..+
T Consensus       302 -~l~~-------------------------~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l  349 (606)
T 3vq2_A          302 -DVPK-------------------------HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVAL  349 (606)
T ss_dssp             -CCCT-------------------------TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCC
T ss_pred             -hccc-------------------------cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccC
Confidence             2233                         44555555555555 3445 23 5556666666666444333   23456


Q ss_pred             CCCcEEECcCcccccc--CCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcE
Q 047035          467 ASLEYLDVSENNFYGH--IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDV  543 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~  543 (783)
                      ++|++|++++|++.+.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..| ..+.++++|++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            6666666666666654  25556667777777777777764 45667777888888888888877766 67788888888


Q ss_pred             EECCCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCc
Q 047035          544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK  621 (783)
Q Consensus       544 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  621 (783)
                      |++++|++++..|..+..+++|++|++++|++.+ .+|..+ .+++|++|++++|++++..|..+.++++|++|++++|+
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            8888888888888888888888888888888887 367767 88899999999999988888899999999999999999


Q ss_pred             cccCCchhccCCcCCCEEeCcCCcccccCCcchhCCC-CCCEEecCCCcCcccCCc
Q 047035          622 FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ-KLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       622 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~  676 (783)
                      +++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++|++.+..|.
T Consensus       509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99989999999999999999999998 6787799997 599999999999987764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.7e-52  Score=479.63  Aligned_cols=515  Identities=19%  Similarity=0.172  Sum_probs=413.9

Q ss_pred             CCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEc
Q 047035          128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGM  206 (783)
Q Consensus       128 L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L  206 (783)
                      -++++.+++.++.+ |. .+.  +++++|++++|.+++..+. .++++++|++|++++|.+++..+ .++++++|++|++
T Consensus        13 ~~~~~c~~~~l~~i-p~-~~~--~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           13 NITYQCMDQKLSKV-PD-DIP--SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTEEECTTSCCSSC-CT-TSC--TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCceEccCCCcccC-CC-CCC--CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            46788888888775 43 333  7899999999998877663 68889999999999999888766 7888999999999


Q ss_pred             cCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccc
Q 047035          207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       207 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      ++|.+++..| ..++++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.
T Consensus        88 s~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           88 TGNPIQSFSP-GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCcccccCh-hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            9998875545 778889999999999998887776788889999999999998875 56888888999999999998888


Q ss_pred             eecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhh
Q 047035          286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLM  365 (783)
Q Consensus       286 ~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  365 (783)
                      +..+ ..++.+++|+.                    .++++++++|.++.++.......+|+.|++++|.+.+.......
T Consensus       167 ~~~~-~~~~~l~~L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  225 (606)
T 3vq2_A          167 TITV-NDLQFLRENPQ--------------------VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL  225 (606)
T ss_dssp             EECT-TTTHHHHHCTT--------------------CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH
T ss_pred             ecCh-hhhhhhhcccc--------------------ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHh
Confidence            5433 33444433320                    12345666666665555555555667777777666533333333


Q ss_pred             hcCCCCcEEEccCccccCcccCC------cc--CCCCccEEEc-ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCc
Q 047035          366 QNNTKLEVLRLSNNSFSGILQLP------KV--KHDLLRHLDI-SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY  436 (783)
Q Consensus       366 ~~l~~L~~L~L~~n~l~~~~~~~------~~--~~~~L~~L~L-~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  436 (783)
                      .+++.++.+++..+.+.......      +.  ..-.++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+. .+| 
T Consensus       226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-  301 (606)
T 3vq2_A          226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-  301 (606)
T ss_dssp             HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-
T ss_pred             ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccch-hhh-
Confidence            46666766666544433221111      11  1124667777 67777777776  357899999999999996 566 


Q ss_pred             cccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccc--cccccccC
Q 047035          437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGK--IKAGLLNS  514 (783)
Q Consensus       437 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~~  514 (783)
                      .+..+++|+.|++++|.+ +.+|.  + .+++|++|++++|...+..  .+..+++|++|++++|.+++.  .+..+..+
T Consensus       302 ~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT  375 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred             hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence            889999999999999999 58883  3 8999999999999665544  577899999999999999876  37888999


Q ss_pred             CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc-ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035          515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY  592 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~  592 (783)
                      ++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++.+..|..+ .+++|++|+
T Consensus       376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            999999999999985 66889999999999999999998887 689999999999999999999899888 999999999


Q ss_pred             ccCCcccc-cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035          593 LQNNALSG-QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       593 L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                      +++|++++ .+|..+..+++|++|++++|++++..|.++..+++|+.|++++|++++.+|..++++++|+.||+++|+++
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            99999998 47889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCCcchhhc
Q 047035          672 GSIPSCFVNM  681 (783)
Q Consensus       672 g~iP~~~~~~  681 (783)
                       .+|..+..+
T Consensus       535 -~~p~~~~~l  543 (606)
T 3vq2_A          535 -TSKGILQHF  543 (606)
T ss_dssp             -CEESCGGGS
T ss_pred             -ccCHhHhhh
Confidence             677776554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5e-50  Score=477.86  Aligned_cols=519  Identities=18%  Similarity=0.177  Sum_probs=274.8

Q ss_pred             CCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEE
Q 047035          102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL  181 (783)
Q Consensus       102 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  181 (783)
                      ++|++|+|++|.+++..+..|+++++|++|+|++|...+.++...|.++++|++|+|++|.+....+. .++++++|++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEe
Confidence            34444444444444444444444444444444444333322222444444444444444444443331 44455555555


Q ss_pred             ECcCCcCcccCC---CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCC--CCCCEEEcc
Q 047035          182 DLSANRISGSLT---ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL--IGLKVLDIS  256 (783)
Q Consensus       182 ~Ls~n~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~  256 (783)
                      +|++|.+++..+   .+.++++|++|++++|.+++..+...++++++|++|++++|.+.+..+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            555555544222   144555555555555555433333345555555555555555555555555544  556666666


Q ss_pred             cccCCccCchhhcCCCC------CCEEeCcCCccceecChhhhcC--CCCCcEEEeccCcccccCCCCCCCCccccEEeC
Q 047035          257 FNHLSGNLPSVIANLTS------LEYLALSDNNFQGEFPLSLLTN--HSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL  328 (783)
Q Consensus       257 ~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L  328 (783)
                      +|.+.+..|..++.+++      |++|++++|.+.+.++......  ..+++.+.+..+....               .+
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~  247 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---------------GF  247 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC---------------SS
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc---------------cc
Confidence            66555555544444443      6666666665554444322211  1233333332111100               00


Q ss_pred             CCCCCCccC-hhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCC
Q 047035          329 PNCNLKVIP-SFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG  407 (783)
Q Consensus       329 ~~~~l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  407 (783)
                      ..+.+.... ..+..+                       ..++|+.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus       248 ~~~~l~~~~~~~f~~l-----------------------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  304 (844)
T 3j0a_A          248 GFHNIKDPDQNTFAGL-----------------------ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK  304 (844)
T ss_dssp             SCSSSTTGGGTTTTTT-----------------------TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred             cccccCCCChhhhhcc-----------------------ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence            111111110 011111                       12345555555555544433344455555555555555554


Q ss_pred             CCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcc
Q 047035          408 MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTY  487 (783)
Q Consensus       408 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  487 (783)
                      ..|..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++.     
T Consensus       305 ~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----  377 (844)
T 3j0a_A          305 IADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----  377 (844)
T ss_dssp             ECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----
T ss_pred             CChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----
Confidence            333333 24556666666666665555556666666666666666654 34444445566666666666665431     


Q ss_pred             cCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccC-CCCcCCCCCCcEEECCCCcccccCcc-cccCCCCC
Q 047035          488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI-PCWIGNFSYLDVLLMSKNHLEGNIPV-QINNFRQL  565 (783)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L  565 (783)
                      ..+++|+.|++++|+++ .+|..   ..+++.|++++|.+.+.. +..++++++|+.|++++|++++..+. .+..+++|
T Consensus       378 ~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L  453 (844)
T 3j0a_A          378 HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL  453 (844)
T ss_dssp             SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC
T ss_pred             cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc
Confidence            12556666666666665 33332   345666666666666422 12244566666777777666644332 24445667


Q ss_pred             CEEeCCCccccc-----cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEE
Q 047035          566 QLLDLSENRLFG-----SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVL  639 (783)
Q Consensus       566 ~~L~Ls~N~l~~-----~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  639 (783)
                      +.|++++|.+.+     ..+..+ .+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+.  ++|+.|
T Consensus       454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L  531 (844)
T 3j0a_A          454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL  531 (844)
T ss_dssp             CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred             ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence            777777776652     333444 667777777777777777777777777777777777777766555554  677777


Q ss_pred             eCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          640 LLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       640 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      ++++|++++.+|..+   .+|+.|++++|++.+..+
T Consensus       532 ~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          532 DISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             ECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            887777777777654   467777888877776554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-49  Score=468.82  Aligned_cols=516  Identities=21%  Similarity=0.207  Sum_probs=379.2

Q ss_pred             CEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-C-CcCCCCCCCEEEc
Q 047035          129 TTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T-ELAPFRNLKVLGM  206 (783)
Q Consensus       129 ~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L  206 (783)
                      +..+.+++.++.+ |.    -.++|++|+|++|.++...+. .++++++|++|+|++|...+.+ + .+.++++|++|++
T Consensus         7 ~~~dcs~~~L~~v-P~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            7 RIAFYRFCNLTQV-PQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEEESCCCSSCC-CS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             eEEEccCCCCCCC-CC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            3566666776665 42    346777777777777766543 6777777777777777544433 3 6777777777777


Q ss_pred             cCccCcccCCcccccCCCCCcEEEccCccccccCCcc--ccCCCCCCEEEcccccCCccCc-hhhcCCCCCCEEeCcCCc
Q 047035          207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC--LSDLIGLKVLDISFNHLSGNLP-SVIANLTSLEYLALSDNN  283 (783)
Q Consensus       207 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~  283 (783)
                      ++|.+.+..| ..++++++|++|++++|.+.+.+|..  |.++++|++|++++|.+++..+ ..|+++++|++|++++|.
T Consensus        81 s~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           81 GSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            7777765444 66777777777777777776655543  6777777777777777765543 456777777777777777


Q ss_pred             cceecChhhhcCC--CCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCC
Q 047035          284 FQGEFPLSLLTNH--SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP  361 (783)
Q Consensus       284 l~~~~p~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p  361 (783)
                      +.+..+. .+..+  ++|+.|+++.|.+.......+..+.+                .+ ....|+.|++++|.+.+.++
T Consensus       160 i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~----------------~~-~~~~L~~L~Ls~n~l~~~~~  221 (844)
T 3j0a_A          160 IFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN----------------PF-RNMVLEILDVSGNGWTVDIT  221 (844)
T ss_dssp             CCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC----------------TT-TTCCBSEEBCSSCCSSTTTT
T ss_pred             CCeeCHH-HcccccCCccceEECCCCccccccccchhhcCC----------------cc-ccCceeEEecCCCcCchhHH
Confidence            6644443 23333  55555555555443322222222111                00 01126666666666665555


Q ss_pred             hhhhhc--CCCCcEEEccCc---------cccCcccCCcc--CCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCC
Q 047035          362 TWLMQN--NTKLEVLRLSNN---------SFSGILQLPKV--KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN  428 (783)
Q Consensus       362 ~~~~~~--l~~L~~L~L~~n---------~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n  428 (783)
                      ..+...  .+.++.+.++.+         .+.......+.  ..++|+.|++++|.+.+..|..+ ..+++|++|++++|
T Consensus       222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n  300 (844)
T 3j0a_A          222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYN  300 (844)
T ss_dssp             SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESC
T ss_pred             HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCC
Confidence            544322  245566665532         22222222332  24789999999999986656555 47899999999999


Q ss_pred             cccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccc
Q 047035          429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK  508 (783)
Q Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  508 (783)
                      ++.+..|..|..+++|+.|++++|.+.+ ++...+..+++|++|++++|++.+..+..|..+++|++|++++|.+++.  
T Consensus       301 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i--  377 (844)
T 3j0a_A          301 KINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI--  377 (844)
T ss_dssp             CCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred             cCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc--
Confidence            9999989999999999999999999984 4445578999999999999999988888899999999999999999842  


Q ss_pred             cccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccC-cccccCCCCCCEEeCCCccccccccccc--Cc
Q 047035          509 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI-PVQINNFRQLQLLDLSENRLFGSIASSL--NL  585 (783)
Q Consensus       509 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~l  585 (783)
                         ..+++|+.|++++|++. .+|..   ..+++.|++++|++++.. +..+.++++|++|++++|++++..+...  .+
T Consensus       378 ---~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  450 (844)
T 3j0a_A          378 ---HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN  450 (844)
T ss_dssp             ---SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC
T ss_pred             ---cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccC
Confidence               23789999999999998 55544   467999999999998642 3346689999999999999987655433  78


Q ss_pred             CCCcEEEccCCccc-----ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCC
Q 047035          586 SSIMHLYLQNNALS-----GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKL  660 (783)
Q Consensus       586 ~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  660 (783)
                      ++|+.|++++|.++     +..|..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+.  ++|
T Consensus       451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L  528 (844)
T 3j0a_A          451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL  528 (844)
T ss_dssp             TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred             CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence            99999999999997     45567788999999999999999999999999999999999999999987776665  899


Q ss_pred             CEEecCCCcCcccCCcchhhcc
Q 047035          661 GILDLSHNKLNGSIPSCFVNML  682 (783)
Q Consensus       661 ~~L~ls~N~l~g~iP~~~~~~~  682 (783)
                      +.||+++|+++|.+|..+.++.
T Consensus       529 ~~L~Ls~N~l~~~~~~~~~~L~  550 (844)
T 3j0a_A          529 EILDISRNQLLAPNPDVFVSLS  550 (844)
T ss_dssp             CEEEEEEECCCCCCSCCCSSCC
T ss_pred             cEEECCCCcCCCCChhHhCCcC
Confidence            9999999999999999877654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=440.20  Aligned_cols=513  Identities=20%  Similarity=0.187  Sum_probs=406.9

Q ss_pred             CCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEc
Q 047035          128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGM  206 (783)
Q Consensus       128 L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L  206 (783)
                      .++++.++..++.+ |. .+  .+++++|++++|.++...+. .++++++|++|++++|++++..+ .++.+++|++|++
T Consensus         9 ~~~~~c~~~~l~~i-p~-~l--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFYKI-PD-NL--PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCSSC-CS-SS--CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCcccc-CC-Cc--cccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence            45677777666664 43 23  25799999999999887653 78899999999999999998776 7899999999999


Q ss_pred             cCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccc
Q 047035          207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       207 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      ++|.+++. ++..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.
T Consensus        84 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           84 TGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            99998754 44789999999999999999987655578999999999999999986 46889999999999999999988


Q ss_pred             eecChhhhcCCCCC----cEEEeccCcccccCCCCCCCCccccEEeCCCCCCC--ccChhhhcCCCCCEEEccCCcccCC
Q 047035          286 GEFPLSLLTNHSNL----EVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK--VIPSFLLHQYDFKFLDLSSNKLVGN  359 (783)
Q Consensus       286 ~~~p~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~  359 (783)
                      + ++...++.+++|    +.++++.|.+.......+... +|++|++++|...  .++..+..++.++...+....+.. 
T Consensus       163 ~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-  239 (570)
T 2z63_A          163 S-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-  239 (570)
T ss_dssp             E-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-
T ss_pred             e-ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-
Confidence            4 444456666666    566666665554444444333 4555555554322  333444444444443332211110 


Q ss_pred             CChhhhhcCCCCcEEEccCccccCcccCCccCCC--CccEEEcccC-cCCCCCChhhhhhcCCceEEeCCCCcccccCCc
Q 047035          360 FPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHD--LLRHLDISNN-NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY  436 (783)
Q Consensus       360 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  436 (783)
                              ...+          .......+..++  .++.++++++ .+.+.+|..+. .+++|++|++++|.+. .+|.
T Consensus       240 --------~~~l----------~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~  299 (570)
T 2z63_A          240 --------EGNL----------EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKD  299 (570)
T ss_dssp             --------CSSC----------EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCB
T ss_pred             --------chhh----------hhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhh
Confidence                    0001          011111111111  3567778777 66667776664 6899999999999998 6888


Q ss_pred             cccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccc--ccccccC
Q 047035          437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI--KAGLLNS  514 (783)
Q Consensus       437 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~~  514 (783)
                      .+..+ +|+.|++++|.+. .+|.   ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+
T Consensus       300 ~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  372 (570)
T 2z63_A          300 FSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT  372 (570)
T ss_dssp             CCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred             hhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccccc
Confidence            88888 9999999999998 6776   3678999999999998876554  68899999999999998654  6778899


Q ss_pred             CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc-ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035          515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY  592 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~  592 (783)
                      ++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+..+++|++|++++|++.+..|..+ .+++|++|+
T Consensus       373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            9999999999999966555 9999999999999999998766 578999999999999999999888888 899999999


Q ss_pred             ccCCccc-ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035          593 LQNNALS-GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       593 L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                      +++|.++ +.+|..+..+++|++|++++|++++..|.++..+++|+.|++++|++++..|..+.++++|+.|++++|+++
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            9999998 679999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             ccCCcc
Q 047035          672 GSIPSC  677 (783)
Q Consensus       672 g~iP~~  677 (783)
                      |.+|..
T Consensus       532 ~~~~~~  537 (570)
T 2z63_A          532 CSCPRI  537 (570)
T ss_dssp             CCTTTT
T ss_pred             CCCcch
Confidence            999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=438.26  Aligned_cols=499  Identities=21%  Similarity=0.191  Sum_probs=280.8

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035           74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL  153 (783)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L  153 (783)
                      +++++|++++|.+++..+    .++..+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..| ..|+++++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred             ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCcccc
Confidence            356666666666555444    445556666666666665555555555556666666666665555433 245555555


Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccC
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE  233 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  233 (783)
                      ++|++++|.+...... .++++++|++|++++|.+++.                      .+| ..++++++|++|++++
T Consensus       103 ~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~----------------------~lp-~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A          103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSF----------------------KLP-EYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             CEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCC----------------------CCC-GGGGGCTTCCEEECTT
T ss_pred             ccccccccccccCCCc-cccccccccEEecCCCcccee----------------------cCh-hhhcccCCCCEEeCcC
Confidence            5555555555554332 345555555555555555431                      122 3344444444444444


Q ss_pred             ccccccCCccccCCCCC----CEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcc
Q 047035          234 NNLEGQLPWCLSDLIGL----KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN  309 (783)
Q Consensus       234 n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~  309 (783)
                      |.+.+..+..++.+++|    +.|++++|.+++..|..+..+ +|++|++++|..........+..++.++...+.....
T Consensus       159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            44444444444444444    445555555544444444333 4555555544322111112344444444443322111


Q ss_pred             cccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCC-cccCCCChhhhhcCCCCcEEEccCccccCcccCC
Q 047035          310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSN-KLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP  388 (783)
Q Consensus       310 ~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  388 (783)
                      ..        ...++.  +....+..    +..+ .++.++++++ .+.+.+|..+. .+++|++|++++|.+.+++. .
T Consensus       238 ~~--------~~~l~~--~~~~~~~~----l~~l-~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~-~  300 (570)
T 2z63_A          238 RN--------EGNLEK--FDKSALEG----LCNL-TIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKD-F  300 (570)
T ss_dssp             CC--------CSSCEE--CCTTTTGG----GGGS-EEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEECSCCB-C
T ss_pred             cC--------chhhhh--cchhhhcc----cccc-chhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccchhhhh-h
Confidence            00        000110  11111111    1111 2455555555 44444554433 55666666666666554321 1


Q ss_pred             ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCC
Q 047035          389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCAS  468 (783)
Q Consensus       389 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  468 (783)
                      +..+ +|++|++++|.+. .+|.                           ..+++|+.|++++|.+.+..+.   ..+++
T Consensus       301 ~~~~-~L~~L~l~~n~~~-~l~~---------------------------~~l~~L~~L~l~~n~~~~~~~~---~~~~~  348 (570)
T 2z63_A          301 SYNF-GWQHLELVNCKFG-QFPT---------------------------LKLKSLKRLTFTSNKGGNAFSE---VDLPS  348 (570)
T ss_dssp             CSCC-CCSEEEEESCBCS-SCCB---------------------------CBCSSCCEEEEESCBSCCBCCC---CBCTT
T ss_pred             hccC-CccEEeeccCccc-ccCc---------------------------ccccccCEEeCcCCcccccccc---ccCCC
Confidence            2223 5555555555554 3333                           2344455555555554433332   34555


Q ss_pred             CcEEECcCccccccC--CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcEEE
Q 047035          469 LEYLDVSENNFYGHI--FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLL  545 (783)
Q Consensus       469 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~  545 (783)
                      |++|++++|++.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+.++++|++|+
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence            555555555554432  34455666666666666666654333 6677777777777777776555 4567777788888


Q ss_pred             CCCCcccccCcccccCCCCCCEEeCCCcccc-ccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccc
Q 047035          546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLF-GSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFF  623 (783)
Q Consensus       546 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  623 (783)
                      +++|++.+..|..+..+++|++|++++|++. +.+|..+ .+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            8888877777777778888888888888876 5677666 7888888888888888777888888888888888888888


Q ss_pred             cCCchhccCCcCCCEEeCcCCcccccCCc
Q 047035          624 GRIPDQINNHSELRVLLLRGNYLQGQIPI  652 (783)
Q Consensus       624 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  652 (783)
                      +..|..+..+++|+.|++++|++++..|.
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            87777888888888888888888877663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-49  Score=454.76  Aligned_cols=477  Identities=18%  Similarity=0.207  Sum_probs=246.1

Q ss_pred             CCCCcCCCCCCCCccc---ceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCC
Q 047035           15 ILTSWVDDGISDCCDW---ERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNE   91 (783)
Q Consensus        15 ~~~~W~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (783)
                      ..++|+.+  +|||.|   .||+|+. .|||+++++++.++         .+.++ ..++.+++|++|+|++|.+.....
T Consensus        56 ~~~~W~~~--~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l---------~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~  122 (636)
T 4eco_A           56 PGANWNFN--KELDMWGAQPGVSLNS-NGRVTGLSLEGFGA---------SGRVP-DAIGQLTELEVLALGSHGEKVNER  122 (636)
T ss_dssp             --CCCCCS--SCGGGTTCCTTEEECT-TCCEEEEECTTSCC---------EEEEC-GGGGGCTTCCEEESCCGGGGGTCC
T ss_pred             cCCCCCCC--CCcccccCCCCeEEcC-CCCEEEEEecCccc---------CCcCC-hHHhcCccceEEECcCCccccCCc
Confidence            45689754  789999   9999986 48999999998875         12232 567888888888888875421100


Q ss_pred             C--------CCCcccCCCCCCCEEeCCCCCCCCCCcccccC-CCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCC--C
Q 047035           92 N--------KDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT-LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS--W  160 (783)
Q Consensus        92 ~--------~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~--~  160 (783)
                      .        ......  +.+|+ ++++++.+.+.++..+.. +..+..+++....+..       .....++.+.+.  .
T Consensus       123 ~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~  192 (636)
T 4eco_A          123 LFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLS  192 (636)
T ss_dssp             SBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCS
T ss_pred             cccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-------ccccchhhhhhcccc
Confidence            0        000000  22334 444444444444433331 1112222222111110       011112222222  2


Q ss_pred             CCCCCCcCccccCCCCCCCEEECcCCcCcc------------------cCCCcC--CCCCCCEEEccCccCcccCCcccc
Q 047035          161 NGISSGATRLGLGNLTNLEVLDLSANRISG------------------SLTELA--PFRNLKVLGMRNNLLNGSVESKGI  220 (783)
Q Consensus       161 n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~------------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l  220 (783)
                      |++++ .+ ..++++++|++|+|++|.+++                  .+..++  ++++|++|++++|.+.+.+| ..+
T Consensus       193 n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l  269 (636)
T 4eco_A          193 NNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL  269 (636)
T ss_dssp             CEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT
T ss_pred             CCCcc-CC-HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH
Confidence            34444 22 145555555555555555555                  222444  45555555555555444444 444


Q ss_pred             cCCCCCcEEEccCcc-ccc-cCCccccCC------CCCCEEEcccccCCccCch--hhcCCCCCCEEeCcCCccceecCh
Q 047035          221 CELKNLTELDLGENN-LEG-QLPWCLSDL------IGLKVLDISFNHLSGNLPS--VIANLTSLEYLALSDNNFQGEFPL  290 (783)
Q Consensus       221 ~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~  290 (783)
                      +++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ .+|.  .++++++|++|++++|.+.|.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            555555555555554 444 444444443      44555555555554 4444  44555555555555555444444 


Q ss_pred             hhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCC-CCEEEccCCcccCCCChhhhh-cC
Q 047035          291 SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD-FKFLDLSSNKLVGNFPTWLMQ-NN  368 (783)
Q Consensus       291 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~-~l  368 (783)
                                               .+..+++|++|++++|.++.+|..+..+++ |++|++++|.+. .+|..+.. .+
T Consensus       348 -------------------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          348 -------------------------AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             -------------------------CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             -------------------------hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence                                     333344555556666666666666666666 666666666666 55543321 12


Q ss_pred             CCCcEEEccCccccCcccCCcc-------CCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCC
Q 047035          369 TKLEVLRLSNNSFSGILQLPKV-------KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM  441 (783)
Q Consensus       369 ~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  441 (783)
                      ++|++|++++|.+.+..+..+.       .+++|++|++++|+++ .+|..++..+++|++|++++|.++          
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~----------  470 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT----------  470 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS----------
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC----------
Confidence            2555555555555544322222       3445555555555555 445444444455555555555554          


Q ss_pred             CCCCeeeccCCcCccccChhhhhcC-------CCCcEEECcCccccccCCCccc--CCCCccEEEccCcccccccccccc
Q 047035          442 KELFLLDLSRNKFSGDLSATSVIRC-------ASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAGLL  512 (783)
Q Consensus       442 ~~L~~L~L~~n~l~~~i~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~  512 (783)
                                     .+|...+...       ++|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+.
T Consensus       471 ---------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~  533 (636)
T 4eco_A          471 ---------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL  533 (636)
T ss_dssp             ---------------BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             ---------------CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence                           3333332222       25666666666665 3455444  56666666666666665 566666


Q ss_pred             cCCCCcEEEcc------CCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccc
Q 047035          513 NSHGLVVLDIS------NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF  576 (783)
Q Consensus       513 ~~~~L~~L~Ls------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  576 (783)
                      .+++|++|+++      +|.+.+.+|..++++++|++|++++|++ +.+|..+.  ++|++|++++|++.
T Consensus       534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            66666666664      4555556666666666666666666666 35555443  45666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.8e-47  Score=443.33  Aligned_cols=474  Identities=18%  Similarity=0.210  Sum_probs=243.4

Q ss_pred             CcCCCC---CCCC--ccc------------ceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEe
Q 047035           18 SWVDDG---ISDC--CDW------------ERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILD   80 (783)
Q Consensus        18 ~W~~~~---~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~   80 (783)
                      +|+...   ..+|  |.|            .||+|+. .++|++|+|+++++         .+.+ +..++.+++|++|+
T Consensus       285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L---------~G~i-p~~l~~L~~L~~Ld  353 (876)
T 4ecn_A          285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA---------KGRV-PDAIGQLTELKVLS  353 (876)
T ss_dssp             GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC---------EEEE-CGGGGGCTTCCEEE
T ss_pred             CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC---------CCcC-chHHhccccceEee
Confidence            896542   1345  999            9999986 68999999998875         1222 35678888888888


Q ss_pred             C-CCCCCCCCCCCCCCcccCCCCCCCE-----EeC----------CCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc
Q 047035           81 L-SGNYFDGWNENKDYDSSGSSKKLKI-----LNL----------NYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPS  144 (783)
Q Consensus        81 L-s~n~l~~~~~~~~~~~l~~l~~L~~-----L~L----------s~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  144 (783)
                      | ++|.+.|..+..   .......+..     +..          ....+.+..+..+...+.             ..+.
T Consensus       354 Lss~N~lsG~~~~~---~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~-------------~~~i  417 (876)
T 4ecn_A          354 FGTHSETVSGRLFG---DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-------------MKPI  417 (876)
T ss_dssp             SCCTTHHHHTTCBT---TBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT-------------SCCC
T ss_pred             eccccccccccccc---ccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc-------------cccc
Confidence            8 777666543210   0000000000     000          000000000000000000             0000


Q ss_pred             hhccCCCCCCeEeCCC--CCCCCCcCccccCCCCCCCEEECcCCcCcc------------------cCCCcC--CCCCCC
Q 047035          145 QGLANLRNLKALNLSW--NGISSGATRLGLGNLTNLEVLDLSANRISG------------------SLTELA--PFRNLK  202 (783)
Q Consensus       145 ~~l~~l~~L~~L~L~~--n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~------------------~~~~l~--~l~~L~  202 (783)
                       .......++.+.+..  |.++++ + ..++++++|++|+|++|.+++                  .++.++  ++++|+
T Consensus       418 -~~~~~l~l~~l~l~~~~N~L~~I-P-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~  494 (876)
T 4ecn_A          418 -KKDSRISLKDTQIGNLTNRITFI-S-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT  494 (876)
T ss_dssp             -CCCCCCCCCTTTTTCCSCEEEEE-C-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred             -ccccccchhhceeccccCcccch-h-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence             011122233333332  445442 2 246666666666666666665                  222433  555555


Q ss_pred             EEEccCccCcccCCcccccCCCCCcEEEccCcc-ccc-cCCccccCCC-------CCCEEEcccccCCccCch--hhcCC
Q 047035          203 VLGMRNNLLNGSVESKGICELKNLTELDLGENN-LEG-QLPWCLSDLI-------GLKVLDISFNHLSGNLPS--VIANL  271 (783)
Q Consensus       203 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l  271 (783)
                      +|++++|.+.+.+| ..++++++|++|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|.  .++++
T Consensus       495 ~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L  572 (876)
T 4ecn_A          495 DVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM  572 (876)
T ss_dssp             EEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred             EEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence            55555555544444 445555555555555554 444 4444333322       5555555555555 4444  45555


Q ss_pred             CCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCC-CCEEE
Q 047035          272 TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD-FKFLD  350 (783)
Q Consensus       272 ~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~-L~~L~  350 (783)
                      ++|++|++++|.+. .+|                          .+..+++|++|++++|.++.+|..+..+++ |+.|+
T Consensus       573 ~~L~~L~Ls~N~l~-~lp--------------------------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          573 VKLGLLDCVHNKVR-HLE--------------------------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             TTCCEEECTTSCCC-BCC--------------------------CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred             CCCCEEECCCCCcc-cch--------------------------hhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence            55555555555544 444                          334445566666677777777777777777 88888


Q ss_pred             ccCCcccCCCChhhhhcC--CCCcEEEccCccccCcccC-C----ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEE
Q 047035          351 LSSNKLVGNFPTWLMQNN--TKLEVLRLSNNSFSGILQL-P----KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYI  423 (783)
Q Consensus       351 Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~-~----~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  423 (783)
                      +++|.+. .+|..+. ..  ++|+.|++++|.+.+..+. +    ...+++|+.|++++|+++ .+|..++..+++|++|
T Consensus       626 Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          626 FSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI  702 (876)
T ss_dssp             CCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred             CcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence            8887777 6665432 22  2367777777776654211 1    113346777777777776 5666665556677777


Q ss_pred             eCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCccc--CCCCccEEEccCc
Q 047035          424 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNN  501 (783)
Q Consensus       424 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n  501 (783)
                      ++++|+++ .+|..+.....                 ....++++|++|++++|+++ .+|..+.  .+++|+.|++++|
T Consensus       703 ~Ls~N~L~-~ip~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          703 ILSNNLMT-SIPENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN  763 (876)
T ss_dssp             ECCSCCCS-CCCTTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS
T ss_pred             ECCCCcCC-ccChHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC
Confidence            77777666 44443222110                 00012235555555555554 3444443  5555555555555


Q ss_pred             ccccccccccccCCCCcEEEccC------CcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccc
Q 047035          502 HFTGKIKAGLLNSHGLVVLDISN------NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL  575 (783)
Q Consensus       502 ~l~~~~~~~l~~~~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  575 (783)
                      .+++ +|..+..+++|+.|++++      |.+.+.+|..++++++|+.|++++|++ +.+|..+.  ++|+.|+|++|++
T Consensus       764 ~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred             CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence            5554 455555555666666655      444445555555555555555555555 34444433  3444555555444


Q ss_pred             c
Q 047035          576 F  576 (783)
Q Consensus       576 ~  576 (783)
                      .
T Consensus       840 ~  840 (876)
T 4ecn_A          840 I  840 (876)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.5e-46  Score=424.44  Aligned_cols=484  Identities=19%  Similarity=0.186  Sum_probs=334.2

Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEcc
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG  232 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  232 (783)
                      ...+.+++.++.++.  .+  .++|++|++++|++++..+ .+..+++|++|++++|.+++..+ ..++.+++|++|+++
T Consensus         8 ~~c~~~~~~l~~ip~--~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            8 GVCDGRSRSFTSIPS--GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLS   82 (549)
T ss_dssp             SEEECTTSCCSSCCS--CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECT
T ss_pred             ceEECCCCccccccc--cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECC
Confidence            345677777776654  23  2678888888888877655 67777888888888887774433 667777778888887


Q ss_pred             CccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccc
Q 047035          233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLR  311 (783)
Q Consensus       233 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~  311 (783)
                      +|.+.+..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+|...+..+++|++|++++|.+..
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            777776666667777777777777777765 3456677777777777777775556665556666666666665555444


Q ss_pred             cCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccC--C-
Q 047035          312 LKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL--P-  388 (783)
Q Consensus       312 ~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~--~-  388 (783)
                      .                       +|..+..+++|++|+++.|.+. .+|.++...+++|++|++++|.+++....  + 
T Consensus       163 ~-----------------------~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  218 (549)
T 2z81_A          163 Y-----------------------QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV  218 (549)
T ss_dssp             E-----------------------CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred             c-----------------------ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccch
Confidence            3                       3444445555555555555543 34444444456666666666665553211  1 


Q ss_pred             ccCCCCccEEEcccCcCCCCCChhhh---hhcCCceEEeCCCCcccccC------CccccCCCCCCeeeccCCcCccccC
Q 047035          389 KVKHDLLRHLDISNNNLTGMLPQNMG---IVIQKLMYIDISKNNFEGNI------PYSIGEMKELFLLDLSRNKFSGDLS  459 (783)
Q Consensus       389 ~~~~~~L~~L~L~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~i~  459 (783)
                      ...+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+..      ...+..+.+|+.|++.++.+.....
T Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~  298 (549)
T 2z81_A          219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL  298 (549)
T ss_dssp             CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred             hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence            13455666666666666543333221   23456777777777665421      1234566777777777776542110


Q ss_pred             ----hhhhhcCCCCcEEECcCccccccCCCcc-cCCCCccEEEccCcccccccc---cccccCCCCcEEEccCCcccccC
Q 047035          460 ----ATSVIRCASLEYLDVSENNFYGHIFPTY-MNLTQLRWLYLKNNHFTGKIK---AGLLNSHGLVVLDISNNLLSGHI  531 (783)
Q Consensus       460 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~  531 (783)
                          ...+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+++..|   ..+..+++|++|++++|.+++..
T Consensus       299 ~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  377 (549)
T 2z81_A          299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ  377 (549)
T ss_dssp             SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred             cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence                112234567888888888875 355544 467888888888888877653   33667788888888888887543


Q ss_pred             C--CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcC
Q 047035          532 P--CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS  609 (783)
Q Consensus       532 p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  609 (783)
                      +  ..++.+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+ .++|++|++++|++++.+    ..+
T Consensus       378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-~~~L~~L~Ls~N~l~~~~----~~l  450 (549)
T 2z81_A          378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-PQTLEVLDVSNNNLDSFS----LFL  450 (549)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-CTTCSEEECCSSCCSCCC----CCC
T ss_pred             cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-cCCceEEECCCCChhhhc----ccC
Confidence            2  45778888888888888888 678788888888999999888863 34333 368999999999998643    478


Q ss_pred             CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       610 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      ++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus       451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            89999999999997 6776 46789999999999999998888899999999999999999998883

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.8e-46  Score=421.62  Aligned_cols=491  Identities=21%  Similarity=0.208  Sum_probs=369.3

Q ss_pred             CCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCE
Q 047035          125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKV  203 (783)
Q Consensus       125 l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~  203 (783)
                      |+...+.+.+++.++.+ |. .+.  ++|++|++++|.++...+. .++++++|++|++++|++++.++ .++.+++|++
T Consensus         4 C~~~~~c~~~~~~l~~i-p~-~~~--~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSI-PS-GLT--AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             ECTTSEEECTTSCCSSC-CS-CCC--TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCceEECCCCccccc-cc-cCC--CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence            34455578888888875 53 343  7999999999999987653 78999999999999999999886 8999999999


Q ss_pred             EEccCccCcccCCcccccCCCCCcEEEccCccccc-cCCccccCCCCCCEEEcccccCCccCc-hhhcCCCCCCEEeCcC
Q 047035          204 LGMRNNLLNGSVESKGICELKNLTELDLGENNLEG-QLPWCLSDLIGLKVLDISFNHLSGNLP-SVIANLTSLEYLALSD  281 (783)
Q Consensus       204 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~  281 (783)
                      |++++|.+++. ++..++.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++
T Consensus        79 L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           79 LDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999999854 44679999999999999999986 357789999999999999998544554 6899999999999999


Q ss_pred             CccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccC---h-hhhcCCCCCEEEccCCccc
Q 047035          282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIP---S-FLLHQYDFKFLDLSSNKLV  357 (783)
Q Consensus       282 n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip---~-~l~~~~~L~~L~Ls~n~l~  357 (783)
                      |.+.+..|. .++.+++|++|+++.+.........+..+++|++|++++|.++.++   . ....+++|+.|++++|.+.
T Consensus       158 n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            999977774 5778888888888776654333222233556666666666555331   1 1123445556666555555


Q ss_pred             CCCChhhh---hcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccc--
Q 047035          358 GNFPTWLM---QNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG--  432 (783)
Q Consensus       358 ~~~p~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--  432 (783)
                      +..+..+.   ..+++|+.+++++|.+.+....+..                  .. .....+++|+.+++.++.+..  
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~------------------~~-~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS------------------ES-DVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC------------------TT-TCCCCCTTCCEEEEESCBCSCGG
T ss_pred             hhHHHHHHHHhhhhcccccccccccccccccccccc------------------ch-hhhhhhcccccccccccccchhh
Confidence            43333221   2344555555555555443221100                  00 001134556666666655432  


Q ss_pred             ---cCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCC---CcccCCCCccEEEccCcccccc
Q 047035          433 ---NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF---PTYMNLTQLRWLYLKNNHFTGK  506 (783)
Q Consensus       433 ---~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~  506 (783)
                         .++..+....+|+.|++++|++. .+|...+..+++|++|++++|++.+.+|   ..+..+++|++|++++|.+++.
T Consensus       298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  376 (549)
T 2z81_A          298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM  376 (549)
T ss_dssp             GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred             hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence               12222344567889999999886 7888777788999999999999887653   3467889999999999999865


Q ss_pred             cc--cccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccC
Q 047035          507 IK--AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN  584 (783)
Q Consensus       507 ~~--~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  584 (783)
                      .+  ..+..+++|++|++++|+++ .+|..++.+++|++|++++|+++ .+|..+.  ++|++|++++|++++.+   ..
T Consensus       377 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---~~  449 (549)
T 2z81_A          377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---LF  449 (549)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC---CC
T ss_pred             ccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc---cc
Confidence            33  45788999999999999998 68888999999999999999987 4554442  68999999999998753   26


Q ss_pred             cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035          585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                      +++|++|++++|+++ .+|. ...+++|++|+|++|++++..|.++..+++|+.|++++|++.+..|
T Consensus       450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            889999999999998 7776 4678999999999999999999999999999999999999988776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-43  Score=412.39  Aligned_cols=506  Identities=22%  Similarity=0.199  Sum_probs=245.4

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCC
Q 047035           75 ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLK  154 (783)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~  154 (783)
                      ++++|||++|.|++..+    .+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+ ..|.++++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCC
T ss_pred             CCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCC
Confidence            56777777777666555    556666777777777776666556666666777777777666665432 3566666666


Q ss_pred             eEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-C-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEcc
Q 047035          155 ALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG  232 (783)
Q Consensus       155 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  232 (783)
                      +|++++|+++.+.+. .++++++|++|++++|.+++.. + .++.+++|++|++++|.++                    
T Consensus       128 ~L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~--------------------  186 (635)
T 4g8a_A          128 KLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ--------------------  186 (635)
T ss_dssp             EEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC--------------------
T ss_pred             EEECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc--------------------
Confidence            666666666655442 4566666666666666655421 2 3444555555555555554                    


Q ss_pred             CccccccCCccccCCCC----CCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035          233 ENNLEGQLPWCLSDLIG----LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS  308 (783)
Q Consensus       233 ~n~l~~~~~~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~  308 (783)
                           +..+..+..+.+    ...++++.|.+....+.. .....++.+++.+|.....++...+..+..++...+..+.
T Consensus       187 -----~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  260 (635)
T 4g8a_A          187 -----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  260 (635)
T ss_dssp             -----EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             -----ccccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence                 333333332222    223444444444322222 2222334444444433333333334444444444332221


Q ss_pred             cc------ccCCCCCCCCccccEEeCCCCCCC----ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccC
Q 047035          309 NL------RLKTENWIPTFQLKVLQLPNCNLK----VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN  378 (783)
Q Consensus       309 ~~------~~~~~~~~~~~~L~~L~L~~~~l~----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~  378 (783)
                      ..      ......+.....+....+..+...    .++..+....+++.+++.++.+                      
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----------------------  318 (635)
T 4g8a_A          261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI----------------------  318 (635)
T ss_dssp             CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE----------------------
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc----------------------
Confidence            10      011111112222222222211111    2222233333444444444443                      


Q ss_pred             ccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCcc--
Q 047035          379 NSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG--  456 (783)
Q Consensus       379 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--  456 (783)
                         ....  .+.....++.|++.+|.+.+..+.    .++.|+.+++..|......  ....+++|+.+++++|.+..  
T Consensus       319 ---~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~  387 (635)
T 4g8a_A          319 ---ERVK--DFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG  387 (635)
T ss_dssp             ---EECG--GGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEE
T ss_pred             ---cccc--ccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCc--ccccccccccchhhcccccccc
Confidence               3331  122233444444444444321111    2334444444444433211  12344455555555554431  


Q ss_pred             ccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcEEEccCCcccccCCCCc
Q 047035          457 DLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWI  535 (783)
Q Consensus       457 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~l  535 (783)
                      ..+. .+..+.+|+++++..|.... .+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+..+..+
T Consensus       388 ~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          388 CCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             ECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             cccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence            1122 12344555555555554443 22334455555555555554443322 234455555555555555555555555


Q ss_pred             CCCCCCcEEECCCCccc-ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCc
Q 047035          536 GNFSYLDVLLMSKNHLE-GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELL  613 (783)
Q Consensus       536 ~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  613 (783)
                      ..+++++.|++++|.+. +..|..|..+++|++|+|++|++++..|..+ ++++|++|+|++|++++..|..|.++++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            55555555555555432 2344555555555555555555555555555 555555666666555555555555556666


Q ss_pred             EEECcCCccccCCchhccCC-cCCCEEeCcCCccc
Q 047035          614 TLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQ  647 (783)
Q Consensus       614 ~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~  647 (783)
                      +|||++|++++..|..+..+ ++|+.|+|++|++.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            66666666655555555555 45666666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.4e-46  Score=429.15  Aligned_cols=340  Identities=18%  Similarity=0.190  Sum_probs=281.6

Q ss_pred             CCCCCccChhhhcCCCCCEEEccCCcccCC-----------------CChhhh-hcCCCCcEEEccCccccCcccCCccC
Q 047035          330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGN-----------------FPTWLM-QNNTKLEVLRLSNNSFSGILQLPKVK  391 (783)
Q Consensus       330 ~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~  391 (783)
                      .|+++.+|..++.+++|++|++++|.+++.                 +|..+. .++++|++|++++|.+.+..+..+..
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            456667888899999999999999998875                 776543 26888999999999888876666788


Q ss_pred             CCCccEEEcccCc-CCC-CCChhhhhh-----cCCceEEeCCCCcccccCCc--cccCCCCCCeeeccCCcCccccChhh
Q 047035          392 HDLLRHLDISNNN-LTG-MLPQNMGIV-----IQKLMYIDISKNNFEGNIPY--SIGEMKELFLLDLSRNKFSGDLSATS  462 (783)
Q Consensus       392 ~~~L~~L~L~~n~-l~~-~~p~~~~~~-----l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~i~~~~  462 (783)
                      +++|++|++++|+ +++ .+|..++..     +++|++|++++|+++ .+|.  .+..+++|+.|++++|+++|.+|  .
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~  348 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--A  348 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence            8899999999998 887 788877531     388999999999998 7888  88899999999999999988888  5


Q ss_pred             hhcCCCCcEEECcCccccccCCCcccCCCC-ccEEEccCcccccccccccccCC--CCcEEEccCCcccccCCCCcC---
Q 047035          463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQ-LRWLYLKNNHFTGKIKAGLLNSH--GLVVLDISNNLLSGHIPCWIG---  536 (783)
Q Consensus       463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~l~---  536 (783)
                      +..+++|++|++++|++. .+|..+..+++ |++|++++|.++ .+|..+...+  +|++|++++|.+.+.+|..+.   
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            678889999999999888 67778888888 999999999988 6777776654  899999999999988888888   


Q ss_pred             ----CCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-C-c-------CCCcEEEccCCcccccCc
Q 047035          537 ----NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-N-L-------SSIMHLYLQNNALSGQIP  603 (783)
Q Consensus       537 ----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~-l-------~~L~~L~L~~n~l~~~~p  603 (783)
                          .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|... . .       ++|++|+|++|+++ .+|
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  504 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS  504 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred             cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence                7788999999999998443344566889999999999988 555543 2 2       28999999999998 788


Q ss_pred             hhhh--cCCCCcEEECcCCccccCCchhccCCcCCCEEeC------cCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          604 STLF--RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL------RGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       604 ~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      ..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|..++.+++|+.|++++|++ +.||
T Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence            8887  88999999999999987 8888888999999998      56778888898899999999999999998 7787


Q ss_pred             cch
Q 047035          676 SCF  678 (783)
Q Consensus       676 ~~~  678 (783)
                      ..+
T Consensus       583 ~~~  585 (636)
T 4eco_A          583 EKI  585 (636)
T ss_dssp             SCC
T ss_pred             HhH
Confidence            754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=408.94  Aligned_cols=456  Identities=22%  Similarity=0.262  Sum_probs=324.1

Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEcc
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG  232 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  232 (783)
                      ++|++++|+++.++.  .+.  ++|++|++++|.+++.++ .+..+++|++|++++|.+++..+ ..++.+++|++|+++
T Consensus         3 ~~l~ls~n~l~~ip~--~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPK--DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSSCCC--SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECC
T ss_pred             ceEecCCCCcccccc--ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecC
Confidence            578899998887654  333  789999999998887776 78888888888888888875444 678888888888888


Q ss_pred             CccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCC--cEEEeccCcc
Q 047035          233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL--EVLLLKVSSN  309 (783)
Q Consensus       233 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L--~~L~l~~~~~  309 (783)
                      +|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+    ..+..+++|  ++|++++|.+
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence            88888 45554  78888888888888876 467888888888888888888764    234555555  6666555543


Q ss_pred             cccCCCCCCCCccccEEeCCCCCCC-ccChhhhcCC-CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCcc-------
Q 047035          310 LRLKTENWIPTFQLKVLQLPNCNLK-VIPSFLLHQY-DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNS-------  380 (783)
Q Consensus       310 ~~~~~~~~~~~~~L~~L~L~~~~l~-~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~-------  380 (783)
                      ..                      . ..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.       
T Consensus       151 ~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          151 YG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             TT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred             cc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence            00                      2 3333333322 233456667776666666555567777777777775       


Q ss_pred             ccCcccCCccCCCCccEEEcccCcCCCCCChhhhh--hcCCceEEeCCCCcccccCCccc-----cCCCCCCeeeccCCc
Q 047035          381 FSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGI--VIQKLMYIDISKNNFEGNIPYSI-----GEMKELFLLDLSRNK  453 (783)
Q Consensus       381 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~  453 (783)
                      +.+..+ .+..+++|+.|++++|.+.+..+..+..  ..++|++|++++|.++|.+|..+     ..+++|+.+++++|.
T Consensus       209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            433322 3456677777777777665433222211  13477788888887777777776     666777777777766


Q ss_pred             CccccChhhhhcC---CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccccc
Q 047035          454 FSGDLSATSVIRC---ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH  530 (783)
Q Consensus       454 l~~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  530 (783)
                      +  .+|...+..+   .+|+.|++++|.+..                        ..  .+..+++|++|++++|.+++.
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~--~~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVH------------------------ML--CPSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCC------------------------CC--CCSSCCCCCEEECCSSCCCTT
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCcccc------------------------cc--chhhCCcccEEEeECCccChh
Confidence            6  4453222222   345555555554432                        11  013456777777777777777


Q ss_pred             CCCCcCCCCCCcEEECCCCcccc--cCcccccCCCCCCEEeCCCcccccccccc-c-CcCCCcEEEccCCcccccCchhh
Q 047035          531 IPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLQLLDLSENRLFGSIASS-L-NLSSIMHLYLQNNALSGQIPSTL  606 (783)
Q Consensus       531 ~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~-~l~~L~~L~L~~n~l~~~~p~~l  606 (783)
                      +|.+++++++|++|++++|++++  .+|..+..+++|++|++++|++.+.+|.. + .+++|++|++++|++++.+|..+
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence            77777777778888888887775  55677888888888888888888756654 4 77888888888888887777766


Q ss_pred             hcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcc-hhCCCCCCEEecCCCcCcccCCc
Q 047035          607 FRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      .  ++|+.|++++|+++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++..|.
T Consensus       420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            4  78999999999997 78888889999999999999999 56665 89999999999999999987763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.9e-43  Score=405.35  Aligned_cols=514  Identities=23%  Similarity=0.222  Sum_probs=312.0

Q ss_pred             CcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCc
Q 047035           40 GQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVL  119 (783)
Q Consensus        40 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~  119 (783)
                      ..++.++|+++.+          ..+.+..|..+++|++|||++|.+++..+    .+|.++++|++|+|++|++++..+
T Consensus        52 ~~~~~LdLs~N~i----------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           52 FSTKNLDLSFNPL----------RHLGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             TTCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECG
T ss_pred             cCCCEEEeeCCCC----------CCCCHHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCCCCCEEEccCCcCCCCCH
Confidence            3688999999876          34666789999999999999999998777    789999999999999999998788


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCC
Q 047035          120 PYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPF  198 (783)
Q Consensus       120 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l  198 (783)
                      ..|+++++|++|+|++|++++..+ ..|+++++|++|++++|.+.....+..++.+++|++|++++|++++..+ .+..+
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence            889999999999999999998755 4799999999999999999886655578899999999999999998766 55544


Q ss_pred             CC----CCEEEccCccCcccCCcccccCCCCCcEEEccCccccc-cCCccccCCCCCCEEEcccccCC------ccCchh
Q 047035          199 RN----LKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG-QLPWCLSDLIGLKVLDISFNHLS------GNLPSV  267 (783)
Q Consensus       199 ~~----L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~------~~~p~~  267 (783)
                      .+    ...++++.|.+.. ++ ........++.+++.+|.... ..+..+..+..++...+..+...      ...+..
T Consensus       197 ~~l~~~~~~~~ls~n~l~~-i~-~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMNF-IQ-PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HTCTTCCCEEECTTCCCCE-EC-TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             hhhhhhhhhhhcccCcccc-cC-cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            33    3467777777753 33 223334456667776665432 22334555666665555433221      111122


Q ss_pred             hcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCC
Q 047035          268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFK  347 (783)
Q Consensus       268 l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~  347 (783)
                      +..+..+....+..+....                      ........+....+++.+.+.++.+..++. +.....++
T Consensus       275 ~~~~~~l~~~~l~~~~~~~----------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~  331 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDY----------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQ  331 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCS----------------------CEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCS
T ss_pred             cccccchhhhhhhhhhhcc----------------------cccchhhhhhhhcccccccccccccccccc-cccchhhh
Confidence            2222233322222211110                      001111223344456666666665554433 34556777


Q ss_pred             EEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCC--CCChhhhhhcCCceEEeC
Q 047035          348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG--MLPQNMGIVIQKLMYIDI  425 (783)
Q Consensus       348 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L  425 (783)
                      .|++.+|.+.+..+.    .+..|+.+++..|.....  .....+++|+.++++.|.+..  ..+.... ...+|+++++
T Consensus       332 ~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~  404 (635)
T 4g8a_A          332 HLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDL  404 (635)
T ss_dssp             EEEEESCEESSCCCC----BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHH-SCSCCCEEEC
T ss_pred             hhhcccccccCcCcc----cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchh-hhhhhhhhhc
Confidence            777777776633322    456677777777765544  333456667777777666542  2233332 4556666666


Q ss_pred             CCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc-
Q 047035          426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT-  504 (783)
Q Consensus       426 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-  504 (783)
                      ..+.... .+..+..+++|+.+++..+......+...+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+. 
T Consensus       405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~  483 (635)
T 4g8a_A          405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  483 (635)
T ss_dssp             CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             ccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence            6665543 33445556666666666555554444444455555555555555555555555555555555555555432 


Q ss_pred             cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccC
Q 047035          505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN  584 (783)
Q Consensus       505 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  584 (783)
                      +..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++                    
T Consensus       484 ~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~--------------------  543 (635)
T 4g8a_A          484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--------------------  543 (635)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT--------------------
T ss_pred             ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC--------------------
Confidence            233444444555555555555555444555555555555555555554444444444444                    


Q ss_pred             cCCCcEEEccCCcccccCchhhhcC-CCCcEEECcCCcccc
Q 047035          585 LSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFG  624 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~  624 (783)
                         |++|+|++|++++..|..+..+ ++|++|+|++|++..
T Consensus       544 ---L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          544 ---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             ---CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             ---CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence               4555555555554455555544 455555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.5e-43  Score=397.55  Aligned_cols=437  Identities=19%  Similarity=0.172  Sum_probs=348.1

Q ss_pred             CEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcC
Q 047035          202 KVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD  281 (783)
Q Consensus       202 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  281 (783)
                      +++++++|.++ .+| ..+.  ++|++|++++|.+.+..|..|..+++|++|++++|++++..|.+|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46777888776 566 3333  7778888888877766666777777888888888877776677777778888888887


Q ss_pred             CccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCc--cChhhhcCCCCCEEEccCCcccCC
Q 047035          282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKV--IPSFLLHQYDFKFLDLSSNKLVGN  359 (783)
Q Consensus       282 n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~--ip~~l~~~~~L~~L~Ls~n~l~~~  359 (783)
                      |.+. .+|..   .+                        ++|++|++++|.++.  +|..+..+++|++|++++|.+.+.
T Consensus        79 N~l~-~lp~~---~l------------------------~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~  130 (520)
T 2z7x_B           79 NKLV-KISCH---PT------------------------VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS  130 (520)
T ss_dssp             SCCC-EEECC---CC------------------------CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG
T ss_pred             Ccee-ecCcc---cc------------------------CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh
Confidence            7776 45532   33                        456666677777764  567888888999999999888752


Q ss_pred             CChhhhhcCCCC--cEEEccCccc--cCcccCCccCCC-CccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCc-----
Q 047035          360 FPTWLMQNNTKL--EVLRLSNNSF--SGILQLPKVKHD-LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN-----  429 (783)
Q Consensus       360 ~p~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-----  429 (783)
                         . +..+++|  ++|++++|.+  .+..+..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.     
T Consensus       131 ---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  206 (520)
T 2z7x_B          131 ---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC  206 (520)
T ss_dssp             ---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred             ---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence               1 2366777  9999999988  444333333322 234678899998888888777789999999999997     


Q ss_pred             --ccccCCccccCCCCCCeeeccCCcCccccChhhhh--cCCCCcEEECcCccccccCCCcc-----cCCCCccEEEccC
Q 047035          430 --FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI--RCASLEYLDVSENNFYGHIFPTY-----MNLTQLRWLYLKN  500 (783)
Q Consensus       430 --l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~  500 (783)
                        +.+.+| .+..+++|+.|++++|.+++..+.....  .+++|++|++++|++.+.+|..+     ..+++|+.+++++
T Consensus       207 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~  285 (520)
T 2z7x_B          207 SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS  285 (520)
T ss_dssp             HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred             ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence              666666 7889999999999999887543332221  24699999999999998899888     8999999999999


Q ss_pred             cccccccc-cccccC---CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccc
Q 047035          501 NHFTGKIK-AGLLNS---HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF  576 (783)
Q Consensus       501 n~l~~~~~-~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  576 (783)
                      |.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+..+++|++|++++|++.
T Consensus       286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  361 (520)
T 2z7x_B          286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK  361 (520)
T ss_dssp             CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred             cce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence            998  455 444444   68999999999987432  1368899999999999999999999999999999999999998


Q ss_pred             c--cccccc-CcCCCcEEEccCCcccccCchh-hhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCc
Q 047035          577 G--SIASSL-NLSSIMHLYLQNNALSGQIPST-LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI  652 (783)
Q Consensus       577 ~--~~p~~~-~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  652 (783)
                      +  .+|..+ .+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|.
T Consensus       362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~  438 (520)
T 2z7x_B          362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK  438 (520)
T ss_dssp             BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred             ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence            7  566667 8999999999999999867765 78889999999999999998888775  79999999999999 8899


Q ss_pred             chhCCCCCCEEecCCCcCcccCCcc-hhhccc
Q 047035          653 ALCQLQKLGILDLSHNKLNGSIPSC-FVNMLF  683 (783)
Q Consensus       653 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~  683 (783)
                      .+..+++|+.|++++|+++ .+|.. +.+++.
T Consensus       439 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  469 (520)
T 2z7x_B          439 QVVKLEALQELNVASNQLK-SVPDGIFDRLTS  469 (520)
T ss_dssp             GGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             hhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence            8899999999999999999 67776 666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-43  Score=412.67  Aligned_cols=465  Identities=18%  Similarity=0.200  Sum_probs=226.6

Q ss_pred             CCCCEEEccCCcCCCCCCchhccCCCCCCeEeC-CCCCCCCCcCccccCCCCCCCE-----EEC----------cCCcCc
Q 047035          126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNL-SWNGISSGATRLGLGNLTNLEV-----LDL----------SANRIS  189 (783)
Q Consensus       126 ~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L-~~n~l~~~~~~~~l~~l~~L~~-----L~L----------s~n~~~  189 (783)
                      .+++.|+|+++.+.|.+|. .++++++|++|+| ++|.+.+..+.........+..     +..          ....+.
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5688888888888888775 7888888888888 7776544322100000000000     000          000000


Q ss_pred             c-----------cCC-CcCCCCCCCEEEccC--ccCcccCCcccccCCCCCcEEEccCccccc-----------------
Q 047035          190 G-----------SLT-ELAPFRNLKVLGMRN--NLLNGSVESKGICELKNLTELDLGENNLEG-----------------  238 (783)
Q Consensus       190 ~-----------~~~-~l~~l~~L~~L~L~~--n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------  238 (783)
                      +           ..+ .......++.+.+..  |.+++ +| ..++++++|++|+|++|.+++                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence            0           000 111122233333332  55555 55 456667777777777777666                 


Q ss_pred             cCCcccc--CCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCc-cce-ecChhhhcCCCCCcEEEeccCcccccCC
Q 047035          239 QLPWCLS--DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN-FQG-EFPLSLLTNHSNLEVLLLKVSSNLRLKT  314 (783)
Q Consensus       239 ~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~  314 (783)
                      .+|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|.. ++.++                 
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~-----------------  541 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLA-----------------  541 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHH-----------------
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhh-----------------
Confidence            3666666  77777777777777777777777777777777777776 665 55543 22111                 


Q ss_pred             CCCCCCccccEEeCCCCCCCccCh--hhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCC
Q 047035          315 ENWIPTFQLKVLQLPNCNLKVIPS--FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH  392 (783)
Q Consensus       315 ~~~~~~~~L~~L~L~~~~l~~ip~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  392 (783)
                      ..+..+++|++|++++|.++.+|.  .+..+++|+.|++++|.+. .+|                          .+..+
T Consensus       542 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--------------------------~~~~L  594 (876)
T 4ecn_A          542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--------------------------AFGTN  594 (876)
T ss_dssp             HCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--------------------------CCCTT
T ss_pred             hcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--------------------------hhcCC
Confidence            011122334444444444444444  4444444444444444444 333                          23334


Q ss_pred             CCccEEEcccCcCCCCCChhhhhhcCC-ceEEeCCCCcccccCCccccCCCC--CCeeeccCCcCccccChhhhhcCCCC
Q 047035          393 DLLRHLDISNNNLTGMLPQNMGIVIQK-LMYIDISKNNFEGNIPYSIGEMKE--LFLLDLSRNKFSGDLSATSVIRCASL  469 (783)
Q Consensus       393 ~~L~~L~L~~n~l~~~~p~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~i~~~~~~~l~~L  469 (783)
                      ++|+.|++++|++. .+|..++ .+++ |++|++++|.++ .+|..+..++.  |+.|++++|++.+.+|...       
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-------  664 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-------  664 (876)
T ss_dssp             SEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-------
T ss_pred             CcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch-------
Confidence            44444444444444 4444432 3444 555555555544 44444433322  4444444444443322100       


Q ss_pred             cEEECcCccccccCCCccc--CCCCccEEEccCcccccccccc-cccCCCCcEEEccCCcccccCCCCcC--------CC
Q 047035          470 EYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAG-LLNSHGLVVLDISNNLLSGHIPCWIG--------NF  538 (783)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~l~--------~l  538 (783)
                                     ..+.  .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+. .+|..+.        ++
T Consensus       665 ---------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl  727 (876)
T 4ecn_A          665 ---------------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT  727 (876)
T ss_dssp             ---------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred             ---------------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence                           0000  1223444444444444 22222 223444444444444444 2232221        12


Q ss_pred             CCCcEEECCCCcccccCccccc--CCCCCCEEeCCCccccccccccc-CcCCCcEEEccC------CcccccCchhhhcC
Q 047035          539 SYLDVLLMSKNHLEGNIPVQIN--NFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN------NALSGQIPSTLFRS  609 (783)
Q Consensus       539 ~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~------n~l~~~~p~~l~~l  609 (783)
                      ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++.+ +|..+ .+++|+.|+|++      |++.+.+|..+.++
T Consensus       728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence            25555555555555 4454444  55555555555555554 34333 455555555544      55555566666666


Q ss_pred             CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035          610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       610 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  670 (783)
                      ++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..++....+..+.+.+|++
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            6666666666665 55555543  4566666666655544444444444444444544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-41  Score=386.26  Aligned_cols=463  Identities=20%  Similarity=0.253  Sum_probs=300.0

Q ss_pred             CCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCc
Q 047035          149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT  227 (783)
Q Consensus       149 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  227 (783)
                      .+...+++++++++++.++.  .+  .++|++|++++|.+++.++ .+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~--~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~  103 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPK--DL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLE  103 (562)
T ss_dssp             ----CCEEECTTSCCCSCCT--TS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCC
T ss_pred             ccCCCcEEEcCCCCCccCCC--CC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCC
Confidence            34445788888888877554  23  2678888888888877665 77778888888888887774434 6677778888


Q ss_pred             EEEccCccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCC--cEEEe
Q 047035          228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL--EVLLL  304 (783)
Q Consensus       228 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L--~~L~l  304 (783)
                      +|++++|+++ .+|..  .+++|++|++++|++++ .+|..|+++++|++|++++|.+.+ ..   +..+++|  ++|++
T Consensus       104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L  176 (562)
T 3a79_B          104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILL  176 (562)
T ss_dssp             EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEE
T ss_pred             EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEe
Confidence            8888888777 45544  67778888888887775 345677777788888887777653 22   3333333  55555


Q ss_pred             ccCcc--cccCCCCCCCCccccEEeCCCCCCCccChhhhcCC-CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccc
Q 047035          305 KVSSN--LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY-DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF  381 (783)
Q Consensus       305 ~~~~~--~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  381 (783)
                      +.|.+  ..                       ..|..+..+. ..-.+++++|.+.+.++......+++|+.+++++|..
T Consensus       177 ~~n~l~~~~-----------------------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          177 DLVSYHIKG-----------------------GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             EESSCCCCS-----------------------SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred             ecccccccc-----------------------cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence            55443  21                       2233333222 1113466666666656555555566777777776631


Q ss_pred             -----cCcccCCccCCCCccEEEcccCcCCCCCChhhh--hhcCCceEEeCCCCcccccCCccc-----cCCCCCCeeec
Q 047035          382 -----SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMG--IVIQKLMYIDISKNNFEGNIPYSI-----GEMKELFLLDL  449 (783)
Q Consensus       382 -----~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L  449 (783)
                           .+.. ..+..++.|+.+++.++.+.+.....+.  ...++|++|++++|.++|.+|..+     ..++.|+.+++
T Consensus       234 ~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~  312 (562)
T 3a79_B          234 NCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV  312 (562)
T ss_dssp             THHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred             ccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence                 1110 1124456666666666655432111110  013467777777777777777665     45555555555


Q ss_pred             cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccc
Q 047035          450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG  529 (783)
Q Consensus       450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~  529 (783)
                      ..+.+  .+|...+..+                     ....+|++|++++|.+....  ....+++|++|++++|.+++
T Consensus       313 ~~~~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          313 KNQVF--LFSKEALYSV---------------------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             EECCC--SSCHHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             cccee--ecChhhhhhh---------------------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCcccc
Confidence            55554  3443222111                     00133455555555443211  11456677777777777777


Q ss_pred             cCCCCcCCCCCCcEEECCCCcccc--cCcccccCCCCCCEEeCCCcccccccccc-c-CcCCCcEEEccCCcccccCchh
Q 047035          530 HIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLQLLDLSENRLFGSIASS-L-NLSSIMHLYLQNNALSGQIPST  605 (783)
Q Consensus       530 ~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~-~l~~L~~L~L~~n~l~~~~p~~  605 (783)
                      .+|..++++++|++|++++|++++  .+|..+..+++|++|++++|++.+.+|.. + .+++|++|++++|++++.+|..
T Consensus       368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  447 (562)
T 3a79_B          368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC  447 (562)
T ss_dssp             TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred             chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence            777777777777777777777775  33566777888888888888887755554 3 7788888888888888777765


Q ss_pred             hhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcc-hhCCCCCCEEecCCCcCcccCCc
Q 047035          606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       606 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      +.  ++|+.|++++|+++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++|.+|.
T Consensus       448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            54  68999999999987 68888889999999999999999 56665 89999999999999999998775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-40  Score=379.81  Aligned_cols=442  Identities=21%  Similarity=0.195  Sum_probs=331.2

Q ss_pred             CCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEE
Q 047035          198 FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYL  277 (783)
Q Consensus       198 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  277 (783)
                      +...++++++++.++ .+|. .+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            334467777777776 3552 222  677777777777776666677777777777777777776667777777777777


Q ss_pred             eCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCcc--ChhhhcCCCCCEEEccCCc
Q 047035          278 ALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVI--PSFLLHQYDFKFLDLSSNK  355 (783)
Q Consensus       278 ~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i--p~~l~~~~~L~~L~Ls~n~  355 (783)
                      ++++|.+. .+|..   .+                        ++|++|++++|.++.+  |..+..+++|++|++++|.
T Consensus       106 ~Ls~N~l~-~lp~~---~l------------------------~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          106 DVSHNRLQ-NISCC---PM------------------------ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             ECTTSCCC-EECSC---CC------------------------TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             ECCCCcCC-ccCcc---cc------------------------ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            77777766 55532   33                        4566666777777754  4678888889999999888


Q ss_pred             ccCCCChhhhhcCCCC--cEEEccCccc--cCcccCCccCCC-CccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCc-
Q 047035          356 LVGNFPTWLMQNNTKL--EVLRLSNNSF--SGILQLPKVKHD-LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN-  429 (783)
Q Consensus       356 l~~~~p~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-  429 (783)
                      +.+...    ..+++|  ++|++++|.+  ++..+..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|. 
T Consensus       158 l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          158 FRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             CCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred             cccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence            875322    244555  9999999988  555333333222 122568889998888887776678899999999985 


Q ss_pred             ----ccccCCccccCCCCCCeeeccCCcCccccChhh--hhcCCCCcEEECcCccccccCCCcc-----cCCCCccEEEc
Q 047035          430 ----FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS--VIRCASLEYLDVSENNFYGHIFPTY-----MNLTQLRWLYL  498 (783)
Q Consensus       430 ----l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L  498 (783)
                          +.+ ....+..+++|+.+++.++.+.+......  ....++|++|++++|.+.+.+|..+     ..++.|+.+++
T Consensus       234 ~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~  312 (562)
T 3a79_B          234 NCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV  312 (562)
T ss_dssp             THHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred             ccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence                222 22356788899999998887764221111  1134599999999999998888877     67777777888


Q ss_pred             cCcccccccc-cccc---cCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcc
Q 047035          499 KNNHFTGKIK-AGLL---NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR  574 (783)
Q Consensus       499 ~~n~l~~~~~-~~l~---~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  574 (783)
                      ..+.+  .+| ..+.   ...+|++|++++|.+....  ..+.+++|++|++++|++++.+|..+.++++|++|++++|+
T Consensus       313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             cccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence            77776  344 2222   2367999999999986332  12688999999999999999999999999999999999999


Q ss_pred             ccc--cccccc-CcCCCcEEEccCCcccccCch-hhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035          575 LFG--SIASSL-NLSSIMHLYLQNNALSGQIPS-TLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI  650 (783)
Q Consensus       575 l~~--~~p~~~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  650 (783)
                      +.+  .+|..+ .+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i  465 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI  465 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence            987  445666 899999999999999986665 478899999999999999988887665  79999999999999 78


Q ss_pred             CcchhCCCCCCEEecCCCcCcccCCcc-hhhcccc
Q 047035          651 PIALCQLQKLGILDLSHNKLNGSIPSC-FVNMLFW  684 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~  684 (783)
                      |..+..+++|+.|++++|+++ .||.. +..++.+
T Consensus       466 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  499 (562)
T 3a79_B          466 PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL  499 (562)
T ss_dssp             CTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred             ChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence            888889999999999999999 67776 7666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-39  Score=358.41  Aligned_cols=409  Identities=22%  Similarity=0.246  Sum_probs=184.8

Q ss_pred             CCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCE
Q 047035          197 PFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY  276 (783)
Q Consensus       197 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  276 (783)
                      +.++|++|++++|.+ +.+| ..++++++|++|++++|.+.+.+|..++.+++|+.+++.+|..           .++++
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~   75 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHE   75 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSE
T ss_pred             ccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCE
Confidence            346677777777777 5666 5577777777777777777777777777666653333333321           23455


Q ss_pred             EeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcc
Q 047035          277 LALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL  356 (783)
Q Consensus       277 L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l  356 (783)
                      |++++|.++ .+|.    ..++|++|++++|.+..++.    ...+|++|++++|.++.+|..   .++|++|++++|++
T Consensus        76 L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           76 LELNNLGLS-SLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL  143 (454)
T ss_dssp             EECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC
T ss_pred             EEecCCccc-cCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC
Confidence            555555554 2332    12344444444444332211    124556666666666655432   14666666666666


Q ss_pred             cCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCc
Q 047035          357 VGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY  436 (783)
Q Consensus       357 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  436 (783)
                      .+ +|.  +..+++|++|++++|.+++++..    ..+|++|++++|++++ +| .+ ..+++|++|++++|.+++ +|.
T Consensus       144 ~~-lp~--~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~-l~-~~-~~l~~L~~L~l~~N~l~~-l~~  212 (454)
T 1jl5_A          144 EK-LPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE-LP-EL-QNLPFLTAIYADNNSLKK-LPD  212 (454)
T ss_dssp             SS-CCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS-CC-CC-TTCTTCCEEECCSSCCSS-CCC
T ss_pred             CC-Ccc--cCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCc-Cc-cc-cCCCCCCEEECCCCcCCc-CCC
Confidence            63 552  33566666666666666654221    2356666666666653 44 22 245666666666666653 333


Q ss_pred             cccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCC
Q 047035          437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHG  516 (783)
Q Consensus       437 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~  516 (783)
                      ..   ++|++|++++|.+. .+|.  +..+++|++|++++|++.+ +|.   .+++|++|++++|.+++ +|..   +++
T Consensus       213 ~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~  278 (454)
T 1jl5_A          213 LP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQS  278 (454)
T ss_dssp             CC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred             Cc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCc
Confidence            21   35666666666665 4553  4456666666666666654 222   13556666666666654 3332   255


Q ss_pred             CcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCC-CCCCEEeCCCcccccccccccCcCCCcEEEccC
Q 047035          517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF-RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQN  595 (783)
Q Consensus       517 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~  595 (783)
                      |++|++++|.+++. |..   .++|+.|++++|++++ ++    .+ ++|++|++++|++.+ +|..  +++|++|++++
T Consensus       279 L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~  346 (454)
T 1jl5_A          279 LTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--PPRLERLIASF  346 (454)
T ss_dssp             CCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCS
T ss_pred             CCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--CCcCCEEECCC
Confidence            66666666665541 111   1456666666666553 11    12 356666666666654 3332  35566666666


Q ss_pred             CcccccCchhhhcCCCCcEEECcCCcccc--CCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc-
Q 047035          596 NALSGQIPSTLFRSTELLTLDLRDNKFFG--RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG-  672 (783)
Q Consensus       596 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g-  672 (783)
                      |+++ .+|.   .+++|++|++++|++++  .+|.++..        ++.|.+.+.+|..   +++|+.||+++|+++| 
T Consensus       347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~  411 (454)
T 1jl5_A          347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREF  411 (454)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------
T ss_pred             Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCcc
Confidence            6665 3444   34556666666666655  45544432        2234455555542   3889999999999998 


Q ss_pred             -cCCcchhhcc
Q 047035          673 -SIPSCFVNML  682 (783)
Q Consensus       673 -~iP~~~~~~~  682 (783)
                       .||+++.++.
T Consensus       412 ~~iP~sl~~L~  422 (454)
T 1jl5_A          412 PDIPESVEDLR  422 (454)
T ss_dssp             -----------
T ss_pred             ccchhhHhhee
Confidence             9999888775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-38  Score=351.36  Aligned_cols=389  Identities=18%  Similarity=0.189  Sum_probs=229.8

Q ss_pred             EEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035          228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS  307 (783)
Q Consensus       228 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~  307 (783)
                      .++.+++.++ .+|. +  .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++      
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~------   83 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII------   83 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE------
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE------
Confidence            4555555554 3443 2  2566667777766666666666667777777777766655555444444443333      


Q ss_pred             cccccCCCCCCCCccccEEeCCCCCCCcc-ChhhhcCCCCCEEEccCCcccCCCChh-hhhcCCCCcEEEccCccccCcc
Q 047035          308 SNLRLKTENWIPTFQLKVLQLPNCNLKVI-PSFLLHQYDFKFLDLSSNKLVGNFPTW-LMQNNTKLEVLRLSNNSFSGIL  385 (783)
Q Consensus       308 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~l~~~~  385 (783)
                                        |++++|.++.+ |..+..+++|++|++++|.+.+.+|.. .+..+++|++|++++|.+.+..
T Consensus        84 ------------------L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  145 (455)
T 3v47_A           84 ------------------LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ  145 (455)
T ss_dssp             ------------------EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC
T ss_pred             ------------------EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC
Confidence                              33444444422 445566667777777777776543332 1224555555555555555443


Q ss_pred             cCC-ccCCCCccEEEcccCcCCCCCChhhhhhc--CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhh
Q 047035          386 QLP-KVKHDLLRHLDISNNNLTGMLPQNMGIVI--QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS  462 (783)
Q Consensus       386 ~~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~  462 (783)
                      +.. +..+++|++|++++|++++..|..+. .+  .+|+.|++++|.+.+..+..+..                .. ...
T Consensus       146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~-~~~  207 (455)
T 3v47_A          146 PASFFLNMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGW----------------EK-CGN  207 (455)
T ss_dssp             CCGGGGGCTTCCEEECTTCCBSCCCTTTSG-GGTTCEEEEEECTTCBCTTCSTTCTTH----------------HH-HCC
T ss_pred             cccccCCCCcccEEeCCCCcccccChhhhh-ccccccccccccccCcccccchhhccc----------------cc-ccc
Confidence            222 34445555555555555444443332 11  34444444444444322211110                00 000


Q ss_pred             hhcCCCCcEEECcCccccccCCCcccC---CCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCC--
Q 047035          463 VIRCASLEYLDVSENNFYGHIFPTYMN---LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN--  537 (783)
Q Consensus       463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~--  537 (783)
                      +..+++|++|++++|++.+..+..+..   .++|+.|++++|...+...              ..+.+.+..+..+..  
T Consensus       208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~  273 (455)
T 3v47_A          208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLE  273 (455)
T ss_dssp             TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGT
T ss_pred             ccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccccccccc
Confidence            012233444444444333333222221   1344444444443322110              011111112222222  


Q ss_pred             CCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035          538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD  616 (783)
Q Consensus       538 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  616 (783)
                      .++|+.|++++|++++.+|..+..+++|++|++++|++.+..|..+ .+++|++|++++|.+++..|..+.++++|++|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            2567777777777777777777777777888888887777777666 778888888888888877788889999999999


Q ss_pred             CcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          617 LRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       617 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      |++|++.+..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999988899999999999999999999977677789999999999999999999984

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-38  Score=348.20  Aligned_cols=362  Identities=22%  Similarity=0.233  Sum_probs=248.2

Q ss_pred             ccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCC
Q 047035          218 KGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS  297 (783)
Q Consensus       218 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~  297 (783)
                      ..++++++|++|++++|.+.+. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+.+ ++   ++.++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~  106 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLT  106 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence            3466677777777777777753 4 567777777777777777653 3  6677777777777777663 33   44455


Q ss_pred             CCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEcc
Q 047035          298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS  377 (783)
Q Consensus       298 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  377 (783)
                      +|++|++                        ++|.++.+|  +..+++|++|++++|++.+ ++   ...+++|++|+++
T Consensus       107 ~L~~L~L------------------------~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~  156 (457)
T 3bz5_A          107 KLTYLNC------------------------DTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCH  156 (457)
T ss_dssp             TCCEEEC------------------------CSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECT
T ss_pred             cCCEEEC------------------------CCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECC
Confidence            5555444                        444444443  4455556666666665554 22   2255666666666


Q ss_pred             CccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 047035          378 NNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD  457 (783)
Q Consensus       378 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  457 (783)
                      +|...+.  .++..+++|++|++++|++++ +|  + ..+++|++|++++|++++.   .+..+++|+.|++++|++++ 
T Consensus       157 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          157 LNKKITK--LDVTPQTQLTTLDCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             TCSCCCC--CCCTTCTTCCEEECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred             CCCcccc--cccccCCcCCEEECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence            6643332  244556667777777776664 44  2 3466777777777777653   36677777777777777774 


Q ss_pred             cChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCC
Q 047035          458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN  537 (783)
Q Consensus       458 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~  537 (783)
                      +|   +..+++|++|++++|++++..   ...+++|+.|++++|              +|+.|++++|.+.+.+|  ++.
T Consensus       227 ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~  284 (457)
T 3bz5_A          227 ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG  284 (457)
T ss_dssp             CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred             cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence            55   456777777777777777642   345667777776654              45667777787777766  467


Q ss_pred             CCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEEC
Q 047035          538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDL  617 (783)
Q Consensus       538 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  617 (783)
                      +++|+.|++++|...+.+|.   ...+|+.|++++|            ++|++|++++|++++ ++  +.++++|+.|++
T Consensus       285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l  346 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSC  346 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEEC
T ss_pred             cccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc--cccCCcCcEEEC
Confidence            78888888888887777774   3456777777665            579999999999997 44  889999999999


Q ss_pred             cCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhc
Q 047035          618 RDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM  681 (783)
Q Consensus       618 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  681 (783)
                      ++|++++        ++.|+.|++++|.+.|.     +++..|+.+++++|+++|.||+.+...
T Consensus       347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~  397 (457)
T 3bz5_A          347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ  397 (457)
T ss_dssp             CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred             CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence            9999986        35677788999999986     356678889999999999999976543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.6e-38  Score=347.12  Aligned_cols=427  Identities=22%  Similarity=0.218  Sum_probs=252.0

Q ss_pred             CCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEE
Q 047035          174 NLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVL  253 (783)
Q Consensus       174 ~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  253 (783)
                      +.++|++|++++|.+...+++++++++|++|++++|.+.|.+| ..++++++|+.+++.+|..           .++++|
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc-----------cCCCEE
Confidence            4689999999999995444499999999999999999998888 6788888764444433321           234444


Q ss_pred             EcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCC
Q 047035          254 DISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL  333 (783)
Q Consensus       254 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l  333 (783)
                      ++++|.+++ +|..   .++|++|++++|.+.+ +|.    ..++|+.|++++|.+..+...    .++|++|++++|.+
T Consensus        77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL  143 (454)
T ss_dssp             ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCC
T ss_pred             EecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCC
Confidence            444444442 2221   2344444444444442 332    124445555544444322211    14677888888888


Q ss_pred             CccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhh
Q 047035          334 KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNM  413 (783)
Q Consensus       334 ~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  413 (783)
                      +.+| .+..+++|++|++++|++.+ +|..    .++|++|++++|.+++++  .+..+++|++|++++|++++ +|.. 
T Consensus       144 ~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~-  213 (454)
T 1jl5_A          144 EKLP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL-  213 (454)
T ss_dssp             SSCC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred             CCCc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC-
Confidence            8877 47888888888888888874 6642    358899999999888863  46788899999999999884 5542 


Q ss_pred             hhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCc
Q 047035          414 GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQL  493 (783)
Q Consensus       414 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  493 (783)
                         .++|++|++++|.++ .+| .+..+++|++|++++|+++ .+|.    ..++|++|++++|++.+ +|..   +++|
T Consensus       214 ---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L  279 (454)
T 1jl5_A          214 ---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSL  279 (454)
T ss_dssp             ---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred             ---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcC
Confidence               358999999999988 677 4889999999999999998 4554    24789999999999887 4443   4789


Q ss_pred             cEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035          494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN  573 (783)
Q Consensus       494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  573 (783)
                      ++|++++|.+++. +..   .++|++|++++|.+++ ++..   .++|++|++++|++++ +|..   +++|++|++++|
T Consensus       280 ~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N  347 (454)
T 1jl5_A          280 TFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN  347 (454)
T ss_dssp             CEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             CEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence            9999999999862 221   3689999999999985 2221   2589999999999986 6654   588999999999


Q ss_pred             ccccccccccCcCCCcEEEccCCcccc--cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc--c
Q 047035          574 RLFGSIASSLNLSSIMHLYLQNNALSG--QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG--Q  649 (783)
Q Consensus       574 ~l~~~~p~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~  649 (783)
                      +++ .+|.  .+++|++|++++|++++  .+|.++..        ++.|.+.+.+|..   +++|+.|++++|++++  .
T Consensus       348 ~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~  413 (454)
T 1jl5_A          348 HLA-EVPE--LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPD  413 (454)
T ss_dssp             CCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC------------------------------
T ss_pred             ccc-cccc--hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCcccc
Confidence            998 4666  57899999999999998  67776543        3457788888874   5789999999999997  6


Q ss_pred             CCcchhCCCCCCEEecCCCcCcccCCcchhhc
Q 047035          650 IPIALCQLQKLGILDLSHNKLNGSIPSCFVNM  681 (783)
Q Consensus       650 ~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  681 (783)
                      +|.      +++.|++.+|.+.+.+|.+....
T Consensus       414 iP~------sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          414 IPE------SVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             --------------------------------
T ss_pred             chh------hHhheeCcCcccCCccccCHHHh
Confidence            774      45677899999999888766544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.7e-37  Score=338.78  Aligned_cols=379  Identities=21%  Similarity=0.218  Sum_probs=204.1

Q ss_pred             EEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-C-CcCCCCCCCEEEcc
Q 047035          130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T-ELAPFRNLKVLGMR  207 (783)
Q Consensus       130 ~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L~  207 (783)
                      .++.+++.++.. |.  +  .++|++|++++|.+++..+. .++++++|++|++++|.+.+.+ + .+..+++|++|+++
T Consensus        14 ~~~c~~~~l~~l-p~--l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           14 NAICINRGLHQV-PE--L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             EEECCSSCCSSC-CC--C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccCcCCCCcccC-CC--C--CCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            455555555443 31  1  14556666666655554332 4555555666666555554322 2 45555555555555


Q ss_pred             CccCcccCCcccccCCCCCcEEEccCccccccCCcc--ccCCCCCCEEEcccccCCccCchh-hcCCCCCCEEeCcCCcc
Q 047035          208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC--LSDLIGLKVLDISFNHLSGNLPSV-IANLTSLEYLALSDNNF  284 (783)
Q Consensus       208 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  284 (783)
                      +|.+++..+ ..++++++|++|++++|.+.+..+..  +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus        88 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECT-TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccCh-hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            555543333 44555555555555555555433322  555555555555555555444443 45555555555555555


Q ss_pred             ceecChhhhcCCCCCcEEEeccCcccccCCCCCCCC--ccccEEeCCCCCCCccChh---------hhcCCCCCEEEccC
Q 047035          285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT--FQLKVLQLPNCNLKVIPSF---------LLHQYDFKFLDLSS  353 (783)
Q Consensus       285 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~L~~~~l~~ip~~---------l~~~~~L~~L~Ls~  353 (783)
                      .+                         .....+..+  .+++.+++++|.+..++..         +..+++|++|++++
T Consensus       167 ~~-------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  221 (455)
T 3v47_A          167 KS-------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG  221 (455)
T ss_dssp             SC-------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred             cc-------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence            43                         333222222  4566667777766654432         23445677777777


Q ss_pred             CcccCCCChhhhhc--CCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCccc
Q 047035          354 NKLVGNFPTWLMQN--NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFE  431 (783)
Q Consensus       354 n~l~~~~p~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  431 (783)
                      |.+.+..|..+...  .++|+.|++++|...+.. .             ..+.+.+                        
T Consensus       222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-------------~~~~~~~------------------------  263 (455)
T 3v47_A          222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-F-------------GHTNFKD------------------------  263 (455)
T ss_dssp             SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-T-------------TCCSSCC------------------------
T ss_pred             CcccccchhhhhccccccceeeEeeccccccccc-c-------------chhhhcc------------------------
Confidence            77776666655422  255566666555443321 0             0011110                        


Q ss_pred             ccCCcccc--CCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccccc
Q 047035          432 GNIPYSIG--EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA  509 (783)
Q Consensus       432 ~~~p~~l~--~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  509 (783)
                       ..+..+.  ..++|+.|++++|.+.+..| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+.
T Consensus       264 -~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          264 -PDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             -CCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             -CcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence             1111111  12345555555555543222 2234555555555555555555555566666666666666666665566


Q ss_pred             ccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccc
Q 047035          510 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA  580 (783)
Q Consensus       510 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  580 (783)
                      .+..+++|++|++++|.+++..|.+++++++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            66666777777777777776667777777777777777777776555566677777777777777776655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=327.67  Aligned_cols=169  Identities=26%  Similarity=0.275  Sum_probs=116.9

Q ss_pred             cccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCC
Q 047035           96 DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNL  175 (783)
Q Consensus        96 ~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  175 (783)
                      ..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |   ++++++|++|++++|.+++.    .++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~----~~~~l  105 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL----DVTPL  105 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC----CCTTC
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee----ecCCC
Confidence            4566778888888888887753 3 577788888888888887775 2   67777888888888877764    26677


Q ss_pred             CCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEc
Q 047035          176 TNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI  255 (783)
Q Consensus       176 ~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  255 (783)
                      ++|++|++++|++++.  .++.+++|++|++++|.+++ ++   ++.+++|++|++++|...+.+  .+..+++|++|++
T Consensus       106 ~~L~~L~L~~N~l~~l--~~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TTCCEEECCSSCCSCC--CCTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCee--cCCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            7788888887777764  26677777777777777764 22   666777777777777544444  3566666777777


Q ss_pred             ccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035          256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       256 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      ++|++++ +|  +..+++|++|++++|.++
T Consensus       178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          178 SFNKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             CCCccce-ec--cccCCCCCEEECcCCcCC
Confidence            7776664 33  556666666666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.2e-35  Score=325.86  Aligned_cols=345  Identities=23%  Similarity=0.278  Sum_probs=241.9

Q ss_pred             CCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEE
Q 047035          271 LTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLD  350 (783)
Q Consensus       271 l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~  350 (783)
                      +++++.|++.++.+. .+|.  +..+++                        |++|++++|.++.++. +..+++|++|+
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~------------------------L~~L~Ls~n~l~~~~~-~~~l~~L~~L~   96 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNN------------------------LTQINFSNNQLTDITP-LKNLTKLVDIL   96 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTT------------------------CCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcC------------------------CCEEECCCCccCCchh-hhccccCCEEE
Confidence            456667777766655 3442  444444                        4555555555555554 55666666666


Q ss_pred             ccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcc
Q 047035          351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF  430 (783)
Q Consensus       351 Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  430 (783)
                      +++|.+.+..+   +.++++|++|++++|.+++..  ++..+++|++|++++|.+.+ ++. + ..+++|++|+++ |.+
T Consensus        97 l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~-~~~  167 (466)
T 1o6v_A           97 MNNNQIADITP---LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD-ISA-L-SGLTSLQQLSFG-NQV  167 (466)
T ss_dssp             CCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECC-CGG-G-TTCTTCSEEEEE-ESC
T ss_pred             CCCCccccChh---hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCC-Chh-h-ccCCcccEeecC-Ccc
Confidence            66666653332   235666666666666666653  25566667777777766653 332 2 356677777775 333


Q ss_pred             cccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccc
Q 047035          431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAG  510 (783)
Q Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  510 (783)
                      .+..  .+..+++|+.|++++|.+.+ ++  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..
T Consensus       168 ~~~~--~~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  238 (466)
T 1o6v_A          168 TDLK--PLANLTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT  238 (466)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cCch--hhccCCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hh
Confidence            3222  26677777777777777763 33  25677788888888887776544  56677888888888887743  34


Q ss_pred             cccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcE
Q 047035          511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMH  590 (783)
Q Consensus       511 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~  590 (783)
                      +..+++|++|++++|.+.+..|  +..+++|+.|++++|++++..+  +..+++|++|++++|++.+..+ ...+++|++
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~  313 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTY  313 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence            6778888888888888876554  7788888888888888886544  7788888888888888876544 337888888


Q ss_pred             EEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035          591 LYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       591 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  670 (783)
                      |++++|++++..|  +..+++|+.|++++|++.+.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            8998888886655  67888999999999988765  468888999999999999987776  78889999999999988


Q ss_pred             cc
Q 047035          671 NG  672 (783)
Q Consensus       671 ~g  672 (783)
                      ++
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            87

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.5e-34  Score=319.62  Aligned_cols=346  Identities=24%  Similarity=0.274  Sum_probs=255.5

Q ss_pred             CCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccE
Q 047035          246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKV  325 (783)
Q Consensus       246 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  325 (783)
                      .+++++.|++.++.+.. +| .+..+++|++|++++|.+.+ ++.  +..+++|++|++++|                  
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n------------------  100 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNN------------------  100 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSS------------------
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCC------------------
Confidence            45789999999999984 55 48899999999999999884 443  667776666665544                  


Q ss_pred             EeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcC
Q 047035          326 LQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNL  405 (783)
Q Consensus       326 L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  405 (783)
                            .+..++. +..+++|++|++++|.+.+. +.  +..+++|++|++++|.+.+..  .+..+++|++|+++ |.+
T Consensus       101 ------~l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~  167 (466)
T 1o6v_A          101 ------QIADITP-LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQV  167 (466)
T ss_dssp             ------CCCCCGG-GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESC
T ss_pred             ------ccccChh-hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-Ccc
Confidence                  4444444 55556666666666665532 22  235666666666666666552  34566677777775 344


Q ss_pred             CCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCC
Q 047035          406 TGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP  485 (783)
Q Consensus       406 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  485 (783)
                      .+ ++. + ..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+   +..+++|++|++++|++.+.  +
T Consensus       168 ~~-~~~-~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~  237 (466)
T 1o6v_A          168 TD-LKP-L-ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--G  237 (466)
T ss_dssp             CC-CGG-G-TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--G
T ss_pred             cC-chh-h-ccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--h
Confidence            32 222 2 3567777777777777643  346777888888888888775433   45678888888888887763  4


Q ss_pred             cccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCC
Q 047035          486 TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL  565 (783)
Q Consensus       486 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  565 (783)
                      .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence            57778888888888888876554  7778888888888888886544  7788889999999998886544  7788899


Q ss_pred             CEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035          566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY  645 (783)
Q Consensus       566 ~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  645 (783)
                      ++|++++|++.+..| ...+++|++|++++|++++.  ..+.++++|+.|++++|++.+..|  +..+++|+.|++++|.
T Consensus       312 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             SEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             CEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            999999999887666 33788999999999998854  468889999999999999988777  8889999999999999


Q ss_pred             ccc
Q 047035          646 LQG  648 (783)
Q Consensus       646 l~~  648 (783)
                      +++
T Consensus       387 ~~~  389 (466)
T 1o6v_A          387 WTN  389 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=321.08  Aligned_cols=351  Identities=19%  Similarity=0.163  Sum_probs=247.5

