Citrus Sinensis ID: 047036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
Protein Sequence
MGTSQSREDYISDSDYEESESGESSQYDDAQETSSSSSQSGTKTLNSLDEVDAKLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEccccccccEEEEEcccEEEEEEEEcccccccccccccccccccccccEEEEEEEccEEEcccccccccEEcccccEEEEEEccEEEEEEccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEcccccEEEEcccEEEEEEcccccccccccEEEEccccccccccccccccccccccccEEEEcccccccccccccEEEEcccccEEEEEEEccccccccEEEEccccccccccccccEEEEEEccccEEEEcccccccEEEEEccccccccccccccccccccEEEEEEccccEEEEEcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccEEEEEEEEEEcccccccccccccccccccccEEEEEcccHHHHccccccccEEEEEEEcccccEEEEEEEEEccEEEEEEHHHHHccccccHHcccccccEEEEEEEEcccEEEEccEEcccccccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHccccccccccccccccEEEEEEEcccccccEEEEccHHcHHHHEEcccccccccccccccccccccccccEEEEEEcccEEEEccHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccHHHHHHHcccccccEEEEEEcccEEEEEcccEEEEEEccccccccEEEEEEEccccccccccccccEEEEcccccEEEEccccccccccccEEEEEccccEEEEEEEEccccccEEEEEcccccccccccccccEEEEEccccEEEEcccccccEEEEEEEcccccEEEEcccEEEccccEEEEEEccccEEEEEcccccEEEEccccHHccccccccccccEEEEEEcccccEEEEEccEEEEEEEEEEcccccccccccccccccccccccEEEEcHHHHHHHcccccccccEEEEEccccccEEEEEEEcccEEEEEEHHHHHcccccHHHHHccccccccEEEEEcccHHcHccccHHcccccccccccEEEEccccccHEEccccc
Coil and Loop (DISEMBL)
mgtsqsredyisdsdyeesesgessqyddaqetsssssqsgtktlnSLDEVDAKLKSLKlkystpqspnvknpvKLYLhiggntpkakwvisdkltSYSFVRtnkinggndsdddeeesekgvlgdgFWVLKVGSKVRAKVSTEMQLKmfgdqrridFVDKGVWALKFFSDSEYRKFVTEFQDRLFENvyglkateenkMKVYGKEfigwvkpevaddsmwedaddgldktpesvtpvrgnRDLLEEFEELAnggvqsltlgaldnsflvsdlgLQVYRnynrgihnkgvsvrfdggsskigsnstpkkALLMRgetnmmlmsplkdgkpqapgvqqldietgKIVTEwkfekdgtditmrditndtkssqldpsestflglddnrlcqwdmrdrsgivqnmvkgdspvlhwtqghqfsrgtnfqcfastgdgsivvGSLDGkirlysktsmrqaktafpglgspithvdvtydgkwilgTTDTYLILICTLfsdkdgktktgfsgrmgnkipaprllkltpldshlagtdnkihgghfswvtengkQERHLVATVGKFSVIWDFQQVKNSAhecyrnqqglkscycykivlkdesivesrfmhdkfavtdspeaplvvatpmkvssislsgrr
Flexible Loop (DISEMBL)
mgtsqsredyisdsdyeesesgessqyddaqetsssssqsgtktlnSLDEVDAKLKSLKlkystpqspnvknpVKLYLHIGGNTPKAKWVISDKLTSYSFVRtnkinggndsdddeeesekgvlgdgfwvlKVGSKVRAKVSTemqlkmfgdqrridFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVyglkateenkmkvYGKEFIGWVKPEVADDSMWEDADdgldktpesvtpvrGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNrgihnkgvsvrfdggsskigsnstpkkaLLMRGETNMMLMSPLKDGKPQAPGVQQldietgkivtewkfekdgtditmrditndtkssqldpsestflglddnrLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKtafpglgspithvDVTYDGKWILGTTDTYLILICTLFSDKDGKTktgfsgrmgnkipaprlLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAvtdspeaplvvatpmkvssislsgrr
Low Complexity Region (SEG)
MGTSQsredyisdsdyeesesgessqyddAQETsssssqsGTKTLNSLDEVDAKLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNdsdddeeeseKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR
Disordered region (IsUnstruct)
************************************************************************PVKLYLHIGGNTPKAKWVISDKLTSYSFVRTN******************VLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVAD**************************LLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRF*******************************************LDIETGKIVTEWKFEKDGTDI********************FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKD**************IPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVT************************
Disordered Region (DISOPRED)
*******************************************************************************IGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVA*******************************************TLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG*SPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKT**************LLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSI******
Disordered Region (DISEMBL)
********************************************LNSLDEVDAKLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGG*************VLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKV*********
Disordered Region (DISPRO)
**********************************************SLDEVDAKLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTN********************GDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKP**************************************ANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTSQSREDYISDSDYEESESGESSQYDDAQETSSSSSQSGTKTLNSLDEVDAKLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	634	2.2.26 [Sep-21-2011]
P40781	501	Protein CYPRO4 OS=Cynara	N/A	no	0.761	0.964	0.788	0.0
Q1MTR3	801	Vacuolar import and degra	yes	no	0.440	0.348	0.293	2e-25
Q555V7	938	VID27-like protein OS=Dic	yes	no	0.454	0.307	0.275	3e-25
P40157	782	Vacuolar import and degra	yes	no	0.498	0.404	0.262	4e-15

>sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/492 (78%), Positives = 433/492 (88%), Gaps = 9/492 (1%)

Query: 149 MFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFI 208
           MFGDQRR+DFVD GVWALKF  D +YR+FVT FQ  LFENVYGLKA++ENK+KVYGK+FI
Sbjct: 1   MFGDQRRVDFVDSGVWALKFMRDEDYREFVTRFQSCLFENVYGLKASDENKVKVYGKDFI 60

Query: 209 GWVKPEVADDSMWEDADDGLDKTPESVTPVRGNRDLLEEFEELA-NGGVQSLTLGALDNS 267
           GWVKP+VADDSMWE  DD L ++P  +TPVRG+ DLLEEFEE A +GG+QS+ LGALDNS
Sbjct: 61  GWVKPDVADDSMWEKDDDELWRSPSKMTPVRGSNDLLEEFEEAASDGGIQSVALGALDNS 120

Query: 268 FLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGS-------NSTPKKALLMRGETNMM 320
           FLV+D G+QV +N++ GIH KGV V+FD G  ++G        N TP+KALLMRGETNM+
Sbjct: 121 FLVNDSGVQVVKNFSHGIHGKGVYVKFDNGGKRVGGSSSGGYSNLTPQKALLMRGETNML 180

Query: 321 LMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380
           LMSP K GKP + GV QLDIETGKIVTEWKFEKDGTDITMRDITNDTK SQLDPSESTFL
Sbjct: 181 LMSPAKAGKPHSTGVNQLDIETGKIVTEWKFEKDGTDITMRDITNDTKGSQLDPSESTFL 240

Query: 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL 440
           GLDDNRL QWDMRDR G+VQN+   DSPVLHWTQGHQFSRGTNFQ FA+TGDGSIVVGSL
Sbjct: 241 GLDDNRLSQWDMRDRRGMVQNIAHSDSPVLHWTQGHQFSRGTNFQSFATTGDGSIVVGSL 300

Query: 441 DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKT 500
           DGKIRLYS TSMR AKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC+LF+DKDGKT
Sbjct: 301 DGKIRLYSTTSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICSLFTDKDGKT 360

Query: 501 KTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFS 560
           KTGFSGRMGNKIPAPRLLKLTP+DSH AG +NK HGG FSWVTE+GKQERHLVATVGKFS
Sbjct: 361 KTGFSGRMGNKIPAPRLLKLTPVDSHTAGVNNKFHGGRFSWVTESGKQERHLVATVGKFS 420

Query: 561 VIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF-AVTDSPEAPLVV 619
           VIWDFQ+VKNS HECYRNQ+GLKSCYCYK++ KDESI+ES FM+DK+ AV DSPEAPLV+
Sbjct: 421 VIWDFQRVKNSGHECYRNQEGLKSCYCYKLMTKDESIIESLFMNDKYAAVGDSPEAPLVM 480

Query: 620 ATPMKVSSISLS 631
           ATP K++S S+S
Sbjct: 481 ATPKKITSFSMS 492

Cynara cardunculus (taxid: 4265)

>sp|Q1MTR3|VID27_SCHPO Vacuolar import and degradation protein 27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vid27 PE=1 SV=1

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 164/327 (50%), Gaps = 48/327 (14%)

Query: 265 DNSFLVSDLGLQVYRNYNRGIHNKGVSVR--FDGGSSKIGSNSTPKKALLMRGETNMMLM 322
           D S++V +  + V+++    +  KG+  +   +  S+  G +  P K +L   +++++  
Sbjct: 446 DRSYVVRNNKIGVFKH----VDEKGLKFQTALNNLSTPKGKSLRPSKLMLHNQDSSILFQ 501

Query: 323 SPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL 382
           +   +  P +  +  +DIE GKIV EWK   D   +T    T D K +Q+  +E T +GL
Sbjct: 502 T---ENAPHS--LYHMDIEYGKIVDEWKVHDDVPLVTF---TPDNKFAQM-TAEQTLIGL 552

Query: 383 DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDG 442
            +N + + D R         V+G+  V    Q  Q++   +F   A+T +G I V S  G
Sbjct: 553 SNNSIFRIDPR---------VEGNKLVAE--QFKQYATKNDFSSAATTENGYIAVASNKG 601

Query: 443 KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKT 502
            IRL+ +  +  AKTA P LG  I  VDVT  G ++L T  TY++LI       D + K 
Sbjct: 602 DIRLFDRIGV-NAKTALPALGEAIIGVDVTASGDFVLATCKTYILLI-------DTRIKE 653

Query: 503 G-FSGRMG-------NKIPAPRLLKLTPLDSHLAGTDNKIHGG-HFSWVTEN---GKQER 550
           G ++GR+G       +K P P+ L+L+P   H+A    ++ GG  F+    N     +E 
Sbjct: 654 GRYAGRLGFERNFAKDKKPKPKRLQLSP--QHIAMMQRELKGGASFTPAKFNTGIDAKET 711

Query: 551 HLVATVGKFSVIWDFQQVKNSAHECYR 577
            +V+++G F + W+  +VK    + Y+
Sbjct: 712 TIVSSIGPFLISWNLDRVKRGFTDSYK 738

Has a role in the negative regulation of gluconeogenesis. Required for vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q555V7|VID27_DICDI VID27-like protein OS=Dictyostelium discoideum GN=DDB_G0274813 PE=3 SV=1

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 61/349 (17%)

Query: 258 SLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKI----GSNSTPKKALLM 313
           SL +G  D S++V    + V+   + GI       +F+   + I    G N +PKK +L 
Sbjct: 593 SLIVGYKDKSYVVRGSTIGVFNTDDDGI-------KFNTAITNIKQKDGKNFSPKKMMLQ 645

Query: 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRD---ITNDTKSS 370
           + +  +++++P K        V ++D+    IV EW       D+  R+   +TN   S 
Sbjct: 646 QQDQTLLMLNPEKKS-----NVYKMDLNRPDIVEEW-------DMNWRNQPTLTNSVVSQ 693

Query: 371 QLDPSEST---FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCF 427
             +  E+    F+G + N +   D R+    V     G S     T            C 
Sbjct: 694 YKNDDETNNQLFVGYNGNNMFLVDPRESKNKVTVKFHGGSNPKSVTT-----------CA 742

Query: 428 ASTGDGSIVVGSLDGKIRLYSKTSMRQ----------------AKTAFPGLGSPITHVDV 471
           A+TG G I  G+  G+I+L+SKT   Q                ++T  PG+G PI  +DV
Sbjct: 743 ATTGSGQIAFGTSKGEIKLFSKTQFDQNKRSVTSSDPLGAIARSRTTLPGIGDPIVGIDV 802

Query: 472 TYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD 531
           T DGKWI+ T   Y+++I    S KDG   +GF  R+G + P+P+ L L P D    G  
Sbjct: 803 TKDGKWIVATCKQYIMVIPA--SLKDG--SSGFEDRLGARRPSPKRLILKPQDIKRMGGV 858

Query: 532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQ 580
                  F+ V +  + E  ++ + G F + W+F+++K +  + Y+ +Q
Sbjct: 859 VNFTPAKFNIVGDE-QSETSILTSTGSFLITWNFRKIKQNILDVYQIKQ 906

Dictyostelium discoideum (taxid: 44689)

>sp|P40157|VID27_YEAST Vacuolar import and degradation protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VID27 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 160/374 (42%), Gaps = 58/374 (15%)

Query: 246 EEFEE---LANGGVQSLTLGALDN-SFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKI 301
           E FEE     + G  SLT+   +N S++  D  + V++       ++  S+ F      I
Sbjct: 407 EAFEEPRRATSKGNSSLTVAFRNNRSYVTRDNRIGVFKT-----DDEDDSLEFVAAIKNI 461

Query: 302 ----GSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTD 357
               G +  P K +L   + N++L     + K     + ++DIE GK++ EW       D
Sbjct: 462 SNLGGKSIDPHKPMLYMEDRNLILTDGENENK-----LYKMDIERGKVIEEW----STGD 512

Query: 358 ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ 417
             +       K  Q+ P E T +G+    + + D R      +N +  D       +   
Sbjct: 513 KNVVQYGPTKKFDQMTP-EQTIVGVSQKGVFKIDPRING---KNKIAVD-------ESKD 561

Query: 418 FSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW 477
           +    NF    +T  G I +GS  G I+LY +  +R AKTA P LG  I  +  + DGKW
Sbjct: 562 YVGKYNFSSIGTTESGYIAIGSEKGDIKLYDRLGIR-AKTAIPSLGQAIKFITTSADGKW 620

Query: 478 ILGTTDTYLILICTLFSDKDGKTKTGFSGRMG--NKIPAPR-----LLKLTPLDSH--LA 528
           +L T ++ L+L+      KDGK     +G +G     PA       +LK+ P  S   L 
Sbjct: 621 LLATCESTLLLMD--LKIKDGKN----AGNIGFLKSFPASENVKTYVLKIRPEHSASILT 674