Q ss_pred             cEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccC
Q 047035          324 KVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN  403 (783)
Q Consensus       324 ~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n  403 (783)
                      +.++.+++.++.+|..+.  ++++.|++++|.+.+..+..+ ..+++|++|++++|.++++.+..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            467778888888886543  578888888888875544444 37788888888888887776666677788888888888


Q ss_pred             cCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccC
Q 047035          404 NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHI  483 (783)
Q Consensus       404 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  483 (783)
                      +++ .+|...+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|++.+..
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccC
Confidence            776 4555444567788888888888877777777778888888888887763 44444567777888888887777655


Q ss_pred             CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCC
Q 047035          484 FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR  563 (783)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  563 (783)
                      +..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            55677777788888888777776666777777788888877777766766666666777777777777755445677777


Q ss_pred             CCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCc
Q 047035          564 QLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR  642 (783)
Q Consensus       564 ~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  642 (783)
                      +|++|+|++|++.+..+..+ .+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            77777777777776666666 77777777777777777777777777777777777777776666667777777777777


Q ss_pred             CCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhh
Q 047035          643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN  680 (783)
Q Consensus       643 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  680 (783)
                      +|.+.+.-+. ..-......+++.++.....-|..+..
T Consensus       329 ~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~~g  365 (477)
T 2id5_A          329 SNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFVQG  365 (477)
T ss_dssp             SSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGGTT
T ss_pred             CCCccCccch-HhHHhhhhccccCccCceeCCchHHcC
Confidence            7777644321 111122333444555544444544433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=318.53  Aligned_cols=320  Identities=20%  Similarity=0.161  Sum_probs=163.7

Q ss_pred             EEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCC
Q 047035          348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK  427 (783)
Q Consensus       348 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~  427 (783)
                      .++.+++.+. .+|..+.   ++++.|++++|.++++.+..+..+++|++|++++|.+++..|..+. .+++|++|++++
T Consensus        15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCC
Confidence            4444444444 3443221   3455555555555554444445555555555555555533333332 455555555555


Q ss_pred             CcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccc
Q 047035          428 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI  507 (783)
Q Consensus       428 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  507 (783)
                      |.+++..+..|.++++|++|++++|++.+. +...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            555543334445555555555555555422 2223345555555555555555544445555555555555555555444


Q ss_pred             ccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcC
Q 047035          508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLS  586 (783)
Q Consensus       508 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~  586 (783)
                      +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|++|++++|++.+..+..+ .++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            4445555555555555555555555555555555555555555544444444444455555555555543222333 455


Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035          587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS  666 (783)
Q Consensus       587 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  666 (783)
                      +|++|+|++|.+++..+..|.++++|+.|+|++|++.+..|..+..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            55555555555554444455555555555555555555555555555555555555555554444444555555555555


Q ss_pred             CCcCccc
Q 047035          667 HNKLNGS  673 (783)
Q Consensus       667 ~N~l~g~  673 (783)
                      +|++.+.
T Consensus       329 ~N~l~c~  335 (477)
T 2id5_A          329 SNPLACD  335 (477)
T ss_dssp             SSCEECS
T ss_pred             CCCccCc
Confidence            5555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.6e-35  Score=306.37  Aligned_cols=273  Identities=26%  Similarity=0.407  Sum_probs=234.1

Q ss_pred             CCCCcCCCCCCCCcc--cceeEecCCC--CcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCC-CCCCCC
Q 047035           15 ILTSWVDDGISDCCD--WERVTCDATA--GQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSG-NYFDGW   89 (783)
Q Consensus        15 ~~~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~   89 (783)
                      .+++|..+  +|||.  |.||+|+...  ++|+.++++++.+        .+...-+..|..+++|++|++++ |.+.+.
T Consensus        23 ~l~~W~~~--~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--------~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~   92 (313)
T 1ogq_A           23 TLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--------PKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             GGTTCCTT--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--------SSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             cccCCCCC--CCCCcCCCcceEeCCCCCCceEEEEECCCCCc--------cCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence            68999754  68998  9999998654  8999999999876        22112345789999999999995 888888


Q ss_pred             CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCc
Q 047035           90 NENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATR  169 (783)
Q Consensus        90 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~  169 (783)
                      .|    ..++++++|++|+|++|.+++.+|..++.+++|++|++++|.+.+.+|. .+.++++|++|++++|.+++..+.
T Consensus        93 ~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~  167 (313)
T 1ogq_A           93 IP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             CC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCG
T ss_pred             CC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCH
Confidence            77    7789999999999999999988999999999999999999999988775 799999999999999999865553


Q ss_pred             cccCCCC-CCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCC
Q 047035          170 LGLGNLT-NLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL  247 (783)
Q Consensus       170 ~~l~~l~-~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  247 (783)
                       .++.++ +|++|++++|++++..+ .+..++ |++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. +..+
T Consensus       168 -~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l  243 (313)
T 1ogq_A          168 -SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK-VGLS  243 (313)
T ss_dssp             -GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred             -HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence             688887 99999999999997766 777777 9999999999987665 7889999999999999999876665 8889


Q ss_pred             CCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035          248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS  308 (783)
Q Consensus       248 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~  308 (783)
                      ++|++|++++|.+++.+|.++..+++|++|++++|+++|.+|..  ..+++|+.+++++|+
T Consensus       244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            99999999999999899999999999999999999999888853  666777766666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.5e-33  Score=292.71  Aligned_cols=250  Identities=28%  Similarity=0.420  Sum_probs=173.4

Q ss_pred             CceEEeCCCCcccc--cCCccccCCCCCCeeeccC-CcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccE
Q 047035          419 KLMYIDISKNNFEG--NIPYSIGEMKELFLLDLSR-NKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW  495 (783)
Q Consensus       419 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  495 (783)
                      +++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|.. +..+++|++|++++|++.+.+|..+..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            45555555555555  5555556666666666663 5555555543 345666666666666666556666666666666


Q ss_pred             EEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCC-CCcEEECCCCcccccCcccccCCCCCCEEeCCCcc
Q 047035          496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS-YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR  574 (783)
Q Consensus       496 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  574 (783)
                      |++++|.+++.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            66666666666666666666677777777766666666666666 677777777777766777666665 7777777777


Q ss_pred             ccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcc
Q 047035          575 LFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA  653 (783)
Q Consensus       575 l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  653 (783)
                      +.+.+|..+ .+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|.++..+++|+.|++++|+++|.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            776666666 677777777777777755554 667788888888888888888888888888888888888888888875


Q ss_pred             hhCCCCCCEEecCCCc-Ccc
Q 047035          654 LCQLQKLGILDLSHNK-LNG  672 (783)
Q Consensus       654 l~~l~~L~~L~ls~N~-l~g  672 (783)
                       +.+++|+.+++++|+ +.|
T Consensus       288 -~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -TTGGGSCGGGTCSSSEEES
T ss_pred             -ccccccChHHhcCCCCccC
Confidence             778888888888887 555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=285.93  Aligned_cols=305  Identities=23%  Similarity=0.310  Sum_probs=207.6

Q ss_pred             cCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCce
Q 047035          342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLM  421 (783)
Q Consensus       342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  421 (783)
                      .+++|+.|+++++.+. .++.  ...+++|++|++++|.+++...  +..+++|++|++++|.+++ +| .+ ..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~-~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-AL-QNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GG-TTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HH-cCCCcCC
Confidence            3444555555555444 2332  2245555555555555555432  4455666666666665552 33 22 3566666


Q ss_pred             EEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCc
Q 047035          422 YIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN  501 (783)
Q Consensus       422 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (783)
                      +|++++|.+.+. +. +..+++|+.|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            666666666532 22 66667777777777755434433  4567777777777777665332  667777777777777


Q ss_pred             ccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccc
Q 047035          502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIAS  581 (783)
Q Consensus       502 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  581 (783)
                      .+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|++.+ ++.
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~  260 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INA  260 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Chh
Confidence            7764333  6677788888888887775444  6777888888888888875433  7788888888888888875 343


Q ss_pred             ccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCC
Q 047035          582 SLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG  661 (783)
Q Consensus       582 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  661 (783)
                      ...+++|++|++++|++++ + ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++++..|  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             HhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            3378888888888888875 3 457888999999999999988888889999999999999999987666  88899999


Q ss_pred             EEecCCCcCc
Q 047035          662 ILDLSHNKLN  671 (783)
Q Consensus       662 ~L~ls~N~l~  671 (783)
                      .||+++|+++
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.8e-32  Score=292.12  Aligned_cols=310  Identities=19%  Similarity=0.210  Sum_probs=215.2

Q ss_pred             CCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceE
Q 047035          343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMY  422 (783)
Q Consensus       343 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  422 (783)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.++.+..+..+++|++|++++|.+++..|..+ ..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCE
Confidence            345666666666654 4555544566666666666666666554455666677777777777664434333 35667777


Q ss_pred             EeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc
Q 047035          423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH  502 (783)
Q Consensus       423 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  502 (783)
                      |++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|++++.   .+..+++|+.|++++|.
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            777777776433334566777777777777776 34444456677777777777776653   24556777777777776


Q ss_pred             cccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccc
Q 047035          503 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS  582 (783)
Q Consensus       503 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  582 (783)
                      +++     +...++|++|++++|.+... |..  ..++|+.|++++|.+++.  ..+..+++|++|++++|++.+..|..
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            653     22345677788888777644 322  246788888888888753  46777888888888888888777777


Q ss_pred             c-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCC
Q 047035          583 L-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG  661 (783)
Q Consensus       583 ~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  661 (783)
                      + .+++|++|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|++++. |  +..+++|+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~  342 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK  342 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred             ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence            7 78888888888888874 5666677888999999999886 5677788888999999999998744 3  67788999


Q ss_pred             EEecCCCcCccc
Q 047035          662 ILDLSHNKLNGS  673 (783)
Q Consensus       662 ~L~ls~N~l~g~  673 (783)
                      .|++++|++.+.
T Consensus       343 ~L~l~~N~~~~~  354 (390)
T 3o6n_A          343 NLTLSHNDWDCN  354 (390)
T ss_dssp             EEECCSSCEEHH
T ss_pred             EEEcCCCCccch
Confidence            999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.2e-32  Score=292.36  Aligned_cols=309  Identities=22%  Similarity=0.230  Sum_probs=245.3

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCC
Q 047035           72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLR  151 (783)
Q Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~  151 (783)
                      .++++++|+++++.+...++    ..+..+++|++|+|++|.+++..+..++.+++|++|+|++|.+.+..| ..+++++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred             ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCC
Confidence            46899999999998876654    557889999999999999988777889999999999999999998765 4789999


Q ss_pred             CCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEE
Q 047035          152 NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD  230 (783)
Q Consensus       152 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  230 (783)
                      +|++|++++|.+...+.. .++++++|++|++++|.+++..+ .+..+++|++|++++|.+++ +   .+..+++|++|+
T Consensus       118 ~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~  192 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHAN  192 (390)
T ss_dssp             TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEE
T ss_pred             CCCEEECCCCccCcCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceee
Confidence            999999999999976653 57889999999999999988777 68999999999999999874 2   366789999999


Q ss_pred             ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035          231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL  310 (783)
Q Consensus       231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~  310 (783)
                      +++|.+.+     +...++|++|++++|.+... |..  ..++|++|++++|.+.+. +  .+..+++|++|++++|.+.
T Consensus       193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          193 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-A--WLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             CCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCC
T ss_pred             cccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-H--HHcCCCCccEEECCCCcCC
Confidence            99998874     33456899999999998744 432  357899999999998843 3  4778888888888888877


Q ss_pred             ccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCcc
Q 047035          311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKV  390 (783)
Q Consensus       311 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  390 (783)
                      ......+..+++|++|++++|.++.+|.....+++|++|++++|++. .+|..+. .+++|++|++++|.++..   +..
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~---~~~  336 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLS  336 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCC
T ss_pred             CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee---Cch
Confidence            77667777778888888888888877776667778888888888776 4555543 567777777777776654   344


Q ss_pred             CCCCccEEEcccCcCC
Q 047035          391 KHDLLRHLDISNNNLT  406 (783)
Q Consensus       391 ~~~~L~~L~L~~n~l~  406 (783)
                      .+++|++|++++|++.
T Consensus       337 ~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TTCCCSEEECCSSCEE
T ss_pred             hhccCCEEEcCCCCcc
Confidence            5566666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.6e-31  Score=280.61  Aligned_cols=288  Identities=26%  Similarity=0.308  Sum_probs=207.1

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhc
Q 047035           68 SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL  147 (783)
Q Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l  147 (783)
                      ..+..+++|++|+++++.+...      +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +  .+
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~--~~  106 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S--AL  106 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GG
T ss_pred             ccchhcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h--HH
Confidence            4456788999999999988654      347789999999999999886433  88999999999999998875 3  58


Q ss_pred             cCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCc
Q 047035          148 ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT  227 (783)
Q Consensus       148 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  227 (783)
                      .++++|++|++++|.+.....   +..+++|++|++++|.....++.+..+++|++|++++|.+.+. +  .+..+++|+
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~--~~~~l~~L~  180 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-T--PIANLTDLY  180 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCS
T ss_pred             cCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-h--hhccCCCCC
Confidence            999999999999999887653   7889999999999997666666788899999999999988643 2  277889999


Q ss_pred             EEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035          228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS  307 (783)
Q Consensus       228 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~  307 (783)
                      +|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|++|++++|
T Consensus       181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSS
T ss_pred             EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCC
Confidence            99999998875332  7888899999999998885543  7888899999999988873 443  667777777777666


Q ss_pred             cccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccC
Q 047035          308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG  383 (783)
Q Consensus       308 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  383 (783)
                      .+...  ..+..+++|++|++++|.++.++ .+..+++|+.|++++|++.+..|..+. .+++|++|++++|++++
T Consensus       254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          254 QISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCC
T ss_pred             ccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCcccc
Confidence            55433  23444555555555555555442 244445555555555554433333322 34444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=3.5e-31  Score=303.29  Aligned_cols=308  Identities=19%  Similarity=0.213  Sum_probs=158.0

Q ss_pred             CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEe
Q 047035          345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID  424 (783)
Q Consensus       345 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  424 (783)
                      +++.+++++|.+. .+|..++..+++|++|++++|.+.++.+..+..+++|++|++++|.+++..|..+ ..+++|++|+
T Consensus        52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  129 (597)
T 3oja_B           52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLV  129 (597)
T ss_dssp             CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEE
T ss_pred             CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEE
Confidence            4444444444443 3333333344555555555555444433344445555555555555543322222 2445555555


Q ss_pred             CCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc
Q 047035          425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT  504 (783)
Q Consensus       425 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (783)
                      +++|.+++..+..|..+++|+.|++++|.+++ ++...+..+++|++|++++|.+.+.   .+..+++|+.|++++|.++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            55555553333334555555555555555542 2223334455555555555555442   1333455555555555544


Q ss_pred             cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-
Q 047035          505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-  583 (783)
Q Consensus       505 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-  583 (783)
                      +     +...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..+++|++|+|++|.+.+.+|..+ 
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            2     122345555555555554332221   1355556666665554  2445555666666666666655555555 


Q ss_pred             CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEE
Q 047035          584 NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGIL  663 (783)
Q Consensus       584 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  663 (783)
                      .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++. .+|.++..+++|+.|+|++|.+++. |  +..+++|+.|
T Consensus       276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L  350 (597)
T 3oja_B          276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL  350 (597)
T ss_dssp             TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence            55666666666666653 4445555666666666666665 4555566666666666666666533 2  4555666666


Q ss_pred             ecCCCcCccc
Q 047035          664 DLSHNKLNGS  673 (783)
Q Consensus       664 ~ls~N~l~g~  673 (783)
                      ++++|++++.
T Consensus       351 ~l~~N~~~~~  360 (597)
T 3oja_B          351 TLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCEEHH
T ss_pred             EeeCCCCCCh
Confidence            6666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=5.3e-31  Score=301.80  Aligned_cols=309  Identities=22%  Similarity=0.239  Sum_probs=244.3

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCC
Q 047035           72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLR  151 (783)
Q Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~  151 (783)
                      .+++++.+++++|.+...++    ..+..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+.+..| ..+++++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  123 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP  123 (597)
T ss_dssp             GGCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred             cCCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCC
Confidence            46789999999998877655    567888999999999999988778889999999999999999988765 4789999


Q ss_pred             CCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEE
Q 047035          152 NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD  230 (783)
Q Consensus       152 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  230 (783)
                      +|++|++++|.+...++. .++++++|++|++++|.+++.++ .++.+++|++|++++|.+++ ++   +..+++|+.|+
T Consensus       124 ~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~  198 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHAN  198 (597)
T ss_dssp             TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEE
T ss_pred             CCCEEEeeCCCCCCCCHH-HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhh
Confidence            999999999999877653 57889999999999999988777 78899999999999998874 23   56688899999


Q ss_pred             ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035          231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL  310 (783)
Q Consensus       231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~  310 (783)
                      +++|.+.+     +...++|+.|++++|.+... |..+  .++|+.|++++|.+.+.   ..+..+++|+.|++++|.+.
T Consensus       199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC
T ss_pred             cccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccC
Confidence            99998774     34456899999999988743 3322  36899999999988852   34778888888888888877


Q ss_pred             ccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCcc
Q 047035          311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKV  390 (783)
Q Consensus       311 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  390 (783)
                      ...+..+..+++|++|++++|.++.+|.....+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+.   +..
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~---~~~  342 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLS  342 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCC
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc---Chh
Confidence            77667777778888888888888877777777778888888888777 5666553 667777777777777654   345


Q ss_pred             CCCCccEEEcccCcCC
Q 047035          391 KHDLLRHLDISNNNLT  406 (783)
Q Consensus       391 ~~~~L~~L~L~~n~l~  406 (783)
                      .+++|+.|++++|.+.
T Consensus       343 ~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          343 THHTLKNLTLSHNDWD  358 (597)
T ss_dssp             TTCCCSEEECCSSCEE
T ss_pred             hcCCCCEEEeeCCCCC
Confidence            5566666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.3e-30  Score=274.36  Aligned_cols=287  Identities=19%  Similarity=0.196  Sum_probs=193.0

Q ss_pred             CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035          370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL  449 (783)
Q Consensus       370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  449 (783)
                      +++.++++++.++.++   ..-.+.+++|++++|.+.+..|..+ ..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip---~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVP---KEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCC---SCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccC---CCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4566666666655432   2223566777777776664333333 35677777777777777666777777777777777


Q ss_pred             cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccc--ccccccccCCCCcEEEccCCcc
Q 047035          450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLL  527 (783)
Q Consensus       450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l  527 (783)
                      ++|+++ .+|...+   ++|++|++++|++.+..+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            777776 5555433   677777777777776555567777777777777777742  455666655 777777777777


Q ss_pred             cccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh
Q 047035          528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL  606 (783)
Q Consensus       528 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l  606 (783)
                      ++ +|..+.  ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|+++ .+|..+
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            74 454443  577777777777777666777777777777777777776666555 6777777777777777 677777


Q ss_pred             hcCCCCcEEECcCCccccCCchhccC------CcCCCEEeCcCCccc--ccCCcchhCCCCCCEEecCCCc
Q 047035          607 FRSTELLTLDLRDNKFFGRIPDQINN------HSELRVLLLRGNYLQ--GQIPIALCQLQKLGILDLSHNK  669 (783)
Q Consensus       607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~ls~N~  669 (783)
                      ..+++|+.|++++|++++..+..+..      .+.|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            77777777777777777665555543      356777777777776  5556667777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.8e-30  Score=271.24  Aligned_cols=291  Identities=24%  Similarity=0.307  Sum_probs=201.1

Q ss_pred             CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035          419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL  498 (783)
Q Consensus       419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  498 (783)
                      +++.++++++.++ .+|..+.  ++|+.|++++|.+. .++...+..+++|++|++++|++.+..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3555555555554 3444332  45566666666655 333334456666666666666666655566666666666666


Q ss_pred             cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccc--ccCcccccCCCCCCEEeCCCcccc
Q 047035          499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE--GNIPVQINNFRQLQLLDLSENRLF  576 (783)
Q Consensus       499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~  576 (783)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..++++++|+.|++++|.++  +..|..+..+ +|++|++++|++.
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            666666 3444332  67777777777777666666777777777777777775  3566667666 7888888888877


Q ss_pred             cccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhC
Q 047035          577 GSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ  656 (783)
Q Consensus       577 ~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  656 (783)
                      + +|..+ .++|++|++++|.+++..|..+.++++|+.|++++|++.+..|.++..+++|+.|++++|+++ .+|..++.
T Consensus       186 ~-l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          186 G-IPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             S-CCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             c-cCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            5 44433 267888888888888777788888889999999999988877778888899999999999888 78888889


Q ss_pred             CCCCCEEecCCCcCcccCCcchhhccccccCCCcccCCcceeeeecCCcccccccccccccccccCCCCccccccceEEE
Q 047035          657 LQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQF  736 (783)
Q Consensus       657 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (783)
                      +++|+.|++++|++++.-+..|......                                                    
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~----------------------------------------------------  290 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFG----------------------------------------------------  290 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCC----------------------------------------------------
T ss_pred             CccCCEEECCCCCCCccChhHccccccc----------------------------------------------------
Confidence            9999999999998875444433221100                                                    


Q ss_pred             EeccceeeecCCccCcceeEeccCCcCc--ccCCccccCcCCCccccCC
Q 047035          737 VTKNRYEFYNGSNLNYMSGIDLSYNELT--GEIPSEIGELPKVRALNLS  783 (783)
Q Consensus       737 ~~~~~~~~~~~~~l~~l~~ldls~N~l~--g~ip~~~~~l~~L~~lnls  783 (783)
                                 .....++.|++++|.++  +..|..+..++.|+.++++
T Consensus       291 -----------~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          291 -----------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             -----------SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             -----------cccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence                       01234677888888887  6667778888888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.9e-33  Score=312.87  Aligned_cols=351  Identities=20%  Similarity=0.180  Sum_probs=264.1

Q ss_pred             CccccEEeCCCCCCCcc--ChhhhcCCCCCEEEccCCcccCC----CChhhhhcCCCCcEEEccCccccCcccCCc-cCC
Q 047035          320 TFQLKVLQLPNCNLKVI--PSFLLHQYDFKFLDLSSNKLVGN----FPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKH  392 (783)
Q Consensus       320 ~~~L~~L~L~~~~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~  392 (783)
                      ++++++|+++++.++..  ...+..+++|++|++++|.+.+.    ++..+ ..+++|++|++++|.+.+.....+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            35789999999998833  33477889999999999998743    33333 367999999999998876422111 223


Q ss_pred             C----CccEEEcccCcCCC----CCChhhhhhcCCceEEeCCCCcccccCCccc-----cCCCCCCeeeccCCcCccccC
Q 047035          393 D----LLRHLDISNNNLTG----MLPQNMGIVIQKLMYIDISKNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGDLS  459 (783)
Q Consensus       393 ~----~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~i~  459 (783)
                      +    +|++|++++|++++    .++..+ ..+++|++|++++|.+++..+..+     ...++|++|++++|++++...
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            3    69999999998874    234444 367899999999999875433332     235679999999998875321


Q ss_pred             ---hhhhhcCCCCcEEECcCccccccCCCccc-----CCCCccEEEccCcccccc----cccccccCCCCcEEEccCCcc
Q 047035          460 ---ATSVIRCASLEYLDVSENNFYGHIFPTYM-----NLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLL  527 (783)
Q Consensus       460 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l  527 (783)
                         ...+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence               23345678999999999988764433332     356899999999998864    566777889999999999988


Q ss_pred             cccC-----CCCcCCCCCCcEEECCCCccccc----CcccccCCCCCCEEeCCCccccccccccc------CcCCCcEEE
Q 047035          528 SGHI-----PCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLQLLDLSENRLFGSIASSL------NLSSIMHLY  592 (783)
Q Consensus       528 ~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~l~~L~~L~  592 (783)
                      .+..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|++.+..+..+      ..++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            7532     33334678899999999998864    67777788999999999998875444333      236899999


Q ss_pred             ccCCccccc----CchhhhcCCCCcEEECcCCccccCCchhccC-----CcCCCEEeCcCCcccc----cCCcchhCCCC
Q 047035          593 LQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGRIPDQINN-----HSELRVLLLRGNYLQG----QIPIALCQLQK  659 (783)
Q Consensus       593 L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~l~~l~~  659 (783)
                      +++|.+++.    ++..+..+++|++|++++|++.+..+..+..     .++|+.|++++|++++    .+|..+..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            999998865    5677778899999999999987765555542     6789999999999986    77888888999


Q ss_pred             CCEEecCCCcCcc
Q 047035          660 LGILDLSHNKLNG  672 (783)
Q Consensus       660 L~~L~ls~N~l~g  672 (783)
                      |+.||+++|++++
T Consensus       400 L~~L~l~~N~i~~  412 (461)
T 1z7x_W          400 LRELDLSNNCLGD  412 (461)
T ss_dssp             CCEEECCSSSCCH
T ss_pred             ccEEECCCCCCCH
Confidence            9999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-29  Score=268.87  Aligned_cols=288  Identities=20%  Similarity=0.198  Sum_probs=180.4

Q ss_pred             CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035          370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL  449 (783)
Q Consensus       370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  449 (783)
                      +++.++++++.++.++   ..-.+.+++|++++|++++..+..+ ..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp---~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVP---KDLPPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCC---CSCCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccC---ccCCCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4455555555444331   1123456666666666653333233 35666666666666666666666666677777777


Q ss_pred             cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccc--ccccccccCCCCcEEEccCCcc
Q 047035          450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLL  527 (783)
Q Consensus       450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l  527 (783)
                      ++|.++ .+|...+   ++|++|++++|++.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            776665 4554432   566777777776666555556666777777777776642  4555666677777777777776


Q ss_pred             cccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh
Q 047035          528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL  606 (783)
Q Consensus       528 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l  606 (783)
                      .. +|..+.  ++|++|++++|++++..|..+..+++|++|++++|++.+..+..+ .+++|++|++++|+++ .+|..+
T Consensus       184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            63 444433  667777777777776666777777777777777777776655555 6677777777777776 667777


Q ss_pred             hcCCCCcEEECcCCccccCCchhccC------CcCCCEEeCcCCcccc--cCCcchhCCCCCCEEecCCCc
Q 047035          607 FRSTELLTLDLRDNKFFGRIPDQINN------HSELRVLLLRGNYLQG--QIPIALCQLQKLGILDLSHNK  669 (783)
Q Consensus       607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~ls~N~  669 (783)
                      ..+++|++|++++|++++..+..+..      .+.++.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            77777777777777776655555532      3567777777777643  345667777777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.5e-33  Score=313.80  Aligned_cols=385  Identities=19%  Similarity=0.100  Sum_probs=278.1

Q ss_pred             CCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCC-----ccChhhhcCCCC
Q 047035          272 TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK-----VIPSFLLHQYDF  346 (783)
Q Consensus       272 ~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~ip~~l~~~~~L  346 (783)
                      ++|++|++++|.+........+..+++|++|++                        ++|.++     .++..+..+++|
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L------------------------~~~~l~~~~~~~l~~~l~~~~~L   58 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRL------------------------DDCGLTEARCKDISSALRVNPAL   58 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEE------------------------ESSCCCHHHHHHHHHHHHTCTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEc------------------------cCCCCCHHHHHHHHHHHHhCCCc
Confidence            457778888877763332333555555555555                        455554     345667777888


Q ss_pred             CEEEccCCcccCCCChhhhhcCC----CCcEEEccCccccCcc----cCCccCCCCccEEEcccCcCCCCCChhhhhh--
Q 047035          347 KFLDLSSNKLVGNFPTWLMQNNT----KLEVLRLSNNSFSGIL----QLPKVKHDLLRHLDISNNNLTGMLPQNMGIV--  416 (783)
Q Consensus       347 ~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~--  416 (783)
                      ++|++++|.+.+..+..+...++    +|++|++++|.++...    +..+..+++|++|++++|.+++..+..+...  
T Consensus        59 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence            88888888877555555554555    6888888888877432    2334677888888888888765444444322  


Q ss_pred             --cCCceEEeCCCCccccc----CCccccCCCCCCeeeccCCcCccccChhhh----hcCCCCcEEECcCcccccc----
Q 047035          417 --IQKLMYIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSGDLSATSV----IRCASLEYLDVSENNFYGH----  482 (783)
Q Consensus       417 --l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~----~~l~~L~~L~L~~n~l~~~----  482 (783)
                        .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+....    ...++|++|++++|.+++.    
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence              34699999999988764    355567788999999999988643322222    1356899999999988763    


Q ss_pred             CCCcccCCCCccEEEccCccccccc-----ccccccCCCCcEEEccCCccccc----CCCCcCCCCCCcEEECCCCcccc
Q 047035          483 IFPTYMNLTQLRWLYLKNNHFTGKI-----KAGLLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEG  553 (783)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  553 (783)
                      ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            4556677899999999999887543     22233578999999999998864    56777788999999999999876


Q ss_pred             cCcccccC-----CCCCCEEeCCCcccccc----ccccc-CcCCCcEEEccCCcccccCchhhhc-----CCCCcEEECc
Q 047035          554 NIPVQINN-----FRQLQLLDLSENRLFGS----IASSL-NLSSIMHLYLQNNALSGQIPSTLFR-----STELLTLDLR  618 (783)
Q Consensus       554 ~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls  618 (783)
                      ..+..+..     .++|++|++++|.+++.    ++..+ .+++|++|++++|.+++..+..+..     .++|++|+++
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  378 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  378 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence            54444432     36899999999999865    45555 7799999999999998766665553     6799999999


Q ss_pred             CCcccc----CCchhccCCcCCCEEeCcCCcccccCCcchh-----CCCCCCEEecCCCcCcccCCcchhh
Q 047035          619 DNKFFG----RIPDQINNHSELRVLLLRGNYLQGQIPIALC-----QLQKLGILDLSHNKLNGSIPSCFVN  680 (783)
Q Consensus       619 ~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g~iP~~~~~  680 (783)
                      +|++++    .+|..+..+++|+.|++++|++++.-...+.     ....|+.|++.++.+....+..+..
T Consensus       379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~  449 (461)
T 1z7x_W          379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  449 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence            999986    7888999999999999999999865322222     2457888999888887665554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.9e-29  Score=263.90  Aligned_cols=267  Identities=19%  Similarity=0.218  Sum_probs=154.1

Q ss_pred             CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035          370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL  449 (783)
Q Consensus       370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  449 (783)
                      .++.|++++|.++++....+..+++|++|++++|++++..|..+. .+++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            444444444444444333344455555555555555433344332 4555555555555554 3343332  45666666


Q ss_pred             cCCcCccccChhhhhcCCCCcEEECcCccccc--cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcc
Q 047035          450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYG--HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL  527 (783)
Q Consensus       450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  527 (783)
                      ++|.+. .++...+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+
T Consensus       129 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             CSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred             CCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence            666655 3444445556666666666665542  444555666666666666666653 333332  5666666666666


Q ss_pred             cccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh
Q 047035          528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL  606 (783)
Q Consensus       528 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l  606 (783)
                      .+..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++. .+|..+ .+++|++|++++|++++..+..|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            6666666666666666666666666655556666666666666666665 455545 66667777777776665444444


Q ss_pred             hc------CCCCcEEECcCCcccc--CCchhccCCcCCCEEeCcCCc
Q 047035          607 FR------STELLTLDLRDNKFFG--RIPDQINNHSELRVLLLRGNY  645 (783)
Q Consensus       607 ~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~  645 (783)
                      ..      .+.++.|++++|.+..  ..|..+..+.+++.++|++|+
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            32      3667788888887753  456677778888888888774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=6.4e-28  Score=252.48  Aligned_cols=231  Identities=20%  Similarity=0.208  Sum_probs=162.7

Q ss_pred             CCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccccc--CCCcccCCCCccEEEccCcccccccccccccCCCCcEE
Q 047035          443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH--IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL  520 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  520 (783)
                      +|++|++++|.++ .+|...+..+++|++|++++|.+...  .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4444444444444 34444444455555555555544421  1333444556666666666655 344456666777777


Q ss_pred             EccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCc
Q 047035          521 DISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNA  597 (783)
Q Consensus       521 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~  597 (783)
                      ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ .+|..+ .+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            777777765544 467777777777777777777777777777788888888887776 466666 77888888888888


Q ss_pred             ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCC-CCCEEecCCCcCcccCC
Q 047035          598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ-KLGILDLSHNKLNGSIP  675 (783)
Q Consensus       598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP  675 (783)
                      +++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            8877788888888899999999988877777888889999999999999988888888884 89999999999987543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=264.80  Aligned_cols=274  Identities=20%  Similarity=0.194  Sum_probs=166.8

Q ss_pred             EEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcC
Q 047035          397 HLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE  476 (783)
Q Consensus       397 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~  476 (783)
                      ..+.+++.++ .+|..+.   ++|++|++++|.+++..+..+..+++|+.|++++|+++ .++...+..+++|++|++++
T Consensus        35 ~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCC
Confidence            3444444444 4444332   34555555555555444445555555555555555555 23333344555555555555


Q ss_pred             ccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcEEEccCC-cccccCCCCcCCCCCCcEEECCCCccccc
Q 047035          477 NNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVVLDISNN-LLSGHIPCWIGNFSYLDVLLMSKNHLEGN  554 (783)
Q Consensus       477 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  554 (783)
                      |++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..++++++|++|++++|++++.
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            55554333335555555555555555553222 24555666666666665 34444455566666666666666666666


Q ss_pred             CcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhh---cCCCCcEEECcCCcccc----CC
Q 047035          555 IPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF---RSTELLTLDLRDNKFFG----RI  626 (783)
Q Consensus       555 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~  626 (783)
                      .|..+..+++|++|++++|++....+..+ .+++|++|++++|.+++..+..+.   ..+.++.++++++.+.+    .+
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence            66666666666666666666643222222 466677777777776654443332   35667888888888766    47


Q ss_pred             chhccCCcCCCEEeCcCCcccccCCcc-hhCCCCCCEEecCCCcCcccCCc
Q 047035          627 PDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       627 p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      |+++..+++|+.|++++|+++ .+|.. ++.+++|+.|++++|++++..|.
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            888999999999999999999 56666 58999999999999999998773

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.3e-28  Score=253.83  Aligned_cols=281  Identities=21%  Similarity=0.242  Sum_probs=224.1

Q ss_pred             cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccc--cChhhhhcCCCCcEEE
Q 047035          396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD--LSATSVIRCASLEYLD  473 (783)
Q Consensus       396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--i~~~~~~~l~~L~~L~  473 (783)
                      +.++.+++.++ .+|..+   .++|++|++++|.++...+..+..+++|++|++++|.++..  ++.. +..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEE
Confidence            45666666665 566544   35788888888888744444577888888888888887622  2333 34688899999


Q ss_pred             CcCccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccc
Q 047035          474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE  552 (783)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  552 (783)
                      +++|.+.+ ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            99888875 55667888999999999998886554 56888899999999999999888888999999999999999998


Q ss_pred             c-cCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhc
Q 047035          553 G-NIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI  630 (783)
Q Consensus       553 ~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  630 (783)
                      + .+|..+..+++|++|++++|++.+..|..+ .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            6 578889999999999999999988878777 88999999999999997777788999999999999999999999999


Q ss_pred             cCCc-CCCEEeCcCCcccccCCc--chhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035          631 NNHS-ELRVLLLRGNYLQGQIPI--ALCQLQKLGILDLSHNKLNGSIPSCFVNML  682 (783)
Q Consensus       631 ~~l~-~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~  682 (783)
                      ..++ +|+.|++++|.+++.-+.  ...-+...+.+.+..+.+.+..|+.+.+..
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            8885 999999999999865321  122233445566778888888888876654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.3e-28  Score=259.41  Aligned_cols=258  Identities=21%  Similarity=0.174  Sum_probs=131.0

Q ss_pred             CCCCCCCcC---CCCCCCCcccceeEecC--------CCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEe
Q 047035           12 ADEILTSWV---DDGISDCCDWERVTCDA--------TAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILD   80 (783)
Q Consensus        12 ~~~~~~~W~---~~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~   80 (783)
                      +.+.+++|.   .. ..++|.|.|+.|..        ...+|+.++++++.+.          .+. ..+..+++|++|+
T Consensus        43 ~~~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----------~lp-~~l~~l~~L~~L~  110 (328)
T 4fcg_A           43 RNRWHSAWRQANSN-NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----------QFP-DQAFRLSHLQHMT  110 (328)
T ss_dssp             CTTHHHHHHHHTTT-CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----------SCC-SCGGGGTTCSEEE
T ss_pred             chhhhhhhcccccc-cccccccCCcchhhhHHHHhcccccceeEEEccCCCch----------hcC-hhhhhCCCCCEEE
Confidence            345567884   22 36799999999952        2345566666555441          111 2244455666666


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCC
Q 047035           81 LSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW  160 (783)
Q Consensus        81 Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~  160 (783)
                      |++|.++ .+|    ..++.+++|++|+|++|.++ .+|..++.+++|++|++++|++.+.+|. .+..      ..+  
T Consensus       111 L~~n~l~-~lp----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~------~~~--  175 (328)
T 4fcg_A          111 IDAAGLM-ELP----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLAS------TDA--  175 (328)
T ss_dssp             EESSCCC-CCC----SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEE------EC---
T ss_pred             CCCCCcc-chh----HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhh------ccc--
Confidence            6655555 333    44555555666666665555 4455555556666666655555554443 2222      000  


Q ss_pred             CCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccC
Q 047035          161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL  240 (783)
Q Consensus       161 n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  240 (783)
                              ...++++++|++|++++|+++..+..++.+++|++|++++|.+++ ++ ..+..+++|++|++++|.+.+.+
T Consensus       176 --------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~-~~l~~l~~L~~L~Ls~n~~~~~~  245 (328)
T 4fcg_A          176 --------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LG-PAIHHLPKLEELDLRGCTALRNY  245 (328)
T ss_dssp             --------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CC-GGGGGCTTCCEEECTTCTTCCBC
T ss_pred             --------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cc-hhhccCCCCCEEECcCCcchhhh
Confidence                    001222445555555555444333344445555555555555442 33 23445555555555555555555


Q ss_pred             CccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035          241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS  307 (783)
Q Consensus       241 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~  307 (783)
                      |..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|+.+.+..+
T Consensus       246 p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGG
T ss_pred             HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHH
Confidence            55555555555555555555555555555555555555555555555553 2445555555554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.1e-30  Score=297.94  Aligned_cols=410  Identities=17%  Similarity=0.076  Sum_probs=253.5

Q ss_pred             ccccCCCCCCEEeCCCCCCC---CCCCCCCC--------cccCCCCCCCEEeCCCCCCCCCCcccccC-CC-CCCEEEcc
Q 047035           68 SLFLPFQELQILDLSGNYFD---GWNENKDY--------DSSGSSKKLKILNLNYNNFNDSVLPYLNT-LT-SLTTLNLY  134 (783)
Q Consensus        68 ~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~--------~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~-l~-~L~~L~Ls  134 (783)
                      ..+..+++|++|+++++...   +..+....        .....+++|++|+|++|.+++..+..++. ++ +|++|+|+
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence            45678999999999875321   12221000        01127899999999999988766776765 44 49999999


Q ss_pred             CCc-CCCCCCchhccCCCCCCeEeCCCCCCCCCcCc---cccCCCCCCCEEECcCCcCccc----CC-CcCCCCCCCEEE
Q 047035          135 YNR-IGGLNPSQGLANLRNLKALNLSWNGISSGATR---LGLGNLTNLEVLDLSANRISGS----LT-ELAPFRNLKVLG  205 (783)
Q Consensus       135 ~n~-l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~Ls~n~~~~~----~~-~l~~l~~L~~L~  205 (783)
                      +|. +..........++++|++|++++|.+.+....   ..+..+++|++|++++|.+++.    .+ .+..+++|++|+
T Consensus       147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence            986 22110111235889999999999987665321   2345789999999999998732    22 456789999999


Q ss_pred             ccCccCcccCCcccccCCCCCcEEEccCcccc---ccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCC
Q 047035          206 MRNNLLNGSVESKGICELKNLTELDLGENNLE---GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN  282 (783)
Q Consensus       206 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  282 (783)
                      +++|.+.+ ++ ..+..+++|++|+++.....   ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|
T Consensus       227 L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          227 VGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             CSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred             ccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence            99998874 45 67888999999999864332   23455678889999999988644 367888888999999999999


Q ss_pred             ccceecChhhhcCCCCCcEEEeccCcccccCCC-CCCCCccccEEeCCC-----------CCCC--ccChhhhcCCCCCE
Q 047035          283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE-NWIPTFQLKVLQLPN-----------CNLK--VIPSFLLHQYDFKF  348 (783)
Q Consensus       283 ~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~L~~-----------~~l~--~ip~~l~~~~~L~~  348 (783)
                      .+.+......+..+++|++|+++.+ +...... ....+++|++|++++           +.++  .++.....+++|++
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             cCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence            8765544455788999999998732 2111111 112345677777763           3444  23333445666777


Q ss_pred             EEccCCcccCCCChhhhhcCCCCcEEEcc----CccccCccc-----CCccCCCCccEEEcccCc--CCCCCChhhhhhc
Q 047035          349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLS----NNSFSGILQ-----LPKVKHDLLRHLDISNNN--LTGMLPQNMGIVI  417 (783)
Q Consensus       349 L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~----~n~l~~~~~-----~~~~~~~~L~~L~L~~n~--l~~~~p~~~~~~l  417 (783)
                      |+++.+.+++..+..+...+++|++|+++    .|.+++.+.     .....+++|++|+++.|.  +++..+..++..+
T Consensus       383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~  462 (592)
T 3ogk_B          383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS  462 (592)
T ss_dssp             EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred             EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence            77666666655555555446666666664    334443210     001335555555554332  3333333333334


Q ss_pred             CCceEEeCCCCcccc-cCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035          418 QKLMYIDISKNNFEG-NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG  481 (783)
Q Consensus       418 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  481 (783)
                      ++|++|++++|++++ .++..+..+++|++|++++|.+++.........+++|++|++++|++++
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            555555555555543 2223334455555555555554433222333345555555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.3e-29  Score=291.19  Aligned_cols=328  Identities=12%  Similarity=0.064  Sum_probs=158.0

Q ss_pred             CccccEEeCCCCCCC-----ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCcccc---CcccCCccC
Q 047035          320 TFQLKVLQLPNCNLK-----VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS---GILQLPKVK  391 (783)
Q Consensus       320 ~~~L~~L~L~~~~l~-----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~  391 (783)
                      +++|++|++++|.++     .++..+..+++|+.|++++|.+.+ +|..+ ..+++|++|+++.....   .........
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH-hhhhHHHhhcccccccccchHHHHHHhhc
Confidence            344555555555554     334455567777777777777664 45433 36677777777653221   011112244


Q ss_pred             CCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCC-ccccCCCCCCeeeccCCcCccccChhhhhcCCCCc
Q 047035          392 HDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP-YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE  470 (783)
Q Consensus       392 ~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  470 (783)
                      +++|+.++++++.. +.+|..+ ..+++|++|++++|.+++... ..+..+++|+.|+++ +.+...........+++|+
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred             cccccccCccccch-hHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence            55666666655422 2333333 245556666665555443222 223455555555555 2222222222233455555


Q ss_pred             EEECcC---ccccccCCCcccCCCCccEEEccCcccccc-cccccccCCCCcEEEccCCcccccCCCCcCC-CCCCcEEE
Q 047035          471 YLDVSE---NNFYGHIFPTYMNLTQLRWLYLKNNHFTGK-IKAGLLNSHGLVVLDISNNLLSGHIPCWIGN-FSYLDVLL  545 (783)
Q Consensus       471 ~L~L~~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~  545 (783)
                      +|++++   +......                .+.+++. ++.....+++|++|+++.|.+++..+..++. +++|+.|+
T Consensus       346 ~L~L~~g~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~  409 (592)
T 3ogk_B          346 RLRIERGADEQGMEDE----------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR  409 (592)
T ss_dssp             EEEEECCCCSSTTSST----------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred             EEEeecCccccccccc----------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence            555552   0000000                1222221 1111223444555555444444433333333 44555555


Q ss_pred             CC----CCccccc-----CcccccCCCCCCEEeCCCcc--ccccccccc--CcCCCcEEEccCCcccc-cCchhhhcCCC
Q 047035          546 MS----KNHLEGN-----IPVQINNFRQLQLLDLSENR--LFGSIASSL--NLSSIMHLYLQNNALSG-QIPSTLFRSTE  611 (783)
Q Consensus       546 L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~--~l~~L~~L~L~~n~l~~-~~p~~l~~l~~  611 (783)
                      ++    .|.+++.     ++..+..+++|++|++++|.  +++..+..+  .+++|++|++++|++++ .++..+..+++
T Consensus       410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  489 (592)
T 3ogk_B          410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN  489 (592)
T ss_dssp             EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred             EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence            53    3444432     23334456666666665433  444333333  45666666666666654 23444456666


Q ss_pred             CcEEECcCCccccC-CchhccCCcCCCEEeCcCCcccccCCcch-hCCCCCCEEecCCC
Q 047035          612 LLTLDLRDNKFFGR-IPDQINNHSELRVLLLRGNYLQGQIPIAL-CQLQKLGILDLSHN  668 (783)
Q Consensus       612 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~N  668 (783)
                      |+.|++++|++++. ++..+..+++|+.|++++|++++.-...+ ..++.+....+..+
T Consensus       490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            77777777766543 33334556677777777777664422222 24555555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.4e-27  Score=251.60  Aligned_cols=200  Identities=19%  Similarity=0.243  Sum_probs=99.3

Q ss_pred             CCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcC---------
Q 047035          466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG---------  536 (783)
Q Consensus       466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~---------  536 (783)
                      +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++         
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            333333333333333 23333333444444444444443 3333344444444444444444444443332         


Q ss_pred             CCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEE
Q 047035          537 NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTL  615 (783)
Q Consensus       537 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  615 (783)
                      ++++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+ .+++|++|++++|++.+.+|..+.++++|+.|
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            3555555555555555 455555555555555555555553 22223 45555555555555555555555555555555


Q ss_pred             ECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCc
Q 047035          616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK  669 (783)
Q Consensus       616 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  669 (783)
                      ++++|++.+.+|.++..+++|+.|+|++|++.+.+|..++++++|+.+++..+.
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            555555555555555555555555555555555555555555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=255.10  Aligned_cols=278  Identities=21%  Similarity=0.211  Sum_probs=221.2

Q ss_pred             CCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCee
Q 047035          368 NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL  447 (783)
Q Consensus       368 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  447 (783)
                      |+.....+++++.++.++   ..-.++|++|++++|++++ +|...+..+++|++|++++|.+++..|..+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP---~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIP---SGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCC---TTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccc---ccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            344444555666555542   2223567788888887774 444333468888999999998888778888899999999


Q ss_pred             eccCCcCccccChhhhhcCCCCcEEECcCccccccCC-CcccCCCCccEEEccCc-ccccccccccccCCCCcEEEccCC
Q 047035          448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF-PTYMNLTQLRWLYLKNN-HFTGKIKAGLLNSHGLVVLDISNN  525 (783)
Q Consensus       448 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~Ls~n  525 (783)
                      ++++|+++ .++...+..+++|++|++++|++.+... ..+..+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus       106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            99999988 6777777889999999999999886444 47888999999999998 466666778889999999999999


Q ss_pred             cccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc----CcCCCcEEEccCCcccc-
Q 047035          526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL----NLSSIMHLYLQNNALSG-  600 (783)
Q Consensus       526 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~l~~L~~L~L~~n~l~~-  600 (783)
                      .+.+..|..++.+++|++|++++|++....+..+..+++|++|++++|++.+..+..+    ..+.++.++++++.+++ 
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            9998889999999999999999999874444445568999999999999987655443    46778899999988876 


Q ss_pred             ---cCchhhhcCCCCcEEECcCCccccCCchh-ccCCcCCCEEeCcCCcccccCC
Q 047035          601 ---QIPSTLFRSTELLTLDLRDNKFFGRIPDQ-INNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       601 ---~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                         .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence               47888999999999999999998 56666 5899999999999999997655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.2e-27  Score=244.38  Aligned_cols=237  Identities=20%  Similarity=0.156  Sum_probs=125.7

Q ss_pred             CCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc-cccccccccccCCCCcEEE
Q 047035          443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGKIKAGLLNSHGLVVLD  521 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~  521 (783)
                      +|+.|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        33 ~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            3344444444433 2222233344444444444444444334444444445555555544 4333344455555555555


Q ss_pred             ccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccc
Q 047035          522 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSG  600 (783)
Q Consensus       522 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~  600 (783)
                      +++|.+.+..|..+.++++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            55555555555555555555555555555554444445555566666666665554444444 55666666666666665


Q ss_pred             cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhh
Q 047035          601 QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN  680 (783)
Q Consensus       601 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  680 (783)
                      ..|..+.++++|+.|++++|++.+..|..+..+++|+.|++++|++....+.. .-...++.++.+.+.+.+..|..+..
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence            55666666666666666666666655555666666666666666666443321 11122334445666677777766654


Q ss_pred             c
Q 047035          681 M  681 (783)
Q Consensus       681 ~  681 (783)
                      .
T Consensus       271 ~  271 (285)
T 1ozn_A          271 R  271 (285)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.2e-26  Score=254.44  Aligned_cols=249  Identities=19%  Similarity=0.195  Sum_probs=137.0

Q ss_pred             ccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEEC
Q 047035          395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDV  474 (783)
Q Consensus       395 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  474 (783)
                      .+.++.++..++ .+|..+   .+++++|++++|.+++..|..|.++++|+.|++++|.++ .++...+.++++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            345666666665 555543   245666666666666655666666666666666666665 333334455555666666


Q ss_pred             cCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc
Q 047035          475 SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN  554 (783)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  554 (783)
                      ++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.++                      
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------------------  188 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS----------------------  188 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC----------------------
Confidence            6555555444445555555555555555554444445555555555555432221222                      


Q ss_pred             CcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCc
Q 047035          555 IPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS  634 (783)
Q Consensus       555 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  634 (783)
                       +..|..+++|++|++++|++.+ +|....+++|++|+|++|.+++..|..|.++++|+.|++++|++.+..|..+..++
T Consensus       189 -~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          189 -EGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             -TTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -hhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence             2234445555555555555542 23322555555555555555555555666666666666666666655566666666


Q ss_pred             CCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       635 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      +|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            66666666666665555555666666666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=254.28  Aligned_cols=246  Identities=20%  Similarity=0.223  Sum_probs=147.0

Q ss_pred             ccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEEC
Q 047035          395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDV  474 (783)
Q Consensus       395 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  474 (783)
                      .+.++..+..++ .+|..+.   ++++.|++++|++.+..+..|.++++|+.|++++|.+. .++...+.++++|++|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            456777777776 6776553   56777888888777766677777777777777777776 455555667777777777


Q ss_pred             cCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCc-ccccCCCCcCCCCCCcEEECCCCcccc
Q 047035          475 SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL-LSGHIPCWIGNFSYLDVLLMSKNHLEG  553 (783)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~  553 (783)
                      ++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|. +....+..|.++++|++|++++|+++ 
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            7777766555566667777777777777665555566666666666666643 33333335556666666666666655 


Q ss_pred             cCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccC
Q 047035          554 NIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINN  632 (783)
Q Consensus       554 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  632 (783)
                      .+| .+..+++|++|+|++|++++..|..+ .+++|++|++++|++++..|..|.++++|+.|+|++|++++..+..+..
T Consensus       199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            333 24555555555555555554444444 4455555555555554444444444455555555555544444444444


Q ss_pred             CcCCCEEeCcCCccc
Q 047035          633 HSELRVLLLRGNYLQ  647 (783)
Q Consensus       633 l~~L~~L~L~~N~l~  647 (783)
                      +++|+.|+|++|.+.
T Consensus       278 l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          278 LHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEcCCCCcc
Confidence            444444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.2e-27  Score=241.31  Aligned_cols=227  Identities=21%  Similarity=0.194  Sum_probs=144.2

Q ss_pred             CeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccC
Q 047035          445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN  524 (783)
Q Consensus       445 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~  524 (783)
                      +.++.+++.++ .+|...   .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            34555555554 444422   34666666666666665555666666666666666666665566666666666666666


Q ss_pred             Cc-ccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccC
Q 047035          525 NL-LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQI  602 (783)
Q Consensus       525 n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~  602 (783)
                      |. +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+..+ .+++|++|++++|++++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            65 555556666666666666666666666656666666666666666666665555445 5666666666666666555


Q ss_pred             chhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       603 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      +..+..+++|+.|++++|++.+..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            5556666666666666666666666666666666666666666665555556666666666666666665444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.6e-28  Score=255.73  Aligned_cols=246  Identities=21%  Similarity=0.214  Sum_probs=198.8

Q ss_pred             cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCc-cccChhhh------hcCCCCcEEECcCccccccCCCcc--
Q 047035          417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS-GDLSATSV------IRCASLEYLDVSENNFYGHIFPTY--  487 (783)
Q Consensus       417 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~i~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~--  487 (783)
                      .++|+++++++|.+  .+|..+...  |+.|++++|.+. +.++....      ..+++|++|++++|++.+.+|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45566777777777  556555443  777777777773 34444331      257889999999999888888776  


Q ss_pred             cCCCCccEEEccCcccccccccccccC-----CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc--Ccccc-
Q 047035          488 MNLTQLRWLYLKNNHFTGKIKAGLLNS-----HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--IPVQI-  559 (783)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~l~~~-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~-  559 (783)
                      ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..|..++++++|++|++++|++.+.  .|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            7889999999999999876 7777766     8999999999999988889999999999999999998765  34444 


Q ss_pred             -cCCCCCCEEeCCCccccc--ccccc-c-CcCCCcEEEccCCcccccCc-hhhhcCCCCcEEECcCCccccCCchhccCC
Q 047035          560 -NNFRQLQLLDLSENRLFG--SIASS-L-NLSSIMHLYLQNNALSGQIP-STLFRSTELLTLDLRDNKFFGRIPDQINNH  633 (783)
Q Consensus       560 -~~l~~L~~L~Ls~N~l~~--~~p~~-~-~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  633 (783)
                       ..+++|++|++++|++.+  .++.. + .+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|.++.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             889999999999999983  33333 3 77999999999999998775 45667899999999999997 7888877  


Q ss_pred             cCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       634 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            8999999999999966 66 8999999999999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.6e-28  Score=256.39  Aligned_cols=267  Identities=18%  Similarity=0.186  Sum_probs=203.8

Q ss_pred             cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECc
Q 047035          396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS  475 (783)
Q Consensus       396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  475 (783)
                      +..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+   +..+++|++|+++
T Consensus        13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls   88 (317)
T 3o53_A           13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN   88 (317)
T ss_dssp             EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred             eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence            34444555443 3334444456678888888888887666778888888888888888875443   5677888888888


Q ss_pred             CccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccC
Q 047035          476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI  555 (783)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  555 (783)
                      +|++++..     ..++|++|++++|.+++..+..   +++|++|++++|.+++..+..++.+++|++|++++|++++..
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            88877532     3378888888888887655543   577888899988888877878888888999999999888777


Q ss_pred             ccccc-CCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCc
Q 047035          556 PVQIN-NFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS  634 (783)
Q Consensus       556 p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  634 (783)
                      +..+. .+++|++|++++|++++. +....+++|++|++++|++++ +|..+..+++|+.|++++|++. .+|..+..++
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            76663 678899999999988755 444468888999999998884 4555888889999999999887 4677888888


Q ss_pred             CCCEEeCcCCccc-ccCCcchhCCCCCCEEecC-CCcCcccCCcc
Q 047035          635 ELRVLLLRGNYLQ-GQIPIALCQLQKLGILDLS-HNKLNGSIPSC  677 (783)
Q Consensus       635 ~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~iP~~  677 (783)
                      +|+.|++++|++. +.+|..+..++.|+.++++ .+.+.|..|..
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            9999999999888 7778888888888888888 44566666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=248.29  Aligned_cols=245  Identities=21%  Similarity=0.177  Sum_probs=116.1

Q ss_pred             EEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCc
Q 047035          422 YIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN  501 (783)
Q Consensus       422 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (783)
                      .++..+..++ .+|..+.  ++++.|++++|++. .++...+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4444444444 3343332  34455555555544 233333444555555555555554444444445555555555555


Q ss_pred             ccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccC-cccccCCCCCCEEeCCCcccccccc
Q 047035          502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI-PVQINNFRQLQLLDLSENRLFGSIA  580 (783)
Q Consensus       502 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p  580 (783)
                      .++...+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|+..+.+ +..|.++++|++|++++|++. .+|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence            554443444444555555555555555444444455555555555543222222 223444555555555555444 233


Q ss_pred             cccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCC
Q 047035          581 SSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKL  660 (783)
Q Consensus       581 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  660 (783)
                      ....+++|++|+|++|++++..|..|.++++|+.|+|++|++.+..|..|.++++|+.|+|++|++++..+..+..+++|
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            32244555555555555554444455555555555555555544444445555555555555555554444444445555


Q ss_pred             CEEecCCCcCc
Q 047035          661 GILDLSHNKLN  671 (783)
Q Consensus       661 ~~L~ls~N~l~  671 (783)
                      +.|+|++|++.
T Consensus       282 ~~L~L~~Np~~  292 (440)
T 3zyj_A          282 ERIHLHHNPWN  292 (440)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEcCCCCcc
Confidence            55555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.1e-25  Score=248.76  Aligned_cols=249  Identities=16%  Similarity=0.150  Sum_probs=214.5

Q ss_pred             CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035          370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL  449 (783)
Q Consensus       370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  449 (783)
                      ....++.++..++.+   |..-.+++++|++++|++++..|..+ ..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        55 ~~~~v~c~~~~l~~i---P~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEV---PQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSC---CSCCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCcc---CCCCCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            456788888887765   33345789999999999996656655 47999999999999999888899999999999999


Q ss_pred             cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc-cccccccccccCCCCcEEEccCCccc
Q 047035          450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGKIKAGLLNSHGLVVLDISNNLLS  528 (783)
Q Consensus       450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~l~  528 (783)
                      ++|+++ .++...+..+++|++|++++|++....+..|..+++|++|++++|. +....+..|..+++|++|++++|.++
T Consensus       131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            999998 6777778899999999999999998777789999999999999954 44444456889999999999999998


Q ss_pred             ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhh
Q 047035          529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF  607 (783)
Q Consensus       529 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~  607 (783)
                      +. | .+..+++|+.|++++|++++..|..|.++++|+.|++++|++.+..|..+ .+++|++|+|++|++++..+..+.
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            54 4 58889999999999999998889999999999999999999998888777 888999999999999877777788


Q ss_pred             cCCCCcEEECcCCccccC
Q 047035          608 RSTELLTLDLRDNKFFGR  625 (783)
Q Consensus       608 ~l~~L~~L~Ls~N~l~~~  625 (783)
                      .+++|+.|+|++|.+...
T Consensus       288 ~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TCTTCCEEECCSSCEECS
T ss_pred             cccCCCEEEccCCCcCCC
Confidence            888999999999887543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.1e-27  Score=250.96  Aligned_cols=248  Identities=21%  Similarity=0.183  Sum_probs=203.0

Q ss_pred             cCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcc-cccCCcccc-------CCCCCCeeeccCCcCccccChh
Q 047035          390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF-EGNIPYSIG-------EMKELFLLDLSRNKFSGDLSAT  461 (783)
Q Consensus       390 ~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~i~~~  461 (783)
                      ...++|+++++++|.+  .+|..+...   |+.|++++|.+ ...+|..+.       ++++|++|++++|++++.+|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            3456688888888888  778776532   88888888888 445666555       6889999999999998888876


Q ss_pred             hh-hcCCCCcEEECcCccccccCCCcccCC-----CCccEEEccCcccccccccccccCCCCcEEEccCCccccc--CCC
Q 047035          462 SV-IRCASLEYLDVSENNFYGHIFPTYMNL-----TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH--IPC  533 (783)
Q Consensus       462 ~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~  533 (783)
                      ++ ..+++|++|++++|++++. |..+..+     ++|++|++++|.+++..+..+..+++|++|++++|++.+.  .|.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            53 7788999999999999886 6766666     8999999999999888888899999999999999997764  233


Q ss_pred             Cc--CCCCCCcEEECCCCcccc--cCc-ccccCCCCCCEEeCCCccccccccc-cc-CcCCCcEEEccCCcccccCchhh
Q 047035          534 WI--GNFSYLDVLLMSKNHLEG--NIP-VQINNFRQLQLLDLSENRLFGSIAS-SL-NLSSIMHLYLQNNALSGQIPSTL  606 (783)
Q Consensus       534 ~l--~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~-~l~~L~~L~L~~n~l~~~~p~~l  606 (783)
                      .+  +.+++|++|++++|++++  .++ ..+..+++|++|++++|++.+.+|. .+ .+++|++|++++|+++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            33  788999999999999983  222 3446789999999999999987753 33 7899999999999998 788877


Q ss_pred             hcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          607 FRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      .  ++|++||+++|++++. |. +..+++|+.|++++|++++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6  8999999999999876 76 8899999999999999985

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.7e-25  Score=248.48  Aligned_cols=268  Identities=25%  Similarity=0.268  Sum_probs=174.8

Q ss_pred             CcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeecc
Q 047035          371 LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLS  450 (783)
Q Consensus       371 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  450 (783)
                      ++.|++++|.++.++   ..-.++|++|++++|.++ .+|.    .+++|++|++++|+++ .+|.   .+++|++|+++
T Consensus        42 l~~L~ls~n~L~~lp---~~l~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLTTLP---DCLPAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCSCCC---SCCCTTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CcEEEecCCCcCccC---hhhCCCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            444444444444321   111145555555555554 3443    2455666666666655 3443   45566666666


Q ss_pred             CCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccccc
Q 047035          451 RNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH  530 (783)
Q Consensus       451 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  530 (783)
                      +|.++ .+|.    .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++ 
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            66665 3333    34566666666666654 3332   3666777777776664 332   23567777777777774 


Q ss_pred             CCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCC
Q 047035          531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRST  610 (783)
Q Consensus       531 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  610 (783)
                      +|   ..+++|+.|++++|++++ +|..   .++|+.|++++|.+. .+|..  +++|++|++++|++++ +|   ..++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~--~~~L~~L~Ls~N~L~~-lp---~~l~  241 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--PSGLKELIVSGNRLTS-LP---VLPS  241 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC--CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC--CCCCCEEEccCCccCc-CC---CCCC
Confidence            44   345677777777777774 4432   367788888888776 34432  4778888888888874 66   4557


Q ss_pred             CCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhccc
Q 047035          611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLF  683 (783)
Q Consensus       611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~  683 (783)
                      +|+.|++++|+++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|+++|.+|..+.+++.
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence            8899999999887 4665   5688999999999998 77888999999999999999999999998887763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.8e-29  Score=290.28  Aligned_cols=432  Identities=18%  Similarity=0.117  Sum_probs=259.8

Q ss_pred             ccccCCCCCCEEeCCCCCCCC---CCCCCC--------CcccCCCCCCCEEeCCCCCCCCCCccccc-CCCCCCEEEccC
Q 047035           68 SLFLPFQELQILDLSGNYFDG---WNENKD--------YDSSGSSKKLKILNLNYNNFNDSVLPYLN-TLTSLTTLNLYY  135 (783)
Q Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~---~~~~~~--------~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~  135 (783)
                      ..+..+++|++|+++++....   ..+..+        ......+++|++|+|++|.+++..+..+. .+++|++|+|++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            456789999999999875211   111000        01123678999999999988876666665 689999999998


Q ss_pred             C-cCCCCCCchhccCCCCCCeEeCCCCCCCCCcCc---cccCCCCCCCEEECcCCc--Ccc-cCC-CcCCCCCCCEEEcc
Q 047035          136 N-RIGGLNPSQGLANLRNLKALNLSWNGISSGATR---LGLGNLTNLEVLDLSANR--ISG-SLT-ELAPFRNLKVLGMR  207 (783)
Q Consensus       136 n-~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~Ls~n~--~~~-~~~-~l~~l~~L~~L~L~  207 (783)
                      | .+++......+.++++|++|++++|.+++....   .....+++|++|++++|.  +.. ... .+..+++|++|+++
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            8 444321122345789999999999987664431   123367899999999886  221 111 23457889999998


Q ss_pred             CccCcccCCcccccCCCCCcEEEccCcc-------ccccCCccccCCCCCCEE-EcccccCCccCchhhcCCCCCCEEeC
Q 047035          208 NNLLNGSVESKGICELKNLTELDLGENN-------LEGQLPWCLSDLIGLKVL-DISFNHLSGNLPSVIANLTSLEYLAL  279 (783)
Q Consensus       208 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L  279 (783)
                      +|...+.++ ..+..+++|++|+++.+.       +.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++
T Consensus       220 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L  296 (594)
T 2p1m_B          220 RAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNL  296 (594)
T ss_dssp             TTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEEC
T ss_pred             CCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEc
Confidence            884333344 567778889999865543       332 34467788888888 4443322 345555567888888888


Q ss_pred             cCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccC------
Q 047035          280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS------  353 (783)
Q Consensus       280 ~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~------  353 (783)
                      ++|.+.+......+..+++|++|++++| ....                      .++.....+++|++|++++      
T Consensus       297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~----------------------~l~~l~~~~~~L~~L~L~~~~~~g~  353 (594)
T 2p1m_B          297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA----------------------GLEVLASTCKDLRELRVFPSEPFVM  353 (594)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH----------------------HHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred             cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH----------------------HHHHHHHhCCCCCEEEEecCccccc
Confidence            8888664444444667888888887765 2111                      1111222344444444422      


Q ss_pred             ---CcccCCCChhhhhcCCCCcEEEccCccccCcccCCc-cCCCCccEEEcc--c----CcCCCCCCh-----hhhhhcC
Q 047035          354 ---NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKHDLLRHLDIS--N----NNLTGMLPQ-----NMGIVIQ  418 (783)
Q Consensus       354 ---n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~--~----n~l~~~~p~-----~~~~~l~  418 (783)
                         +.+++.....+...+++|++|.+..+.+++...... ..+++|++|+++  +    +.++ ..|.     .+...++
T Consensus       354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~  432 (594)
T 2p1m_B          354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCK  432 (594)
T ss_dssp             SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCT
T ss_pred             ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCC
Confidence               222222222222335555555555555443221111 235556666665  2    2333 1221     1234567


Q ss_pred             CceEEeCCCCcccccCCccccC-CCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCC-cccCCCCccEE
Q 047035          419 KLMYIDISKNNFEGNIPYSIGE-MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWL  496 (783)
Q Consensus       419 ~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  496 (783)
                      +|++|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|++|++++|.+++.... ....+++|++|
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL  511 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence            788888866 555444444443 777888888888876544444446678888888888887543333 33457888888


Q ss_pred             EccCccccccccccc-ccCCCCcEEEccCCcc
Q 047035          497 YLKNNHFTGKIKAGL-LNSHGLVVLDISNNLL  527 (783)
Q Consensus       497 ~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l  527 (783)
                      ++++|+++......+ ..++.|+...+..+..
T Consensus       512 ~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          512 WMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             EEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             eeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            888888754433334 4567777666665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.1e-26  Score=241.86  Aligned_cols=249  Identities=23%  Similarity=0.211  Sum_probs=214.4

Q ss_pred             CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035          419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL  498 (783)
Q Consensus       419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  498 (783)
                      +++..+++.+.+....+..+..+++|++|++++|+++ .++...+..+++|++|++++|++.+..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            4667788888877555556677889999999999998 4666667899999999999999987554  889999999999


Q ss_pred             cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035          499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS  578 (783)
Q Consensus       499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  578 (783)
                      ++|.+++..     ..++|++|++++|.+.+..+..   +++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            999998533     3489999999999999776554   67899999999999988888999999999999999999987


Q ss_pred             ccccc--CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhC
Q 047035          579 IASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ  656 (783)
Q Consensus       579 ~p~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  656 (783)
                      .+..+  .+++|++|++++|.+++. |. ...+++|++|++++|++.+. |..+..+++|+.|++++|+++ .+|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            77766  689999999999999855 43 34589999999999999864 556999999999999999999 57888999


Q ss_pred             CCCCCEEecCCCcCc-ccCCcchhhcc
Q 047035          657 LQKLGILDLSHNKLN-GSIPSCFVNML  682 (783)
Q Consensus       657 l~~L~~L~ls~N~l~-g~iP~~~~~~~  682 (783)
                      +++|+.|++++|+++ +.+|..++.+.
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccc
Confidence            999999999999999 77888777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-26  Score=255.66  Aligned_cols=235  Identities=19%  Similarity=0.185  Sum_probs=175.0

Q ss_pred             CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEE
Q 047035          418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY  497 (783)
Q Consensus       418 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  497 (783)
                      ++|++|++++|.+++..|..|..+++|+.|++++|.+++..|   +..+++|++|++++|.+++..     ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            467777777777776666777777777777777777775444   567777888888887776532     236778888


Q ss_pred             ccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc-CCCCCCEEeCCCcccc
Q 047035          498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN-NFRQLQLLDLSENRLF  576 (783)
Q Consensus       498 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~  576 (783)
                      +++|.+++..+..   +++|+.|++++|.+++..|..++.+++|+.|++++|.+++.+|..+. .+++|++|+|++|.++
T Consensus       106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            8888877655543   46788888888888877777788888888888888888877777775 6788888888888887


Q ss_pred             cccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc-ccCCcchh
Q 047035          577 GSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ-GQIPIALC  655 (783)
Q Consensus       577 ~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~  655 (783)
                      +. |....+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|.++..+++|+.|++++|.+. +.+|..+.
T Consensus       183 ~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          183 DV-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EE-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             cc-cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            65 3333677888888888888754 4447778888888888888875 6777777888888888888877 66677777


Q ss_pred             CCCCCCEEecC
Q 047035          656 QLQKLGILDLS  666 (783)
Q Consensus       656 ~l~~L~~L~ls  666 (783)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            77777777775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1e-24  Score=247.07  Aligned_cols=268  Identities=26%  Similarity=0.341  Sum_probs=147.4

Q ss_pred             cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcc
Q 047035          322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS  401 (783)
Q Consensus       322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  401 (783)
                      +++.|++++|.++.+|..+.  ++|++|++++|.+. .+|.    .+++|++|++++|.+++                  
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~------------------   95 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS------------------   95 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC------------------
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc------------------
Confidence            35566666666665555433  45555555555554 3333    23455555555555443                  


Q ss_pred             cCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035          402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG  481 (783)
Q Consensus       402 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  481 (783)
                             +|.    .+++|++|++++|.+++ +|.   .+++|+.|++++|+++ .+|.    .+++|++|++++|++++
T Consensus        96 -------lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A           96 -------LPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS  155 (622)
T ss_dssp             -------CCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred             -------CCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC
Confidence                   333    23445555555554442 222   3344555555555554 2332    12455555555555543


Q ss_pred             cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccC
Q 047035          482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN  561 (783)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  561 (783)
                       +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..   
T Consensus       156 -l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---  219 (622)
T 3g06_A          156 -LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---  219 (622)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---
T ss_pred             -cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---
Confidence             222   23455556666665553 33   234566666666666653 3322   355666666666665 33432   


Q ss_pred             CCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035          562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL  641 (783)
Q Consensus       562 l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  641 (783)
                      +++|+.|++++|++++ +|  ..+++|+.|++++|+++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|+|
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            3566667777766664 34  23466777777777766 4554   4566777777777776 56777777777777777


Q ss_pred             cCCcccccCCcchhCCC
Q 047035          642 RGNYLQGQIPIALCQLQ  658 (783)
Q Consensus       642 ~~N~l~~~~p~~l~~l~  658 (783)
                      ++|++++.+|..+..++
T Consensus       292 ~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          292 EGNPLSERTLQALREIT  308 (622)
T ss_dssp             CSCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhcc
Confidence            77777777766655443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=7.2e-28  Score=276.96  Aligned_cols=331  Identities=15%  Similarity=0.096  Sum_probs=172.5

Q ss_pred             CccccEEeCCCCC--CC--ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCcc-------ccCcccCC
Q 047035          320 TFQLKVLQLPNCN--LK--VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNS-------FSGILQLP  388 (783)
Q Consensus       320 ~~~L~~L~L~~~~--l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~  388 (783)
                      +++|++|++++|.  +.  .++.....+++|++|++++|...+.++..+ ..+++|++|++..+.       +.+... .
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLSV-A  260 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHHH-H
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHHHHH-H
Confidence            3456666666654  22  223334456777777777773322344433 366777777754432       222111 1


Q ss_pred             ccCCCCccEE-EcccCcCCCCCChhhhhhcCCceEEeCCCCcccccC-CccccCCCCCCeeeccCCcCccccChhhhhcC
Q 047035          389 KVKHDLLRHL-DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNI-PYSIGEMKELFLLDLSRNKFSGDLSATSVIRC  466 (783)
Q Consensus       389 ~~~~~~L~~L-~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l  466 (783)
                      +..+++|+.+ .+..... +.++..+ ..+++|++|++++|.+++.. +..+..+++|+.|++++| +...........+
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HhcCCCcccccCCcccch-hhHHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence            2345555555 2222111 1222222 23455555555555544321 112334555555555555 2211111222234


Q ss_pred             CCCcEEECcCccccccCCCcccCCCCccEEEccCccccccccccc-ccCCCCcEEEccCCcccccCCCCcC-CCCCCcEE
Q 047035          467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGL-LNSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVL  544 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L  544 (783)
                      ++|++|++.++.-.|               ....+.+++.....+ ..+++|+.|+++.|.+++..+..+. .+++|+.|
T Consensus       338 ~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          338 KDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             TTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence            555555553211000               001122222211112 1245555555555555543333333 35556666


Q ss_pred             ECC--C----Ccccc-----cCcccccCCCCCCEEeCCCccccccccccc--CcCCCcEEEccCCcccccCchhh-hcCC
Q 047035          545 LMS--K----NHLEG-----NIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTL-FRST  610 (783)
Q Consensus       545 ~L~--~----n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~l~~L~~L~L~~n~l~~~~p~~l-~~l~  610 (783)
                      +++  +    +.+++     .++..+..+++|++|++++ .+++..+..+  .+++|++|+|++|.+++..+..+ ..++
T Consensus       403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence            665  2    33431     1222356677888888876 5555444444  37888899998888876655555 6788


Q ss_pred             CCcEEECcCCccccCCch-hccCCcCCCEEeCcCCcccccCCcch-hCCCCCCEEecCCCcCc
Q 047035          611 ELLTLDLRDNKFFGRIPD-QINNHSELRVLLLRGNYLQGQIPIAL-CQLQKLGILDLSHNKLN  671 (783)
Q Consensus       611 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~  671 (783)
                      +|+.|+|++|++++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+...
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            999999999998654443 44568899999999998865444444 56788877777766543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2e-25  Score=247.94  Aligned_cols=229  Identities=26%  Similarity=0.220  Sum_probs=200.8

Q ss_pred             cCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCc
Q 047035          439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV  518 (783)
Q Consensus       439 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~  518 (783)
                      ..+++|+.|++++|.+++ ++...+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+     .++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred             ccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence            355689999999999985 555567899999999999999988665  8899999999999999986433     38999


Q ss_pred             EEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc--CcCCCcEEEccCC
Q 047035          519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNN  596 (783)
Q Consensus       519 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~l~~L~~L~L~~n  596 (783)
                      .|++++|.+.+..+..   +++|+.|++++|.+++..|..++.+++|++|++++|.+++.+|..+  .+++|++|+|++|
T Consensus       103 ~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            9999999999876653   5789999999999999999999999999999999999999888777  6899999999999


Q ss_pred             cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc-ccCC
Q 047035          597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN-GSIP  675 (783)
Q Consensus       597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~iP  675 (783)
                      .+++..+  ...+++|+.|+|++|++++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            9996633  3468999999999999987554 58899999999999999995 7888999999999999999998 7778


Q ss_pred             cchhhcc
Q 047035          676 SCFVNML  682 (783)
Q Consensus       676 ~~~~~~~  682 (783)
                      ..+..+.
T Consensus       256 ~~~~~l~  262 (487)
T 3oja_A          256 DFFSKNQ  262 (487)
T ss_dssp             HHHTTCH
T ss_pred             HHHHhCC
Confidence            7776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.9e-24  Score=220.96  Aligned_cols=209  Identities=20%  Similarity=0.180  Sum_probs=158.7

Q ss_pred             CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035          467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM  546 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  546 (783)
                      ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666777766666655556666777777777777776666666777777777777777777766677777777777777


Q ss_pred             CCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCc----EEECcCC
Q 047035          547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELL----TLDLRDN  620 (783)
Q Consensus       547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~N  620 (783)
                      ++|++.+..+..+..+++|++|++++|++.+ .+|..+ .+++|++|++++|++++..+..+..++.|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            7777776666667777788888888887765 356666 778888888888888877777777777776    8999999


Q ss_pred             ccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      ++.+..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            99866555544 45899999999999977666789999999999999999988763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=8.4e-25  Score=224.18  Aligned_cols=226  Identities=17%  Similarity=0.185  Sum_probs=175.7

Q ss_pred             CCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEcc
Q 047035          444 LFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS  523 (783)
Q Consensus       444 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  523 (783)
                      +..+++..+.+.....   ...+++|+.|++++|.+..  ...+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        21 l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHhcCcccccccc---cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            3444555555443322   2345667777777776654  23466677777777777777652  356777888888888


Q ss_pred             CCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccC
Q 047035          524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQI  602 (783)
Q Consensus       524 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~  602 (783)
                      +|.+++..+..++++++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|++++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            888887777777888888888888888887777778888888888888888887666666 7888899999999888777


Q ss_pred             chhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035          603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML  682 (783)
Q Consensus       603 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~  682 (783)
                      +..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+.+.       ++.|+.++++.|.++|.||.+++++.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            77788899999999999999988888889999999999999988754       45788999999999999999998775


Q ss_pred             c
Q 047035          683 F  683 (783)
Q Consensus       683 ~  683 (783)
                      .
T Consensus       247 ~  247 (272)
T 3rfs_A          247 P  247 (272)
T ss_dssp             G
T ss_pred             C
Confidence            3

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5.2e-23  Score=210.69  Aligned_cols=216  Identities=22%  Similarity=0.255  Sum_probs=112.7

Q ss_pred             CCCcccceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCC
Q 047035           25 SDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKL  104 (783)
Q Consensus        25 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L  104 (783)
                      .++|.|.|+.|.- .+.++.+++++.++.          .++. .+  .+++++|++++|.+++..+    ..+..+++|
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~----------~ip~-~~--~~~l~~L~l~~n~l~~~~~----~~~~~l~~L   63 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT----------AIPS-NI--PADTKKLDLQSNKLSSLPS----KAFHRLTKL   63 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCS----------SCCS-CC--CTTCSEEECCSSCCSCCCT----TSSSSCTTC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCC----------ccCC-CC--CCCCCEEECcCCCCCeeCH----HHhcCCCCC
Confidence            4799999999863 123344555555431          0110 01  1345555555555544433    344455555


Q ss_pred             CEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECc
Q 047035          105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS  184 (783)
Q Consensus       105 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  184 (783)
                      ++|+|++|.++...+..|..+++|++|++++|.+.+.                         .+ ..+..+++|++|+++
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~-~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-------------------------PI-GVFDQLVNLAELRLD  117 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-------------------------CT-TTTTTCSSCCEEECC
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-------------------------CH-hHcccccCCCEEECC
Confidence            5555555555443333444455555555555554443                         32 134444555555555


Q ss_pred             CCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCcc
Q 047035          185 ANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGN  263 (783)
Q Consensus       185 ~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  263 (783)
                      +|.+++.++ .+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            555544443 3445555555555555554 23324455566666666666666554444566666666666666666654


Q ss_pred             CchhhcCCCCCCEEeCcCCccc
Q 047035          264 LPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       264 ~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      .+..+..+++|++|++++|.+.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHHHhccccCCCEEEecCCCee
Confidence            4445666666666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.4e-23  Score=215.97  Aligned_cols=205  Identities=23%  Similarity=0.230  Sum_probs=113.5

Q ss_pred             CCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEcc
Q 047035          444 LFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS  523 (783)
Q Consensus       444 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  523 (783)
                      |++|++++|.++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        30 l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            444444444443 2222223344444444444444444333344455555555555555554444455555555555555


Q ss_pred             CCcccccCCCCcCCCCCCcEEECCCCccccc-CcccccCCCCCCEEeCCCccccccccccc-CcCCCc----EEEccCCc
Q 047035          524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN-IPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIM----HLYLQNNA  597 (783)
Q Consensus       524 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~----~L~L~~n~  597 (783)
                      +|.+.+..+..++.+++|++|++++|++++. +|..+..+++|++|++++|++.+..+..+ .++.|+    +|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            5555554444555566666666666666542 45566666666666666666665544444 444444    66677777


Q ss_pred             ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035          598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI  650 (783)
Q Consensus       598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  650 (783)
                      +++..+.. ....+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus       189 l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          189 MNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            66443333 33346777777777776655555677777777777777777543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.7e-24  Score=219.39  Aligned_cols=227  Identities=18%  Similarity=0.185  Sum_probs=168.6

Q ss_pred             CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035          419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL  498 (783)
Q Consensus       419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  498 (783)
                      .+..+++..+.+.+..  ....+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            3444455555444332  2445666667777766665 3332  45667777777777777652  35667777788888


Q ss_pred             cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035          499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS  578 (783)
Q Consensus       499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  578 (783)
                      ++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            88877766666677788888888888888877777778888888888888888877676778888888888888888876


Q ss_pred             ccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCC
Q 047035          579 IASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQL  657 (783)
Q Consensus       579 ~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  657 (783)
                      .+..+ .+++|++|++++|++++..|..+..+++|+.|++++|++.+.       ++.|+.|+++.|.++|.+|.+++.+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            66666 788888888888888877777788899999999999988755       4468889999999999999887766


Q ss_pred             CC
Q 047035          658 QK  659 (783)
Q Consensus       658 ~~  659 (783)
                      ..
T Consensus       246 ~~  247 (272)
T 3rfs_A          246 AP  247 (272)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=208.26  Aligned_cols=204  Identities=21%  Similarity=0.196  Sum_probs=143.4

Q ss_pred             CcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCC
Q 047035          469 LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK  548 (783)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  548 (783)
                      .+.++++++.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4455555555543 333222  3555666666666554445566666666666666666655555556666667777777


Q ss_pred             CcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCc
Q 047035          549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIP  627 (783)
Q Consensus       549 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  627 (783)
                      |++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|.+++..+..|..+++|+.|++++|++.+..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            76665555566667777777777777766666555 67777777777777775555667888889999999999887777


Q ss_pred             hhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          628 DQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       628 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            778889999999999999987666678889999999999999987654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.7e-22  Score=208.64  Aligned_cols=202  Identities=25%  Similarity=0.272  Sum_probs=136.3

Q ss_pred             cCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEE
Q 047035          465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL  544 (783)
Q Consensus       465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  544 (783)
                      .++++++++++++.++. +|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.+++..+.  +.+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            44455555555555543 232221  4555566666665555555566666666666666666543332  556666666


Q ss_pred             ECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccc
Q 047035          545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFF  623 (783)
Q Consensus       545 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  623 (783)
                      ++++|+++ .+|..+..+++|++|++++|++++..|..+ .+++|++|++++|++++..+..|..+++|+.|+|++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            67666666 556666667777777777777766555556 6777777777777777666666777888888888888887


Q ss_pred             cCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCccc
Q 047035          624 GRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS  673 (783)
Q Consensus       624 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  673 (783)
                      +..+..+..+++|+.|+|++|+++ .+|..+..+.+|+.+++++|++...
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            655566778888888888888888 6788888888888999999988754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.9e-24  Score=229.04  Aligned_cols=257  Identities=18%  Similarity=0.163  Sum_probs=154.9

Q ss_pred             eCCCCcccccCCccccCCCCCCeeeccCCcCccccCh----hhhhcCC-CCcEEECcCccccccCCCcccCC-----CCc
Q 047035          424 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA----TSVIRCA-SLEYLDVSENNFYGHIFPTYMNL-----TQL  493 (783)
Q Consensus       424 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L  493 (783)
                      +++.|.+++.+|..+...++|++|++++|.++ ..+.    ..+..++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            44444444444444444444555555555544 2222    2334444 55555555555554444333332     566


Q ss_pred             cEEEccCccccccccccc----ccC-CCCcEEEccCCcccccCCCCcC----C-CCCCcEEECCCCcccccC----cccc
Q 047035          494 RWLYLKNNHFTGKIKAGL----LNS-HGLVVLDISNNLLSGHIPCWIG----N-FSYLDVLLMSKNHLEGNI----PVQI  559 (783)
Q Consensus       494 ~~L~L~~n~l~~~~~~~l----~~~-~~L~~L~Ls~n~l~~~~p~~l~----~-l~~L~~L~L~~n~l~~~~----p~~~  559 (783)
                      ++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+.    . .++|++|++++|++++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666666655444432    223 5666677766666654443332    2 246777777777776433    3333


Q ss_pred             cCCC-CCCEEeCCCccccccccccc-----Cc-CCCcEEEccCCccccc----Cchhhhc-CCCCcEEECcCCccccCCc
Q 047035          560 NNFR-QLQLLDLSENRLFGSIASSL-----NL-SSIMHLYLQNNALSGQ----IPSTLFR-STELLTLDLRDNKFFGRIP  627 (783)
Q Consensus       560 ~~l~-~L~~L~Ls~N~l~~~~p~~~-----~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p  627 (783)
                      ..++ +|++|++++|++++..+..+     .+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|++.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 77777887777766555333     23 5788888888887753    4555655 4588899999988877654


Q ss_pred             ----hhccCCcCCCEEeCcCCccccc-------CCcchhCCCCCCEEecCCCcCcccCCcchhhc
Q 047035          628 ----DQINNHSELRVLLLRGNYLQGQ-------IPIALCQLQKLGILDLSHNKLNGSIPSCFVNM  681 (783)
Q Consensus       628 ----~~l~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  681 (783)
                          ..+..+++|+.|++++|.+.+.       ++..+..+++|+.||+++|++.+..|..+.+.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~  307 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL  307 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence                3346778899999999985433       33456788889999999999988766665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.1e-24  Score=233.63  Aligned_cols=188  Identities=21%  Similarity=0.270  Sum_probs=140.0

Q ss_pred             cCCCCccEEEccCccccc----ccccccccCCCCcEEEccCCcccccCCCCcC----CC---------CCCcEEECCCCc
Q 047035          488 MNLTQLRWLYLKNNHFTG----KIKAGLLNSHGLVVLDISNNLLSGHIPCWIG----NF---------SYLDVLLMSKNH  550 (783)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~  550 (783)
                      ..+++|++|++++|.+++    .++..+..+++|++|++++|.+....+..+.    .+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            455566666666666654    3455566666677777777666533333222    23         778888888888


Q ss_pred             cc-ccCc---ccccCCCCCCEEeCCCcccc--c---cccccc-CcCCCcEEEccCCccc----ccCchhhhcCCCCcEEE
Q 047035          551 LE-GNIP---VQINNFRQLQLLDLSENRLF--G---SIASSL-NLSSIMHLYLQNNALS----GQIPSTLFRSTELLTLD  616 (783)
Q Consensus       551 l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~-~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~  616 (783)
                      ++ +.+|   ..+..+++|++|++++|++.  |   ..|..+ .+++|++|+|++|.++    +.+|..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            76 3444   45667788888888888886  2   344345 7888999999999886    67888899999999999


Q ss_pred             CcCCccccC----Cchhcc--CCcCCCEEeCcCCcccc----cCCcch-hCCCCCCEEecCCCcCcccCC
Q 047035          617 LRDNKFFGR----IPDQIN--NHSELRVLLLRGNYLQG----QIPIAL-CQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       617 Ls~N~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      |++|++.+.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999876    667774  48999999999999998    588887 668999999999999998776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.1e-22  Score=203.47  Aligned_cols=201  Identities=25%  Similarity=0.227  Sum_probs=120.3

Q ss_pred             cCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCc
Q 047035          439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV  518 (783)
Q Consensus       439 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~  518 (783)
                      ..+++++.++++++.++ .+|....   ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+.  ..+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            34455555555555554 4443321   4555555555555555455555556666666666665543222  4556666


Q ss_pred             EEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCc
Q 047035          519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNA  597 (783)
Q Consensus       519 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~  597 (783)
                      +|++++|.+. .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++.+..+..+ .+++|+.|+|++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            6666666665 455556666666666666666665555566666666666666666665555555 56666666666666


Q ss_pred             ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035          598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      +++..+..|..+++|+.|+|++|++. .+|..+...++|+.|+|++|.+.
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            66444444566677777777777765 56666666667777777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=7.3e-23  Score=214.16  Aligned_cols=224  Identities=21%  Similarity=0.193  Sum_probs=177.2

Q ss_pred             CCCeeeccCCcCccccChh--hhhcCCCCcEEECcCccccccCCCcc--cCCCCccEEEccCcccccccc----cccccC
Q 047035          443 ELFLLDLSRNKFSGDLSAT--SVIRCASLEYLDVSENNFYGHIFPTY--MNLTQLRWLYLKNNHFTGKIK----AGLLNS  514 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~~  514 (783)
                      .++.+.+.++.++...-..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3556666666554211000  11234679999999999988888877  888999999999999887544    334568


Q ss_pred             CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc--C--cccccCCCCCCEEeCCCccccccccc----cc-Cc
Q 047035          515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--I--PVQINNFRQLQLLDLSENRLFGSIAS----SL-NL  585 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~-~l  585 (783)
                      ++|++|++++|.+.+..|..++.+++|++|++++|++.+.  +  +..+..+++|++|++++|+++. ++.    .+ .+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            8999999999999988888999999999999999998653  2  2334688999999999999963 222    23 77


Q ss_pred             CCCcEEEccCCcccccCchhhhcC---CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCE
Q 047035          586 SSIMHLYLQNNALSGQIPSTLFRS---TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGI  662 (783)
Q Consensus       586 ~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  662 (783)
                      ++|++|+|++|++++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            999999999999998888888777   69999999999998 6788775  8999999999999964 43 688899999


Q ss_pred             EecCCCcCcc
Q 047035          663 LDLSHNKLNG  672 (783)
Q Consensus       663 L~ls~N~l~g  672 (783)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=7.4e-24  Score=224.84  Aligned_cols=253  Identities=19%  Similarity=0.224  Sum_probs=155.1

Q ss_pred             CccEEEcccCcCCCCCChhhhhhc--CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccc-cChhhhhcCCCCc
Q 047035          394 LLRHLDISNNNLTGMLPQNMGIVI--QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD-LSATSVIRCASLE  470 (783)
Q Consensus       394 ~L~~L~L~~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-i~~~~~~~l~~L~  470 (783)
                      .++.++++++.+.   +..+ ..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++ ..+..+++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCS
T ss_pred             hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCC
Confidence            3677787777665   2222 233  6777777777777655444 34566666666666665533 22 2334555555


Q ss_pred             EEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCC-cccc-cCCCCcCCCCCCcEEECCC
Q 047035          471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN-LLSG-HIPCWIGNFSYLDVLLMSK  548 (783)
Q Consensus       471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n-~l~~-~~p~~l~~l~~L~~L~L~~  548 (783)
                      +|++++|.+++..                        +..+..+++|++|++++| .+++ .++..+.++++|++|++++
T Consensus       122 ~L~L~~~~l~~~~------------------------~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~  177 (336)
T 2ast_B          122 NLSLEGLRLSDPI------------------------VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  177 (336)
T ss_dssp             EEECTTCBCCHHH------------------------HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             EEeCcCcccCHHH------------------------HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence            5555555554444                        444444445555555554 3332 1333344555555666666


Q ss_pred             C-ccccc-CcccccCCC-CCCEEeCCCc--ccc-ccccccc-CcCCCcEEEccCCc-ccccCchhhhcCCCCcEEECcCC
Q 047035          549 N-HLEGN-IPVQINNFR-QLQLLDLSEN--RLF-GSIASSL-NLSSIMHLYLQNNA-LSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       549 n-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~-~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      | .+++. ++..+..++ +|++|++++|  .++ +.+|..+ .+++|++|++++|. +++..+..+.++++|+.|++++|
T Consensus       178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            5 55543 455556666 6777777776  343 3445554 67777777777777 66667778888888999999888


Q ss_pred             c-cccCCchhccCCcCCCEEeCcCCcccccCCcchhCC-CCCCEEecCCCcCcccCCcchhh
Q 047035          621 K-FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQL-QKLGILDLSHNKLNGSIPSCFVN  680 (783)
Q Consensus       621 ~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~~~~  680 (783)
                      . +.......+.++++|+.|++++| +..   ..+..+ ..+..|++++|+++|..|+.+++
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            5 22222225778899999999988 332   234444 23677779999999999988765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6.5e-23  Score=217.53  Aligned_cols=221  Identities=17%  Similarity=0.149  Sum_probs=181.0

Q ss_pred             CCCeeeccCCcCccccChhhhhcC--CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccc-cccccccCCCCcE
Q 047035          443 ELFLLDLSRNKFSGDLSATSVIRC--ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGK-IKAGLLNSHGLVV  519 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~  519 (783)
                      .++.++++++.+.    ...+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3677888877765    2334455  7899999999998876655 55789999999999998865 7778888999999


Q ss_pred             EEccCCcccccCCCCcCCCCCCcEEECCCC-ccccc-CcccccCCCCCCEEeCCCc-ccccc-ccccc-CcC-CCcEEEc
Q 047035          520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGN-IPVQINNFRQLQLLDLSEN-RLFGS-IASSL-NLS-SIMHLYL  593 (783)
Q Consensus       520 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~-~l~-~L~~L~L  593 (783)
                      |++++|.+++..|..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+ .++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999998888888999999999999999 67753 6777888999999999999 88764 56555 788 9999999