Query: 529 GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCY 588
            T   I      + T  G+QE+ +V + G +++ W  + +         NQ G  + Y Y
Sbjct: 675 YTKKPIRFTKAYFNTGIGQQEQTIVTSTGPYAISWSLKGI--------LNQDG-SNNYPY 725

Query: 589 KIVLKDESIVESRF 602
           +I   +  +V   F
Sbjct: 726 RIRRYNADVVADNF 739

Has a role in the negative regulation of gluconeogenesis. Required for vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
255555465	639	Protein CYPRO4, putative [Ricinus commun	0.985	0.978	0.756	0.0
224103599	635	predicted protein [Populus trichocarpa]	0.979	0.977	0.745	0.0
37223342	639	DEM2 [Solanum lycopersicum]	0.987	0.979	0.732	0.0
350534490	639	Dem2 protein [Solanum lycopersicum] gi|3	0.987	0.979	0.729	0.0
449445874	653	PREDICTED: protein CYPRO4-like [Cucumis	0.996	0.967	0.734	0.0
359475193	634	PREDICTED: protein CYPRO4-like [Vitis vi	0.987	0.987	0.749	0.0
357475399	627	DEM2 [Medicago truncatula] gi|355509040|	0.962	0.972	0.733	0.0
356521504	607	PREDICTED: protein CYPRO4-like [Glycine	0.946	0.988	0.744	0.0
15230321	648	Vacuolar import/degradation, Vid27-relat	0.988	0.967	0.732	0.0
224137482	645	predicted protein [Populus trichocarpa]	0.995	0.978	0.711	0.0

>gi|255555465|ref|XP_002518769.1| Protein CYPRO4, putative [Ricinus communis] gi|223542150|gb|EEF43694.1| Protein CYPRO4, putative [Ricinus communis]

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/645 (75%), Positives = 551/645 (85%), Gaps = 20/645 (3%)

Query: 1   MGTSQSREDY-ISDSDYEESESGESS--QYDDA---QETSSSSSQSGTKTLNSLDEVDAK 54
           MGT+QSRE   ++DS+ E     E    QYDDA   QET  S++ S   +  +L+E+D K
Sbjct: 1   MGTAQSREGQDLTDSESEYQSEEEEEEGQYDDAVDRQETPQSTT-STPSSRKALEEIDTK 59

Query: 55  LKSLKLKYSTPQSPNVKNP-----VKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGG 109
           LKSLKLKY +  + N KNP     VKLYLHIGGNTP AKWV+SDKLTSY+F+++      
Sbjct: 60  LKSLKLKYPSSANSNSKNPLPNNPVKLYLHIGGNTPNAKWVLSDKLTSYNFIKS-----C 114

Query: 110 NDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFF 169
           N    D ++ +     D FWVLKV SKVRAKVSTE+QLKMFGDQ+R+DFV+KGVWALKFF
Sbjct: 115 NADGPDSDDDDDDQDNDSFWVLKVASKVRAKVSTEIQLKMFGDQKRVDFVNKGVWALKFF 174

Query: 170 SDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLD 229
           +D EYRKF+T+FQD +FENVYGL+ATEENK+K+YGK+FIGWVKPE+ADD+MWEDA D  D
Sbjct: 175 TDEEYRKFITQFQDCIFENVYGLEATEENKIKIYGKDFIGWVKPEIADDTMWEDAMD--D 232

Query: 230 KTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKG 289
                 TP+R N+DL+EEFEE ANGGVQSLTLGALDNSFLV+DLG+QV+RNY++GIH KG
Sbjct: 233 HESAKTTPLRVNQDLMEEFEEAANGGVQSLTLGALDNSFLVNDLGVQVFRNYHKGIHGKG 292

Query: 290 VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW 349
           + V FD  S      STPKKA+LMR ETNMMLMSPLK+GKP + G++QLDIETGKIV +W
Sbjct: 293 ICVNFDKTSGGSLMQSTPKKAMLMRAETNMMLMSPLKEGKPHSSGIKQLDIETGKIVAQW 352

Query: 350 KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409
           KF KDGT+ITM+DITNDTK SQLDPSESTFLGLDDNRLCQWDMRD+ G+VQ+ +  DSPV
Sbjct: 353 KFGKDGTEITMKDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDKRGVVQS-IGDDSPV 411

Query: 410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV 469
           L+W+QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYS+TSMRQAKTAFPGLGSPITHV
Sbjct: 412 LNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSRTSMRQAKTAFPGLGSPITHV 471

Query: 470 DVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAG 529
           DVTYDGKWILGTTDTYLILICTLF+DKDGKTKTGFSGRMGNKIPAPRLLKL PLDSHLAG
Sbjct: 472 DVTYDGKWILGTTDTYLILICTLFTDKDGKTKTGFSGRMGNKIPAPRLLKLIPLDSHLAG 531

Query: 530 TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK 589
            +NK HGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK
Sbjct: 532 VNNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK 591

Query: 590 IVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           IVLKDESIVESRFMHD +AV+ SPEAPLVVATPMKVSSISLSG+R
Sbjct: 592 IVLKDESIVESRFMHDNYAVSGSPEAPLVVATPMKVSSISLSGKR 636

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103599|ref|XP_002313117.1| predicted protein [Populus trichocarpa] gi|222849525|gb|EEE87072.1| predicted protein [Populus trichocarpa]

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/645 (74%), Positives = 543/645 (84%), Gaps = 24/645 (3%)

Query: 1   MGTSQSRE-DYISDSDYEESESGESS-------QYDDAQETSSSSSQSGTKTLNSLDEVD 52
           MGTSQSRE    SD++ E     E          YD  +   +  + S +K   +LDE+D
Sbjct: 1   MGTSQSREGQEFSDTESEYQSEEEEVEEEEEEFHYDAVERQETPQATSSSK--KTLDEID 58

Query: 53  AKLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDS 112
           +KLKSLKLKY +  S    N VKLYLHIGG++P AKW++SDKLTSY F++TN  +  +  
Sbjct: 59  SKLKSLKLKYPS-NSQTTLNTVKLYLHIGGDSPNAKWILSDKLTSYKFIKTNGPDDSDSD 117

Query: 113 DDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDS 172
            DD+E       G+ FWVLKVGSKV+A++STEMQLKMFGDQRR+DFV+ GVWAL+FFSD 
Sbjct: 118 HDDKEGD-----GNSFWVLKVGSKVKARISTEMQLKMFGDQRRVDFVNNGVWALRFFSDE 172

Query: 173 EYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTP 232
           EYRKF++ FQD LFENV+GL ATEENK+K+Y KEFIGW+KPE+ADDSMWEDA        
Sbjct: 173 EYRKFLSLFQDCLFENVHGLNATEENKLKIYSKEFIGWLKPEIADDSMWEDA-----VEE 227

Query: 233 ESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSV 292
           +   PVR N+DLLEEFEE ANGGVQSL+LGALDNSFLV+DLG+QV RNYN+GI+ KG+ V
Sbjct: 228 KEEEPVRVNQDLLEEFEEAANGGVQSLSLGALDNSFLVNDLGVQVLRNYNKGIYGKGICV 287

Query: 293 RFDGGSSKIGS--NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK 350
           +FD   S+  S   STPKKA+LMR ETNMMLMSPLK+GKP + G++ LDIETGKIVTEWK
Sbjct: 288 KFDSNRSEGSSLEQSTPKKAMLMRAETNMMLMSPLKEGKPHSTGIKHLDIETGKIVTEWK 347