Q ss_pred             cCC--ccc-ccCchhhhcCCCCcEEECcCCc-cccCCchhccCCcCCCEEeCcCCc-ccccCCcchhCCCCCCEEecCCC
Q 047035          594 QNN--ALS-GQIPSTLFRSTELLTLDLRDNK-FFGRIPDQINNHSELRVLLLRGNY-LQGQIPIALCQLQKLGILDLSHN  668 (783)
Q Consensus       594 ~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ls~N  668 (783)
                      ++|  .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......++++++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999  455 5677888889999999999999 777788889999999999999995 33222235788999999999988

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=9.7e-24  Score=225.93  Aligned_cols=276  Identities=17%  Similarity=0.149  Sum_probs=181.2

Q ss_pred             EEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCC----ccccCCC-CCCeeeccCCcCccccChhhhhcC-----C
Q 047035          398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP----YSIGEMK-ELFLLDLSRNKFSGDLSATSVIRC-----A  467 (783)
Q Consensus       398 L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l-----~  467 (783)
                      ++++.|.+++.+|.... ..++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+. .+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCC
Confidence            45666666665555442 34457777777777775554    5566676 777777777777643332 22332     7


Q ss_pred             CCcEEECcCccccccCCCc----ccCC-CCccEEEccCcccccccccccc----c-CCCCcEEEccCCcccccCC----C
Q 047035          468 SLEYLDVSENNFYGHIFPT----YMNL-TQLRWLYLKNNHFTGKIKAGLL----N-SHGLVVLDISNNLLSGHIP----C  533 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~l~----~-~~~L~~L~Ls~n~l~~~~p----~  533 (783)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.    . +++|++|++++|.+.+..+    .
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            7888888888777655443    3333 7788888888888765554433    2 3588888888888875333    3


Q ss_pred             CcCCCC-CCcEEECCCCcccccCccccc----CC-CCCCEEeCCCcccccc----ccccc-C-cCCCcEEEccCCccccc
Q 047035          534 WIGNFS-YLDVLLMSKNHLEGNIPVQIN----NF-RQLQLLDLSENRLFGS----IASSL-N-LSSIMHLYLQNNALSGQ  601 (783)
Q Consensus       534 ~l~~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~-~-l~~L~~L~L~~n~l~~~  601 (783)
                      .+..++ +|++|++++|++++..+..+.    .+ ++|++|+|++|++.+.    ++..+ . .++|++|+|++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            334444 888888888888877665443    44 5889999999988762    44444 3 46899999999988865


Q ss_pred             Cch----hhhcCCCCcEEECcCCccccCCc-------hhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035          602 IPS----TLFRSTELLTLDLRDNKFFGRIP-------DQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       602 ~p~----~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  670 (783)
                      .+.    .+..+++|++|++++|.+.+..+       ..+..+++|+.|++++|++.+..|..+.+.  +     ....+
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~--l-----~~~~~  313 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL--I-----RELSG  313 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH--H-----HHHHT
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH--H-----HHCCC
Confidence            553    34566889999999998554433       356778889999999999987766554432  1     22234


Q ss_pred             cccCCcchhhcc
Q 047035          671 NGSIPSCFVNML  682 (783)
Q Consensus       671 ~g~iP~~~~~~~  682 (783)
                      .+.+|+.+..+.
T Consensus       314 ~~~~psll~~~~  325 (362)
T 3goz_A          314 KADVPSLLNQCL  325 (362)
T ss_dssp             CCCTTTC-----
T ss_pred             CcchHHHHhhhh
Confidence            566777665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.2e-23  Score=227.52  Aligned_cols=242  Identities=20%  Similarity=0.242  Sum_probs=178.5

Q ss_pred             CChhhhhhcCCceEEeCCCCcccccC----CccccCCCCCCeeeccCCc---CccccChhh------hhcCCCCcEEECc
Q 047035          409 LPQNMGIVIQKLMYIDISKNNFEGNI----PYSIGEMKELFLLDLSRNK---FSGDLSATS------VIRCASLEYLDVS  475 (783)
Q Consensus       409 ~p~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~---l~~~i~~~~------~~~l~~L~~L~L~  475 (783)
                      ++..+. .+++|++|++++|.+.+..    +..+..+++|+.|++++|.   +.+.+|...      +..+++|++|+++
T Consensus        24 l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            444442 4667777777777776542    3346677788888887753   344444433      3567888888888


Q ss_pred             Cccccc----cCCCcccCCCCccEEEccCcccccccccccc----cC---------CCCcEEEccCCccc-ccCC---CC
Q 047035          476 ENNFYG----HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL----NS---------HGLVVLDISNNLLS-GHIP---CW  534 (783)
Q Consensus       476 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~~---------~~L~~L~Ls~n~l~-~~~p---~~  534 (783)
                      +|.+.+    .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|.+. +.+|   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            888876    3555677788888888888888654433333    33         78889999988887 3444   35


Q ss_pred             cCCCCCCcEEECCCCcccc-----cCcccccCCCCCCEEeCCCcccc----ccccccc-CcCCCcEEEccCCccccc---
Q 047035          535 IGNFSYLDVLLMSKNHLEG-----NIPVQINNFRQLQLLDLSENRLF----GSIASSL-NLSSIMHLYLQNNALSGQ---  601 (783)
Q Consensus       535 l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~-~l~~L~~L~L~~n~l~~~---  601 (783)
                      +..+++|+.|++++|+++.     ..|..+..+++|++|+|++|.++    +.+|..+ .+++|++|+|++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            6678889999999998872     34447788889999999999886    5677766 788999999999998765   


Q ss_pred             -Cchhhhc--CCCCcEEECcCCcccc----CCchhc-cCCcCCCEEeCcCCcccccCC
Q 047035          602 -IPSTLFR--STELLTLDLRDNKFFG----RIPDQI-NNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       602 -~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~~~p  651 (783)
                       +|..+..  +++|+.|+|++|++++    .+|..+ .++++|+.|++++|++++..|
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             5666644  8999999999999987    488877 668999999999999987764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.6e-21  Score=194.59  Aligned_cols=182  Identities=21%  Similarity=0.204  Sum_probs=142.3

Q ss_pred             CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCC
Q 047035          492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS  571 (783)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  571 (783)
                      ..++++++++.++ .+|..+.  +.++.|++++|.+.+..+..++++++|++|++++|++++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3456666666665 3444442  567777777777777777777777777788888777777777777777888888888


Q ss_pred             Cccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035          572 ENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI  650 (783)
Q Consensus       572 ~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  650 (783)
                      +|++.+..+..+ .+++|++|+|++|++++..+..|..+++|+.|+|++|++.+..|..++.+++|+.|+|++|++++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            888876666666 7788888888888888666666788899999999999998777778889999999999999999777


Q ss_pred             CcchhCCCCCCEEecCCCcCcccCCc
Q 047035          651 PIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      |..+..+++|+.|++++|++++..+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCCccc
Confidence            77889999999999999999887443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.2e-21  Score=194.69  Aligned_cols=195  Identities=18%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCcc-cccccccccccCCCCcEEEccC-CcccccCCCCcCCCCCCcEEE
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGKIKAGLLNSHGLVVLDISN-NLLSGHIPCWIGNFSYLDVLL  545 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~  545 (783)
                      +|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444444333344444445555555443 4433333444455555555554 445444444445555555555


Q ss_pred             CCCCcccccCcccccCCCCCC---EEeCCCc-cccccccccc-CcCCCc-EEEccCCcccccCchhhhcCCCCcEEECcC
Q 047035          546 MSKNHLEGNIPVQINNFRQLQ---LLDLSEN-RLFGSIASSL-NLSSIM-HLYLQNNALSGQIPSTLFRSTELLTLDLRD  619 (783)
Q Consensus       546 L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~-~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  619 (783)
                      +++|++++ +|. +..+++|+   +|++++| ++.+..+..+ .+++|+ +|++++|+++ .+|......++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            55555543 333 44444444   5555555 4444333334 455555 5555555555 3333322235566666666


Q ss_pred             Cc-cccCCchhccCC-cCCCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035          620 NK-FFGRIPDQINNH-SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN  668 (783)
Q Consensus       620 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  668 (783)
                      |+ +.+..+..+..+ ++|+.|++++|+++ .+|..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            63 554444555556 66666666666665 33332  4556666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.8e-21  Score=192.97  Aligned_cols=197  Identities=16%  Similarity=0.165  Sum_probs=126.0

Q ss_pred             CCCeeeccCCcCccccChhhhhcCCCCcEEECcCcc-ccccCCCcccCCCCccEEEccC-cccccccccccccCCCCcEE
Q 047035          443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN-FYGHIFPTYMNLTQLRWLYLKN-NHFTGKIKAGLLNSHGLVVL  520 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L  520 (783)
                      +|+.|++++|+++ .++...+..+++|++|++++|+ +.+..+..|..+++|++|++++ |.+++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4555555555554 3444344555555555555554 4444444555666666666665 66665555566666666666


Q ss_pred             EccCCcccccCCCCcCCCCCCc---EEECCCC-cccccCcccccCCCCCC-EEeCCCcccccccccccCcCCCcEEEccC
Q 047035          521 DISNNLLSGHIPCWIGNFSYLD---VLLMSKN-HLEGNIPVQINNFRQLQ-LLDLSENRLFGSIASSLNLSSIMHLYLQN  595 (783)
Q Consensus       521 ~Ls~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~  595 (783)
                      ++++|.+++ +|. ++.+++|+   +|++++| ++++..+..|..+++|+ +|++++|++....+..+..++|++|++++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            666666664 444 66666666   7777777 67655556677777777 77777777763333334447788888888


Q ss_pred             Cc-ccccCchhhhcC-CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035          596 NA-LSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY  645 (783)
Q Consensus       596 n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  645 (783)
                      |+ +++..+..|.++ ++|+.|++++|++++ +|..  .+++|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            84 776666777778 888888888888864 4443  56788888887763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=204.13  Aligned_cols=229  Identities=20%  Similarity=0.171  Sum_probs=132.7

Q ss_pred             CccEEEcccCcCCCCCChhh--hhhcCCceEEeCCCCcccccCCccc--cCCCCCCeeeccCCcCccccCh---hhhhcC
Q 047035          394 LLRHLDISNNNLTGMLPQNM--GIVIQKLMYIDISKNNFEGNIPYSI--GEMKELFLLDLSRNKFSGDLSA---TSVIRC  466 (783)
Q Consensus       394 ~L~~L~L~~n~l~~~~p~~~--~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~i~~---~~~~~l  466 (783)
                      .++.+.+.++.+....-..+  ...+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.   ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35566666655432100000  1134678888888888888888777  7888888888888888754441   222345


Q ss_pred             CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035          467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM  546 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  546 (783)
                      ++|++|++++|++.+..+..+..+++|++|++++|++.+...                    -..+..++.+++|++|++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--------------------LMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--------------------HHTTSCTTSSCCCCSCBC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--------------------hhHHHhhhcCCCCCEEEC
Confidence            666666666666655555555555555555555555443100                    001122234455555555


Q ss_pred             CCCcccccCcc----cccCCCCCCEEeCCCccccccccccc-Cc---CCCcEEEccCCcccccCchhhhcCCCCcEEECc
Q 047035          547 SKNHLEGNIPV----QINNFRQLQLLDLSENRLFGSIASSL-NL---SSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR  618 (783)
Q Consensus       547 ~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  618 (783)
                      ++|+++ .++.    .+..+++|++|++++|++.+..|..+ .+   ++|++|++++|+++ .+|..+.  ++|++|+|+
T Consensus       205 s~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          205 RNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             CSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred             CCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence            555554 1121    13455566666666666655544443 32   56666666666666 5565553  677777777


Q ss_pred             CCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          619 DNKFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       619 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      +|++++. |. +..+++|+.|++++|+++.
T Consensus       281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            7777653 33 4566777777777777763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.2e-20  Score=196.70  Aligned_cols=195  Identities=26%  Similarity=0.332  Sum_probs=144.6

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhcc
Q 047035           69 LFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLA  148 (783)
Q Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~  148 (783)
                      .+..+++|++|++++|.+...      +.+..+++|++|+|++|.+.+..+  +..+++|++|++++|.+.+. +  .+.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~  104 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S--AIA  104 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G--GGT
T ss_pred             cHHHcCCcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h--hhc
Confidence            445678888888888877653      346778888888888888875443  88888888888888888775 3  578


Q ss_pred             CCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcE
Q 047035          149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTE  228 (783)
Q Consensus       149 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  228 (783)
                      ++++|++|++++|.+....   .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++  .+..+++|++
T Consensus       105 ~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~  177 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTT  177 (308)
T ss_dssp             TCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCE
T ss_pred             CCCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Ch--hhcCCCCCCE
Confidence            8888888888888887753   37778888888888888776544 7777788888888887763 33  2777777888


Q ss_pred             EEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035          229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       229 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      |++++|.+.+..+  +..+++|++|++++|++++..  .+..+++|++|++++|.++
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            8888877775332  677777777777777777443  2677777777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.6e-20  Score=195.75  Aligned_cols=191  Identities=22%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035          467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM  546 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  546 (783)
                      ++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            444444444444433 11 34445555555555555543222  45555555555555555532  23555556666666


Q ss_pred             CCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCC
Q 047035          547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRI  626 (783)
Q Consensus       547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  626 (783)
                      ++|++++. +. +..+++|++|++++|++.+..+ ...+++|++|++++|.+++ ++. +..+++|+.|++++|++.+..
T Consensus       115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh
Confidence            66665532 22 5566666666666666654332 2256666666666666663 333 666677777777777775433


Q ss_pred             chhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          627 PDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       627 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      |  +..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            2  6667777777777777765442  6777777777777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=3.2e-20  Score=187.65  Aligned_cols=179  Identities=18%  Similarity=0.171  Sum_probs=123.7

Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS  547 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  547 (783)
                      +.++++++++.+.. +|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            34555665555543 333332  456666666666666556666666677777777777766666666777777777777


Q ss_pred             CCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCC
Q 047035          548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRI  626 (783)
Q Consensus       548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  626 (783)
                      +|++++..+..|..+++|++|++++|++.+..+..+ .+++|++|+|++|++++..+..|..+++|++|+|++|++.+..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            777776666666777777777777777775555555 6777777777777777655667777888888888888887777


Q ss_pred             chhccCCcCCCEEeCcCCccccc
Q 047035          627 PDQINNHSELRVLLLRGNYLQGQ  649 (783)
Q Consensus       627 p~~l~~l~~L~~L~L~~N~l~~~  649 (783)
                      |..+..+++|+.|++++|++.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            77788888888888888888765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=1.3e-20  Score=210.68  Aligned_cols=189  Identities=22%  Similarity=0.241  Sum_probs=133.3

Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS  547 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  547 (783)
                      +++.|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +.+  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            66666666666665 44433  256777777777766 445   235677777777777775 555 544  77777777


Q ss_pred             CCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCc
Q 047035          548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIP  627 (783)
Q Consensus       548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  627 (783)
                      +|++++ +|.   .+++|+.|++++|++++ +|.  .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+++ .+|
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            777775 555   56777777777777775 554  46778888888888775 666 54  78888888888886 566


Q ss_pred             hhccCCcCC-------CEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhccc
Q 047035          628 DQINNHSEL-------RVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLF  683 (783)
Q Consensus       628 ~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~  683 (783)
                      . +..  +|       +.|+|++|+++ .+|..+..+++|+.|+|++|+++|.+|..++++..
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            6 543  66       88888888888 57888888888888888888888888888887754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.2e-20  Score=181.92  Aligned_cols=179  Identities=19%  Similarity=0.176  Sum_probs=133.4

Q ss_pred             cEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035          494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN  573 (783)
Q Consensus       494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  573 (783)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..++.+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555555554 234333  356777777777777666666777777777777777777665566677778888888888


Q ss_pred             cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCc
Q 047035          574 RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI  652 (783)
Q Consensus       574 ~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  652 (783)
                      ++.+..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            8776555555 77888888888888876666667888888888888888887666678888889999999987764    


Q ss_pred             chhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035          653 ALCQLQKLGILDLSHNKLNGSIPSCFVNML  682 (783)
Q Consensus       653 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~  682 (783)
                         .++.|+.|+++.|+++|.||.+++++.
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccCcccc
Confidence               345788889999999999998887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=5.9e-20  Score=179.98  Aligned_cols=174  Identities=21%  Similarity=0.151  Sum_probs=107.4

Q ss_pred             CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCC
Q 047035          492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS  571 (783)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  571 (783)
                      +|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            45555555555554444445555556666666665554444455566666666666666665444455666666666666


Q ss_pred             Cccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035          572 ENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI  650 (783)
Q Consensus       572 ~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  650 (783)
                      +|++.+..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.       +++|+.|+++.|+++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCcee
Confidence            666665545444 566666777777766655555567777777777777766543       356777788888888888


Q ss_pred             CcchhCCCCCCEEecCCCcCcccCCc
Q 047035          651 PIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      |.+++.++.    ++..|...|..+.
T Consensus       182 p~~~~~l~~----~~~~C~~~~~~~~  203 (208)
T 2o6s_A          182 RNSAGSVAP----DSAKCSGSGKPVR  203 (208)
T ss_dssp             BCTTSSBCT----TCSBBTTTCCBGG
T ss_pred             eccCccccC----CccccccCCCcce
Confidence            877776655    4555555554444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7e-20  Score=194.85  Aligned_cols=242  Identities=16%  Similarity=0.122  Sum_probs=128.4

Q ss_pred             cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECc
Q 047035          396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS  475 (783)
Q Consensus       396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  475 (783)
                      ++++.++++++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.++...|.++++++++   
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~---   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI---   84 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE---
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh---
Confidence            34555555555 455443   24555666666665543334555555666666666555544555444444444332   


Q ss_pred             CccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCC-Cccccc
Q 047035          476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK-NHLEGN  554 (783)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~  554 (783)
                                          +.+..|+++...|..|..+++|++|++++|.+.+..+..+.....+..|++.+ +++...
T Consensus        85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence                                23333444444444444444555555555554444444444444455555533 334433


Q ss_pred             CcccccCCC-CCCEEeCCCcccccccccccCcCCCcEEEccC-CcccccCc-hhhhcCCCCcEEECcCCccccCCchhcc
Q 047035          555 IPVQINNFR-QLQLLDLSENRLFGSIASSLNLSSIMHLYLQN-NALSGQIP-STLFRSTELLTLDLRDNKFFGRIPDQIN  631 (783)
Q Consensus       555 ~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~-n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  631 (783)
                      .+..|..+. .++.|++++|++....+..+...+|+++++.+ |.++ .+| ..|.++++|++||+++|+++...+..  
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG--  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence            333444443 46666777776664444444556677777764 3444 444 45677777777777777776433323  


Q ss_pred             CCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCc
Q 047035          632 NHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK  669 (783)
Q Consensus       632 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  669 (783)
                       +.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus       222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence             3445555554444344666 36777788888876543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.4e-19  Score=192.42  Aligned_cols=228  Identities=19%  Similarity=0.176  Sum_probs=176.8

Q ss_pred             CeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcE-EEc
Q 047035          445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVV-LDI  522 (783)
Q Consensus       445 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~-L~L  522 (783)
                      +.++.++++++ .+|..+   .+++++|++++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45667777776 677644   2578888888888887656678889999999999999866555 46788888775 667


Q ss_pred             cCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc-cccccccccc-Cc-CCCcEEEccCCccc
Q 047035          523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN-RLFGSIASSL-NL-SSIMHLYLQNNALS  599 (783)
Q Consensus       523 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-~l-~~L~~L~L~~n~l~  599 (783)
                      +.|++....|..|.++++|++|++++|++.+..+..+....++..+++.++ ++....+..+ .+ ..++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            789999888999999999999999999999777777788888999999764 5654444455 44 57899999999998


Q ss_pred             ccCchhhhcCCCCcEEECcCCccccCCc-hhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcch
Q 047035          600 GQIPSTLFRSTELLTLDLRDNKFFGRIP-DQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCF  678 (783)
Q Consensus       600 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  678 (783)
                       .+|......++|+.|++++|...+.+| +.|.++++|++|++++|+++ .+|..  .+.+|+.|.+.+++-...+|+ +
T Consensus       168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l  242 (350)
T 4ay9_X          168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-L  242 (350)
T ss_dssp             -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-T
T ss_pred             -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-c
Confidence             566666677889999998655445666 46899999999999999999 45542  356777777777766678884 4


Q ss_pred             hhc
Q 047035          679 VNM  681 (783)
Q Consensus       679 ~~~  681 (783)
                      .++
T Consensus       243 ~~l  245 (350)
T 4ay9_X          243 EKL  245 (350)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.3e-19  Score=199.25  Aligned_cols=193  Identities=24%  Similarity=0.335  Sum_probs=108.1

Q ss_pred             CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035          419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL  498 (783)
Q Consensus       419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  498 (783)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|    ..+++|++|++++|++++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            67778888877775 66544  266777777777776 566    235677777777777766 444 433  6666666


Q ss_pred             cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035          499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS  578 (783)
Q Consensus       499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  578 (783)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.  ++|+.|+|++|+++ .
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            6666665 443   35666666666666664 443   34566666666666654 444 43  55666666666655 3


Q ss_pred             cccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhC
Q 047035          579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ  656 (783)
Q Consensus       579 ~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  656 (783)
                      +|. +. .+|                 +...+.|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..++.
T Consensus       195 lp~-~~-~~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          195 LPA-VP-VRN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCC-CC--------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hhh-HH-Hhh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            443 21 133                 000011155555555554 34554444555555555555555555554444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.1e-18  Score=170.06  Aligned_cols=156  Identities=24%  Similarity=0.244  Sum_probs=123.0

Q ss_pred             cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc-ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccC
Q 047035          518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN  595 (783)
Q Consensus       518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~  595 (783)
                      +.+++++|.++. +|..+.  ..+++|++++|++++..| ..|..+++|++|++++|++++..+..+ .+++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            466666666653 454443  345677777777776544 346777777778887777776666666 778888888888


Q ss_pred             CcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       596 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      |.+++..|..|.++++|++|+|++|++.+..|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            88887777778889999999999999998888899999999999999999998889999999999999999999998766


Q ss_pred             c
Q 047035          676 S  676 (783)
Q Consensus       676 ~  676 (783)
                      -
T Consensus       171 l  171 (220)
T 2v70_A          171 L  171 (220)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=5e-18  Score=167.38  Aligned_cols=153  Identities=21%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035          518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN  596 (783)
Q Consensus       518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n  596 (783)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|+|++|++.+..|..+ ++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555554 3343332  456666666666665555556666666666666666666556555 6666677777777


Q ss_pred             cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCccc
Q 047035          597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS  673 (783)
Q Consensus       597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  673 (783)
                      .+++..+..|.++++|+.|+|++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            77644445567788888888888888887788888888888888888888877777788888889999999988753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.5e-18  Score=176.38  Aligned_cols=171  Identities=27%  Similarity=0.336  Sum_probs=84.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035           70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN  149 (783)
Q Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~  149 (783)
                      +..+++|++|++++|.+...      +.+..+++|++|+|++|.+++..+  +..+++|++|++++|.+.+. +  .+.+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~--~l~~  110 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S--SLKD  110 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G--GGTT
T ss_pred             hhhcCcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h--hhcc
Confidence            34455566666666655443      224555566666666665554322  55556666666666655553 2  3555


Q ss_pred             CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035          150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL  229 (783)
Q Consensus       150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  229 (783)
                      +++|++|++++|.+....   .+..+++|++|++++|++++. +.+..+++|++|++++|.+++. +  .+..+++|++|
T Consensus       111 l~~L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L  183 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-V--PLAGLTKLQNL  183 (291)
T ss_dssp             CTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC-G--GGTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc-h--hhcCCCccCEE
Confidence            555555555555555431   344555555555555555433 3344444444444444444322 1  14444444444


Q ss_pred             EccCccccccCCccccCCCCCCEEEcccccC
Q 047035          230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHL  260 (783)
Q Consensus       230 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  260 (783)
                      ++++|.+++ ++ .+..+++|+.|++++|.+
T Consensus       184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          184 YLSKNHISD-LR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred             ECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence            444444442 12 244444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3e-18  Score=182.97  Aligned_cols=175  Identities=20%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             cEEECcCccccccCCCcccCCCCccEEEccCcccccccccccc-cCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCC
Q 047035          470 EYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK  548 (783)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  548 (783)
                      +.++++++.+.. +|..+.  +.++.|++++|.+++..+..+. .+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            355555555543 333221  2345555555555544444444 455555555555555544444555555555555555


Q ss_pred             CcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh---hcCCCCcEEECcCCcccc
Q 047035          549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL---FRSTELLTLDLRDNKFFG  624 (783)
Q Consensus       549 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~  624 (783)
                      |++++..+..|..+++|++|+|++|++.+..|..+ .+++|++|+|++|++++..+..|   ..+++|+.|+|++|++.+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            55554444445555555555555555544444444 44445555555554442222222   234444444444444443


Q ss_pred             CCchhccCCcC--CCEEeCcCCccc
Q 047035          625 RIPDQINNHSE--LRVLLLRGNYLQ  647 (783)
Q Consensus       625 ~~p~~l~~l~~--L~~L~L~~N~l~  647 (783)
                      ..+..+..++.  ++.|+|++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            33333444433  234444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.5e-18  Score=176.35  Aligned_cols=171  Identities=25%  Similarity=0.376  Sum_probs=95.1

Q ss_pred             cCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEE
Q 047035          465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL  544 (783)
Q Consensus       465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  544 (783)
                      .+++|++|++++|.+...  +.+..+++|++|++++|.+++..+  +..+++|+                        +|
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~------------------------~L   95 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG------------------------WL   95 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC------------------------EE
T ss_pred             hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCC------------------------EE
Confidence            345566666666655432  224445555555555555543322  44444444                        44


Q ss_pred             ECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcccc
Q 047035          545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG  624 (783)
Q Consensus       545 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  624 (783)
                      ++++|++++ +| .+..+++|++|++++|++.+ ++....+++|++|++++|++++.  ..+..+++|+.|++++|++.+
T Consensus        96 ~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             ECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             ECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            555444442 22 24555555555555555543 22222555566666666665532  456666677777777777665


Q ss_pred             CCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       625 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      ..|  +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            443  6667777777777777664 33 36677777777777777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1e-17  Score=166.29  Aligned_cols=155  Identities=21%  Similarity=0.178  Sum_probs=116.5

Q ss_pred             CcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccC
Q 047035          517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN  595 (783)
Q Consensus       517 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~  595 (783)
                      .+.++.+++.+. .+|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++....+..+ .+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            445666666555 4444332  566777777777776666667777777777777777755444555 677777777777


Q ss_pred             CcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       596 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      |++++..+..|..+++|++|+|++|++. .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            7777666666788888999999999887 778888889999999999999987767778899999999999999988765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.4e-18  Score=193.45  Aligned_cols=192  Identities=17%  Similarity=0.286  Sum_probs=137.3

Q ss_pred             CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEE
Q 047035          418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY  497 (783)
Q Consensus       418 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  497 (783)
                      ..+..+.+..+.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|++.+..+  +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            345566677777665433  456778888888888876 4442  5678888888888888876443  77788888888


Q ss_pred             ccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc
Q 047035          498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG  577 (783)
Q Consensus       498 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  577 (783)
                      |++|.+.+ ++ .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+
T Consensus        94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            88888774 23 577777888888888887753  3477777888888888877754  457777778888888887776


Q ss_pred             ccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccC
Q 047035          578 SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR  625 (783)
Q Consensus       578 ~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  625 (783)
                      ..| ...+++|+.|+|++|++++ +| .+..+++|+.|+|++|++.+.
T Consensus       168 ~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          168 IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             chh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            555 2277777777777777774 33 467777777777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=164.75  Aligned_cols=154  Identities=17%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             EEEccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035          495 WLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN  573 (783)
Q Consensus       495 ~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  573 (783)
                      .+++++|.++. +|..+  ...+++|++++|.+++..| ..|..+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555555542 34333  2344566666666655433 33556666666666666666555556666666666666666


Q ss_pred             cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035          574 RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       574 ~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                      ++.+..+..+ .+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            6665555555 66666667777777766667777777777777777777777777777777777778888777775543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.2e-17  Score=162.79  Aligned_cols=152  Identities=18%  Similarity=0.182  Sum_probs=114.1

Q ss_pred             cEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035          494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN  573 (783)
Q Consensus       494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  573 (783)
                      +.++++++.++ .+|..+  .++++.|++++|.+.+..+..|..+++|+.|++++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45566666665 344433  256777777777777666667777777777777777777777777777778888888888


Q ss_pred             cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          574 RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       574 ~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      +++...+..+ .+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7775555555 67888888888888887777888888888888888888887777778888888888888888864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.6e-17  Score=187.96  Aligned_cols=172  Identities=30%  Similarity=0.360  Sum_probs=87.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035           70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN  149 (783)
Q Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~  149 (783)
                      +..+++|+.|++++|.+...      +.+..+++|++|+|++|.+.+..+  +..+++|++|+|++|.+.+. +  .+..
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~--~l~~  107 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S--SLKD  107 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T--TSTT
T ss_pred             hhcCCCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h--hhcc
Confidence            34455566666665555432      234555556666665555554332  55555555555555555543 2  3555


Q ss_pred             CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035          150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL  229 (783)
Q Consensus       150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  229 (783)
                      +++|++|+|++|.+....   .+..+++|+.|+|++|.+++. +.                         +..+++|+.|
T Consensus       108 l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l-~~-------------------------l~~l~~L~~L  158 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI-TV-------------------------LSRLTKLDTL  158 (605)
T ss_dssp             CTTCCEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCC-GG-------------------------GGSCTTCSEE
T ss_pred             CCCCCEEEecCCCCCCCc---cccCCCccCEEECCCCccCCc-hh-------------------------hcccCCCCEE
Confidence            555555555555555431   344555555555555555433 33                         4444555555


Q ss_pred             EccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035          230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       230 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      +|++|.+.+..|  +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+.
T Consensus       159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred             ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence            555555444333  44555555555555555432 2 3455555555555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=6.8e-17  Score=160.40  Aligned_cols=155  Identities=21%  Similarity=0.245  Sum_probs=122.3

Q ss_pred             ccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCC
Q 047035          493 LRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE  572 (783)
Q Consensus       493 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  572 (783)
                      -+.++.+++.++ .+|..+  .++|++|++++|.+.+..|..|.++++|++|++++|++.+..+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345666666665 445444  36788888888888877777788888888888888888765556678888888888888


Q ss_pred             ccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035          573 NRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       573 N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                      |++++..+..+ .+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            88887666666 7888888888888888 788888899999999999999987777778889999999999999886543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.1e-17  Score=160.14  Aligned_cols=152  Identities=16%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             CCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035          514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY  592 (783)
Q Consensus       514 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~  592 (783)
                      +++|+.|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++.+..+..+ .+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344444555554444 233 3444555555555555443  12245555666666666666655455555 566666666


Q ss_pred             ccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          593 LQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       593 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      +++|.+++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            66666666666777777777777777777334555 57777788888888887774 34 67778888888888887653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=3.6e-17  Score=174.59  Aligned_cols=177  Identities=24%  Similarity=0.221  Sum_probs=151.6

Q ss_pred             CeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCccc-CCCCccEEEccCcccccccccccccCCCCcEEEcc
Q 047035          445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM-NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS  523 (783)
Q Consensus       445 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  523 (783)
                      +.++++++.++ .+|....   +.++.|++++|++++..+..+. .+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57899999987 6776542   5689999999999987777777 89999999999999998888889999999999999


Q ss_pred             CCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc----CcCCCcEEEccCCccc
Q 047035          524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL----NLSSIMHLYLQNNALS  599 (783)
Q Consensus       524 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~l~~L~~L~L~~n~l~  599 (783)
                      +|.+.+..+..|.++++|+.|+|++|++++..|..|..+++|++|+|++|++.+..+..+    .+++|+.|+|++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999998888889999999999999999998888899999999999999999986555443    4889999999999999


Q ss_pred             ccCchhhhcCCC--CcEEECcCCccccC
Q 047035          600 GQIPSTLFRSTE--LLTLDLRDNKFFGR  625 (783)
Q Consensus       600 ~~~p~~l~~l~~--L~~L~Ls~N~l~~~  625 (783)
                      +..+..+..++.  ++.|+|++|.+...
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCC
Confidence            666677888876  48899999998643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.6e-17  Score=168.69  Aligned_cols=168  Identities=23%  Similarity=0.310  Sum_probs=92.8

Q ss_pred             CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCC
Q 047035          492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS  571 (783)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  571 (783)
                      ++..++++++.+++..  .+..+++|++|++++|.+.. +| .++.+++|+.|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3344444444444222  24444555555555555542 23 34555555555555555553322  5555555555565


Q ss_pred             CcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035          572 ENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       572 ~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                      +|++.+ +|.... ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|++++.  
T Consensus        94 ~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           94 RNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            555553 222223 566666666666653 23 466666666666666666543 3 466666677777777766654  


Q ss_pred             cchhCCCCCCEEecCCCcCccc
Q 047035          652 IALCQLQKLGILDLSHNKLNGS  673 (783)
Q Consensus       652 ~~l~~l~~L~~L~ls~N~l~g~  673 (783)
                      ..+..+++|+.|++++|++++.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHhccCCCCCEEeCCCCcccCC
Confidence            4566667777777777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.8e-17  Score=156.95  Aligned_cols=151  Identities=18%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             CCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEE
Q 047035          466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL  545 (783)
Q Consensus       466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  545 (783)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            3445555555555442 22 3444555555555555443  122445555555555555555555555555555566666


Q ss_pred             CCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcc
Q 047035          546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF  622 (783)
Q Consensus       546 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  622 (783)
                      +++|++++..|..+..+++|++|++++|+..+.+|....+++|++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            6666555555555555555555555555522233321134444444444444432 22 333444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=2.2e-19  Score=202.02  Aligned_cols=105  Identities=28%  Similarity=0.318  Sum_probs=47.7

Q ss_pred             CCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCC
Q 047035          565 LQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN  644 (783)
Q Consensus       565 L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  644 (783)
                      |+.|++++|++++ +|....+++|+.|+|++|.++ .+|..+.++++|+.|+|++|++++ +| .++.+++|+.|+|++|
T Consensus       443 L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             ceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            3444444444433 233114444444444444444 444444444444444444444443 33 4444444444444444


Q ss_pred             cccccC-CcchhCCCCCCEEecCCCcCccc
Q 047035          645 YLQGQI-PIALCQLQKLGILDLSHNKLNGS  673 (783)
Q Consensus       645 ~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~  673 (783)
                      ++++.+ |..++.+++|+.|++++|++++.
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            444443 44444444455555555544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=5.7e-19  Score=198.64  Aligned_cols=120  Identities=23%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             CcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcC
Q 047035          541 LDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD  619 (783)
Q Consensus       541 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  619 (783)
                      |+.|++++|++++ +|. ++.+++|+.|+|++|+++ .+|..+ .+++|+.|+|++|.+++ +| .+.++++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            3444444444442 333 444444444444444444 334333 44444555555555543 44 555666666666666


Q ss_pred             CccccCC-chhccCCcCCCEEeCcCCcccccCCcc---hhCCCCCCEEec
Q 047035          620 NKFFGRI-PDQINNHSELRVLLLRGNYLQGQIPIA---LCQLQKLGILDL  665 (783)
Q Consensus       620 N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~l  665 (783)
                      |++++.. |..++.+++|+.|+|++|++++..|..   +..+++|+.||+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            6665554 666666666666666666666544321   233666666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.1e-16  Score=150.96  Aligned_cols=132  Identities=23%  Similarity=0.258  Sum_probs=108.6

Q ss_pred             cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccc-cc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcC
Q 047035          542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIAS-SL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD  619 (783)
Q Consensus       542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  619 (783)
                      +.+++++|+++ .+|..+..  ++++|++++|++.+..+. .+ .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56666666664 55554433  677778888877765554 24 788888888888888888888899999999999999


Q ss_pred             CccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          620 NKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       620 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      |++.+..|..+.++++|+.|+|++|++++..|..+..+++|+.|++++|+++|..|-
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999988888899999999999999999999999999999999999999999988764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=5.4e-17  Score=164.70  Aligned_cols=170  Identities=21%  Similarity=0.268  Sum_probs=93.9

Q ss_pred             CCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEE
Q 047035          441 MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL  520 (783)
Q Consensus       441 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  520 (783)
                      +.++..++++++.++ .++  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++               
T Consensus        18 l~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~---------------   77 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD---------------   77 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC---------------
T ss_pred             HHHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC---------------
Confidence            444555556666555 222  13445556666666555543 22 34444555555555555443               


Q ss_pred             EccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccc
Q 047035          521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSG  600 (783)
Q Consensus       521 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~  600 (783)
                               ..+  ++++++|+.|++++|++++ +|. +.. ++|++|++++|++++ ++....+++|++|++++|++++
T Consensus        78 ---------~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           78 ---------LSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             ---------CGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB
T ss_pred             ---------Chh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC
Confidence                     222  4444555555555555543 222 111 555666666665554 2322256666666666666653


Q ss_pred             cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccccc
Q 047035          601 QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQ  649 (783)
Q Consensus       601 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  649 (783)
                       +| .+..+++|+.|++++|++.+.  ..+..+++|+.|++++|.+++.
T Consensus       143 -~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          143 -IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             33 566777777777777777665  5677777788888888877754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.9e-17  Score=192.18  Aligned_cols=178  Identities=25%  Similarity=0.261  Sum_probs=75.6

Q ss_pred             CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCC
Q 047035          484 FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR  563 (783)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  563 (783)
                      +..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..|+.++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            334445555555555555554 34444445555555555555555 45555555555555555555555 4455555555


Q ss_pred             CCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCC-CcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035          564 QLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTE-LLTLDLRDNKFFGRIPDQINNHSELRVLLL  641 (783)
Q Consensus       564 ~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  641 (783)
                      +|++|+|++|.+. .+|..+ .+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..      |+.|++
T Consensus       294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l  366 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEI  366 (727)
T ss_dssp             TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEe
Confidence            5555555555554 444444 5555555555555555555555543321 123556666666555542      233444


Q ss_pred             cCC--------cccccCCcchhCCCCCCEEecCCCcCc
Q 047035          642 RGN--------YLQGQIPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       642 ~~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                      ++|        .+.+..+..+..+..+....+++|-+.
T Consensus       367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----------------------------------CCC
T ss_pred             ecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            444        333333444555666666667777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=7.8e-17  Score=187.11  Aligned_cols=178  Identities=22%  Similarity=0.284  Sum_probs=92.1

Q ss_pred             hhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCC
Q 047035          460 ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS  539 (783)
Q Consensus       460 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~  539 (783)
                      ...+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|++++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            344556666666666666665 34455556666777777777666 56666667777777777777776 5676777777


Q ss_pred             CCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-Cc-CCCcEEEccCCcccccCchhhhcCCCCcEEEC
Q 047035          540 YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NL-SSIMHLYLQNNALSGQIPSTLFRSTELLTLDL  617 (783)
Q Consensus       540 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  617 (783)
                      +|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+ .+ ..+..++|++|.+++.+|..      |+.|++
T Consensus       294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l  366 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEI  366 (727)
T ss_dssp             TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEe
Confidence            7777777777775 566667777777777777777777666665 22 12234567777777766643      445555


Q ss_pred             cCC--------ccccCCchhccCCcCCCEEeCcCCccc
Q 047035          618 RDN--------KFFGRIPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       618 s~N--------~l~~~~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      +.|        .+.+..+..+..+..++...++.|-+.
T Consensus       367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----------------------------------CCC
T ss_pred             ecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            555        233333334455555666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.2e-15  Score=143.54  Aligned_cols=131  Identities=21%  Similarity=0.199  Sum_probs=84.5

Q ss_pred             CCCcEEECCCCccc-ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035          539 SYLDVLLMSKNHLE-GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD  616 (783)
Q Consensus       539 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  616 (783)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+ .+++|++|++++|.+++.+|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34555555555554 44455555555555555555555543  223 566666666666666655676666777777777


Q ss_pred             CcCCccccCC-chhccCCcCCCEEeCcCCcccccCC---cchhCCCCCCEEecCCCcCc
Q 047035          617 LRDNKFFGRI-PDQINNHSELRVLLLRGNYLQGQIP---IALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       617 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~  671 (783)
                      +++|++.+.. +..+..+++|+.|++++|++++..+   ..+..+++|+.||+++|++.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777776532 2667777888888888888775544   36777888888888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.3e-15  Score=140.13  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             CCCcEEECCCCccc-ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035          539 SYLDVLLMSKNHLE-GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD  616 (783)
Q Consensus       539 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  616 (783)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++.+.  ..+ .+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555555 45555555555666666666655543  223 566666666666666655677777777788888


Q ss_pred             CcCCccccC-CchhccCCcCCCEEeCcCCcccccCC---cchhCCCCCCEEecCC
Q 047035          617 LRDNKFFGR-IPDQINNHSELRVLLLRGNYLQGQIP---IALCQLQKLGILDLSH  667 (783)
Q Consensus       617 Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~  667 (783)
                      +++|++.+. .|..+..+++|+.|++++|++++..+   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888877653 34677778888888888888876555   4677888888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.5e-15  Score=159.96  Aligned_cols=285  Identities=12%  Similarity=0.058  Sum_probs=167.0

Q ss_pred             CCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhh-------
Q 047035          344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV-------  416 (783)
Q Consensus       344 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-------  416 (783)
                      .+++.|.++++--. .-...+...+++|++|+|++|++.... ...+..+.++.+.+..|    .+|...+..       
T Consensus        25 ~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~-~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           25 NSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYS-GKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEE-ESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred             CceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEec-Ccccccccccccccccc----ccCHHHhccccccccc
Confidence            35666666543111 111122222677888888888777221 11122222344444444    345555556       


Q ss_pred             -cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccc----cccCCCcccCCC
Q 047035          417 -IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF----YGHIFPTYMNLT  491 (783)
Q Consensus       417 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~  491 (783)
                       +++|+.+++.+ .++..-+.+|.+|++|+.+++++|.+. .++...|..+.++..+....+..    ......+|.++.
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence             77778887777 666555667777788888888777776 66666777777666666655322    122233455566


Q ss_pred             Ccc-EEEccCccccccccccc----ccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCC
Q 047035          492 QLR-WLYLKNNHFTGKIKAGL----LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ  566 (783)
Q Consensus       492 ~L~-~L~L~~n~l~~~~~~~l----~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  566 (783)
                      .|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+.+++++|+++...+..|.+|++|+
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            666 44443321   111111    1233445555544321111111111256777777777777766666777777777


Q ss_pred             EEeCCCccccccccccc-CcCCCc-EEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035          567 LLDLSENRLFGSIASSL-NLSSIM-HLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL  641 (783)
Q Consensus       567 ~L~Ls~N~l~~~~p~~~-~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  641 (783)
                      .+++.+| +...-+..| ++++|+ .+++.+ .++..-+.+|.+|++|+.+++++|++...-+..|.++++|+.++.
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            7777776 554444555 777787 787777 666556677888888888888888887666677888888887753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.7e-15  Score=142.49  Aligned_cols=135  Identities=24%  Similarity=0.234  Sum_probs=88.0

Q ss_pred             CCCcEEEccCCccc-ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035          515 HGLVVLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY  592 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~  592 (783)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|..+ .+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666665 45555566666666666666666544  456666666666666666665555555 466777777


Q ss_pred             ccCCccccc-CchhhhcCCCCcEEECcCCccccCCc---hhccCCcCCCEEeCcCCcccccCCc
Q 047035          593 LQNNALSGQ-IPSTLFRSTELLTLDLRDNKFFGRIP---DQINNHSELRVLLLRGNYLQGQIPI  652 (783)
Q Consensus       593 L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~~~p~  652 (783)
                      +++|.+++. .+..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|.+. .+|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            777766642 12567777778888888887765544   46777788888888888776 4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=1.3e-15  Score=146.53  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CCcEEECcCccccccCCC-cccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035          468 SLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM  546 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  546 (783)
                      ++++|++++|++.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            444555555544443332 2444455555555555555444444555555555555555555544444555555555555


Q ss_pred             CCCcccccCcccccCCCCCCEEeCCCccccc
Q 047035          547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFG  577 (783)
Q Consensus       547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  577 (783)
                      ++|++++..|..+..+++|++|++++|++.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            5555555555555555555555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=2.2e-15  Score=158.55  Aligned_cols=287  Identities=12%  Similarity=0.054  Sum_probs=160.0

Q ss_pred             CCCCcEEEccCccccCcccCCccC-CCCccEEEcccCcCCCC-CChhhhhhcCCceEEeCCCCcccccCCccccC-----
Q 047035          368 NTKLEVLRLSNNSFSGILQLPKVK-HDLLRHLDISNNNLTGM-LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE-----  440 (783)
Q Consensus       368 l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----  440 (783)
                      +.++++|.++++- .......... +++|+.|||++|++... .+..   .++.++.+.+..|.+.   +.+|.+     
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence            3567777777641 1110001112 66777888887777510 0111   1222344444444322   234555     


Q ss_pred             ---CCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccc----cccccccccc
Q 047035          441 ---MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHF----TGKIKAGLLN  513 (783)
Q Consensus       441 ---l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~  513 (783)
                         |++|+.+++.+ .++ .++...|.+|++|+.+++.+|.+....+.+|.++.++..+....+..    ......+|.+
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               77777777777 565 56666677777777777777776666666676666666665544221    1122334555


Q ss_pred             CCCCc-EEEccCCccc-ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcE
Q 047035          514 SHGLV-VLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMH  590 (783)
Q Consensus       514 ~~~L~-~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~  590 (783)
                      +..|+ .+.+....-. ..+...-....+++.+.+.++-...........+++|+.+++++|++....+..| ++++|++
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            55555 3443322110 0000000123344555544432111111111236777777887777765555555 7777777


Q ss_pred             EEccCCcccccCchhhhcCCCCc-EEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEec
Q 047035          591 LYLQNNALSGQIPSTLFRSTELL-TLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL  665 (783)
Q Consensus       591 L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  665 (783)
                      +++.+| ++..-+.+|.+|++|+ .+++.+ .+...-+..|.++++|+.+++++|+++..-+..|.++++|+.++.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            777776 6655566777777777 777777 565555567777777777777777777666667777777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.4e-15  Score=138.33  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             CCCcEEEccCCccc-ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035          515 HGLVVLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY  592 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~  592 (783)
                      ++|+.|++++|.+. +.+|..++.+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|..+ .+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 55666666666666666666666644  556666667777777777666566555 466777777


Q ss_pred             ccCCccccc-CchhhhcCCCCcEEECcCCccccCCc---hhccCCcCCCEEeCcC
Q 047035          593 LQNNALSGQ-IPSTLFRSTELLTLDLRDNKFFGRIP---DQINNHSELRVLLLRG  643 (783)
Q Consensus       593 L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~  643 (783)
                      +++|++++. .|..+..+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777776642 33667777777777777777766555   4677777777777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=9.5e-15  Score=138.66  Aligned_cols=131  Identities=21%  Similarity=0.223  Sum_probs=99.5

Q ss_pred             cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035          542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      +.+++++++++ .+|..+  .++|++|++++|++.+..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            45555555555 334332  2466777777777665555555 6777777777777777656666788899999999999