Query: 351 FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG-DSPV 409
           FEKDGT+ITMRDITNDTK SQLDPSESTFLGLDDNRLCQWDMRDR GIVQ++VKG DSPV
Sbjct: 348 FEKDGTEITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRRGIVQDIVKGGDSPV 407

Query: 410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV 469
           L+W+QGHQFSRGTNFQCFASTGDGSIVVGS DGKIRLYSKTSMRQAKTAFPGLGSPITHV
Sbjct: 408 LNWSQGHQFSRGTNFQCFASTGDGSIVVGSRDGKIRLYSKTSMRQAKTAFPGLGSPITHV 467

Query: 470 DVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAG 529
           DVTYDGKW+LGTTDTYLILICTLF+DKDGKTKTGF GRMGNKIPAPRLLKLTPLDSHLAG
Sbjct: 468 DVTYDGKWVLGTTDTYLILICTLFTDKDGKTKTGFGGRMGNKIPAPRLLKLTPLDSHLAG 527

Query: 530 TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK 589
            +NK HGGHFSWVTENGKQERHLV TVGKFSVIWDFQ+VKNS H+CYRNQ GLKSCYCYK
Sbjct: 528 ANNKFHGGHFSWVTENGKQERHLVVTVGKFSVIWDFQRVKNSGHDCYRNQHGLKSCYCYK 587

Query: 590 IVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           IVLKDESIVESRFMH+ +AV+DSPEAPLVVATPMKVSSISLSG+R
Sbjct: 588 IVLKDESIVESRFMHENYAVSDSPEAPLVVATPMKVSSISLSGKR 632

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37223342|gb|AAQ90244.1| DEM2 [Solanum lycopersicum]

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/646 (73%), Positives = 544/646 (84%), Gaps = 20/646 (3%)

Query: 1   MGTSQSRE--DYISDSDYEESESGESS----QYDDAQETSSSSSQSGTKTLNSLDEVDAK 54
           MG S SRE  +   +SDYE+ E    +    QY+DA +  +S         N LDE+D+K
Sbjct: 1   MGASHSREGLELSDESDYEDEEGSSRTESEEQYEDAADDHASMRTPQVSNRN-LDELDSK 59

Query: 55  LKSLKLKYSTPQSP-NVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSD 113
           LK+LKLKY +P +P N++N VKLYLH+GGNTPKAKW+IS KLT+Y FV+T KI G  D +
Sbjct: 60  LKALKLKYGSPVTPTNLRNAVKLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGG--DDE 117

Query: 114 DDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSE 173
           DD   S  G   +GFWVLKVG K++ +VST+MQLKMFGDQRRIDFVD GVWALKFF D E
Sbjct: 118 DDYGSSSGG--DEGFWVLKVGKKIKVRVSTDMQLKMFGDQRRIDFVDNGVWALKFFVDDE 175

Query: 174 YRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGL----D 229
           YR F+T+FQD LFENVYG++ATE NK+K+YGKEFIGW+KPE +DD+MWEDAD G+     
Sbjct: 176 YRNFITKFQDCLFENVYGMEATEANKVKIYGKEFIGWLKPEESDDAMWEDADSGVWKGSG 235

Query: 230 KTPESVTPVRGNRDLLEEFEELANGG-VQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNK 288
           K+P  +TP R  +DLLEEFEE A GG +QSL LGALDNSFLV+D G+QV +N++ GIH K
Sbjct: 236 KSP--MTPARDRQDLLEEFEEAATGGGIQSLALGALDNSFLVNDSGVQVVKNFSHGIHGK 293

Query: 289 GVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE 348
           GV V+FD    K    STPKKALLMRGETNMMLMSP K+GKP++ G+ QLDIETGK+VTE
Sbjct: 294 GVYVKFDE-KDKWSGGSTPKKALLMRGETNMMLMSPFKEGKPRSTGLHQLDIETGKVVTE 352

Query: 349 WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408
           WKFEKDGTDITM+DITNDTK SQLDPSEST LGLDDNRLCQWDMRD+ GIVQ +    SP
Sbjct: 353 WKFEKDGTDITMKDITNDTKGSQLDPSESTLLGLDDNRLCQWDMRDKKGIVQTLANTSSP 412

Query: 409 VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 468
           VL+WTQGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH
Sbjct: 413 VLNWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 472

Query: 469 VDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA 528
           VDVTYDGKWILGTTDTYLILICTLF+DK GKTKTGF+GRMGNKIPAPRLLKLTP+D+H+A
Sbjct: 473 VDVTYDGKWILGTTDTYLILICTLFTDKAGKTKTGFTGRMGNKIPAPRLLKLTPVDAHIA 532

Query: 529 GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCY 588
           G +N+ HGGHFSWVTE+GKQERHLVA VGKFSVIW+FQQVK+SAH CY+NQQGLKSCYCY
Sbjct: 533 GANNEFHGGHFSWVTESGKQERHLVAAVGKFSVIWNFQQVKDSAHRCYQNQQGLKSCYCY 592

Query: 589 KIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           KIV KDESI+ESRFMHDK+AV+DSPEAPLVVATPMKV+SIS+SG+R
Sbjct: 593 KIVPKDESIIESRFMHDKYAVSDSPEAPLVVATPMKVTSISMSGKR 638

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534490|ref|NP_001234399.1| Dem2 protein [Solanum lycopersicum] gi|37223344|gb|AAQ90245.1| DEM2 [Solanum lycopersicum]

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/646 (72%), Positives = 544/646 (84%), Gaps = 20/646 (3%)

Query: 1   MGTSQSRE--DYISDSDYEESESGESS----QYDDAQETSSSSSQSGTKTLNSLDEVDAK 54
           MG S SRE  +   +SDYE+ E    +    QY+DA +  +S         N LDE+D+K
Sbjct: 1   MGASHSREGLELSDESDYEDEEGSSRTESEEQYEDAADDHASMRTPQVSNRN-LDELDSK 59

Query: 55  LKSLKLKYSTPQSP-NVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSD 113
           LK+LKLKY +P +P N++N VKLYLH+GGNTPKAKW+IS KLT+Y FV+T KI G  D +
Sbjct: 60  LKALKLKYGSPVTPTNLRNAVKLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGG--DDE 117

Query: 114 DDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSE 173
           DD   S  G   +GFWVLKVG K++ +VST+MQLKMFGDQRR+DFVD GVWALKFF D E
Sbjct: 118 DDYGSSSGG--DEGFWVLKVGKKIKVRVSTDMQLKMFGDQRRVDFVDNGVWALKFFVDDE 175

Query: 174 YRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGL----D 229
           YR F+T+FQD LFENVYG++ATE NK+K+YGKEFIGW+KPE +DD+MWEDAD G+     
Sbjct: 176 YRNFITKFQDCLFENVYGMEATEANKVKIYGKEFIGWLKPEESDDAMWEDADSGVWKGSG 235

Query: 230 KTPESVTPVRGNRDLLEEFEELANGG-VQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNK 288
           K+P  +TP R  +DLLEEFEE A GG +QSL LGALDNSFLV+D G+QV +N++ GIH K
Sbjct: 236 KSP--MTPARDRQDLLEEFEEAATGGGIQSLALGALDNSFLVNDSGVQVVKNFSHGIHGK 293

Query: 289 GVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE 348
           GV V+FD    K    STPKKALLMRGETNMMLMSP K+GKP++ G+ QLDIETGK+VTE
Sbjct: 294 GVYVKFDE-KDKWSGGSTPKKALLMRGETNMMLMSPFKEGKPRSTGLHQLDIETGKVVTE 352

Query: 349 WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408
           WKFEK+GTDITM+DITNDTK SQLDPSEST LGLDDNRLCQWDMRD+ GIVQ +    SP
Sbjct: 353 WKFEKNGTDITMKDITNDTKGSQLDPSESTLLGLDDNRLCQWDMRDKKGIVQTLANTSSP 412

Query: 409 VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 468
           VL+WTQGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH
Sbjct: 413 VLNWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 472

Query: 469 VDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA 528
           VDVTYDGKWILGTTDTYLILICTLF+DK GKTKTGF+GRMGNKIPAPRLLKLTP+D+H+A
Sbjct: 473 VDVTYDGKWILGTTDTYLILICTLFTDKAGKTKTGFTGRMGNKIPAPRLLKLTPVDAHIA 532

Query: 529 GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCY 588
           G +N+ HGGHFSWVTE+GKQERHLVA VGKFSVIW+FQQVK+SAH CY+NQQGLKSCYCY
Sbjct: 533 GANNEFHGGHFSWVTESGKQERHLVAAVGKFSVIWNFQQVKDSAHRCYQNQQGLKSCYCY 592

Query: 589 KIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           KIV KDESI+ESRFMHDK+AV+DSPEAPLVVATPMKV+SIS+SG+R
Sbjct: 593 KIVPKDESIIESRFMHDKYAVSDSPEAPLVVATPMKVTSISMSGKR 638

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445874|ref|XP_004140697.1| PREDICTED: protein CYPRO4-like [Cucumis sativus] gi|449497632|ref|XP_004160456.1| PREDICTED: protein CYPRO4-like [Cucumis sativus]

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/655 (73%), Positives = 550/655 (83%), Gaps = 23/655 (3%)

Query: 1   MGTSQSREDY-ISDSDYEESESGESSQYDDA--------QETSSSSSQSGTKTLNSLDEV 51
           MG+ QSRED  +SDSD  + E  +    ++         +  S S++   T T +++D+V
Sbjct: 1   MGSGQSREDVELSDSDDYKEEEEDDDDDEEEYEDADKELKPHSISTTAKSTGTSSAIDDV 60

Query: 52  DAKLKSLKLKY-------STPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTN 104
           DAKLK+LKLKY       S  Q+PN KN VKLYLHIGGNTP+AKW++S+K T Y F++T 
Sbjct: 61  DAKLKALKLKYGSSSSSPSPSQTPNSKNAVKLYLHIGGNTPRAKWIVSEKFTFYVFLKTA 120

Query: 105 KINGGNDSDDDEEES---EKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDK 161
            ++G ND D++E++         G   WVLKVG+KVRA VSTEMQLKMFG+QRR+DFV+K
Sbjct: 121 NVDGHNDDDEEEDDDEGHNANSSGGRRWVLKVGAKVRALVSTEMQLKMFGEQRRVDFVNK 180

Query: 162 GVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMW 221
           GVWALKF S  +YR FVTEFQD LFENVYGL+AT+ENK+K+YGKEFIGW+KPEVADDS+W
Sbjct: 181 GVWALKFPSGEQYRNFVTEFQDCLFENVYGLQATDENKVKIYGKEFIGWLKPEVADDSIW 240

Query: 222 EDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNY 281
           E+AD   +K+P S   VR  +DL+EEFEE ANGGVQSLTLGALDNSFLV+D G+QVYRN 
Sbjct: 241 ENADIDFEKSPSS--SVRTKQDLIEEFEEAANGGVQSLTLGALDNSFLVNDSGVQVYRNL 298

Query: 282 NRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE 341
           + GIH KGVS++F  G S     STPKK LL++ ETNM+LMSPLK+GKP   G++QLDIE
Sbjct: 299 SHGIHGKGVSLKFGAGHSPNIGRSTPKKGLLVKAETNMLLMSPLKEGKPHTTGLEQLDIE 358

Query: 342 TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN 401
           TGKIVTEWKFEKDGTDITMRDITNDTK SQLDPSESTFLGLDDNRLCQWDMRDR G+VQN
Sbjct: 359 TGKIVTEWKFEKDGTDITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRRGMVQN 418

Query: 402 MVKG--DSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF 459
           +     +S VL+W QGHQFSRGTNFQCFA+TGDGSIVVGS+DGKIRLYSKTSMRQAKTAF
Sbjct: 419 ISGSADNSMVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSIDGKIRLYSKTSMRQAKTAF 478

Query: 460 PGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLK 519
           PGLGSPITHVDVTYDGKWILGTTD+YLILICTLF+DKDG TKTGFSGRMGN+IPAPRLLK
Sbjct: 479 PGLGSPITHVDVTYDGKWILGTTDSYLILICTLFTDKDGNTKTGFSGRMGNRIPAPRLLK 538

Query: 520 LTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQ 579
           LTPLDSHLAGTDN  HGGHFSWVTE+GKQERHLVATVGKFSVIWDF +VKNS+H+CYRNQ
Sbjct: 539 LTPLDSHLAGTDNTFHGGHFSWVTESGKQERHLVATVGKFSVIWDFHRVKNSSHDCYRNQ 598

Query: 580 QGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           QGLKSCYCYKIVLKDESIVESRFMHDKFAV+DSPEAPLVVATPMKVSSISLSG+R
Sbjct: 599 QGLKSCYCYKIVLKDESIVESRFMHDKFAVSDSPEAPLVVATPMKVSSISLSGKR 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475193|ref|XP_002282160.2| PREDICTED: protein CYPRO4-like [Vitis vinifera]

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/642 (74%), Positives = 546/642 (85%), Gaps = 16/642 (2%)

Query: 1   MGTSQSREDY-ISDSDYEESESGESSQYDDAQETSSSSSQSGTKTLN------SLDEVDA 53
           MG S SRE   +SDS  +E E  E  QYDD  +  +SSS +  KTL       SLDEVDA
Sbjct: 1   MGGSHSREGLDLSDSSDDEVEEEEEEQYDDVSDHPTSSSGTQRKTLTPTSISASLDEVDA 60

Query: 54  KLKSLKLKYSTPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSD 113
           KLK LKLKY + QSP++ N VKLYLHIGGN PKAKW++S+K+  YS V+T K++GG++ +
Sbjct: 61  KLKDLKLKYPS-QSPDLPNAVKLYLHIGGNAPKAKWIVSEKIAFYSLVKTCKMDGGDEDE 119

Query: 114 DDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSE 173
           DD E        + FWVLKVGSK+RA+VSTEMQ+KMFG+QRR+DFV KGVWA+KFF D +
Sbjct: 120 DDGEGGGGSGS-ELFWVLKVGSKIRARVSTEMQIKMFGEQRRVDFVCKGVWAMKFFRDGD 178