Q ss_pred             ccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      ++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9987777778899999999999999996666667889999999999999998876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=139.58  Aligned_cols=129  Identities=27%  Similarity=0.287  Sum_probs=93.7

Q ss_pred             cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035          542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      +.+++++|.++ .+|..+.  ++|++|++++|++. .+|..+ .+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555555 3444332  45666666666665 445455 6677777777777777666677888888888888888


Q ss_pred             ccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccC
Q 047035          621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSI  674 (783)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  674 (783)
                      ++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            888877778888888888888888888666667888899999999999987644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=1.3e-13  Score=148.14  Aligned_cols=240  Identities=10%  Similarity=0.074  Sum_probs=121.3

Q ss_pred             CccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEE
Q 047035          394 LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLD  473 (783)
Q Consensus       394 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  473 (783)
                      +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+...-+.+|.+|++|+.+++.+|+++ .++...|. +.+|+.+.
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEE
T ss_pred             CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEE
Confidence            3555554443 22 333333333 2455555553 344334455556666666666665555 45555543 45566666


Q ss_pred             CcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccc-
Q 047035          474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE-  552 (783)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-  552 (783)
                      +..+ +......+|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.+....+.+|.++++|+.+.+.+|.+. 
T Consensus       210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence            6532 44444445555555555555543 33333344444 455555552 2333344444555555555555444432 


Q ss_pred             ----ccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCch
Q 047035          553 ----GNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPD  628 (783)
Q Consensus       553 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  628 (783)
                          ...+.+|.                       ++++|+.+++. +.++..-..+|.+|++|+.++|..+ +...-+.
T Consensus       286 ~~~~~I~~~aF~-----------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          286 DPEAMIHPYCLE-----------------------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTCEECTTTTT-----------------------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             CcccEECHHHhh-----------------------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence                12233344                       44455555554 2244334455666666666666443 4444445


Q ss_pred             hccCCcCCCEEeCcCCcccccCCcchhCCC-CCCEEecCCCc
Q 047035          629 QINNHSELRVLLLRGNYLQGQIPIALCQLQ-KLGILDLSHNK  669 (783)
Q Consensus       629 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~  669 (783)
                      .|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            56666 677777777766655555566663 56677665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=1.5e-13  Score=147.71  Aligned_cols=234  Identities=7%  Similarity=0.032  Sum_probs=153.4

Q ss_pred             CccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccC
Q 047035          435 PYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS  514 (783)
Q Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~  514 (783)
                      ..+|.++ +|+.+.+..+ ++ .++...|.++ +|+.+.+.. .+......+|.+|++|+.+++.+|.++.....+|. +
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~  202 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y  202 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred             HhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence            3444443 4666665544 33 4555555553 466666654 44444455666666666666666666644444444 4


Q ss_pred             CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEc
Q 047035          515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYL  593 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L  593 (783)
                      .+|+.+.+..+ +......+|.++++|+.+.+..+ ++..-..+|.+ .+|+.+++. +.+...-+..| ++++|+.+++
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEe
Confidence            66777776643 55555566667777777777654 44344455555 567777773 34444444555 7777888877


Q ss_pred             cCCccc-----ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035          594 QNNALS-----GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN  668 (783)
Q Consensus       594 ~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  668 (783)
                      .+|.+.     ..-+.+|.+|++|+.+++.+ .+...-...|.++++|+.+.+..| ++..-+..|.++ +|+.+++++|
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence            776654     35577899999999999994 576666678999999999999665 665667789999 9999999999


Q ss_pred             cCcccCCcchhhc
Q 047035          669 KLNGSIPSCFVNM  681 (783)
Q Consensus       669 ~l~g~iP~~~~~~  681 (783)
                      .+....+..|.++
T Consensus       356 ~~~~l~~~~F~~~  368 (401)
T 4fdw_A          356 TPPQVFEKVWYGF  368 (401)
T ss_dssp             SCCBCCCSSCCCS
T ss_pred             CCcccccccccCC
Confidence            8765444445443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=5.8e-14  Score=134.95  Aligned_cols=127  Identities=28%  Similarity=0.323  Sum_probs=82.6

Q ss_pred             cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035          518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN  596 (783)
Q Consensus       518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n  596 (783)
                      +.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..|..+++|++|++++|++++..+..+ ++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555555 3343332  35666666666665 455666666666666666666665555555 6666777777777


Q ss_pred             cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      .+++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7766666667777777777777777776555567777778888888777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=2.8e-13  Score=146.31  Aligned_cols=146  Identities=10%  Similarity=0.055  Sum_probs=75.4

Q ss_pred             ccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCC
Q 047035          436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH  515 (783)
Q Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~  515 (783)
                      ..+.++..++.+.+..+..  .+....|..+..++.+......+.   ..+|..+.+|+.+.+.++ ++.....+|.+|.
T Consensus       247 ~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~  320 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT  320 (394)
T ss_dssp             STTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred             ccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC
Confidence            3445555555555554432  234444555555555555444322   234555556666665443 3334445566666


Q ss_pred             CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEE
Q 047035          516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHL  591 (783)
Q Consensus       516 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L  591 (783)
                      +|+.+++..+ ++.....+|.++++|+.+.+..+ ++..-..+|.+|.+|+.+++..+- . .+...+ ++++|+.+
T Consensus       321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            6666666433 44444555666666666666554 443445566666666666665431 1 222334 55555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7e-14  Score=132.64  Aligned_cols=131  Identities=21%  Similarity=0.230  Sum_probs=75.2

Q ss_pred             cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035          518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN  596 (783)
Q Consensus       518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n  596 (783)
                      +.++++++.+. .+|..+  .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+ .+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            44445555444 223222  1345555555555554444445555556666666665554444444 5566666666666


Q ss_pred             cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035          597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP  651 (783)
Q Consensus       597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  651 (783)
                      ++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6665555556666777777777777765544455667777777777777765544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.52  E-value=4.6e-13  Score=144.56  Aligned_cols=213  Identities=10%  Similarity=0.041  Sum_probs=137.0

Q ss_pred             CccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCC
Q 047035          388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA  467 (783)
Q Consensus       388 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  467 (783)
                      .+..+.+|+.+++..+ ++ .++...+..+..|+.+.+..+...  +.........|+.+.+.... + .+....+..+.
T Consensus       180 ~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~  253 (394)
T 4fs7_A          180 LFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCT  253 (394)
T ss_dssp             TTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCS
T ss_pred             cccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccc
Confidence            3344444555544433 21 333344445555665555544321  22333445667777775432 2 45566677888


Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS  547 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  547 (783)
                      .++.+.+..+.. ......|..+..++.+....+.+   ....|..+.+|+.+.+.++ +......+|.++++|+.+++.
T Consensus       254 ~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          254 DLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             SCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             cceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            888888876643 33456677888888888776543   2446777888888888765 555666778888889988886


Q ss_pred             CCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEE
Q 047035          548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTL  615 (783)
Q Consensus       548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  615 (783)
                      .+ ++..-..+|.+|.+|+.+++..+ +...-...| ++++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus       329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            54 65555678888888999988776 554445556 8888998888765 32 345677888877764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=3.4e-16  Score=151.65  Aligned_cols=153  Identities=22%  Similarity=0.289  Sum_probs=102.3

Q ss_pred             ccCCCCcEEEccCCcccccCCC------CcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-C
Q 047035          512 LNSHGLVVLDISNNLLSGHIPC------WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-N  584 (783)
Q Consensus       512 ~~~~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~  584 (783)
                      .....++.++++.+.+.+.+|.      .++.+++|++|++++|++++ +| .+..+++|++|++++|++. .+|..+ .
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344555566666666655554      56666677777777777664 45 6666777777777777766 455554 5


Q ss_pred             cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCc-hhccCCcCCCEEeCcCCcccccCCcc----------
Q 047035          585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIP-DQINNHSELRVLLLRGNYLQGQIPIA----------  653 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~----------  653 (783)
                      +++|++|++++|++++ +| .+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+.+|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            5777777777777764 44 57777778888888877764322 46777788888888888877665542          


Q ss_pred             hhCCCCCCEEecCCCcCc
Q 047035          654 LCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       654 l~~l~~L~~L~ls~N~l~  671 (783)
                      +..+++|+.||  +|+++
T Consensus       170 ~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          170 VKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHCSSCSEEC--CGGGT
T ss_pred             HHhCCCcEEEC--CcccC
Confidence            67788888776  56554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=8e-14  Score=132.03  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=86.6

Q ss_pred             CCCCCcEEECCCCcccccCcccccCC-CCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEE
Q 047035          537 NFSYLDVLLMSKNHLEGNIPVQINNF-RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL  615 (783)
Q Consensus       537 ~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  615 (783)
                      ++++|+.|++++|+++ .+|. +..+ ++|++|++++|++.+. +....+++|++|++++|.+++..|..+..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3445555555555554 2232 2222 2566666666666543 222266667777777777765444555788888888


Q ss_pred             ECcCCccccCCch--hccCCcCCCEEeCcCCcccccCCcc----hhCCCCCCEEecCCCcCc
Q 047035          616 DLRDNKFFGRIPD--QINNHSELRVLLLRGNYLQGQIPIA----LCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       616 ~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~  671 (783)
                      ++++|++. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.||+++|+..
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888884 4665  7788888888888888887 45654    888999999999988765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.1e-13  Score=131.05  Aligned_cols=130  Identities=22%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             ccCCCCcEEEccCCcccccCCCCcCCC-CCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCc
Q 047035          512 LNSHGLVVLDISNNLLSGHIPCWIGNF-SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIM  589 (783)
Q Consensus       512 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~  589 (783)
                      .++.+|+.|++++|.+.. +|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+ .+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            344555555555555552 232 2232 2556666666655543  345566666666666666654443443 566666


Q ss_pred             EEEccCCcccccCch--hhhcCCCCcEEECcCCccccCCchh----ccCCcCCCEEeCcCCccc
Q 047035          590 HLYLQNNALSGQIPS--TLFRSTELLTLDLRDNKFFGRIPDQ----INNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       590 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~  647 (783)
                      +|++++|.++ .+|.  .+..+++|+.|++++|++. .+|..    +..+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666666664 4554  6667777777777777775 34543    677777778887777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.1e-15  Score=148.06  Aligned_cols=160  Identities=20%  Similarity=0.219  Sum_probs=91.9

Q ss_pred             hcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcE
Q 047035          464 IRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDV  543 (783)
Q Consensus       464 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  543 (783)
                      .....++.++++.+.+.+..|.                 ++ .+|..+..+++|++|++++|.+.+ +| .+..+++|+.
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~   74 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRI   74 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCE
T ss_pred             HhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCE
Confidence            3445566666666666554443                 00 112245555555666665555554 44 5555566666


Q ss_pred             EECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCc-hhhhcCCCCcEEECcCCcc
Q 047035          544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIP-STLFRSTELLTLDLRDNKF  622 (783)
Q Consensus       544 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l  622 (783)
                      |++++|+++ .+|..+..+++|++|++++|++.+ +|....+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus        75 L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           75 LSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             EECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            666666655 455555555666666666666654 3422256666666666666663221 3566677777777777777


Q ss_pred             ccCCch----------hccCCcCCCEEeCcCCccc
Q 047035          623 FGRIPD----------QINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       623 ~~~~p~----------~l~~l~~L~~L~L~~N~l~  647 (783)
                      .+.+|.          .+..+++|+.|+  +|.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            665554          266777777776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=9.3e-13  Score=123.66  Aligned_cols=109  Identities=23%  Similarity=0.236  Sum_probs=90.6

Q ss_pred             CCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCC
Q 047035          565 LQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN  644 (783)
Q Consensus       565 L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  644 (783)
                      .+++++++|++.. +|..+ .+.|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|
T Consensus        11 ~~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4567777777763 45443 367888888888888777888899999999999999998777777889999999999999


Q ss_pred             cccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035          645 YLQGQIPIALCQLQKLGILDLSHNKLNGSIP  675 (783)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  675 (783)
                      ++++..|..|..+++|+.|+|++|++++..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997777779999999999999999987665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=2.9e-12  Score=120.63  Aligned_cols=107  Identities=21%  Similarity=0.228  Sum_probs=86.2

Q ss_pred             CEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035          566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY  645 (783)
Q Consensus       566 ~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  645 (783)
                      +.+++++|++. .+|..+ .+.|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCC-ccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            56777777664 455444 2677888888888887778888889999999999999987666667889999999999999


Q ss_pred             ccccCCcchhCCCCCCEEecCCCcCcccC
Q 047035          646 LQGQIPIALCQLQKLGILDLSHNKLNGSI  674 (783)
Q Consensus       646 l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  674 (783)
                      +++..+..|..+++|+.|++++|++....
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99666666999999999999999998643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.35  E-value=1.4e-10  Score=125.13  Aligned_cols=84  Identities=8%  Similarity=0.125  Sum_probs=37.5

Q ss_pred             CcCCCC-CCCEEEccCccCcccCCcccccCCCCCcEEEccCcc---ccccCCccccCCCCCCEEEcccccCCccCchhhc
Q 047035          194 ELAPFR-NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN---LEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA  269 (783)
Q Consensus       194 ~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~  269 (783)
                      +|.+++ .|+.+.+..+ ++ .|...+|.+|++|+.+.+..+.   ++..-..+|..+.+|+.+.+..+ ++.....+|.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            444443 3555555433 22 3444555555555555554432   33233344445555554444332 2222233444


Q ss_pred             CCCCCCEEeCc
Q 047035          270 NLTSLEYLALS  280 (783)
Q Consensus       270 ~l~~L~~L~L~  280 (783)
                      .+.+|+.+.+.
T Consensus       135 ~c~~L~~i~lp  145 (394)
T 4gt6_A          135 HCEELDTVTIP  145 (394)
T ss_dssp             TCTTCCEEECC
T ss_pred             hhccccccccc
Confidence            44444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=8.8e-11  Score=126.63  Aligned_cols=108  Identities=12%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             ccCCCC-CCCEEECcCCcCcccCC-CcCCCCCCCEEEccCcc---CcccCCcccccCCCCCcEEEccCccccccCCcccc
Q 047035          171 GLGNLT-NLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNL---LNGSVESKGICELKNLTELDLGENNLEGQLPWCLS  245 (783)
Q Consensus       171 ~l~~l~-~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~---l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  245 (783)
                      +|.+++ .|+.+.+..+ ++.... +|.++.+|+.+.+..+.   ++ .+...+|..+.+|+.+.+..+ +......+|.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhh
Confidence            455553 4777777543 444434 67777777777776542   32 444456677777776666443 3334445667


Q ss_pred             CCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCC
Q 047035          246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN  282 (783)
Q Consensus       246 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  282 (783)
                      .+.+|+.+.+..+ +......+|..+..|+.+.+..+
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce
Confidence            7777777777543 23234455666666766666544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=6.5e-12  Score=117.85  Aligned_cols=105  Identities=23%  Similarity=0.240  Sum_probs=58.7

Q ss_pred             cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035          542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..+ .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34444444444 2333332  445555555555554444444 5555555555555555444445566666666666666


Q ss_pred             ccccCCchhccCCcCCCEEeCcCCccccc
Q 047035          621 KFFGRIPDQINNHSELRVLLLRGNYLQGQ  649 (783)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  649 (783)
                      ++.+..|..+..+++|+.|+|++|.+...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            66655555566667777777777766643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1e-11  Score=116.90  Aligned_cols=104  Identities=22%  Similarity=0.265  Sum_probs=60.5

Q ss_pred             cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035          542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN  620 (783)
Q Consensus       542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  620 (783)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++.+..|..+ .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444444443 3443332  455555555555555545444 5555555666666655444444566677777777777


Q ss_pred             ccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          621 KFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      ++.+..+..+..+++|+.|+|++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            7765555557777777777777777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=4e-13  Score=142.91  Aligned_cols=185  Identities=18%  Similarity=0.109  Sum_probs=87.1

Q ss_pred             CCCcEEECcCccccccCCCccc-----CCCCccEEEccCccccccccccc-ccCCCCcEEEccCCcccccCCCCcCCCCC
Q 047035          467 ASLEYLDVSENNFYGHIFPTYM-----NLTQLRWLYLKNNHFTGKIKAGL-LNSHGLVVLDISNNLLSGHIPCWIGNFSY  540 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  540 (783)
                      +.|+.|++++|.++......+.     ..++|++|++++|.++......+ ..+++|+.|+|++|.++......++    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~----  147 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR----  147 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----
Confidence            5677777777776543222221     22466666666666543322222 1233455555555554432222221    


Q ss_pred             CcEEECCCCcccccCcccc-cCCCCCCEEeCCCccccc----cccccc-CcCCCcEEEccCCcccc----cCchhhhcCC
Q 047035          541 LDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFG----SIASSL-NLSSIMHLYLQNNALSG----QIPSTLFRST  610 (783)
Q Consensus       541 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~----~~p~~~-~l~~L~~L~L~~n~l~~----~~p~~l~~l~  610 (783)
                                      ..+ ...++|++|+|++|.++.    .++..+ ..++|++|+|++|.++.    .++..+...+
T Consensus       148 ----------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          148 ----------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             ----------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred             ----------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence                            011 123445555555555432    122222 34455555555555542    2244455556


Q ss_pred             CCcEEECcCCccccC----CchhccCCcCCCEEeCcCCcccccCCcchhCCCC-----CCEEe--cCCCcCc
Q 047035          611 ELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK-----LGILD--LSHNKLN  671 (783)
Q Consensus       611 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-----L~~L~--ls~N~l~  671 (783)
                      +|+.|+|++|.+++.    ++..+...++|+.|+|++|.+++.-...+..+..     |+.+.  +..|.++
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            666777777666542    3333445566777777777666544444433221     55555  5555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=5.8e-13  Score=141.65  Aligned_cols=166  Identities=19%  Similarity=0.163  Sum_probs=115.4

Q ss_pred             CCCcEEEccCCcccccCCCCcC-----CCCCCcEEECCCCcccccCcccc-cCCCCCCEEeCCCccccccccccc-----
Q 047035          515 HGLVVLDISNNLLSGHIPCWIG-----NFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL-----  583 (783)
Q Consensus       515 ~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----  583 (783)
                      +.|+.|++++|.++......+.     ..++|+.|+|++|.++......+ ..+++|++|+|++|++.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4455666666655432222222     12567777777777654332222 234578889999998865433332     


Q ss_pred             -CcCCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeCcCCccccc----C
Q 047035          584 -NLSSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGNYLQGQ----I  650 (783)
Q Consensus       584 -~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~  650 (783)
                       ..+.|++|+|++|.++.    .++..+..+++|++|+|++|.+.+.    ++..+...++|+.|+|++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence             35789999999999974    3555667889999999999999754    356677888999999999999854    3


Q ss_pred             CcchhCCCCCCEEecCCCcCcccCCcchhh
Q 047035          651 PIALCQLQKLGILDLSHNKLNGSIPSCFVN  680 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  680 (783)
                      +..+...++|++|||++|+++..-...+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            445667899999999999998654444544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=2.6e-10  Score=120.79  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=84.1

Q ss_pred             cEEECCCC-cccccCcccccCCCCCCEEeCCC-ccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECc
Q 047035          542 DVLLMSKN-HLEGNIPVQINNFRQLQLLDLSE-NRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR  618 (783)
Q Consensus       542 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  618 (783)
                      ..++++++ +++ .+|. +..+++|++|+|++ |++.+..+..+ .+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34678887 777 5777 88888899999986 88887777777 88888888888888888888888888888888888


Q ss_pred             CCccccCCchhccCCcCCCEEeCcCCccccc
Q 047035          619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQ  649 (783)
Q Consensus       619 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  649 (783)
                      +|++++..|..+..++ |+.|+|++|.+...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            8888766555666555 88888888888743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=2.4e-10  Score=121.03  Aligned_cols=103  Identities=22%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             EEEccCc-ccccccccccccCCCCcEEEccC-CcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCC
Q 047035          495 WLYLKNN-HFTGKIKAGLLNSHGLVVLDISN-NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE  572 (783)
Q Consensus       495 ~L~L~~n-~l~~~~~~~l~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  572 (783)
                      .++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|+++++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566666 665 3555 66667777777775 777766666677777777777777777776666777777777777777


Q ss_pred             cccccccccccCcCCCcEEEccCCccc
Q 047035          573 NRLFGSIASSLNLSSIMHLYLQNNALS  599 (783)
Q Consensus       573 N~l~~~~p~~~~l~~L~~L~L~~n~l~  599 (783)
                      |++++..+..+....|+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            777655555553333777777777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.99  E-value=3.5e-08  Score=105.64  Aligned_cols=133  Identities=13%  Similarity=0.085  Sum_probs=77.8

Q ss_pred             ccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCC
Q 047035          436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH  515 (783)
Q Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~  515 (783)
                      ..+..+..|+.+.+..+ +. .+....+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.+|.
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             cccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            34455556666665443 22 344455556666666666544 33334455666666666666443 3334445566667


Q ss_pred             CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035          516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN  573 (783)
Q Consensus       516 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  573 (783)
                      +|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.+|++|+.+.+..+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            7777777666666555666677777777777543 44344556777777777776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.99  E-value=5.9e-08  Score=103.86  Aligned_cols=166  Identities=12%  Similarity=0.045  Sum_probs=113.5

Q ss_pred             ccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCC
Q 047035          438 IGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL  517 (783)
Q Consensus       438 l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L  517 (783)
                      +..+..+..+.+.....  .+....+..+..|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|
T Consensus       190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            44455555555544322  334455667788888888654 34444567788888888888765 555556778888888


Q ss_pred             cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035          518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN  596 (783)
Q Consensus       518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n  596 (783)
                      +.+.+..+ +.......|.++++|+.+.+.++.++..-..+|.+|.+|+.++|..+ +...-...| ++++|+.+.+..+
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88888654 55455667888888999988888887666778888888999988754 443334455 7888888888654


Q ss_pred             cccccCchhhhcCC
Q 047035          597 ALSGQIPSTLFRST  610 (783)
Q Consensus       597 ~l~~~~p~~l~~l~  610 (783)
                       ++..-..+|.++.
T Consensus       344 -v~~I~~~aF~~c~  356 (379)
T 4h09_A          344 -ITLIESGAFEGSS  356 (379)
T ss_dssp             -CCEECTTTTTTSS
T ss_pred             -cCEEchhHhhCCC
Confidence             4434455666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=1.5e-09  Score=114.10  Aligned_cols=59  Identities=20%  Similarity=0.020  Sum_probs=30.9

Q ss_pred             ccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc--CCCCCCEEeCC
Q 047035          510 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN--NFRQLQLLDLS  571 (783)
Q Consensus       510 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls  571 (783)
                      .+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+.  .+++|++|+|+
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            3445566777766665211 1222 22 56666666666665533333332  45666666664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=6.1e-09  Score=109.52  Aligned_cols=139  Identities=14%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             CCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc---CcCCCcEEEccC--Cccccc----
Q 047035          531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL---NLSSIMHLYLQN--NALSGQ----  601 (783)
Q Consensus       531 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~l~~L~~L~L~~--n~l~~~----  601 (783)
                      ++..+..+++|+.|.+++|.-. .++. +. +++|++|++..|.+.......+   .+++|++|+|+.  |...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3345567899999999988422 2333 43 7899999999998865433333   589999999863  222111    


Q ss_pred             -Cchhh--hcCCCCcEEECcCCccccCCchhcc---CCcCCCEEeCcCCccccc----CCcchhCCCCCCEEecCCCcCc
Q 047035          602 -IPSTL--FRSTELLTLDLRDNKFFGRIPDQIN---NHSELRVLLLRGNYLQGQ----IPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       602 -~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                       +...+  ..+++|+.|+|++|.+.+..+..+.   .+++|+.|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11222  2478999999999998765544443   578999999999999874    4445567899999999999886


Q ss_pred             c
Q 047035          672 G  672 (783)
Q Consensus       672 g  672 (783)
                      .
T Consensus       321 d  321 (362)
T 2ra8_A          321 D  321 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=7.7e-08  Score=91.15  Aligned_cols=114  Identities=15%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             cccCCCCCCEEeCCCc-ccccc----ccccc-CcCCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC--
Q 047035          558 QINNFRQLQLLDLSEN-RLFGS----IASSL-NLSSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR--  625 (783)
Q Consensus       558 ~~~~l~~L~~L~Ls~N-~l~~~----~p~~~-~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~--  625 (783)
                      .+...++|++|+|++| .+...    +...+ ..++|++|+|++|.+..    .+...+...++|++|+|++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444455555555555 44321    12222 34556666666666542    2344555567788888888877653  


Q ss_pred             --CchhccCCcCCCEEeC--cCCccccc----CCcchhCCCCCCEEecCCCcCc
Q 047035          626 --IPDQINNHSELRVLLL--RGNYLQGQ----IPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       626 --~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                        +.+.+...++|+.|+|  ++|.+...    +...+...++|+.|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3455666778888888  77887654    3344566688999999998874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.36  E-value=1.6e-07  Score=88.94  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=35.7

Q ss_pred             cCCCcEEEccCCccccc----CchhhhcCCCCcEEEC--cCCccccC----CchhccCCcCCCEEeCcCCccc
Q 047035          585 LSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDL--RDNKFFGR----IPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      .++|++|+|++|.+...    +...+...++|++|+|  ++|.+...    +.+.+...++|+.|+|++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34455555555555432    3445555566777777  66666543    2334445567777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=1.5e-07  Score=93.68  Aligned_cols=65  Identities=29%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             CCCCcEEECcCCcccc--CCchhccCCcCCCEEeCcCCcccccCCcchhCCC--CCCEEecCCCcCcccCC
Q 047035          609 STELLTLDLRDNKFFG--RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ--KLGILDLSHNKLNGSIP  675 (783)
Q Consensus       609 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~g~iP  675 (783)
                      ++.|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|++++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3344444444444433  2233333444444444444444432  1122222  44445555555544444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1e-06  Score=87.62  Aligned_cols=96  Identities=25%  Similarity=0.293  Sum_probs=74.8

Q ss_pred             EeCCCcccc---ccccccc-CcCCCcEEEccCCcccc--cCchhhhcCCCCcEEECcCCccccCCchhccCCc--CCCEE
Q 047035          568 LDLSENRLF---GSIASSL-NLSSIMHLYLQNNALSG--QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS--ELRVL  639 (783)
Q Consensus       568 L~Ls~N~l~---~~~p~~~-~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  639 (783)
                      ++++.|+..   +.++... +++.|++|+|++|++++  .+|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            667777432   2222222 68999999999999997  5667888999999999999999875  3444444  99999


Q ss_pred             eCcCCcccccCCc-------chhCCCCCCEEec
Q 047035          640 LLRGNYLQGQIPI-------ALCQLQKLGILDL  665 (783)
Q Consensus       640 ~L~~N~l~~~~p~-------~l~~l~~L~~L~l  665 (783)
                      +|++|.+.+.+|.       .+..+++|+.||=
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            9999999987773       3678999998873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=1.1e-05  Score=74.18  Aligned_cols=86  Identities=10%  Similarity=-0.025  Sum_probs=60.2

Q ss_pred             cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCc-cccCCchhccCC----cCCCEEeCcCCc-ccccCCcchhCCC
Q 047035          585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK-FFGRIPDQINNH----SELRVLLLRGNY-LQGQIPIALCQLQ  658 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~  658 (783)
                      -..|++|+++++.++..--..+.++++|+.|+|++|. +++.--..+..+    ++|+.|+|++|. ++..--..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3457777777777665555566778888888888885 554433445553    478899998885 6654334577889


Q ss_pred             CCCEEecCCCcC
Q 047035          659 KLGILDLSHNKL  670 (783)
Q Consensus       659 ~L~~L~ls~N~l  670 (783)
                      +|+.|++++|+-
T Consensus       140 ~L~~L~L~~c~~  151 (176)
T 3e4g_A          140 NLKYLFLSDLPG  151 (176)
T ss_dssp             TCCEEEEESCTT
T ss_pred             CCCEEECCCCCC
Confidence            999999998863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.64  E-value=1.2e-05  Score=73.91  Aligned_cols=34  Identities=12%  Similarity=0.141  Sum_probs=15.6

Q ss_pred             CCcEEECcCccccccCCCcccCCCCccEEEccCc
Q 047035          468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN  501 (783)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (783)
                      .|+.||+++|.++......+..+++|+.|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3455555555444433333444444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.00057  Score=64.00  Aligned_cols=86  Identities=15%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             cCCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeCcCC---cccc----c
Q 047035          585 LSSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGN---YLQG----Q  649 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~~----~  649 (783)
                      -+.|++|+|++|.+..    .+...+...+.|+.|+|++|.|.+.    +-+.+..-+.|+.|+|++|   .+..    .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            3455555555555542    2344455567777777777777543    2334455567888888754   3332    2


Q ss_pred             CCcchhCCCCCCEEecCCCcC
Q 047035          650 IPIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       650 ~p~~l~~l~~L~~L~ls~N~l  670 (783)
                      +...+..-+.|+.|+++.|..
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            344566677888888887754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.94  E-value=0.00014  Score=68.20  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             cCCCCCCEEeCCCC-CCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCC--
Q 047035           71 LPFQELQILDLSGN-YFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS----VLPYLNTLTSLTTLNLYYNRIGGLNP--  143 (783)
Q Consensus        71 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p--  143 (783)
                      ..-+.|++|+|+++ .+.......+++++..-+.|++|+|++|.+.+.    +...+..-+.|++|+|++|.|.+...  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44567888888774 554332223335566667777777777777543    23334455677777777777654311  


Q ss_pred             -chhccCCCCCCeEeCCCC
Q 047035          144 -SQGLANLRNLKALNLSWN  161 (783)
Q Consensus       144 -~~~l~~l~~L~~L~L~~n  161 (783)
                       .+++..-+.|++|+|+++
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence             112344445666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.43  E-value=0.0046  Score=53.93  Aligned_cols=57  Identities=23%  Similarity=0.242  Sum_probs=42.5

Q ss_pred             EEECcCCccc-cCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          614 TLDLRDNKFF-GRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       614 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      .++-+++.++ ..+|..+.  ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            6777777775 35665443  468888888888886666678888889999999998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.56  E-value=0.017  Score=50.21  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             CCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035          611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      +|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555555444444555555666666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	783
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-13
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 9e-19
 Identities = 64/385 (16%), Positives = 121/385 (31%), Gaps = 31/385 (8%)

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
           L    +  LG+ N+   +    +DL  +  L      +  ++   +  L +L  +  S+N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 283 NFQGEFPLSLLTNHSNLEV-LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
                 PL  LT   ++ +               N                LK + +   
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRH---- 397
            +     +   S          L   N   ++  L+N +    L +   K   +      
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 398 -----LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRN 452
                L  +NN ++ + P  +   +  L  + ++ N  +     ++  +  L  LDL+ N
Sbjct: 197 TNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 453 KFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL 512
           + S       +     L  L +  N            LT L  L L  N          L
Sbjct: 252 QISNLA---PLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 513 NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE 572
               L  L +  N +S   P  + + + L  L  + N +       + N   +  L    
Sbjct: 307 --KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 573 NRLFGSIASSLNLSSIMHLYLQNNA 597
           N++      + NL+ I  L L + A
Sbjct: 361 NQISDLTPLA-NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 86/400 (21%), Positives = 137/400 (34%), Gaps = 38/400 (9%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
            +     L   N  D+V      L  +TTL      I  +    G+  L NL  +N S N
Sbjct: 22  AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNN 76

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            ++       L NLT L  + ++ N+               +  + N        ++   
Sbjct: 77  QLTD---ITPLKNLTKLVDILMNNNQ---------IADITPLANLTNLTGLTLFNNQITD 124

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
                   +L    L       +S L GL  L              +ANLT+LE L +S 
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
           N       L+ LTN  +L       ++N             L  L L    LK I +   
Sbjct: 185 NKVSDISVLAKLTNLESLI-----ATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-A 238

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
              +   LDL++N++    P   +   TKL  L+L  N  S I  L       L  L   
Sbjct: 239 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAG-----LTALTNL 290

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 461
             N   +   +    ++ L Y+ +  NN     P  +  + +L  L  + NK S     +
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---VS 345

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
           S+    ++ +L    N           NLT++  L L + 
Sbjct: 346 SLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 7e-17
 Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 14/224 (6%)

Query: 76  LQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYY 135
             + +L+       + NK  D S  +K   + +L   N   S +  L  LT+L  L+L  
Sbjct: 169 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 228

Query: 136 NRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTEL 195
           N++  +     LA+L NL  L+L+ N IS+      L  LT L  L L AN+IS     +
Sbjct: 229 NQLKDIGT---LASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISN----I 278

Query: 196 APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255
           +P   L  L       N   +   I  LKNLT L L  NN+    P  +S L  L+ L  
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL 299
           + N +S    S +ANLT++ +L+   N      PL+ LT  + L
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.1 bits (191), Expect = 7e-16
 Identities = 65/400 (16%), Positives = 122/400 (30%), Gaps = 36/400 (9%)

Query: 174 NLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
            L       L    ++ ++++      +  L      +       G+  L NLT+++   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 75

Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
           N L    P  L +L  L  + ++ N ++   P       +   L  +             
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 294 TNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS 353
            N           S+ +   +     T   ++            + L             
Sbjct: 134 LNRLE------LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK- 186

Query: 354 NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNM 413
                     ++   T LE L  +NN  S I   P      L  L ++ N L  +     
Sbjct: 187 -----VSDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLAS 239

Query: 414 GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLD 473
              +  L  +D++ N      P  +  + +L  L L  N+ S       +    +LE   
Sbjct: 240 ---LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL-- 292

Query: 474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC 533
              N           NL  L +L L  N+ +       L    L  L  +NN +S     
Sbjct: 293 ---NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK--LQRLFFANNKVSD--VS 345

Query: 534 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573
            + N + ++ L    N +    P  + N  ++  L L++ 
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 4e-15
 Identities = 69/402 (17%), Positives = 134/402 (33%), Gaps = 37/402 (9%)

Query: 148 ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMR 207
             L       L    ++   ++  L  +T    L      I  S+  +    NL  +   
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTT---LQADRLGIK-SIDGVEYLNNLTQINFS 74

Query: 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
           NN L        I  LKNLT+L          +    + +  +  L    N     L + 
Sbjct: 75  NNQL------TDITPLKNLTKLV--------DILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQ 327
                       + N  +         +  +    L ++S   ++     +         
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 328 LPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL 387
             + N     S L    + + L  ++N++    P  ++ N   L+ L L+ N    I  L
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL 237

Query: 388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL 447
             + +  L  LD++NN ++ + P +    + KL  + +  N      P     +  L  L
Sbjct: 238 ASLTN--LTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNISP-----LAGLTAL 287

Query: 448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI 507
                  +     + +    +L YL +  NN          +LT+L+ L+  NN  +   
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD-- 343

Query: 508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 549
            + L N   +  L   +N +S   P  + N + +  L ++  
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 2e-13
 Identities = 57/354 (16%), Positives = 116/354 (32%), Gaps = 30/354 (8%)

Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
           Q+  LQ     +K I   + +  +   ++ S+N+L    P   ++N TKL  + ++NN  
Sbjct: 45  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI 100

Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM 441
                   +                  +     +     +      +N   +I    G  
Sbjct: 101 ------ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
               L   ++      L+  + +         +  ++           LT L  L   NN
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLER-------LDISSNKVSDISVLAKLTNLESLIATNN 207

Query: 502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 561
             +     G+L +  L  L ++ N L       + + + L  L ++ N +    P  ++ 
Sbjct: 208 QISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261

Query: 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK 621
             +L  L L  N++      +   +       +N        S L     L  L L  N 
Sbjct: 262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN---LTYLTLYFNN 318

Query: 622 FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
                P  +++ ++L+ L    N +      +L  L  +  L   HN+++   P
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 6e-09
 Identities = 66/386 (17%), Positives = 133/386 (34%), Gaps = 31/386 (8%)

Query: 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457
             +   N+T  + Q     + ++  +   +   + +I   +  +  L  ++ S N+ +  
Sbjct: 27  TVLGKTNVTDTVSQTD---LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD- 80

Query: 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL 517
                +    +L  L     N       T +            N+    I      ++  
Sbjct: 81  -----ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG 577
            +   SN +        I   S L  L       +      + N   L+ LD+S N++  
Sbjct: 136 RLELSSNTI------SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 578 SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELR 637
               +  L+++  L   NN +S   P  +  +  L  L L  N+        + + + L 
Sbjct: 190 ISVLA-KLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLT 244

Query: 638 VLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLY 697
            L L  N +    P  L  L KL  L L  N+++   P   +  L   E N +       
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-S 301

Query: 698 IYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGID 757
               L  L  +  Y+N+  D+         L +  R+ F      +  + +NL  ++ + 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVSS----LTKLQRLFFANNKVSDVSSLANLTNINWLS 357

Query: 758 LSYNELTGEIPSEIGELPKVRALNLS 783
             +N+++   P  +  L ++  L L+
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 65  LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT 124
           L  +       L  L    N     N+ +D     + K L  L L +NN +D  +  +++
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSS 327

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           LT L  L    N++  ++    LANL N+  L+   N IS       L NLT +  L L+
Sbjct: 328 LTKLQRLFFANNKVSDVS---SLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLN 381

Query: 185 AN 186
             
Sbjct: 382 DQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 4/280 (1%)

Query: 378 NNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV-IQKLMYIDISKN-NFEGNIP 435
           N ++ G+L     +   + +LD+S  NL    P    +  +  L ++ I    N  G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495
            +I ++ +L  L ++    SG      + +  +L  LD S N   G + P+  +L  L  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555
           +    N  +G I     +   L      +                L  + +S+N LEG+ 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 556 PVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615
            V   + +  Q + L++N L   +       ++  L L+NN + G +P  L +   L +L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC 655
           ++  N   G IP Q  N     V     N      P+  C
Sbjct: 274 NVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 60/233 (25%), Positives = 87/233 (37%), Gaps = 2/233 (0%)

Query: 447 LDLSRNKFSGDLS-ATSVIRCASLEYLDVSEN-NFYGHIFPTYMNLTQLRWLYLKNNHFT 504
           LDLS           +S+     L +L +    N  G I P    LTQL +LY+ + + +
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 564
           G I   L     LV LD S N LSG +P  I +   L  +    N + G IP    +F +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 565 LQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG 624
           L                    +  +     +  +     S LF S +             
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSC 677
               ++     L  L LR N + G +P  L QL+ L  L++S N L G IP  
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 69/303 (22%), Positives = 117/303 (38%), Gaps = 37/303 (12%)

Query: 13  DEILTSWVDDGISDCCD--WERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLF 70
              L+SW+    +DCC+  W  V CD         +LD + +    N    +PI +    
Sbjct: 21  PTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGL----NLPKPYPIPSSLAN 74

Query: 71  LPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTT 130
           LP+  L  L + G             +     +L  L + + N + ++  +L+ + +L T
Sbjct: 75  LPY--LNFLYIGGINNLVGP---IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 131 LNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG 190
           L+  YN + G  P   +++L NL  +    N IS                + +S NR++G
Sbjct: 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 191 SLTELAPFRNLKVL----------------------GMRNNLLNGSVESKGICELKNLTE 228
            +       NL  +                       +     + + +   +   KNL  
Sbjct: 189 KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
           LDL  N + G LP  L+ L  L  L++SFN+L G +P    NL   +  A ++N      
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307

Query: 289 PLS 291
           PL 
Sbjct: 308 PLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 64/284 (22%), Positives = 96/284 (33%), Gaps = 11/284 (3%)

Query: 157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT---ELAPFRNLKVLGMRNNLLNG 213
           N +W G+              +  LDLS   +         LA    L  L +       
Sbjct: 35  NRTWLGVLCDTD----TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 214 SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273
                 I +L  L  L +   N+ G +P  LS +  L  LD S+N LSG LP  I++L +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL 333
           L  +    N   G  P S  +         + +S N                    + N+
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTS--MTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 334 KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHD 393
               + +L   D     +   K    F    +  +  L  L L NN   G L     +  
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 394 LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYS 437
            L  L++S NNL G +PQ  G  +Q+      + N      P  
Sbjct: 269 FLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 6/230 (2%)

Query: 560 NNFRQLQLLDLSENRLFG--SIASSL-NLSSIMHLYLQNNA-LSGQIPSTLFRSTELLTL 615
               ++  LDLS   L     I SSL NL  +  LY+     L G IP  + + T+L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
            +      G IPD ++    L  L    N L G +P ++  L  L  +    N+++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 676 S--CFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRAR 733
                 + LF          +G           +      + L+             +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 734 VQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
                   ++         ++G+DL  N + G +P  + +L  + +LN+S
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 33/278 (11%)

Query: 513 NSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDL 570
            ++ +  LD+S   L     IP  + N  YL+ L +   +                    
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-------------------- 87

Query: 571 SENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630
             N +     +   L+ + +LY+ +  +SG IP  L +   L+TLD   N   G +P  I
Sbjct: 88  --NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN-----KLNGSIPSCFVNMLFWR 685
           ++   L  +   GN + G IP +     KL             K+  +  +  +  +   
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 686 EGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFY 745
               +   S L+   +      +     +     +     +        +          
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 746 NGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
               L+    +++S+N L GEIP + G L +      +
Sbjct: 266 QLKFLHS---LNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 50/268 (18%), Positives = 84/268 (31%), Gaps = 4/268 (1%)

Query: 123 NTLTSLTTLNLYYNRIGGLNP-SQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181
                +  L+L    +    P    LANL  L  L +       G     +  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 182 DLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP 241
            ++   +SG++ +        V    +           I  L NL  +    N + G +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 242 WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301
                   L        +             +L ++ LS N  +G+  +   ++ +  ++
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP 361
            L K S    L             L+  N     +P  L        L++S N L G  P
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLR-NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 362 TWLMQNNTKLEVLRLSNNSFSGILQLPK 389
                N  + +V   +NN       LP 
Sbjct: 286 QG--GNLQRFDVSAYANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 12/260 (4%)

Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
            +   LDL  N +         +L  L  L +  N +S   P   A L  LE L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ 343
            + E P  +      L V   +++   +           +++   P  +  +        
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN 403
               ++ ++   +    P  L  +   L  L L  N  + +        + L  L +S N
Sbjct: 150 KKLSYIRIADTNI-TTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 404 NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-----DL 458
           +++ +           L  + ++ N     +P  + + K + ++ L  N  S        
Sbjct: 206 SISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 459 SATSVIRCASLEYLDVSENN 478
                 + AS   + +  N 
Sbjct: 264 PPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 12/259 (4%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
               +L L NN  + I          L  L + NN ++ + P      + KL  + +SKN
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKN 89

Query: 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM 488
             +         ++EL + +    K     S  + +    +  L  +     G     + 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
            + +L ++ + + + T  I  GL  S  L  L +  N ++      +   + L  L +S 
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSG------QI 602
           N +       + N   L+ L L+ N+L        +   I  +YL NN +S         
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 603 PSTLFRSTELLTLDLRDNK 621
           P    +      + L  N 
Sbjct: 265 PGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 44/198 (22%), Positives = 69/198 (34%), Gaps = 3/198 (1%)

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
                L L+NN  T        N   L  L + NN +S   P        L+ L +SKN 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRST 610
           L+          ++L++ +    ++  S+ + LN   ++ L       SG          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
           +L  + + D      IP        L  L L GN +      +L  L  L  L LS N +
Sbjct: 151 KLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 671 NGSIPSCFVNMLFWREGN 688
           +        N    RE +
Sbjct: 208 SAVDNGSLANTPHLRELH 225

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 44/259 (16%), Positives = 81/259 (31%), Gaps = 12/259 (4%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
              LD+ NN +T  +       ++ L  + +  N      P +   + +L  L LS+N+ 
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
             +L          L   +         +F   +N   +  L       +G         
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574
             L  + I++  ++  IP   G    L  L +  N +       +     L  L LS N 
Sbjct: 150 KKLSYIRIADTNIT-TIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 575 LFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG------RIPD 628
           +      SL  +  +     NN    ++P  L     +  + L +N            P 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 629 QINNHSELRVLLLRGNYLQ 647
                +    + L  N +Q
Sbjct: 267 YNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 3/215 (1%)

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
                LD+  N         + NL  L  L L NN  +            L  L +S N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLS 586
           L             L V       +  ++   +N    ++L             +   + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYL 646
            + ++ + +  ++  IP  L  S  L  L L  NK        +   + L  L L  N +
Sbjct: 151 KLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 647 QGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
                 +L     L  L L++NKL         + 
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 242

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 19/268 (7%)

Query: 98  SGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALN 157
                   +L+L  N   +        L +L TL L  N+I  ++P    A L  L+ L 
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLY 85

Query: 158 LSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVL--GMRNNLLNGSV 215
           LS N +      L       L+ L +  N I+     +    N  ++     N L +  +
Sbjct: 86  LSKNQLKE----LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 216 ESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLE 275
           E+     +K L+ + + + N+             L  L +  N ++    + +  L +L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 276 YLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKV 335
            L LS N+       SL       E+ L   ++ L            ++V+ L N N+  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLN--NNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 336 IPS-------FLLHQYDFKFLDLSSNKL 356
           I S       +   +  +  + L SN +
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 6e-08
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 3/183 (1%)

Query: 601 QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKL 660
           ++P  L   T    LDL++NK          N   L  L+L  N +    P A   L KL
Sbjct: 24  KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 661 GILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWL 720
             L LS N+L   +P      L     + +         F       +     + L    
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 721 FGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRAL 780
             +      ++     +               ++ + L  N++T    + +  L  +  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 781 NLS 783
            LS
Sbjct: 201 GLS 203

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 2e-14
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 4/256 (1%)

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
              + + L  N  S +          L  L + +N L  +       +            
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM 488
                 P +   +  L  L L       +L        A+L+YL + +N        T+ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
           +L  L  L+L  N  +   +      H L  L +  N ++   P    +   L  L +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFR 608
           N+L       +   R LQ L L++N       +    + +      ++ +   +P  L  
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL-- 268

Query: 609 STELLTLDLRDNKFFG 624
                   L  N   G
Sbjct: 269 -AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 4e-13
 Identities = 53/259 (20%), Positives = 86/259 (33%), Gaps = 9/259 (3%)

Query: 176 TNLEVLDLSANRISGSLTE-LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN 234
              + + L  NRIS          RNL +L + +N+L     +                 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLT 294
            L    P     L  L  L +    L    P +   L +L+YL L DN  Q         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFR 150

Query: 295 NHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLP-NCNLKVIPSFLLHQYDFKFLDLSS 353
           +  NL  L L  +    +    +     L  L L  N    V P           L L +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 354 NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNM 413
           N  +   PT  +     L+ LRL++N +    +   +    L+    S++ +   LPQ +
Sbjct: 211 NN-LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-AWLQKFRGSSSEVPCSLPQRL 268

Query: 414 GIVIQKLMYIDISKNNFEG 432
                      ++ N+ +G
Sbjct: 269 ----AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 48/255 (18%), Positives = 74/255 (29%), Gaps = 11/255 (4%)