Query: 174 YRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPE 233
           YR FVT FQD LFENVYG+KATEENK+KVYGK+FIGW+KPEVADDSMWEDA++G  K+P+
Sbjct: 179 YRSFVTRFQDCLFENVYGVKATEENKVKVYGKDFIGWLKPEVADDSMWEDAEEGPWKSPQ 238

Query: 234 SVTPVRGNRDLLEEFEELA-NGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSV 292
           +    R   DL+EEFEE A NGG+QSL LGALDNSFLV D G+QV +N++ GIH KGV V
Sbjct: 239 A----RSTNDLMEEFEEAATNGGIQSLALGALDNSFLVGDSGVQVVKNFSHGIHGKGVHV 294

Query: 293 RFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE 352
           +FD G  K G+  TPKK LLM+ ETNM+LMSPLKDGKP A G+ QLDIETGKIVTEWKFE
Sbjct: 295 KFDNGGYKGGA--TPKKGLLMKAETNMLLMSPLKDGKPHATGLHQLDIETGKIVTEWKFE 352

Query: 353 KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412
           KDGTDITMRD+TND K SQLDPS+STFLGLDDNRLCQWDMR++ G+VQN+    SPVLHW
Sbjct: 353 KDGTDITMRDVTNDAKGSQLDPSQSTFLGLDDNRLCQWDMREKRGMVQNITTASSPVLHW 412

Query: 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT 472
           TQGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS+TSMRQAKTAFPGLGSPITHVDVT
Sbjct: 413 TQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSRTSMRQAKTAFPGLGSPITHVDVT 472

Query: 473 YDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDN 532
           YDGKWILGT DT+LILICT F+DKDGKTKTGFSGRMGNKIPAPRLLKLTP+DSH+AG DN
Sbjct: 473 YDGKWILGTADTFLILICTSFTDKDGKTKTGFSGRMGNKIPAPRLLKLTPVDSHMAGVDN 532

Query: 533 KIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVL 592
           K HGG FSWVTENGKQERHLVATVGKFSVIW+FQQVKNS+HECY+NQQGLKSCYCYKIVL
Sbjct: 533 KFHGGQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNSSHECYQNQQGLKSCYCYKIVL 592

Query: 593 KDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           KDESIVESRFMHDKFAV+DSPEAPLVVATP+KVSS S+S +R
Sbjct: 593 KDESIVESRFMHDKFAVSDSPEAPLVVATPLKVSSFSISNKR 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475399|ref|XP_003607985.1| DEM2 [Medicago truncatula] gi|355509040|gb|AES90182.1| DEM2 [Medicago truncatula]

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/649 (73%), Positives = 530/649 (81%), Gaps = 39/649 (6%)

Query: 1   MGTSQSREDYI---SDSDYEESESGESSQ---YDDAQETSSSSSQSGTKTLNSLDEVDAK 54
           MGTSQSRE      SDSDY+E E  +      Y DAQ +S S S        +LD+VDAK
Sbjct: 1   MGTSQSREGREFSDSDSDYDEQEPEQEEDQDQYQDAQSSSQSHS-------TNLDDVDAK 53

Query: 55  LKSLKLKYSTP-------QSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKIN 107
           L +LKLKYS+P       ++P  KN VKLYLHIGGNTP AKW++SDK TSY+FV+  +  
Sbjct: 54  LSALKLKYSSPSKSQSETKTPLPKNAVKLYLHIGGNTPNAKWILSDKRTSYAFVKNYEDE 113

Query: 108 GGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALK 167
             ++ +D         +  G W+LKVGSK+RA+VSTE+QLKMFGDQRR+DFV  GVWALK
Sbjct: 114 EEDEQND---------VAQGQWILKVGSKIRARVSTELQLKMFGDQRRVDFVSNGVWALK 164

Query: 168 FFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDA--D 225
           F +D  YRKFVTEFQ+  FENVYGL  TEENK+KVYGKEFIGWVKPE ADDS+WEDA  D
Sbjct: 165 FPTDESYRKFVTEFQNCTFENVYGLSPTEENKVKVYGKEFIGWVKPEAADDSVWEDAVSD 224

Query: 226 DGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGI 285
           DG  K+PE   P R   DL+EEFEE ANGG+Q+LTLGALDNSFL++D G QVYRN++RGI
Sbjct: 225 DGSGKSPE---PYRSRGDLMEEFEEAANGGIQTLTLGALDNSFLLNDAGFQVYRNFDRGI 281

Query: 286 HNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKI 345
             KGV+V++ G   +     TP KALLMR ETNMMLMSP+  G P A  + QLDIETGKI
Sbjct: 282 R-KGVAVKYGGNLQQ----ETPNKALLMRAETNMMLMSPMNSGMPHASKLNQLDIETGKI 336

Query: 346 VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG 405
           VTEWKFEKDG DITMRDITNDTK SQLDPSESTFLGLDDNRLCQWDMRDR GIVQN+   
Sbjct: 337 VTEWKFEKDGADITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATA 396

Query: 406 DSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP 465
           +SPVLHW QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS  SMR AKTAFPGLGSP
Sbjct: 397 NSPVLHWNQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSNKSMRMAKTAFPGLGSP 456

Query: 466 ITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDS 525
           IT VDVT+DGKW+LGTTDTYL+LICTLF+DKDGKTKTGF GRMGN+I APRLLKLTPLDS
Sbjct: 457 ITSVDVTFDGKWVLGTTDTYLVLICTLFTDKDGKTKTGFGGRMGNRIGAPRLLKLTPLDS 516

Query: 526 HLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSC 585
           HLAGT NK HGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSC
Sbjct: 517 HLAGTTNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSC 576

Query: 586 YCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           YCYKIVLKDESI+ESRFMHD +AV+DSPEAPLVVATPMKVSSIS+SG+R
Sbjct: 577 YCYKIVLKDESIIESRFMHDNYAVSDSPEAPLVVATPMKVSSISMSGKR 625

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521504|ref|XP_003529395.1| PREDICTED: protein CYPRO4-like [Glycine max]

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/639 (74%), Positives = 529/639 (82%), Gaps = 39/639 (6%)

Query: 1   MGTSQSREDY-ISDSDYEESESGESSQYDDAQETSSSSSQSGTKTLNSLDEVDAKLKSLK 59
           MGTSQSRE   ++DSD +     E+  Y+DA+ T S+           LD+VDAKLK+LK
Sbjct: 1   MGTSQSREGLEVTDSDSDYENEEETEHYEDAKTTHSTE----------LDDVDAKLKALK 50

Query: 60  LKYSTPQS---PNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDE 116
           LKY TP S   P  +N VKLYLHIGGNTP AKW++SDK TSY+F +          D DE
Sbjct: 51  LKYQTPSSSAKPLPQNAVKLYLHIGGNTPNAKWILSDKHTSYAFHK----------DTDE 100

Query: 117 EESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRK 176
            E+      D  W+L VGSKVRA+VS+EMQLKMFGDQRR+DFV  GVWALKF SD  YR+
Sbjct: 101 NEN------DDVWLLTVGSKVRARVSSEMQLKMFGDQRRVDFVADGVWALKFPSDDTYRR 154

Query: 177 FVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPESVT 236
           FVTEFQ  +FENVYG++ TEENK+K+YGKEFIGWVKPE ADDS+WEDA  G  +   S +
Sbjct: 155 FVTEFQSCMFENVYGIECTEENKVKIYGKEFIGWVKPEAADDSVWEDAVSG--EPSPSPS 212

Query: 237 PVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDG 296
           P R   DL+EEFEE ANGGVQ+LTLGALDNSF+V+D G+ VYRN++RGIH KGV+V+F  
Sbjct: 213 PSRRRNDLMEEFEEAANGGVQTLTLGALDNSFMVNDTGVHVYRNFDRGIHGKGVAVKF-- 270

Query: 297 GSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGT 356
                G  STP KALLMR ETNMMLMSPL DGKP A  + QLDIETGKIVTEWKF KDG 
Sbjct: 271 ----AGDGSTPNKALLMRAETNMMLMSPLNDGKPHASKLHQLDIETGKIVTEWKFGKDGA 326

Query: 357 DITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS-PVLHWTQG 415
           D+TMRDITNDTK SQLDPSESTFLGLDDNRLCQWDMRDR GIVQN+    S PVLHW+QG
Sbjct: 327 DLTMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATASSSPVLHWSQG 386

Query: 416 HQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG 475
           HQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSKTSMR AKTAFPGLGSPIT VDVTYDG
Sbjct: 387 HQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTSMRMAKTAFPGLGSPITSVDVTYDG 446

Query: 476 KWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH 535
           KW+LGTTDTYL+LICTLF+DKDG+TKTGFSGRMGN+IPAPRLLKLTPLDSHLAG +NK H
Sbjct: 447 KWVLGTTDTYLVLICTLFTDKDGRTKTGFSGRMGNRIPAPRLLKLTPLDSHLAGANNKFH 506

Query: 536 GGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDE 595
           GGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQ+GLKSCYCYKI+LKDE
Sbjct: 507 GGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQEGLKSCYCYKIILKDE 566

Query: 596 SIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           SIVESRFMHDKFAV+DSPEAPLVVATPMKVSSIS+SG+R
Sbjct: 567 SIVESRFMHDKFAVSDSPEAPLVVATPMKVSSISMSGKR 605

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230321|ref|NP_188555.1| Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana] gi|9294626|dbj|BAB02965.1| dem protein [Arabidopsis thaliana] gi|332642691|gb|AEE76212.1| Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/654 (73%), Positives = 542/654 (82%), Gaps = 27/654 (4%)

Query: 1   MGTSQSREDYISDSDYEESESGESSQYDDAQETS---SSSSQSGTKTLNSLD-------- 49
           MGTSQSRED IS+SD E        + +D  + +    SSS SGT+  +S          
Sbjct: 1   MGTSQSREDRISESDTESDSDYYEEEDEDQYDDAKKQGSSSVSGTRPSDSSSSSGPTDSS 60

Query: 50  --EVDAKLKSLKLKY--STPQSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNK 105
             +++ KLK+LKLKY  S+  +P +KN VKLY HIGGNTPKAKW++SDK+TSY FV+T+ 
Sbjct: 61  SLDIEQKLKALKLKYPSSSSVTPKMKNAVKLYRHIGGNTPKAKWIVSDKMTSYKFVKTSS 120

Query: 106 INGGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWA 165
           ++G +  D D+ E E G  G+ FW L VG+KV+A+VST+MQLKMFGDQRR+DFV  GVWA
Sbjct: 121 VDGEDIDDYDDCE-ESGEGGESFWFLGVGTKVKARVSTDMQLKMFGDQRRVDFVSNGVWA 179

Query: 166 LKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDAD 225
           LKF +D +YRKFVT FQD LFENVY ++A+EEN++KVYGK+FIGW  PE ADDSMWEDA+
Sbjct: 180 LKFLTDEDYRKFVTRFQDYLFENVYKIRASEENRVKVYGKDFIGWANPEAADDSMWEDAE 239

Query: 226 DGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGI 285
                  E  T  + N DL EEFEE+ANGGVQSLTLGALDNSFLV+D G+QVYRN  RGI
Sbjct: 240 A---PPEEEETQGKRNTDLTEEFEEVANGGVQSLTLGALDNSFLVNDYGVQVYRNMERGI 296

Query: 286 HNKGVSVRFDGGSSKIGSNS---TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET 342
           H KGV VRFD G+SK GS S   TP KALLMR ETNMMLMSP K GKP + GV+QLDIE+
Sbjct: 297 HGKGVCVRFDSGNSKFGSGSSQTTPNKALLMRAETNMMLMSPAKQGKPNSTGVKQLDIES 356

Query: 343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM 402
           GKIVTEWKFEKDGT+ITMRDITNDTK SQLDPSESTFLGLDDNRLCQWDMRDR GIVQN+
Sbjct: 357 GKIVTEWKFEKDGTEITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRRGIVQNI 416

Query: 403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGL 462
              DSP+L WTQGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSKTSMR AKTAFPGL
Sbjct: 417 ---DSPILEWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTSMRMAKTAFPGL 473

Query: 463 GSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTP 522
           GSPITHVDV+YDGKWILGTTDTYL+LICTLF+DK+G TKTGFSGRMGNKIPAPRLLKLTP
Sbjct: 474 GSPITHVDVSYDGKWILGTTDTYLVLICTLFTDKNGLTKTGFSGRMGNKIPAPRLLKLTP 533

Query: 523 LDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGL 582
           LDSHLAG DNK HGGHFSWVTE+GKQERH+VATVGKFSVIWD ++VKNSAHECYRNQQGL
Sbjct: 534 LDSHLAGKDNKFHGGHFSWVTESGKQERHIVATVGKFSVIWDLERVKNSAHECYRNQQGL 593

Query: 583 KSCYCYKIVLKDESIVESRFMHDKFAVT--DSPEAPLVVATPMKVSSISLSGRR 634
           KSCYCYKI+LKDESIVESRFMHD F+ +   SPEAPLVVATP+KVSSISLSG+R
Sbjct: 594 KSCYCYKILLKDESIVESRFMHDNFSFSGNKSPEAPLVVATPLKVSSISLSGKR 647

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137482|ref|XP_002327137.1| predicted protein [Populus trichocarpa] gi|222835452|gb|EEE73887.1| predicted protein [Populus trichocarpa]

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/648 (71%), Positives = 534/648 (82%), Gaps = 17/648 (2%)

Query: 1   MGTSQSREDY-ISDSDYEESESGESSQYDDAQETSSSSSQSG---TKTLNSLDEVDAKLK 56
           MG S SRED  +SDSD E  +  E S  D + ET   SS +G    KT +S DEV++KLK
Sbjct: 1   MGGSHSREDLELSDSDAESQQEEEDSYQDVSTETPEKSSSAGRNRPKTPSSFDEVESKLK 60

Query: 57  SLKLKY-----STPQSPN--VKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGG 109
           +LKLKY      T QSPN   KN VKLYLHIGGNTPKAKWV S+KLT+YSF++T+KING 
Sbjct: 61  ALKLKYPSTTTQTQQSPNPNFKNGVKLYLHIGGNTPKAKWVTSEKLTTYSFIKTSKINGQ 120