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
              + +  N +S            L +L +  N L             L+ LDLS+N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 577 GSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634
            S+  +    L  +  L+L    L    P        L  L L+DN       D   +  
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGS 694
            L  L L GN +      A   L  L  L L  N++    P  F ++             
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 695 GLYIYFQLGGLHSIGTYYNSTLDL----WLFGDDYITLPQRARVQFVTKNRYEFYNGSNL 750
                  L  L ++       L L    W+       L    +    + +         L
Sbjct: 214 SALPTEALAPLRAL-----QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 751 NYMSGIDLSYNELTG 765
                  L+ N+L G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 51/222 (22%), Positives = 75/222 (33%), Gaps = 7/222 (3%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
               Q + L GN            S  + + L IL L+ N            L  L  L+
Sbjct: 31  PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL 192
           L  N             L  L  L+L                L  L+ L L  N +    
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 193 TE-LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK 251
            +      NL  L +  N ++  V  +    L +L  L L +N +    P    DL  L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 252 VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
            L +  N+LS      +A L +L+YL L+DN +  +     L
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (172), Expect = 2e-13
 Identities = 54/449 (12%), Positives = 110/449 (24%), Gaps = 14/449 (3%)

Query: 225 NLTELDLGENNL-EGQLPWCLSDLIGLKVLDISFNHLSG----NLPSVIANLTSLEYLAL 279
           ++  LD+    L + +    L  L   +V+ +    L+     ++ S +    +L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
             N         +L         + K+S      T          +  LP      +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 340 LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD 399
           LL     + L               ++  +          S        K        ++
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
            +   +     ++    ++ L        +        I   K         +   GD+ 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 460 ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVV 519
              +          +     +             R L  K +     +    L   G  +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
           L  +       +               S           +   +                
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 580 ASSLNLSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGRIPDQI----- 630
                 S +  L+L +  +S      + +TL  +  L  LDL +N        Q+     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQK 659
                L  L+L   Y   ++   L  L+K
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (150), Expect = 8e-11
 Identities = 57/463 (12%), Positives = 122/463 (26%), Gaps = 29/463 (6%)

Query: 200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ----LPWCLSDLIGLKVLDI 255
           +++ L ++   L+ +  ++ +  L+    + L +  L       +   L     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 256 SFNHLSGNLPSVIA-----NLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310
             N L       +          ++ L+L +    G     L +    L  L     S+ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTK 370
            L         +  +          +    L     + L              +  N+  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 371 LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
              +R+            +          ++++N   +          + + +  +K   
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKL--ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNL 490
            G      G +     L        G  +      C  L   +  +              
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
             L    L+       +     +         S+ L        +   +      +    
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN----RLEDAG 356

Query: 551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-----NLSSIMHLYLQNNALSGQIPST 605
           +             L++L L++  +  S  SSL        S+  L L NN L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 606 LFRS-----TELLTLDLRDNKFFGRIPDQIN----NHSELRVL 639
           L  S       L  L L D  +   + D++     +   LRV+
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 127 SLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISS-GATRLG--LGNLTNLEVLDL 183
            + +L++    +     ++ L  L+  + + L   G++      +   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 184 SANRISGS 191
            +N +   
Sbjct: 63  RSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 55/448 (12%), Positives = 108/448 (24%), Gaps = 24/448 (5%)

Query: 248 IGLKVLDISFNHLSGN-LPSVIANLTSLEYLALSDNNFQGEFPLSL---LTNHSNLEVLL 303
           + ++ LDI    LS      ++  L   + + L D          +   L  +  L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 304 LKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVI------PSFLLHQYDFKFLDLSSNKLV 357
           L    +  L         Q   LQ P+C ++ +       +          L        
Sbjct: 62  L---RSNELGDVGVHCVLQG--LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 116

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVI 417
            +    L+ +     +     +    + +L      L         ++    P    + +
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
                 +         +  S  +++ L L        +       V   ASL  L +  N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 478 NFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537
                               L+                   VL    +L    +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNA 597
                +L  +       +               S      +    L    I +  L++  
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 598 LSGQIPSTLFRSTELLTLDLRDNKF----FGRIPDQINNHSELRVLLLRGNYLQGQIPIA 653
           +           + L  L L D          +   +  +  LR L L  N L     + 
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 654 LCQLQK-----LGILDLSHNKLNGSIPS 676
           L +  +     L  L L     +  +  
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 101 SKKLKILNLNYNNFNDSVLPYL-NTLTSLTTLNLYYNRIGGLNP---SQGLANLRNLKAL 156
           S  ++ L++     +D+    L   L     + L    +        S  L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 157 NLSWNGIS-SGATRLGLG---NLTNLEVLDLS 184
           NL  N +   G   +  G       ++ L L 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 121 YLNTLTSLTTLNLYYNRIGGLNPS---QGLANLRNLKALNLSWNGIS-SGATRLGLG--- 173
                + L  L L    +   + S     L    +L+ L+LS N +  +G  +L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 174 NLTNLEVLDLSANRISGSLTEL 195
               LE L L     S  + + 
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 5/145 (3%)

Query: 17  TSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQEL 76
                  +  C          ++       L   ++ +      G   L   L  P   L
Sbjct: 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 371

Query: 77  QILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYL-----NTLTSLTTL 131
           ++L L+       + +    +  ++  L+ L+L+ N   D+ +  L          L  L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 132 NLYYNRIGGLNPSQGLANLRNLKAL 156
            LY          +  A  ++  +L
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 75  ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFND----SVLPYLNTLTSLTT 130
           ++Q LD+        ++ +  +     ++ +++ L+     +     +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 131 LNLYYNRIGGLNP---SQGLA-NLRNLKALNLSWNG 162
           LNL  N +G +      QGL      ++ L+L    
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 149 NLRNLKALNLSWNGISS-GATRLG--LGNLTNLEVLDLSANRISGS-LTELA-----PFR 199
               L+ L L+   +S    + L   L    +L  LDLS N +  + + +L      P  
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 200 NLKVLGMRNNLLNGSVESKGICELKNLTELD 230
            L+ L + +   +  +E +     K+   L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 29/190 (15%), Positives = 50/190 (26%), Gaps = 13/190 (6%)

Query: 582 SLNLSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKF----FGRIPDQINNHSEL 636
           SL++ S   L +Q   LS    + L     +   + L D          I   +  +  L
Sbjct: 1   SLDIQS---LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 637 RVLLLRGNYLQGQIPIALCQL-----QKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDL 691
             L LR N L       + Q       K+  L L +  L G+      + L       +L
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117

Query: 692 YGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLN 751
           + S   +      L   G          L  +                     +    ++
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 752 YMSGIDLSYN 761
                +    
Sbjct: 178 NNDINEAGVR 187

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 8/204 (3%)

Query: 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
              ++    NLT  LP ++      L    +S+N        ++     L  L+L R + 
Sbjct: 12  HLEVNCDKRNLTA-LPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
           +       V     +       +N    +      L  L  L +  N  T      L   
Sbjct: 68  TKL----QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574
             L  L +  N L    P  +     L+ L ++ N+L       +N    L  L L EN 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 575 LFGSIASSLNLSSIMHLYLQNNAL 598
           L+           +   +L  N  
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 39/211 (18%), Positives = 68/211 (32%), Gaps = 9/211 (4%)

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
           + ++ +  E++  + NL   LP  L       +L +S N L     + +   T L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
                        L     L+       + L+           L VL +    L  +P  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLD----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 340 LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD 399
            L               +   P  L+    KLE L L+NN+ + +        + L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
           +  N+L  +     G     L +  +  N +
Sbjct: 179 LQENSLYTIPKGFFG--SHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 36/196 (18%), Positives = 53/196 (27%), Gaps = 9/196 (4%)

Query: 330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK 389
             NL  +P  L    D   L LS N L       L    T+L  L L     +       
Sbjct: 19  KRNLTALPPDLPK--DTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELT-----KL 70

Query: 390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449
                L  L   + +   +    +       + +     N   ++P              
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA 509
            +      L    +     LE L ++ NN           L  L  L L+ N     I  
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 510 GLLNSHGLVVLDISNN 525
           G   SH L    +  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 39/181 (21%), Positives = 56/181 (30%), Gaps = 3/181 (1%)

Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 526
                L +SEN  Y     T M  T+L  L L     T     G L   G + L  +   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 527 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLS 586
               +   +   + LDV       L       +   ++L L       L   + +     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYL 646
             + L   NN L+      L     L TL L++N  +  IP        L    L GN  
Sbjct: 151 EKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 647 Q 647
            
Sbjct: 208 L 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 38/181 (20%), Positives = 54/181 (29%), Gaps = 3/181 (1%)

Query: 491 TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
                L+L  N       A L+    L  L++             G    L  L +S N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRST 610
           L+    +         L           + +   L  +  LYL+ N L    P  L  + 
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670
           +L  L L +N         +N    L  LLL+ N L   IP        L    L  N  
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 671 N 671
            
Sbjct: 208 L 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 3/176 (1%)

Query: 608 RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSH 667
           +    L ++         +P  +       +L L  N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 668 NKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYIT 727
            +L        + +L   + + +   S   +   L  L  +   +N    L L     + 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 728 LPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             Q   ++            +    +  + L+ N LT      +  L  +  L L 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 36/188 (19%), Positives = 54/188 (28%), Gaps = 6/188 (3%)

Query: 98  SGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALN 157
               K   IL+L+ N      L  L   T LT LNL    +  L     L  L  L   +
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 158 LSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVES 217
                +      L    + ++    L++  +                     L  G +  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 218 KGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYL 277
               E  +L       NNL       L+ L  L  L +  N L   +P        L + 
Sbjct: 147 TPKLEKLSL-----ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 278 ALSDNNFQ 285
            L  N + 
Sbjct: 201 FLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 41/165 (24%), Positives = 58/165 (35%), Gaps = 3/165 (1%)

Query: 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576
             +L +S NLL       +  ++ L  L +     E            L  LDLS N+L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLD--RAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 577 GSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSEL 636
                   L ++  L +  N L+      L    EL  L L+ N+     P  +    +L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 637 RVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681
             L L  N L       L  L+ L  L L  N L  +IP  F   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 48/233 (20%), Positives = 71/233 (30%), Gaps = 15/233 (6%)

Query: 149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMR 207
            + +   +N     +++    L      +  +L LS N +   SL  L P+  L  L + 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
              L    + +    L  L  LDL  N L+       +      +        S  LP  
Sbjct: 64  RAELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLG 118

Query: 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQ 327
                          N     P  LLT    LE L L  ++   L          L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 328 LPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGN-----FPTWLMQNNTKLEVLR 375
           L   +L  IP      +   F  L  N  + N     F  WL  N   + V +
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 38/228 (16%), Positives = 59/228 (25%), Gaps = 31/228 (13%)

Query: 558 QINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDL 617
           +++       ++  +  L  ++   L       L+L  N L     +TL   T L  L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 618 RDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSC 677
              +      D                            L  LG LDLSHN+L       
Sbjct: 63  DRAELTKLQVD--------------------------GTLPVLGTLDLSHNQLQSLPLLG 96

Query: 678 FVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFV 737
                           + L +    G       Y        L        P+  ++   
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 738 TKNRYEFYNGS--NLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
             N  E   G    L  +  + L  N L   IP        +    L 
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 40/267 (14%), Positives = 89/267 (33%), Gaps = 14/267 (5%)

Query: 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGM 408
           LDL+   L  +    L+     +   R   +     L         ++H+D+SN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVS 61

Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA-------T 461
               +     KL  + +        I  ++ +   L  L+LS      + +        +
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 462 SVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLD 521
            +         D +E +    +      +TQL     + N     +   +     LV LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 522 IS-NNLLSGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLQLLDLSENRLFGSI 579
           +S + +L           +YL  L +S+   +     +++     L+ L +      G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 580 ASSLNLSSIMHLYLQNNALSGQIPSTL 606
                  ++ HL +  +  +     T+
Sbjct: 242 QLL--KEALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 36/270 (13%), Positives = 73/270 (27%), Gaps = 18/270 (6%)

Query: 394 LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 453
           L + LD++  NL   +     ++ Q ++     ++  +  +       + +  +DLS + 
Sbjct: 1   LWQTLDLTGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSV 57

Query: 454 FSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLN 513
                    + +C+ L+ L +        I  T    + L  L L               
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG---------- 107

Query: 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573
                       LLS        N S+          +      +      L     +  
Sbjct: 108 ----FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 574 RLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD-NKFFGRIPDQINN 632
           +   S       + +      +  L        F+   L  L L            ++  
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 633 HSELRVLLLRGNYLQGQIPIALCQLQKLGI 662
              L+ L + G    G + +    L  L I
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 35/269 (13%), Positives = 86/269 (31%), Gaps = 11/269 (4%)

Query: 307 SSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQ 366
             NL       + +  +   + P   +    +     +  + +DLS++ +  +    ++ 
Sbjct: 9   GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 68

Query: 367 NNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDI-SNNNLTGMLPQNMGIVIQKLMYIDI 425
             +KL+ L L     S  +     K+  L  L++   +  +    Q +     +L  +++
Sbjct: 69  QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128

Query: 426 ------SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF 479
                 ++ + +  + +    + +L L    +N    DLS         +          
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188

Query: 480 YGHIFPTYMNLTQLRWLYLKN-NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 538
               F  +  L  L+ L L        +    L     L  L +   +  G +       
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 248

Query: 539 SYLDVLLMSKNHLEGNIPVQINNFRQLQL 567
            +L +   + +H        I N +  ++
Sbjct: 249 PHLQI---NCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 19/234 (8%)

Query: 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR 625
           Q LDL+   L   +   L    ++      + +   +    F    +  +DL ++     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61

Query: 626 -IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFW 684
            +   ++  S+L+ L L G  L   I   L +   L  + L+ +  +G        +L  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL--VRLNLSGCSGFSEFALQTLLSS 119

Query: 685 REGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEF 744
                +L  S  + + +     ++     +   L L G                      
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 745 YNGSNLNYMSG--------------IDLSY-NELTGEIPSEIGELPKVRALNLS 783
            + S+   +                + LS   ++  E   E+GE+P ++ L + 
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 17/253 (6%)

Query: 74  QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLP-YLNTLTSLTTLN 132
           Q +       ++ D            S  +++ ++L+ +    S L   L+  + L  L+
Sbjct: 23  QGVIAFRCPRSFMDQPL-----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWN-GISSGATRLGLGNLTNLEVLDLSANRISGS 191
           L   R+     +  LA   NL  LNLS   G S  A +  L + + L+ L+LS       
Sbjct: 78  LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136

Query: 192 LTELAPF-------RNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244
                           L + G R NL    + +        +         L+       
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196

Query: 245 SDLIGLKVLDISF-NHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLL 303
             L  L+ L +S    +       +  + +L+ L +      G   L L     +L++  
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL-LKEALPHLQINC 255

Query: 304 LKVSSNLRLKTEN 316
              ++  R    N
Sbjct: 256 SHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 107 LNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSG 166
           L+L   N +  V   L    S   +     R     P     +   ++ ++LS + I   
Sbjct: 5   LDLTGKNLHPDVTGRL---LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 167 ATRLGLGNLTNLEVLDLSANRISGS-LTELAPFRNLKVLGMRNN 209
                L   + L+ L L   R+S   +  LA   NL  L +   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 62/347 (17%), Positives = 102/347 (29%), Gaps = 30/347 (8%)

Query: 221 CELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALS 280
           C  +   EL+L    L   LP        L+ L  S N L+  LP +  +L SL     +
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 281 DNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFL 340
                   PL      SN ++  L    N        +    LK L     +L+ I +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 341 LHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDI 400
               +                   +QN   L  +   NNS   +  LP     ++   +I
Sbjct: 150 NQLEEL----------------PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 193

Query: 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
                       +  +      +    +        ++ +     L +L ++    D+S 
Sbjct: 194 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 253

Query: 461 TSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520
                 + L       N     I         L  L + NN    ++ A       L  L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERL 309

Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQL 567
             S N L+  +P    N   L V     N L    P    +   L++
Sbjct: 310 IASFNHLA-EVPELPQNLKQLHV---EYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 8e-06
 Identities = 54/349 (15%), Positives = 95/349 (27%), Gaps = 36/349 (10%)

Query: 249 GLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
               L+++   LS +LP +  +L SL     S N+        L     +L+ LL+    
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-----ELPELPQSLKSLLV---- 85

Query: 309 NLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNN 368
                 +       L      + N       L +    K +D+ +N L            
Sbjct: 86  -DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
                 +L        L      +     L    +    +     G  I + +    +  
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM 488
                   +        L          D   T +               F       + 
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL-------PQSLTFLDVSENIFS 257

Query: 489 NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548
            L++L       N  + +I++       L  L++SNN L   +P        L     S 
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASF 313

Query: 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN--LSSIMHLYLQN 595
           NHL   +P    N   L+ L +  N L             S+  L + +
Sbjct: 314 NHLA-EVPELPQN---LKQLHVEYNPL-----REFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 56/329 (17%), Positives = 98/329 (29%), Gaps = 28/329 (8%)

Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
           Q   L+L N  L  +P    H    + L  S N L     T L +    L+ L + NN+ 
Sbjct: 39  QAHELELNNLGLSSLPELPPH---LESLVASCNSL-----TELPELPQSLKSLLVDNNNL 90

Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM 441
             +  LP +   L    +             + I+      +    +        + G  
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF----PTYMNLTQLRWLY 497
           +   L +L    F   + A +       +     E+   G+      P   NL  L  +Y
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM--------SKN 549
             NN                V  +   +L          + S      +          N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 550 HLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS 609
                I    +    L+ L++S N+L   + +      +  L    N L+ ++P      
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKL-IELPAL--PPRLERLIASFNHLA-EVPELP--- 323

Query: 610 TELLTLDLRDNKFFGRIPDQINNHSELRV 638
             L  L +  N      PD   +  +LR+
Sbjct: 324 QNLKQLHVEYNP-LREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 48/323 (14%), Positives = 90/323 (27%), Gaps = 22/323 (6%)

Query: 368 NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK 427
           + +   L L+N   S + +LP      L  L  S N+LT +      +    +   ++  
Sbjct: 37  DRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 428 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTY 487
            +    +   +G               S                       F        
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547
             L +L+ L      +        L    L +  I            + N  +L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 548 KNHLEGNIPVQINNFRQLQLLDLSENRL---------FGSIASSLNLSSIMHLYLQNNAL 598
            N L+    +  +        +   +             S      LS +       NA 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 599 SGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ 658
           S +I S       L  L++ +NK    +P        L  L+   N+L  ++P     L+
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLA-EVPELPQNLK 327

Query: 659 KLGILDLSHNKLNGSIPSCFVNM 681
           +L    + +N L    P    ++
Sbjct: 328 QL---HVEYNPLR-EFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 108 NLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGA 167
               N  ++ +    +   SL  LN+  N++  L           L+ L  S+N ++   
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLAEVP 320

Query: 168 TRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKV 203
                    NL+ L +  N +           +L++
Sbjct: 321 -----ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
                +L EL++  N L  +LP        L+ L  SFNHL+     V     +L+ L +
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA----EVPELPQNLKQLHV 331

Query: 280 SDNNFQG--EFPLSL 292
             N  +   + P S+
Sbjct: 332 EYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 84  NYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNP 143
            Y+   + N+          L+ LN++ N      LP       L  L   +N +  +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKL--IELP--ALPPRLERLIASFNHLAEVPE 321

Query: 144 SQGLANLRNLKALNLSWNGISS 165
                  +NLK L++ +N +  
Sbjct: 322 L-----PQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 67/345 (19%), Positives = 109/345 (31%), Gaps = 31/345 (8%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
           ++   L LN      S LP L     L +L    N +  L         ++LK+L +  N
Sbjct: 38  RQAHELELNNLGL--SSLPEL--PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNN 88

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            + +      L +L  L      +N     L EL     LK++ + NN L    +     
Sbjct: 89  NLKA------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
           E        L E      LP+           D +      +LP  + ++ +   +    
Sbjct: 143 EFIAAGNNQLEELPELQNLPFL-----TAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197

Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
              Q    L+ +   +NL   L  +  +L            L  L      L V  +   
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
              +        N    N    L      LE L +SNN    +  LP      L  L  S
Sbjct: 258 GLSELPPNLYYLNAS-SNEIRSLCDLPPSLEELNVSNNKLIELPALPP----RLERLIAS 312

Query: 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFL 446
            N+L   +P+      Q L  + +  N      P     +++L +
Sbjct: 313 FNHLAE-VPEL----PQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.6 bits (124), Expect = 8e-08
 Identities = 47/330 (14%), Positives = 81/330 (24%), Gaps = 12/330 (3%)

Query: 323 LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL---MQNNTKLEVLRLSNN 379
           LK+  +   + K + + LL     K + LS N +      WL   + +   LE+   S+ 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 380 SFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIG 439
               +         LL    +    L  +   +          +    +         + 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLK 499
                        +   +L+     + A      +   N   +        T      L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 500 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI 559
                          H L+        L                 L        N+    
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 560 NNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS-----TELLT 614
            N   L               S L    +  L LQ N +      TL         +LL 
Sbjct: 250 LNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 615 LDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
           L+L  N+ F    D ++   E+     RG 
Sbjct: 307 LELNGNR-FSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 43/333 (12%), Positives = 96/333 (28%), Gaps = 22/333 (6%)

Query: 127 SLTTLNLYYNRIGGLNPS---QGLANLRNLKALNLSWNGISSGATRL---GLGNLTNLEV 180
           S+   +L  + I   +       L    ++K + LS N I + A R     + +  +LE+
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 181 LDLSANRISGSLTELAP-FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ 239
            + S         E+    R L    ++   L+    S           L    +     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 240 LPWCL--SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
               L  + L       I+       +     N   L  +    N  +            
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLV 357
           +  +L         ++ E         +       +  +            L ++     
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGILQ-LPKVKHDLLRHLDISNNNLTG----MLPQN 412
                 L           LS    + ++    K+++  L+ L +  N +       L   
Sbjct: 244 NLRELGLNDCL-------LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 413 MGIVIQKLMYIDISKNNFEGNIPYSIGEMKELF 445
           +   +  L++++++ N F       + E++E+F
Sbjct: 297 IDEKMPDLLFLELNGNRF-SEEDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 47/338 (13%), Positives = 87/338 (25%), Gaps = 22/338 (6%)

Query: 249 GLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSL---LTNHSNLEVLLLK 305
            LK+  I+      ++ +V+    S++ + LS N    E    L   + +  +LE+    
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 306 VSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWL- 364
                R+K E       L    L    L  +              L            L 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 365 --MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMY 422
                       +++       +         LR +    N L     +      Q    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH 482
           +   K    G  P  I  +    L      K       T     +S   + +        
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 483 IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI-----GN 537
           +      L+      + +           L + GL  L +  N +       +       
Sbjct: 248 LGLNDCLLSARGAAAVVDAF-------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 538 FSYLDVLLMSKNHL--EGNIPVQINN-FRQLQLLDLSE 572
              L  L ++ N    E ++  +I   F      +L E
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 338

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNG 213
           + L+L+   ++       L  L  +  LDLS NR+            L+ L +     N 
Sbjct: 1   RVLHLAHKDLTVLC---HLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNA 54

Query: 214 SVESKGICELKNLTELDLGENNLEG-QLPWCLSDLIGLKVLDISFNHLS---GNLPSVIA 269
                G+  L  L EL L  N L+       L     L +L++  N L    G    +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 270 NLTSLEYL 277
            L S+  +
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 26/108 (24%)

Query: 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL----------- 153
           ++L+L + +   +VL +L  L  +T L+L +NR+  L P+  LA LR L           
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE 56

Query: 154 -----------KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG 190
                      + L L  N +   A    L +   L +L+L  N +  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRIS 189
            L+L +  +  L     L  L  +  L+LS N + +      L  L  LEVL  +++   
Sbjct: 2   VLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQ-ASDNAL 55

Query: 190 GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG 238
            ++  +A    L+ L + NN L  S   + +     L  L+L  N+L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 373 VLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG 432
           VL L++   + +  L ++    + HLD+S+N L  + P    +   +++    +      
Sbjct: 2   VLHLAHKDLTVLCHLEQLLL--VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-- 57

Query: 433 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF 479
                +  +  L  L L  N+     +   ++ C  L  L++  N+ 
Sbjct: 58  --VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 29/148 (19%)

Query: 251 KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310
           +VL ++   L+      +  L  + +L LS N  +   P                +++  
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA---------------LAALR 43

Query: 311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTK 370
            L+                + N       + +    + L L +N+L  +     + +  +
Sbjct: 44  CLEVLQA------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 91

Query: 371 LEVLRLSNNSFSGILQLPKVKHDLLRHL 398
           L +L L  NS      + +   ++L  +
Sbjct: 92  LVLLNLQGNSLCQEEGIQERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR 625
           ++L L+   L   +     L  + HL L +N L    P+    +   L +    +     
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALEN 57

Query: 626 IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672
           +    N      +LL      Q      L    +L +L+L  N L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 73  FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLN 132
              +  LDLS N                +    +  L  ++     +  +  L  L  L 
Sbjct: 19  LLLVTHLDLSHNRLRALPP-------ALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 133 LYYNRIGGLNPSQGLANLRNLKALNLSWNGISS 165
           L  NR+      Q L +   L  LNL  N +  
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 48/216 (22%), Positives = 75/216 (34%), Gaps = 23/216 (10%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
                +    +N  D+V      L  +TTL+ +   +  +   +G+  L NL  L L  N
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDN 73

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN------------LKVLGMRNN 209
            I+  A    L  +T LE+       +S      +                L  L     
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 210 LLNGSVESKGICELKNLTELDLGENNLEGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVI 268
           L     +   I  L  LT L               L++L  L  L    N +S   P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 269 ANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304
           A+L +L  + L +N      PL+   N SNL ++ L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 110 NYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATR 169
           +  N   S L  L  L+ LTTL    N+I  ++P   LA+L NL  ++L  N IS  +  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-- 211

Query: 170 LGLGNLTNLEVLDLS 184
             L N +NL ++ L+
Sbjct: 212 -PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 84  NYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNP 143
               G  +  D     +  KL  L  + N  +D  +  L +L +L  ++L  N+I  ++P
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP 212

Query: 144 SQGLANLRNLKALNLS 159
              LAN  NL  + L+
Sbjct: 213 ---LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 18/227 (7%)

Query: 441 MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN 500
           +     +   ++  +  ++         +  L                 L  L  L LK+
Sbjct: 18  LANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 501 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 560
           N  T       L              L           +   +  +    L       + 
Sbjct: 73  NQITDLAPLKNLTKI---------TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 561 NFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
               L  L +    L      S         YL          + L   ++L TL   DN
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSH 667
           K     P  + +   L  + L+ N +    P+A      L I+ L++
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 148 ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMR 207
             L N   +    + ++   T     +L  +  L      ++ ++  +    NL  L ++
Sbjct: 16  PALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
           +N +      K + ++  L        N+           + L    I+       L ++
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQ 327
                 L  +              L   ++                        +L  L+
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQ------------VSDLTPLANLSKLTTLK 179

Query: 328 LPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN 378
             +  +  I        +   + L +N++    P   + N + L ++ L+N
Sbjct: 180 ADDNKISDISPL-ASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 25/216 (11%), Positives = 64/216 (29%), Gaps = 22/216 (10%)

Query: 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSEN 477
              + I   K+N    +  +  ++  +  L       +   +   V    +L  L++ +N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDN 73

Query: 478 NFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537
                     +       L          I          +      ++        +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 538 FSYLDVLLMSKNHLEGNI--------------PVQINNFRQLQLLDLSENRLFGSIASSL 583
                  + + + L G                   + N  +L  L   +N++      + 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA- 192

Query: 584 NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619
           +L +++ ++L+NN +S   P  L  ++ L  + L +
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 24/194 (12%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
            +    NL   +  D+V    N L S+  +    + I  +   QG+  L N+  L L+ N
Sbjct: 24  AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGN 78

Query: 162 GISSGATRLGL---------------GNLTNLEVLDLSANRISGSLTELAPFRNLKVLGM 206
            ++       L                +         S +     ++++    +L  L  
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPS 266
                N   +   +  L  L  L L +N +   +P  L+ L  L+ L +S NH+S     
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR 194

Query: 267 VIANLTSLEYLALS 280
            +A L +L+ L L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 25/195 (12%)

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
                  NL    +           L ++  +  + + I S     G+  L N+  L L+
Sbjct: 23  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLN 76

Query: 185 ANRISG---------------SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229
            N+++                   ++    +LK L    +L         I  L +L +L
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
           +             +   +         ++   ++   +A LT L+ L LS N+      
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--- 192

Query: 290 LSLLTNHSNLEVLLL 304
           L  L    NL+VL L
Sbjct: 193 LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 18/205 (8%)

Query: 198 FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISF 257
           F       ++   +  +V      EL ++ ++    ++++      +  L  +  L ++ 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 258 NHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENW 317
           N L+   P  +ANL +L +L L +N  +    L  L    +L +       +  +   N 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL------EHNGISDING 129

Query: 318 IPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS 377
           +             N     + L        L L  N++    P   +   TKL+ L LS
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS 186

Query: 378 NNSFSGILQLPKVKHDLLRHLDISN 402
            N  S +  L  +K+  L  L++ +
Sbjct: 187 KNHISDLRALAGLKN--LDVLELFS 209

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 517 LVVLDISNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
              L +++N L       + G   +L  L + +N L G  P        +Q L L EN++
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 576 FGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634
                     L  +  L L +N +S  +P +      L +L+   +  F           
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAE 149

Query: 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676
            LR   L G   +   P    +++ + I DL H++   S  +
Sbjct: 150 WLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 23/180 (12%), Positives = 63/180 (35%), Gaps = 8/180 (4%)

Query: 396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 455
             +D +   L   +P+++ +   +L    ++ N         +       +    +    
Sbjct: 11  TTVDCTGRGLKE-IPRDIPLHTTEL---LLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 456 GDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH 515
             +   +    + ++ L + EN         ++ L QL+ L L +N  +  +     + +
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575
            L  L++++N  + +         +L    ++        P   +  R +Q+ DL  +  
Sbjct: 127 SLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 15/186 (8%)

Query: 223 LKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282
           L    +  LG+ N+   +    +DL  +  L      +  ++   +  L +L  +  S+N
Sbjct: 17  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 72

Query: 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
                 PL  LT   +       + +N ++     +             N       L +
Sbjct: 73  QLTDITPLKNLTKLVD------ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISN 402
             +   L+LSSN +        + +  +L            +  L       L  LDIS+
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT-----LERLDISS 181

Query: 403 NNLTGM 408
           N ++ +
Sbjct: 182 NKVSDI 187

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 23/192 (11%)

Query: 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184
           L       L    +          +L  +  L     GI S     G+  L NL  ++ S
Sbjct: 17  LAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINFS 70

Query: 185 ANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244
            N+++         + + +L   N + + +  +            +   +    +    L
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 245 SDLIGLKVLDISFNHLSGNL--------------PSVIANLTSLEYLALSDNNFQGEFPL 290
           + L          + LSG                   +ANLT+LE L +S N       +
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD---I 187

Query: 291 SLLTNHSNLEVL 302
           S+L   +NLE L
Sbjct: 188 SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 20/189 (10%)

Query: 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161
            +     L   N  D+V      L  +TTL      I  +    G+  L NL  +N S N
Sbjct: 18  AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNN 72

Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
            ++       L  L ++ + +     I+                   ++      +    
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 222 ELKNLTELDLGENNLEGQLPWC-------------LSDLIGLKVLDISFNHLSGNLPSVI 268
              +   +                           L++L  L+ LDIS N +S    SV+
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVL 190

Query: 269 ANLTSLEYL 277
           A LT+LE L
Sbjct: 191 AKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 8/140 (5%)

Query: 485 PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 544
             Y N  + R L L+       I+           +D S+N +             L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRL--FGSIASSLNLSSIMHLYLQNNA---LS 599
           L++ N +             L  L L+ N L   G +    +L S+ +L +  N      
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 600 GQIPSTLFRSTELLTLDLRD 619
                 +++  ++  LD + 
Sbjct: 129 HYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 31/141 (21%), Positives = 45/141 (31%), Gaps = 8/141 (5%)

Query: 141 LNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRN 200
           +  +    N    + L+L    I           L   + +D S N I   L      R 
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRR 64

Query: 201 LKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG----QLPWCLSDLIGLKVLDIS 256
           LK L + NN +    E        +LTEL L  N+L           L  L  L +L   
Sbjct: 65  LKTLLVNNNRICRIGEGLDQAL-PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 257 FNHLSGNLPSVIANLTSLEYL 277
             +       VI  +  +  L
Sbjct: 124 VTNKKHYRLYVIYKVPQVRVL 144

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/144 (9%), Positives = 41/144 (28%), Gaps = 1/144 (0%)

Query: 423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH 482
           +  +++    +  + +   + L  L +   +    L    +     L  L + ++     
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 483 IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD 542
               +    +L  L L  N         +       ++   N L       W+  +    
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG 131

Query: 543 VLLMSKNHLEGNIPVQINNFRQLQ 566
           +  + +  L+ +    + +     
Sbjct: 132 LGGVPEQKLQCHGQGPLAHMPNAS 155

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 11/169 (6%)

Query: 244 LSDLIGLKVLDISFNHLSGNLPSV------IANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
             +   +   +     L G +P +      ++ L + ++LALS NN +    +S L+   
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---ISSLSGME 70

Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLV 357
           NL +  L +  NL  K EN             + N     S +    + + L +S+NK+ 
Sbjct: 71  NLRI--LSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128

Query: 358 GNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLT 406
                  +    KLE L L+ N      +      +    +     NL 
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 11/126 (8%)

Query: 75  ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLY 134
             Q LDL G   D            +     +LN   ++   ++      +  L +LNL 
Sbjct: 23  SQQALDLKGLRSD--------PDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLS 73

Query: 135 YNRIGGLNP-SQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT 193
            NR+  L+  S  +    NLK LNLS N + S    L       LE L L  N +S +  
Sbjct: 74  NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLSDTFR 132

Query: 194 ELAPFR 199
           + + + 
Sbjct: 133 DQSTYI 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	783
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.86

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=7.9e-33  Score=288.16  Aligned_cols=286  Identities=26%  Similarity=0.391  Sum_probs=235.6

Q ss_pred             ccccccccCCCCCCCCCcCCCCCCCCcc--cceeEecCCC--CcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCC
Q 047035            2 FFLSISDREYADEILTSWVDDGISDCCD--WERVTCDATA--GQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQ   77 (783)
Q Consensus         2 ~~~~~~~~~~~~~~~~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~   77 (783)
                      |++++|+.-..+..+++|..+  +|||.  |.||+|+..+  +||+++++++.++        .+...-+..+.++++|+
T Consensus        10 aLl~~k~~~~~~~~l~sW~~~--~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l--------~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_          10 ALLQIKKDLGNPTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--------PKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             HHHHHHHHTTCCGGGTTCCTT--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--------SSCEECCGGGGGCTTCS
T ss_pred             HHHHHHHHCCCCCcCCCCCCC--CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCC--------CCCCCCChHHhcCcccc
Confidence            455555543334578999754  79994  9999998643  4899999999876        22222346789999999


Q ss_pred             EEeCCC-CCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeE
Q 047035           78 ILDLSG-NYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKAL  156 (783)
Q Consensus        78 ~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  156 (783)
                      +|+|++ |.+.|.+|    ..++++++|++|+|++|++.+..+..+..+++|+++++++|.+.+.+|. .+.+++.|+++
T Consensus        80 ~L~Ls~~N~l~g~iP----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l  154 (313)
T d1ogqa_          80 FLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGI  154 (313)
T ss_dssp             EEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEE
T ss_pred             ccccccccccccccc----cccccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCccccee
Confidence            999986 78888888    7899999999999999999988888899999999999999999888885 79999999999


Q ss_pred             eCCCCCCCCCcCccccCCCCCC-CEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCc
Q 047035          157 NLSWNGISSGATRLGLGNLTNL-EVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN  234 (783)
Q Consensus       157 ~L~~n~l~~~~~~~~l~~l~~L-~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n  234 (783)
                      ++++|.+.+..+. .+..+..+ +.+++++|++++..+ .+..+. ...+++..+...+.++ ..+..+++++.+++++|
T Consensus       155 ~l~~n~l~~~ip~-~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         155 TFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             ECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSCCSEEECCSS
T ss_pred             ecccccccccccc-ccccccccccccccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccc
Confidence            9999999876554 56667665 899999999998777 566654 4579999999888777 67889999999999999


Q ss_pred             cccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035          235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS  308 (783)
Q Consensus       235 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~  308 (783)
                      .+.+.+| .++.+++|++|++++|++++.+|.+|+++++|++|+|++|+++|.+|.  ++++++|+.+++.+|+
T Consensus       232 ~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred             ccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCc
Confidence            9987655 688899999999999999999999999999999999999999999884  4556666655555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.2e-30  Score=271.47  Aligned_cols=254  Identities=28%  Similarity=0.429  Sum_probs=179.6

Q ss_pred             ceEEeCCCCcccc--cCCccccCCCCCCeeeccC-CcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEE
Q 047035          420 LMYIDISKNNFEG--NIPYSIGEMKELFLLDLSR-NKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWL  496 (783)
Q Consensus       420 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  496 (783)
                      ++.|+|++|.+.+  .+|..++++++|++|++++ |.++|.+|.. +.++++|++|++++|++.+..+..+..++.|+.+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhccc
Confidence            4455555555444  3455556666666666654 4555555554 3456666666666666666555556666666666


Q ss_pred             EccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCC-cEEECCCCcccccCcccccCCCCCCEEeCCCccc
Q 047035          497 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL-DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL  575 (783)
Q Consensus       497 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  575 (783)
                      ++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. ..++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            666666666666666667777777777777776777666666554 66777777777777776666544 3677777777


Q ss_pred             cccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcch
Q 047035          576 FGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIAL  654 (783)
Q Consensus       576 ~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l  654 (783)
                      .+.+|..+ .+++++.+++++|.+.+.+| .+..+++|+.|+|++|+++|.+|++|+++++|++|+|++|+++|.+|. +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            77777776 77778888888888776655 577788899999999999888999999999999999999999988884 6


Q ss_pred             hCCCCCCEEecCCCc-Cccc-CCcc
Q 047035          655 CQLQKLGILDLSHNK-LNGS-IPSC  677 (783)
Q Consensus       655 ~~l~~L~~L~ls~N~-l~g~-iP~~  677 (783)
                      +++++|+.+++++|+ +.|. +|+|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             ccCCCCCHHHhCCCccccCCCCCCC
Confidence            888899999999997 5664 6765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.1e-25  Score=241.33  Aligned_cols=320  Identities=23%  Similarity=0.261  Sum_probs=207.8

Q ss_pred             CCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEE
Q 047035          319 PTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL  398 (783)
Q Consensus       319 ~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  398 (783)
                      .+++|++|++++|+++.+++ +..+++|++|++++|++.+. +.  ...+++|+.|+++++.+++..  .......+...
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i-~~--l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~  137 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-TP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRL  137 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccc-cc--ccccccccccccccccccccc--ccccccccccc
Confidence            34455555556666665543 55666666666666666532 22  235666666666666665542  22333445555


Q ss_pred             EcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcc
Q 047035          399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN  478 (783)
Q Consensus       399 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  478 (783)
                      ....|.+....+... .............     .....+...+.........|....   ...+..+++++.+++++|.
T Consensus       138 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~l~~n~  208 (384)
T d2omza2         138 ELSSNTISDISALSG-LTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQ  208 (384)
T ss_dssp             EEEEEEECCCGGGTT-CTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSC
T ss_pred             ccccccccccccccc-ccccccccccccc-----chhhhhcccccccccccccccccc---ccccccccccceeeccCCc
Confidence            555555442211111 1111111111111     111223344444555555554431   2234567888888888888


Q ss_pred             ccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccc
Q 047035          479 FYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ  558 (783)
Q Consensus       479 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  558 (783)
                      +.+..+  +..+++|++|++++|.++. + ..+..+++|+.|++++|.+++..+  ++.+++|+.|++++|++++..  .
T Consensus       209 i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~  280 (384)
T d2omza2         209 ISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--P  280 (384)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--G
T ss_pred             cCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--c
Confidence            776443  4566788888888888874 2 356778888888888888876443  777888888998888887543  3


Q ss_pred             ccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCE
Q 047035          559 INNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRV  638 (783)
Q Consensus       559 ~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  638 (783)
                      +..++.++.++++.|++.+ ++....++++++|++++|++++. + .+..+++|++|++++|++++ +| .+.++++|++
T Consensus       281 ~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~  355 (384)
T d2omza2         281 LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINW  355 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             ccccccccccccccccccc-ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCE
Confidence            6778888899999888875 33333788889999999998854 3 37888999999999998864 44 6888999999


Q ss_pred             EeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035          639 LLLRGNYLQGQIPIALCQLQKLGILDLSHN  668 (783)
Q Consensus       639 L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  668 (783)
                      |++++|++++..|  ++++++|+.|+|++|
T Consensus       356 L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         356 LSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999986654  788999999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.3e-25  Score=236.53  Aligned_cols=356  Identities=26%  Similarity=0.291  Sum_probs=177.2

Q ss_pred             eCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCC
Q 047035           80 DLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS  159 (783)
Q Consensus        80 ~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~  159 (783)
                      .++...+++.+.      ...+.+|++|+++++.++.  .+.++.+++|++|+|++|++++. +  .++++++|++|+++
T Consensus        28 ~l~~~~~~~~~~------~~~l~~l~~L~l~~~~I~~--l~gl~~L~nL~~L~Ls~N~l~~l-~--~l~~L~~L~~L~L~   96 (384)
T d2omza2          28 VLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI-T--PLKNLTKLVDILMN   96 (384)
T ss_dssp             HTTCSSTTSEEC------HHHHTTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECC
T ss_pred             HhCCCCCCCccC------HHHhCCCCEEECCCCCCCC--ccccccCCCCCEEeCcCCcCCCC-c--cccCCccccccccc
Confidence            455555554332      3356678888888887764  24567778888888888877775 2  37777788888888


Q ss_pred             CCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCcccccc
Q 047035          160 WNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQ  239 (783)
Q Consensus       160 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~  239 (783)
                      +|.+.+..   .++++++|+.|+++++.+++... ......+.......+.+..... .................     
T Consensus        97 ~n~i~~i~---~l~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-----  166 (384)
T d2omza2          97 NNQIADIT---PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVT-----  166 (384)
T ss_dssp             SSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCC-----
T ss_pred             cccccccc---ccccccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccc-----
Confidence            87777653   36677777777777777664333 2333455555555544432111 11111111111111111     


Q ss_pred             CCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCC
Q 047035          240 LPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIP  319 (783)
Q Consensus       240 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  319 (783)
                      ....+...+.........+...  ....+..+++++.+++++|.+.+..|   ...++                      
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~----------------------  219 (384)
T d2omza2         167 DLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP---LGILT----------------------  219 (384)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCT----------------------
T ss_pred             hhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc---ccccC----------------------
Confidence            1122333344444444444332  22334555555666665555543222   12222                      


Q ss_pred             CccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEE
Q 047035          320 TFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLD  399 (783)
Q Consensus       320 ~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  399 (783)
                        +|+++++++|.++.++ .+..+++|+.+++++|.+.+..+   +..+++|++|+++++.+++..  ++..        
T Consensus       220 --~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~~~l~~~~--~~~~--------  283 (384)
T d2omza2         220 --NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNIS--PLAG--------  283 (384)
T ss_dssp             --TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCG--GGTT--------
T ss_pred             --CCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc---ccccccCCEeeccCcccCCCC--cccc--------
Confidence              3333444444444332 23444455555555554442221   123444444444444444331  2233        


Q ss_pred             cccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccc
Q 047035          400 ISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF  479 (783)
Q Consensus       400 L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  479 (783)
                                       ++.++.+++..|.+.+  ...+..+++++.|++++|++++ ++.  +..+++|++|++++|++
T Consensus       284 -----------------~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~-l~~--l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         284 -----------------LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             -----------------CTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCC
T ss_pred             -----------------cccccccccccccccc--ccccchhcccCeEECCCCCCCC-Ccc--cccCCCCCEEECCCCCC
Confidence                             4444555555555443  1224445555555555555542 221  34455555555555555


Q ss_pred             cccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCC
Q 047035          480 YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN  525 (783)
Q Consensus       480 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n  525 (783)
                      ++ + +.+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       342 ~~-l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SD-V-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-C-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-C-hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            43 1 235555566666666666554333  455566666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.5e-23  Score=214.88  Aligned_cols=270  Identities=21%  Similarity=0.259  Sum_probs=184.5

Q ss_pred             ccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEEC
Q 047035          395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDV  474 (783)
Q Consensus       395 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  474 (783)
                      .+.++-++.+++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+. .++...+.+++.|++|++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            444555555554 555544   245666666666666444445666666777777766666 444444566667777777


Q ss_pred             cCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccc--ccCCCCcCCCCCCcEEECCCCccc
Q 047035          475 SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS--GHIPCWIGNFSYLDVLLMSKNHLE  552 (783)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~  552 (783)
                      ++|+++. +|..  ....++.|.+.+|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.+.
T Consensus        87 ~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            7766654 2322  2345666777777766555555566666777777666432  344556667777888888887776


Q ss_pred             ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhcc
Q 047035          553 GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQIN  631 (783)
Q Consensus       553 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  631 (783)
                       .+|..+  +++|+.|++++|...+..+..+ .++.+++|++++|.+++..+..+.++++|++|+|++|+++ .+|.++.
T Consensus       164 -~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 -TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             -SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             -ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence             344433  5678888888888877777777 7788888888888888777888888888999999998886 5688888


Q ss_pred             CCcCCCEEeCcCCcccccCCcc------hhCCCCCCEEecCCCcCc-ccCCc
Q 047035          632 NHSELRVLLLRGNYLQGQIPIA------LCQLQKLGILDLSHNKLN-GSIPS  676 (783)
Q Consensus       632 ~l~~L~~L~L~~N~l~~~~p~~------l~~l~~L~~L~ls~N~l~-g~iP~  676 (783)
                      .+++|++|+|++|+++...+..      ...+.+|+.|+|++|++. +.+|+
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            8899999999999888443222      356788999999999985 45554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3e-23  Score=214.29  Aligned_cols=258  Identities=21%  Similarity=0.201  Sum_probs=175.6

Q ss_pred             CCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEE
Q 047035          393 DLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYL  472 (783)
Q Consensus       393 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  472 (783)
                      +.+++|++++|+++ .+|...+..+++|++|++++|.+....|..|.++++|+.|++++|+++ .+|...   ...++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhh
Confidence            45666666666665 444433345666677777766666555666666777777777777665 455432   3466667


Q ss_pred             ECcCccccccCCCcccCCCCccEEEccCcccc--cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCc
Q 047035          473 DVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH  550 (783)
Q Consensus       473 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  550 (783)
                      ++.+|.+.+..+..+.....++.+....|...  ...+..+..+++|+.+++++|.+.. +|..+  +++|+.|++++|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCc
Confidence            77777666554445555666666666665432  2334556677778888888887763 44332  5678888888888


Q ss_pred             ccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchh
Q 047035          551 LEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQ  629 (783)
Q Consensus       551 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  629 (783)
                      .++..+..+..++.+++|++++|++.+..+..+ ++++|++|+|++|+++ .+|.++.++++|++|+|++|+++..-+..
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhh
Confidence            887888888888888888888888887777666 7888888888888887 67888888888999999988887543323


Q ss_pred             ------ccCCcCCCEEeCcCCccc-ccC-CcchhCCCC
Q 047035          630 ------INNHSELRVLLLRGNYLQ-GQI-PIALCQLQK  659 (783)
Q Consensus       630 ------l~~l~~L~~L~L~~N~l~-~~~-p~~l~~l~~  659 (783)
                            ...+++|+.|+|++|.+. ..+ |..|.-+..
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             ccCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence                  345678999999999875 233 444444333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-24  Score=219.51  Aligned_cols=266  Identities=20%  Similarity=0.180  Sum_probs=157.6

Q ss_pred             EEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcC-
Q 047035          398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE-  476 (783)
Q Consensus       398 L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~-  476 (783)
                      ++.++++++ .+|..+   .+.+++|+|++|++++..+.+|.++++|++|++++|++. .++...+..+..++.+.... 
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccc
Confidence            444555555 566544   245677777777777555556777777777777777776 44555556666677766543 


Q ss_pred             ccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc
Q 047035          477 NNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP  556 (783)
Q Consensus       477 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  556 (783)
                      +.+....+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++++..+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            34444445566666777777777776665555556666666677777766665555666666666666666666666556


Q ss_pred             ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcC
Q 047035          557 VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSE  635 (783)
Q Consensus       557 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  635 (783)
                      ..|.++++|+++++++|++++..|..+ .+++|++|++++|++.+..|..|.++++|+.|++++|++...-+. ..-...
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~  249 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW  249 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHH
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHH
Confidence            666666666666666666666556555 566666666666666655555666666666666666665543221 000122


Q ss_pred             CCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035          636 LRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       636 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      ++.+....+.+....|..+.+   ....+++.+.|+|
T Consensus       250 l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         250 LQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             HHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             HHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            333444445555555544432   2333444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.8e-24  Score=216.06  Aligned_cols=225  Identities=23%  Similarity=0.241  Sum_probs=112.6

Q ss_pred             EeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc
Q 047035          423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH  502 (783)
Q Consensus       423 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  502 (783)
                      ++.++++++ .+|..+.  +++++|+|++|+++ .+|...|.++++|++|++++|++....+..+..++.++.+....  
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~--   89 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--   89 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc--
Confidence            344444444 3443332  34455555555554 44444444555555555555555544444444444444444321  


Q ss_pred             cccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccc
Q 047035          503 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS  582 (783)
Q Consensus       503 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  582 (783)
                                           .+.+....|..|+++++|++|++++|.+....+..+....+|+.+++++|++++..+..
T Consensus        90 ---------------------~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          90 ---------------------NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             ---------------------CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---------------------ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence                                 22333333444444455555555555544444444444455555555555554433344


Q ss_pred             c-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCC
Q 047035          583 L-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG  661 (783)
Q Consensus       583 ~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  661 (783)
                      + .+++|++|++++|++++..+..|.++++|+.+++++|++++..|.+|.++++|+.|++++|++.+..|..|+.+++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            4 445555555555555544455555555555555555555555555555555555555555555555555555555555


Q ss_pred             EEecCCCcCcccC
Q 047035          662 ILDLSHNKLNGSI  674 (783)
Q Consensus       662 ~L~ls~N~l~g~i  674 (783)
                      .|++++|++.+..
T Consensus       229 ~L~l~~N~l~C~C  241 (284)
T d1ozna_         229 YLRLNDNPWVCDC  241 (284)
T ss_dssp             EEECCSSCEECSG
T ss_pred             EEEecCCCCCCCc
Confidence            5555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=196.89  Aligned_cols=200  Identities=26%  Similarity=0.277  Sum_probs=147.2

Q ss_pred             CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035          467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM  546 (783)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  546 (783)
                      ..+.+.+.+++.++. +|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|+++. +| .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            344445555555553 343332  356666666666665555566666667777777776663 22 2456677777777


Q ss_pred             CCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccC
Q 047035          547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR  625 (783)
Q Consensus       547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  625 (783)
                      ++|++++ .+..+..+++|++|++++|++.+..+..+ .+.++++|++++|.++...+..+..++.|+.+++++|++++.
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            7777763 45567777778888888887776555555 778888888888888866677777889999999999999888


Q ss_pred             CchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCccc
Q 047035          626 IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS  673 (783)
Q Consensus       626 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  673 (783)
                      .|..+..+++|+.|+|++|+++ .+|+.+..+++|+.|+|++|++...
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            8888999999999999999998 8898899999999999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.5e-21  Score=191.42  Aligned_cols=197  Identities=25%  Similarity=0.233  Sum_probs=121.0

Q ss_pred             CCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEc
Q 047035          443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDI  522 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L  522 (783)
                      .+.+++.+++.++ .+|..+.   +++++|+|++|++++..+.+|.++++|++|++++|.++. ++ .++.+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            3344444444444 3443221   345555555555554434445555555555555555542 22 2344566666666


Q ss_pred             cCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCccccc
Q 047035          523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQ  601 (783)
Q Consensus       523 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~  601 (783)
                      ++|++.+ .+..+.++++|+.|++++|.+.+..+..+..+.++++|++++|.+....+..+ .++.++.+++++|++++.
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            6666653 34556666666677777666666566666666777777777777665555555 667777777777777766


Q ss_pred             CchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035          602 IPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ  647 (783)
Q Consensus       602 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  647 (783)
                      .+..|..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            6666777777777777777776 67777777777888888877765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=2e-16  Score=166.06  Aligned_cols=180  Identities=22%  Similarity=0.229  Sum_probs=103.7

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035           74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL  153 (783)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L  153 (783)
                      .++++|||+++.++.. |    +   ..++|++|+|++|+++ .+|..   +.+|+.|++++|+++.. +.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~l-p----~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSSL-P----E---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSCC-C----S---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCCC-C----C---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh--h--cccc
Confidence            3678888888887653 3    2   2467888888888877 44543   35677888888776654 21  1  1357


Q ss_pred             CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccC
Q 047035          154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE  233 (783)
Q Consensus       154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  233 (783)
                      ++|++++|.+...+   .++.+++|++|+++++.+...+..   ...+..+.+..+.....   ..+..++.++.+++++
T Consensus       101 ~~L~L~~n~l~~lp---~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~---~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         101 EYLGVSNNQLEKLP---ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL---PELQNLPFLTAIYADN  171 (353)
T ss_dssp             CEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC---CCCTTCTTCCEEECCS
T ss_pred             cccccccccccccc---chhhhccceeeccccccccccccc---cccccchhhcccccccc---ccccccccceeccccc
Confidence            77777777776654   256677777777777766544332   23455555555444321   3355666666777666


Q ss_pred             ccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035          234 NNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ  285 (783)
Q Consensus       234 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  285 (783)
                      |.... .+.   .....+.+....+.+. .++ .+..++.|+.+++++|...
T Consensus       172 n~~~~-~~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         172 NSLKK-LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             SCCSS-CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-ccc---cccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            66542 121   1122344444444433 222 2345566666666655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=4.8e-17  Score=170.80  Aligned_cols=304  Identities=25%  Similarity=0.273  Sum_probs=194.9

Q ss_pred             cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcc
Q 047035          322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS  401 (783)
Q Consensus       322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  401 (783)
                      ++++|+++++.++.+|+.   .++|++|++++|+++ .+|.    ...+|++|++++|+++.+...+    +.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~lp----~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDLP----PLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSCC----TTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhhc----ccccccccc
Confidence            567778888888877753   457888888888877 6665    3467888888888777654332    458888888


Q ss_pred             cCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035          402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG  481 (783)
Q Consensus       402 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  481 (783)
                      +|.+. .+|..  ..+++|++|++++|.+... +.   ....+..+.+..+....   ...+..++.++.+++.+|....
T Consensus       107 ~n~l~-~lp~~--~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         107 NNQLE-KLPEL--QNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SSCCS-SCCCC--TTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccc-cccch--hhhccceeecccccccccc-cc---ccccccchhhccccccc---cccccccccceecccccccccc
Confidence            88876 55643  2577888888888777632 22   23455666666655442   1223456777888888777654


Q ss_pred             cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccC
Q 047035          482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN  561 (783)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  561 (783)
                      .. .   .....+.+...++.+. .++ .+..++.|+.+++++|.... +|.   ...++..+.+.++.+... +.   .
T Consensus       177 ~~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~  242 (353)
T d1jl5a_         177 LP-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---L  242 (353)
T ss_dssp             CC-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---C
T ss_pred             cc-c---cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc-cc---c
Confidence            22 1   1223455555555544 233 24567788888888877653 333   234577777777777632 22   2


Q ss_pred             CCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035          562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL  641 (783)
Q Consensus       562 l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  641 (783)
                      ...+...++..+.+.+.. .  -.......++..+.+.+. +   ..+++|++|+|++|++. .+|..   +++|+.|++
T Consensus       243 ~~~l~~~~~~~~~~~~l~-~--l~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L  311 (353)
T d1jl5a_         243 PQSLTFLDVSENIFSGLS-E--LPPNLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIA  311 (353)
T ss_dssp             CTTCCEEECCSSCCSEES-C--CCTTCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             cccccccccccccccccc-c--ccchhcccccccCccccc-c---ccCCCCCEEECCCCccC-ccccc---cCCCCEEEC
Confidence            345666777666654321 1  123345566666666532 2   23578999999999986 56754   578889999


Q ss_pred             cCCcccccCCcchhCCCCCCEEecCCCcCcccCCcc
Q 047035          642 RGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSC  677 (783)
Q Consensus       642 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  677 (783)
                      ++|+++ .+|..   +++|+.|++++|+++ .+|..
T Consensus       312 ~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         312 SFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             CCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            999988 67753   467899999999987 56653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.7e-17  Score=162.35  Aligned_cols=189  Identities=26%  Similarity=0.343  Sum_probs=114.1

Q ss_pred             cCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCC
Q 047035           98 SGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTN  177 (783)
Q Consensus        98 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  177 (783)
                      ++.+.+|++|++.+|.++. + +.+..+++|++|++++|.+.+..   .+.++++|+++++++|.++...   .++.+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~i~---~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVS---AIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc---cccccccccccccccccccccc---ccccccc
Confidence            3445566666666666553 2 34566666666666666665542   2566666666666666655432   3556666


Q ss_pred             CCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccc
Q 047035          178 LEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISF  257 (783)
Q Consensus       178 L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  257 (783)
                      |++++++++...+. ..+...+.++.+.++.+.+...   ..+..+++|++|++++|.+.+.  ..++++++|++|++++
T Consensus       109 L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         109 IKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD  182 (227)
T ss_dssp             CCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             cccccccccccccc-chhccccchhhhhchhhhhchh---hhhccccccccccccccccccc--hhhcccccceecccCC
Confidence            66666666655432 2345556666666666665432   2355666777777777766532  2366777777777777


Q ss_pred             ccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEec
Q 047035          258 NHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLK  305 (783)
Q Consensus       258 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~  305 (783)
                      |++++ ++ .++++++|++|++++|+++ .++.  ++++++|+.|+++
T Consensus       183 n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         183 NKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEE
T ss_pred             CccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEee
Confidence            77764 33 3667777777777777766 3442  6677777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.8e-17  Score=159.82  Aligned_cols=195  Identities=25%  Similarity=0.314  Sum_probs=161.0

Q ss_pred             cCcccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc
Q 047035           65 LNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPS  144 (783)
Q Consensus        65 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  144 (783)
                      .|...++.+.+|++|++.+|.++..      +.+..+++|++|++++|.+++..  .+..+++|+++++++|.++.. + 
T Consensus        32 ~d~~~~~~l~~L~~L~l~~~~i~~l------~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i-~-  101 (227)
T d1h6ua2          32 TDTVTQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV-S-  101 (227)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC-G-
T ss_pred             CCcCCHHHcCCcCEEECCCCCCCcc------hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc-c-
Confidence            4455667789999999999988754      45788999999999999998643  389999999999999988865 2 


Q ss_pred             hhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCC
Q 047035          145 QGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELK  224 (783)
Q Consensus       145 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  224 (783)
                       .+.++++|++++++++......   .+...+.++.+.++.+.+.... .+..+++|++|++++|.+.+.   ..+++++
T Consensus       102 -~l~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~---~~l~~l~  173 (227)
T d1h6ua2         102 -AIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL---TPLANLS  173 (227)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC---GGGTTCT
T ss_pred             -cccccccccccccccccccccc---hhccccchhhhhchhhhhchhh-hhccccccccccccccccccc---hhhcccc
Confidence             5889999999999999887654   4677899999999998876433 467788999999999988643   3488899


Q ss_pred             CCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcC
Q 047035          225 NLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD  281 (783)
Q Consensus       225 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  281 (783)
                      +|++|++++|++++ ++ .++.+++|++|++++|++++. + .++++++|++|++++
T Consensus       174 ~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            99999999999885 33 488999999999999999854 4 388999999999863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.3e-20  Score=199.32  Aligned_cols=199  Identities=22%  Similarity=0.177  Sum_probs=115.3

Q ss_pred             cCCCCcEEECcCcccccc-----CCCcccCCCCccEEEccCcccccc----cccccccCCCCcEEEccCCcccccCCCCc
Q 047035          465 RCASLEYLDVSENNFYGH-----IFPTYMNLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLLSGHIPCWI  535 (783)
Q Consensus       465 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  535 (783)
                      ..+.++.+++.+|.+...     ..........++.+++++|.+...    ....+...+.++.+++++|.+.......+
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            345556666655544221     112223345566666666655432    12233445666777777766643211111


Q ss_pred             -----CCCCCCcEEECCCCcccccCcc----cccCCCCCCEEeCCCcccccc----ccccc--CcCCCcEEEccCCcccc
Q 047035          536 -----GNFSYLDVLLMSKNHLEGNIPV----QINNFRQLQLLDLSENRLFGS----IASSL--NLSSIMHLYLQNNALSG  600 (783)
Q Consensus       536 -----~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~l~~L~~L~L~~n~l~~  600 (783)
                           .....|+.+++++|.++.....    .+...++|++|+|++|++...    ++..+  ..+.|++|+|++|+++.
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence                 1234677777777776644322    234456788888888877542    23222  35668888888888863


Q ss_pred             ----cCchhhhcCCCCcEEECcCCccccCCchhc----c-CCcCCCEEeCcCCcccccCCcch----hCCCCCCEE
Q 047035          601 ----QIPSTLFRSTELLTLDLRDNKFFGRIPDQI----N-NHSELRVLLLRGNYLQGQIPIAL----CQLQKLGIL  663 (783)
Q Consensus       601 ----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L  663 (783)
                          .++..+..+++|++|||++|+++......+    . +...|+.|++.+|.+....+..+    ...++|++|
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence                245566777888888888888865433322    2 33468889999888876554443    345666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.1e-20  Score=203.13  Aligned_cols=199  Identities=21%  Similarity=0.132  Sum_probs=115.2

Q ss_pred             cCCceEEeCCCCcccc-----cCCccccCCCCCCeeeccCCcCccccCh---hhhhcCCCCcEEECcCccccccCCCc--
Q 047035          417 IQKLMYIDISKNNFEG-----NIPYSIGEMKELFLLDLSRNKFSGDLSA---TSVIRCASLEYLDVSENNFYGHIFPT--  486 (783)
Q Consensus       417 l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~--  486 (783)
                      .+.++.+++.+|.+..     ..+........++.+++++|.+......   ..+...+.++.+++++|.+.......  
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3445555555554321     1122233445666666666665422111   11234566777777777664321111  


Q ss_pred             ---ccCCCCccEEEccCcccccccc----cccccCCCCcEEEccCCccccc----CCCCcC-CCCCCcEEECCCCccccc
Q 047035          487 ---YMNLTQLRWLYLKNNHFTGKIK----AGLLNSHGLVVLDISNNLLSGH----IPCWIG-NFSYLDVLLMSKNHLEGN  554 (783)
Q Consensus       487 ---~~~l~~L~~L~L~~n~l~~~~~----~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~-~l~~L~~L~L~~n~l~~~  554 (783)
                         ......|+.+++++|.++....    ..+..+++|++|+|++|.+...    ++..+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               1234567777777777664432    2334556788888888887642    233332 356788888888888743


Q ss_pred             ----CcccccCCCCCCEEeCCCcccccccc----ccc--CcCCCcEEEccCCcccccCchhh----hcCCCCcEE
Q 047035          555 ----IPVQINNFRQLQLLDLSENRLFGSIA----SSL--NLSSIMHLYLQNNALSGQIPSTL----FRSTELLTL  615 (783)
Q Consensus       555 ----~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~--~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L  615 (783)
                          ++..+..+++|++|+|++|+++....    ..+  +...|+.|++.+|.+....+..+    ...++|++|
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence                44556677888899999888865322    222  34578899999988875554444    244666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=9.6e-17  Score=154.48  Aligned_cols=165  Identities=28%  Similarity=0.346  Sum_probs=91.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCC
Q 047035          100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE  179 (783)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  179 (783)
                      .+..|++|++++|.++..  ..+..+++|++|++++|++++. +  .++.+++|++|++++|+++...   .+.++++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l-~--~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-K--PLANLKNLGWLFLDENKVKDLS---SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCGG---GGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCc-c--ccccCccccccccccccccccc---ccccccccc
Confidence            345666666666666542  2355666666666666666654 2  2556666666666666665532   355566666


Q ss_pred             EEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccccc
Q 047035          180 VLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNH  259 (783)
Q Consensus       180 ~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  259 (783)
                      .|++++|.+.. ++.+..+++++.+++++|.+++.   ..+..+++|+++++++|++.+. + .+.++++|++|++++|+
T Consensus       116 ~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         116 SLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             EEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-ccccccccccccccccccccccc---cccccccccccccccccccccc-c-cccCCCCCCEEECCCCC
Confidence            66666665542 23455555555555555555421   2344555566666666555532 2 25555555555555555


Q ss_pred             CCccCchhhcCCCCCCEEeCc
Q 047035          260 LSGNLPSVIANLTSLEYLALS  280 (783)
Q Consensus       260 l~~~~p~~l~~l~~L~~L~L~  280 (783)
                      ++. +| .+.++++|++|+|+
T Consensus       190 i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         190 ISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCC-Ch-hhcCCCCCCEEEcc
Confidence            552 33 35555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.9e-16  Score=149.70  Aligned_cols=162  Identities=29%  Similarity=0.399  Sum_probs=97.8

Q ss_pred             CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCC
Q 047035          100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE  179 (783)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  179 (783)
                      .+.++++|++++|.++.  .+.++.+++|++|++++|++++. +  .++++++|++|++++|.+....   .++++++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~-~--~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIADIT---PLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCCG---GGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCc-c--cccCCccccccccccccccccc---ccccccccc
Confidence            34556666666665543  12355566666666666666554 1  2566666666666666655443   255666666


Q ss_pred             EEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccccc
Q 047035          180 VLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNH  259 (783)
Q Consensus       180 ~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  259 (783)
                      +|+++++..... +.+..+++|+.|++++|.+. .+  ..+..+++|++|++.+|++++. + .++++++|++|++++|+
T Consensus       110 ~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITDI-DPLKNLTNLNRLELSSNTIS-DI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc-cccchhhhhHHhhhhhhhhc-cc--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCC
Confidence            666666655432 23555666666666666664 22  2466677777777777777642 2 36777777777777777


Q ss_pred             CCccCchhhcCCCCCCEE
Q 047035          260 LSGNLPSVIANLTSLEYL  277 (783)
Q Consensus       260 l~~~~p~~l~~l~~L~~L  277 (783)
                      +++ ++ .++++++|++|
T Consensus       184 i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-CG-GGGGCTTCSEE
T ss_pred             CCC-Cc-cccCCCCCCcC
Confidence            764 33 46777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.8e-16  Score=151.18  Aligned_cols=182  Identities=30%  Similarity=0.380  Sum_probs=148.6

Q ss_pred             EEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcC
Q 047035          106 ILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSA  185 (783)
Q Consensus       106 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~  185 (783)
                      ..++..+.+++.++  ...+.+|++|++++|.+.+. +  .+..+++|++|++++|.+++..   .++++++|++|++++
T Consensus        28 ~~~l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~~l-~--~l~~l~~L~~L~L~~n~i~~l~---~~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDE   99 (210)
T ss_dssp             HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCS
T ss_pred             HHHhCcCccCCccC--HHHhcCccEEECcCCCCCCc-h--hHhhCCCCCEEeCCCccccCcc---ccccCcccccccccc
Confidence            34556666655433  23567899999999999876 2  4889999999999999998865   368899999999999


Q ss_pred             CcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCc
Q 047035          186 NRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLP  265 (783)
Q Consensus       186 n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  265 (783)
                      |++++. +.+..+++|+.|++++|.+. .+  ..+..++.++.+++++|.+.+  +..+..+++|+++++++|++++. +
T Consensus       100 n~i~~l-~~l~~l~~L~~L~l~~~~~~-~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~  172 (210)
T d1h6ta2         100 NKVKDL-SSLKDLKKLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V  172 (210)
T ss_dssp             SCCCCG-GGGTTCTTCCEEECTTSCCC-CC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G
T ss_pred             cccccc-cccccccccccccccccccc-cc--ccccccccccccccccccccc--ccccccccccccccccccccccc-c
Confidence            999864 46888999999999999876 33  358889999999999999874  34578899999999999999853 3


Q ss_pred             hhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEecc
Q 047035          266 SVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKV  306 (783)
Q Consensus       266 ~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~  306 (783)
                       .+.++++|++|++++|.++ .++  .+.++++|++|++++
T Consensus       173 -~l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 -PLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEEE
T ss_pred             -cccCCCCCCEEECCCCCCC-CCh--hhcCCCCCCEEEccC
Confidence             3889999999999999987 566  378899999998753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.3e-17  Score=160.10  Aligned_cols=200  Identities=16%  Similarity=0.122  Sum_probs=108.2

Q ss_pred             CCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccC-CCcccCCCCccEEEccC-cccccccccccccCCCCcEE
Q 047035          443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHI-FPTYMNLTQLRWLYLKN-NHFTGKIKAGLLNSHGLVVL  520 (783)
Q Consensus       443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L  520 (783)
                      ++++|++++|.++ .+|...|.++++|++|++++|.+...+ +.+|..++.++++.+.. |.+....+..|.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            3444444444443 333333444444444444444443322 22344445555554432 34444444455555555555


Q ss_pred             EccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCC-CCCEEeCCCcccccccccccCcCCCcEE-EccCCc
Q 047035          521 DISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFR-QLQLLDLSENRLFGSIASSLNLSSIMHL-YLQNNA  597 (783)
Q Consensus       521 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~l~~L~~L-~L~~n~  597 (783)
                      ++++|.+....+ ..+..++.+..+...++.+....+..+..++ .++.|++++|+++...+..+..+.++++ ++++|+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            555555543222 1223344455555555566544445555543 6777777777777544444555555555 456677


Q ss_pred             ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcC
Q 047035          598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRG  643 (783)
Q Consensus       598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  643 (783)
                      ++...+..|.++++|++|++++|+++...+..+.+++.|+.+++.+
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            7743345678888888888888888754444567777776666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.5e-17  Score=160.50  Aligned_cols=182  Identities=18%  Similarity=0.085  Sum_probs=79.3

Q ss_pred             CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCC-CcccccCCccccCCCCCCeee
Q 047035          370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK-NNFEGNIPYSIGEMKELFLLD  448 (783)
Q Consensus       370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  448 (783)
                      ++++|++++|.++.+....+.++++|++|++++|.+...++...+..++.++++.+.. |.+....+..|.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555444334445555555555555554444443333445555555432 344444445555555555555


Q ss_pred             ccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCC-CccEEEccCcccccccccccccCCCCcEE-EccCCc
Q 047035          449 LSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLT-QLRWLYLKNNHFTGKIKAGLLNSHGLVVL-DISNNL  526 (783)
Q Consensus       449 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L-~Ls~n~  526 (783)
                      +++|.+....+......+..+..+...++.+....+..|..++ .++.|++++|+++...+..+ ...+++++ ++++|.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccc
Confidence            5555554221222222233333334444444333333333322 44444555544443222222 22232222 234444


Q ss_pred             ccccCCCCcCCCCCCcEEECCCCccc
Q 047035          527 LSGHIPCWIGNFSYLDVLLMSKNHLE  552 (783)
Q Consensus       527 l~~~~p~~l~~l~~L~~L~L~~n~l~  552 (783)
                      ++...+..|.++++|++|++++|+++
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCC
Confidence            44333333444444444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.1e-16  Score=148.03  Aligned_cols=179  Identities=32%  Similarity=0.398  Sum_probs=143.8

Q ss_pred             CEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECc
Q 047035          105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS  184 (783)
Q Consensus       105 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  184 (783)
                      ..+.++.+.+++.+  ....+.++++|++++|.+...   ..+..+++|++|++++|++++..   .++++++|++|+++
T Consensus        21 i~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l~   92 (199)
T d2omxa2          21 MKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMN   92 (199)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECC
T ss_pred             HHHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCcc---cccCCccccccccc
Confidence            34456666666532  345678999999999999875   25889999999999999998765   38899999999999


Q ss_pred             CCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccC
Q 047035          185 ANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNL  264 (783)
Q Consensus       185 ~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  264 (783)
                      +|.+... +.+..+++|++|+++++.....   ..+..+++|+.|++++|++.. + ..+..+++|+.|++.+|++++. 
T Consensus        93 ~n~~~~~-~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-  165 (199)
T d2omxa2          93 NNQIADI-TPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-  165 (199)
T ss_dssp             SSCCCCC-GGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-
T ss_pred             ccccccc-cccccccccccccccccccccc---cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-
Confidence            9988754 3588899999999999987642   357889999999999999873 3 3688899999999999999854 


Q ss_pred             chhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEE
Q 047035          265 PSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL  302 (783)
Q Consensus       265 p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L  302 (783)
                      + .++++++|++|++++|+++ .++  .++.+++|++|
T Consensus       166 ~-~l~~l~~L~~L~ls~N~i~-~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         166 K-PLANLTTLERLDISSNKVS-DIS--VLAKLTNLESL  199 (199)
T ss_dssp             G-GGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCSEE
T ss_pred             c-cccCCCCCCEEECCCCCCC-CCc--cccCCCCCCcC
Confidence            3 4889999999999999987 455  36778888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=9.6e-17  Score=152.16  Aligned_cols=171  Identities=21%  Similarity=0.235  Sum_probs=113.6

Q ss_pred             cEEEccCcccccccccccccCCCCcEEEccCCccccc-CCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCC
Q 047035          494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH-IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE  572 (783)
Q Consensus       494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  572 (783)
                      ++++.+++.++ .+|..+  .+++++|+|++|.|++. .+..|.++++|+.|++++|++.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            35556666665 345444  25677777777777643 345566777777777777777777777777777777777777


Q ss_pred             ccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCch-hccCCcCCCEEeCcCCcccccC
Q 047035          573 NRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPD-QINNHSELRVLLLRGNYLQGQI  650 (783)
Q Consensus       573 N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~  650 (783)
                      |++.+..|..| ++++|++|+|++|++++..|..|..+++|++|+|++|.+....+. ++.  ..++.+.+..+.++...
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            77776666666 677777777777777766677777777888888888877644321 221  23555667777777766


Q ss_pred             CcchhCCCCCCEEecCCCcCcc
Q 047035          651 PIALCQLQKLGILDLSHNKLNG  672 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l~g  672 (783)
                      |..   +..++.+||+.|.|..
T Consensus       166 p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         166 PSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             STT---TTTSBGGGSCTTTCCC
T ss_pred             Chh---hcCCEeeecCHhhCcC
Confidence            654   4456677888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.1e-16  Score=151.87  Aligned_cols=128  Identities=16%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             eeeccCCcCccccChhhhhcCCCCcEEECcCccccccC-CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccC
Q 047035          446 LLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHI-FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN  524 (783)
Q Consensus       446 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~  524 (783)
                      .++.++++++ .+|....   +++++|+|++|++++.+ +..|.++++|+.|++++|.+....+..+..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4444455544 4443321   34555555555554322 33444555555555555555555555555555555555555


Q ss_pred             CcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc
Q 047035          525 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG  577 (783)
Q Consensus       525 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  577 (783)
                      |++....|.+|.++++|++|+|++|++++..|..|..+++|++|+|++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            55555555555555556666666665555555555555556666665555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.8e-16  Score=155.97  Aligned_cols=224  Identities=18%  Similarity=0.186  Sum_probs=135.8

Q ss_pred             CEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCC
Q 047035          347 KFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS  426 (783)
Q Consensus       347 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~  426 (783)
                      +.+|++++.+.......+..  .....+.++........ .......+|++|++++|.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            45667666554333333321  23455566555544321 2224456788888888877654444555678889999998


Q ss_pred             CCcccccCCccccCCCCCCeeeccCCc-CccccChhhhhcCCCCcEEECcCcc-cccc-CCCcc-cCCCCccEEEccCcc
Q 047035          427 KNNFEGNIPYSIGEMKELFLLDLSRNK-FSGDLSATSVIRCASLEYLDVSENN-FYGH-IFPTY-MNLTQLRWLYLKNNH  502 (783)
Q Consensus       427 ~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~L~~n~  502 (783)
                      +|.+++..+..+..+++|++|++++|. ++..--......+++|++|++++|. +++. +...+ ..++.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            888877777778888889999998864 4421112234567888888888863 3321 11112 234677888887653


Q ss_pred             --cccc-cccccccCCCCcEEEccCCc-ccccCCCCcCCCCCCcEEECCCC-cccccCcccccCCCCCCEEeCCCc
Q 047035          503 --FTGK-IKAGLLNSHGLVVLDISNNL-LSGHIPCWIGNFSYLDVLLMSKN-HLEGNIPVQINNFRQLQLLDLSEN  573 (783)
Q Consensus       503 --l~~~-~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N  573 (783)
                        ++.. +.....++++|++|++++|. +++.....+.++++|++|++++| .+++.....++++++|+.|++++|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              3221 22233456777777777754 55555566666777777777764 455555555666666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8e-16  Score=155.40  Aligned_cols=258  Identities=16%  Similarity=0.190  Sum_probs=143.0

Q ss_pred             cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECc
Q 047035          396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS  475 (783)
Q Consensus       396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  475 (783)
                      +.+|++++.+.......+..  .....+.++...+..... ......+|++|++++|.+........+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35666666553222222211  234455555555442222 223445677777777766544334455666777777777


Q ss_pred             CccccccCCCcccCCCCccEEEccCcc-cccc-cccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccc
Q 047035          476 ENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGK-IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG  553 (783)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  553 (783)
                      +|.+.+..+..+..+++|++|++++|. ++.. +......+++|++|++++|.                       .++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~-----------------------~~~~  136 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DFTE  136 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TCCH
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc-----------------------cccc
Confidence            776655555555566666666666642 3321 11122344555555555542                       1211


Q ss_pred             c-Ccccc-cCCCCCCEEeCCCcc--ccc-cccccc-CcCCCcEEEccCC-cccccCchhhhcCCCCcEEECcCC-ccccC
Q 047035          554 N-IPVQI-NNFRQLQLLDLSENR--LFG-SIASSL-NLSSIMHLYLQNN-ALSGQIPSTLFRSTELLTLDLRDN-KFFGR  625 (783)
Q Consensus       554 ~-~p~~~-~~l~~L~~L~Ls~N~--l~~-~~p~~~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~  625 (783)
                      . +...+ ..+++|+.|+++++.  ++. .+.... ++++|++|++++| .+++..+..+.++++|++|++++| .+++.
T Consensus       137 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            1 11111 123456666666542  222 122222 5677777777765 356666677788888888888885 56666


Q ss_pred             CchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035          626 IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML  682 (783)
Q Consensus       626 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~  682 (783)
                      ....++++++|+.|+++++--.+.++.....+++|   ++..+++++..|+++++..
T Consensus       217 ~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGNKK  270 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSSTT
T ss_pred             HHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCCCccCccc
Confidence            66677888899999998872222233223445554   4678888888777776543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=8e-14  Score=120.59  Aligned_cols=104  Identities=24%  Similarity=0.272  Sum_probs=76.2

Q ss_pred             CEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeE
Q 047035           77 QILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKAL  156 (783)
Q Consensus        77 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L  156 (783)
                      |+|||++|.++..      +.+..+++|++|++++|.++ .+|+.++.+++|++|++++|.+++. |  .+.++++|++|
T Consensus         1 R~L~Ls~n~l~~l------~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC------CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC------cccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C--ccccccccCeE
Confidence            5788888887643      34677778888888888886 4566677888888888888887765 3  47778888888


Q ss_pred             eCCCCCCCCCcCccccCCCCCCCEEECcCCcCcc
Q 047035          157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISG  190 (783)
Q Consensus       157 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~  190 (783)
                      ++++|++........++.+++|++|++++|+++.
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            8888877766543356777777777777777754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=9e-15  Score=152.51  Aligned_cols=246  Identities=20%  Similarity=0.232  Sum_probs=138.7

Q ss_pred             hcCCceEEeCCCCccccc----CCccccCCCCCCeeeccCCcCccc---cCh------hhhhcCCCCcEEECcCcccccc
Q 047035          416 VIQKLMYIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSGD---LSA------TSVIRCASLEYLDVSENNFYGH  482 (783)
Q Consensus       416 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~---i~~------~~~~~l~~L~~L~L~~n~l~~~  482 (783)
                      ....+++|+|++|.+...    +...+...++|+.++++++.....   .+.      ..+..+++|+.|++++|.+...
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            456777888887776532    223455667777777776644311   111      1123345566666666655432


Q ss_pred             CC----CcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc----
Q 047035          483 IF----PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN----  554 (783)
Q Consensus       483 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----  554 (783)
                      ..    ..+..+++|++|++++|.+.......++.  .+..+         .........+.|+.+.+++|++...    
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             cccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccccccccc
Confidence            11    11223445555555555443111110000  00000         0000012345566677776666532    


Q ss_pred             CcccccCCCCCCEEeCCCcccccc-----ccccc-CcCCCcEEEccCCccccc----CchhhhcCCCCcEEECcCCcccc
Q 047035          555 IPVQINNFRQLQLLDLSENRLFGS-----IASSL-NLSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFG  624 (783)
Q Consensus       555 ~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  624 (783)
                      +...+..++.|++|++++|++...     +...+ .+++|+.|++++|.++..    +...+..++.|++|+|++|.+.+
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            233345567778888888777532     22333 567788888888877532    44566788899999999998875


Q ss_pred             CCch----hccC--CcCCCEEeCcCCccccc----CCcchh-CCCCCCEEecCCCcCcc
Q 047035          625 RIPD----QINN--HSELRVLLLRGNYLQGQ----IPIALC-QLQKLGILDLSHNKLNG  672 (783)
Q Consensus       625 ~~p~----~l~~--l~~L~~L~L~~N~l~~~----~p~~l~-~l~~L~~L~ls~N~l~g  672 (783)
                      .-..    .+..  .+.|+.|++++|++...    +...+. +++.|+.|++++|++..
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            5322    2332  46799999999998753    233343 57899999999999964

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=124.91  Aligned_cols=125  Identities=17%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             CCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035          537 NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD  616 (783)
Q Consensus       537 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  616 (783)
                      +...+++|+|++|+|+ .++..+..+++|+.|++++|++.. ++....+++|++|++++|+++...+..+..+++|+.|+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3344444444444444 223333444555555555555542 22222455555555555555543344445566666666


Q ss_pred             CcCCccccCCc-hhccCCcCCCEEeCcCCcccccCC----cchhCCCCCCEEe
Q 047035          617 LRDNKFFGRIP-DQINNHSELRVLLLRGNYLQGQIP----IALCQLQKLGILD  664 (783)
Q Consensus       617 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~  664 (783)
                      +++|++...-. ..+..+++|+.|++++|.++. .|    ..++.+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            66666643211 345666777777777776653 33    2466677777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-13  Score=124.09  Aligned_cols=125  Identities=21%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             ccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcE
Q 047035          512 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMH  590 (783)
Q Consensus       512 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~  590 (783)
                      .++..+++|+|++|+|+. ++..+..+++|+.|++++|+++. ++ .+..+++|++|++++|+++...+..+ .+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            344455555555555552 34444445555555555555552 22 35555666666666666654433333 5666666


Q ss_pred             EEccCCcccccCc--hhhhcCCCCcEEECcCCccccCC---chhccCCcCCCEEe
Q 047035          591 LYLQNNALSGQIP--STLFRSTELLTLDLRDNKFFGRI---PDQINNHSELRVLL  640 (783)
Q Consensus       591 L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  640 (783)
                      |++++|+++. ++  ..+..+++|++|++++|+++...   +..+..+++|+.||
T Consensus        92 L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccc-cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666652 22  34566677777777777764322   12456677777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=4.6e-14  Score=147.03  Aligned_cols=235  Identities=17%  Similarity=0.157  Sum_probs=130.3

Q ss_pred             cCCCCccEEEcccCcCCCCCChhhh---hhcCCceEEeCCCCccccc----------CCccccCCCCCCeeeccCCcCcc
Q 047035          390 VKHDLLRHLDISNNNLTGMLPQNMG---IVIQKLMYIDISKNNFEGN----------IPYSIGEMKELFLLDLSRNKFSG  456 (783)
Q Consensus       390 ~~~~~L~~L~L~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~L~~n~l~~  456 (783)
                      .....+++|++++|.+.......++   ...++|+.++++++.....          +...+..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            5578899999999988643333332   2457999999998764321          12335678999999999999874


Q ss_pred             ccCh---hhhhcCCCCcEEECcCccccccCCCc-------------ccCCCCccEEEccCcccccc----cccccccCCC
Q 047035          457 DLSA---TSVIRCASLEYLDVSENNFYGHIFPT-------------YMNLTQLRWLYLKNNHFTGK----IKAGLLNSHG  516 (783)
Q Consensus       457 ~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~  516 (783)
                      .-..   ..+..+++|++|++++|.+.......             ....+.|+.+.+++|.+...    +...+..++.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            3111   23456789999999999875321111             12345566666666655422    1222334455


Q ss_pred             CcEEEccCCccccc-----CCCCcCCCCCCcEEECCCCccccc----CcccccCCCCCCEEeCCCcccccccccccCcCC
Q 047035          517 LVVLDISNNLLSGH-----IPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLQLLDLSENRLFGSIASSLNLSS  587 (783)
Q Consensus       517 L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~  587 (783)
                      |+.|++++|.+...     +...+..+++|+.|++++|.++..    +...+..                       +++
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-----------------------~~~  244 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-----------------------WPN  244 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-----------------------CTT
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc-----------------------ccc
Confidence            55666555554421     122233444444444444444321    2223334                       445


Q ss_pred             CcEEEccCCcccccCc----hhhhc--CCCCcEEECcCCccccC----Cchhcc-CCcCCCEEeCcCCccc
Q 047035          588 IMHLYLQNNALSGQIP----STLFR--STELLTLDLRDNKFFGR----IPDQIN-NHSELRVLLLRGNYLQ  647 (783)
Q Consensus       588 L~~L~L~~n~l~~~~p----~~l~~--l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~L~~N~l~  647 (783)
                      |++|+|++|.+++.-.    ..+..  .+.|++|++++|++...    +...+. +.++|+.|++++|++.
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            5555555555443211    12222  24566666666666432    222232 4566777777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=8.2e-13  Score=114.10  Aligned_cols=55  Identities=25%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             EEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccc
Q 047035          519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF  576 (783)
Q Consensus       519 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  576 (783)
                      .|++++|+++ .++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|+++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            3444444444 222 2444444444444444444 33444444444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=2e-13  Score=128.92  Aligned_cols=127  Identities=23%  Similarity=0.311  Sum_probs=74.6

Q ss_pred             CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCC
Q 047035          533 CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTE  611 (783)
Q Consensus       533 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~  611 (783)
                      ..+..+++|++|++++|+++ .++ .+..+++|++|++++|++. .+|... .+++|++|++++|+++. + ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence            34555556666666666655 233 3555666666666666654 334333 44566666666666652 2 34666677


Q ss_pred             CcEEECcCCccccCCc-hhccCCcCCCEEeCcCCcccccCCcc----------hhCCCCCCEEe
Q 047035          612 LLTLDLRDNKFFGRIP-DQINNHSELRVLLLRGNYLQGQIPIA----------LCQLQKLGILD  664 (783)
Q Consensus       612 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~----------l~~l~~L~~L~  664 (783)
                      |+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7777777777653211 35666777777777777766444322          55677777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=5.6e-13  Score=125.84  Aligned_cols=128  Identities=20%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             ccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCC
Q 047035          508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSS  587 (783)
Q Consensus       508 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~  587 (783)
                      +..+..+++|++|++++|.++. ++ .+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++. ++....+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~~  116 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVN  116 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HHHHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-ccccccccc
Confidence            4456666677777777777663 33 3666777777777777776 445444555667777777777764 333336777


Q ss_pred             CcEEEccCCcccccCc--hhhhcCCCCcEEECcCCccccCCch----------hccCCcCCCEEe
Q 047035          588 IMHLYLQNNALSGQIP--STLFRSTELLTLDLRDNKFFGRIPD----------QINNHSELRVLL  640 (783)
Q Consensus       588 L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~  640 (783)
                      |+.|++++|+++. ++  ..+..+++|+.|++++|++....+.          .+..+|+|+.||
T Consensus       117 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888888887763 33  3567778888888888877554332          256688888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.2e-11  Score=107.23  Aligned_cols=102  Identities=16%  Similarity=0.107  Sum_probs=42.5

Q ss_pred             EEEccCCcccccCCCCcCCCCCCcEEECCCCc-ccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035          519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH-LEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN  596 (783)
Q Consensus       519 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n  596 (783)
                      .++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++...|..| .+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444433 233334444444444444332 433333344444444444444444443333333 4444444444444


Q ss_pred             cccccCchhhhcCCCCcEEECcCCcc
Q 047035          597 ALSGQIPSTLFRSTELLTLDLRDNKF  622 (783)
Q Consensus       597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l  622 (783)
                      +++ .+|........|+.|+|++|.+
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCc-ccChhhhccccccccccCCCcc
Confidence            444 2222222223444444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-10  Score=103.87  Aligned_cols=106  Identities=23%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             CCCEEeCCCccccccccccc-CcCCCcEEEccCC-cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035          564 QLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN-ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL  641 (783)
Q Consensus       564 ~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  641 (783)
                      ..+.++.+++.+.. .|..+ .+++|++|++++| .++...+..|.++++|+.|++++|+++...|..|..+++|+.|+|
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34455666655542 34444 6667777777655 366555667888888888888888888777888888888889999


Q ss_pred             cCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035          642 RGNYLQGQIPIALCQLQKLGILDLSHNKLN  671 (783)
Q Consensus       642 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  671 (783)
                      ++|+++ .+|........|+.|+|++|++.
T Consensus        88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCc-ccChhhhccccccccccCCCccc
Confidence            999888 45544444457999999999985

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=9.4e-08  Score=86.03  Aligned_cols=43  Identities=23%  Similarity=0.233  Sum_probs=18.5

Q ss_pred             hhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035          606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG  648 (783)
Q Consensus       606 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  648 (783)
                      +..+++|+.|+|++|++...-+-.......|+.|++++|.+.+
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            4444555555555555433222122222344555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.2e-07  Score=82.39  Aligned_cols=109  Identities=22%  Similarity=0.231  Sum_probs=73.0

Q ss_pred             CCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccC--CchhccCCcCCCEEeC
Q 047035          564 QLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR--IPDQINNHSELRVLLL  641 (783)
Q Consensus       564 ~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L  641 (783)
                      ..+.|++++++..   +....+..+..++..++.. ..++..+..++.|++|+|++|+++..  ++..+..+++|+.|+|
T Consensus        23 ~~~~Ldls~l~~~---~~l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          23 SQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SSCCBCCCCCSSC---TTTTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hhCeeecccCCCC---chhhhccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            3455666554432   1111223333333334333 24555667899999999999999864  3456788999999999


Q ss_pred             cCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035          642 RGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS  676 (783)
Q Consensus       642 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  676 (783)
                      ++|.++...+-.......|+.|++++|++++....
T Consensus        99 s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          99 SGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             ccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            99999965443445566899999999999876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=5.9e-06  Score=74.27  Aligned_cols=94  Identities=14%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             CCCCCCEEeCCCC-CCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCC---
Q 047035           72 PFQELQILDLSGN-YFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS----VLPYLNTLTSLTTLNLYYNRIGGLNP---  143 (783)
Q Consensus        72 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p---  143 (783)
                      +.+.|++|+|+++ .++......++.++...++|++|+|++|.+...    +...+...+.|++|+|++|.+++...   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3467777777763 343222212334566667777777777776532    22334455677777777776654211   


Q ss_pred             chhccCCCCCCeEeCCCCCCCC
Q 047035          144 SQGLANLRNLKALNLSWNGISS  165 (783)
Q Consensus       144 ~~~l~~l~~L~~L~L~~n~l~~  165 (783)
                      ..++...+.|++|++++|.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCC
Confidence            1234455556666666555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=3.5e-05  Score=68.98  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             CCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeCcCCcccc-------cC
Q 047035          586 SSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGNYLQG-------QI  650 (783)
Q Consensus       586 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~-------~~  650 (783)
                      +.|++|+|++|.+..    .+...+...+.|+.|+|++|.+...    +-..+...++|+.|++++|.+..       .+
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            444455555544431    2233444556677777777766543    22234556677777777765432       13


Q ss_pred             CcchhCCCCCCEEecCCCcC
Q 047035          651 PIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l  670 (783)
                      ...+..-++|+.|+++.+..
T Consensus       124 ~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         124 MMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCccEeeCcCCCc
Confidence            34456677888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=8.8e-05  Score=66.26  Aligned_cols=68  Identities=16%  Similarity=0.101  Sum_probs=35.7

Q ss_pred             CCCCCCEEeCCC-CCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCC
Q 047035           72 PFQELQILDLSG-NYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS----VLPYLNTLTSLTTLNLYYNRIG  139 (783)
Q Consensus        72 ~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~  139 (783)
                      +.+.|++|+|++ +.++......++.++...++|++|+|++|.++..    +...+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            446677777765 3343322222334455566666666666666432    2223344556666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.86  E-value=0.00029  Score=62.69  Aligned_cols=86  Identities=13%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             cCCCcEEEccCCccccc----CchhhhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeC--cCCcccc----cC
Q 047035          585 LSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLL--RGNYLQG----QI  650 (783)
Q Consensus       585 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~----~~  650 (783)
                      .+.|++|++++|.+...    +-..+...++++.+++++|.+...    +-+.+...++|+.++|  ++|.+..    .+
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            44555555555554322    223445567777777777776543    2234556677776544  4566643    23


Q ss_pred             CcchhCCCCCCEEecCCCcC
Q 047035          651 PIALCQLQKLGILDLSHNKL  670 (783)
Q Consensus       651 p~~l~~l~~L~~L~ls~N~l  670 (783)
                      ...+...+.|+.|+++.++.
T Consensus       125 a~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCcCEEeCcCCCC
Confidence            44566788888888877754