Query: 110 NDSDDDEEESEKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFF 169
           N+ +++EE   + V    +WVLKV +K+RAKV+ EMQLK F +QRR+DFV +GVWA+KFF
Sbjct: 121 NEEEEEEESESEEV---AWWVLKVSTKIRAKVAVEMQLKTFKEQRRVDFVAEGVWAMKFF 177

Query: 170 SDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLD 229
           SD +Y+ F +++QD LFEN +G ++ E NK+KVYGK+F+GW  P  ADDSMWEDA+D   
Sbjct: 178 SDEDYKLFNSKYQDCLFENTFGYESNEANKVKVYGKDFVGWADPGKADDSMWEDAEDEFL 237

Query: 230 KTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKG 289
           K+P S TP  GN+DL EEFEE ANGG+QSL LGALDNSFLV D G+QV +N++ GIH KG
Sbjct: 238 KSPGSATPASGNQDLREEFEEAANGGIQSLALGALDNSFLVGDSGIQVVKNFSHGIHGKG 297

Query: 290 VSVRFDGGSSKIGSN---STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIV 346
           V V F  G+   GSN   STPKKALLMR ETNM+LMSP+ +GK  + G+ QLDIETGKI+
Sbjct: 298 VYVNFGSGNHSSGSNLVHSTPKKALLMRAETNMLLMSPMNEGKLHSTGLHQLDIETGKII 357

Query: 347 TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD 406
           TEWKFEKDGTDITMRDI ND+K +QLDPS STFLGLDDNRLC+WDMRDR GIVQN+   +
Sbjct: 358 TEWKFEKDGTDITMRDIANDSKGAQLDPSGSTFLGLDDNRLCRWDMRDRHGIVQNLASAN 417

Query: 407 SPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466
           +PVL+WTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYS  SMRQAKTAFPGLGSPI
Sbjct: 418 TPVLNWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSTNSMRQAKTAFPGLGSPI 477

Query: 467 THVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSH 526
           THVDVT+DGKWILGTTDTYLILIC+LF+DKDGKTKTGF+GRMGN+I APRLLKLTPLDSH
Sbjct: 478 THVDVTFDGKWILGTTDTYLILICSLFTDKDGKTKTGFNGRMGNRIAAPRLLKLTPLDSH 537

Query: 527 LAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCY 586
           LAG + K     FSWVTENGKQERHLVATVGKFSVIW+FQQVKN +HECYRNQ+GLKSCY
Sbjct: 538 LAGVNKKFQKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYRNQEGLKSCY 597

Query: 587 CYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
           CYKIVLKD+SIV+SRFMHDKFAV+DSPEAPLV+ATPMKVSS S+S RR
Sbjct: 598 CYKIVLKDDSIVDSRFMHDKFAVSDSPEAPLVIATPMKVSSFSISSRR 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
TAIR|locus:2094113	648	AT3G19240 "AT3G19240" [Arabido	0.924	0.904	0.760	5.1e-248
TAIR|locus:2119221	645	AT4G33400 "AT4G33400" [Arabido	0.917	0.902	0.658	1.6e-214
CGD|CAL0001289	745	VID27 [Candida albicans (taxid	0.340	0.289	0.338	6.5e-26
UNIPROTKB|Q59L93	745	VID27 "Putative uncharacterize	0.340	0.289	0.338	6.5e-26
DICTYBASE|DDB_G0274813	938	DDB_G0274813 "WD40-like domain	0.533	0.360	0.259	4.1e-24
POMBASE|SPBC1685.14c	801	SPBC1685.14c "Vid27 family pro	0.610	0.483	0.279	1.6e-22
ASPGD|ASPL0000039484	796	AN3005 [Emericella nidulans (t	0.660	0.526	0.262	2.9e-17
SGD|S000005156	782	VID27 "Cytoplasmic protein of	0.334	0.271	0.288	1.8e-12

TAIR|locus:2094113 AT3G19240 "AT3G19240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2389 (846.0 bits), Expect = 5.1e-248, P = 5.1e-248
 Identities = 457/601 (76%), Positives = 512/601 (85%)

Query:    41 GTKTLNSLDEVDAKLKSLKLKYSTPQS--PNVKNPVKLYLHIGGNTPKAKWVISDKLTSY 98
             G    +SLD ++ KLK+LKLKY +  S  P +KN VKLY HIGGNTPKAKW++SDK+TSY
Sbjct:    55 GPTDSSSLD-IEQKLKALKLKYPSSSSVTPKMKNAVKLYRHIGGNTPKAKWIVSDKMTSY 113

Query:    99 SFVRTNKINGGNXXXXXXXXXXKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDF 158
              FV+T+ ++G +           G  G+ FW L VG+KV+A+VST+MQLKMFGDQRR+DF
Sbjct:   114 KFVKTSSVDGEDIDDYDDCEES-GEGGESFWFLGVGTKVKARVSTDMQLKMFGDQRRVDF 172

Query:   159 VDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADD 218
             V  GVWALKF +D +YRKFVT FQD LFENVY ++A+EEN++KVYGK+FIGW  PE ADD
Sbjct:   173 VSNGVWALKFLTDEDYRKFVTRFQDYLFENVYKIRASEENRVKVYGKDFIGWANPEAADD 232

Query:   219 SMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVY 278
             SMWEDA+   +   E  T  + N DL EEFEE+ANGGVQSLTLGALDNSFLV+D G+QVY
Sbjct:   233 SMWEDAEAPPE---EEETQGKRNTDLTEEFEEVANGGVQSLTLGALDNSFLVNDYGVQVY 289

Query:   279 RNYNRGIHNKGVSVRFDGGSSKIGSNS---TPKKALLMRGETNMMLMSPLKDGKPQAPGV 335
             RN  RGIH KGV VRFD G+SK GS S   TP KALLMR ETNMMLMSP K GKP + GV
Sbjct:   290 RNMERGIHGKGVCVRFDSGNSKFGSGSSQTTPNKALLMRAETNMMLMSPAKQGKPNSTGV 349

Query:   336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR 395
             +QLDIE+GKIVTEWKFEKDGT+ITMRDITNDTK SQLDPSESTFLGLDDNRLCQWDMRDR
Sbjct:   350 KQLDIESGKIVTEWKFEKDGTEITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDR 409

Query:   396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQA 455
              GIVQN+   DSP+L WTQGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSKTSMR A
Sbjct:   410 RGIVQNI---DSPILEWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTSMRMA 466

Query:   456 KTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP 515
             KTAFPGLGSPITHVDV+YDGKWILGTTDTYL+LICTLF+DK+G TKTGFSGRMGNKIPAP
Sbjct:   467 KTAFPGLGSPITHVDVSYDGKWILGTTDTYLVLICTLFTDKNGLTKTGFSGRMGNKIPAP 526

Query:   516 RLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHEC 575
             RLLKLTPLDSHLAG DNK HGGHFSWVTE+GKQERH+VATVGKFSVIWD ++VKNSAHEC
Sbjct:   527 RLLKLTPLDSHLAGKDNKFHGGHFSWVTESGKQERHIVATVGKFSVIWDLERVKNSAHEC 586

Query:   576 YRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTD--SPEAPLVVATPMKVSSISLSGR 633
             YRNQQGLKSCYCYKI+LKDESIVESRFMHD F+ +   SPEAPLVVATP+KVSSISLSG+
Sbjct:   587 YRNQQGLKSCYCYKILLKDESIVESRFMHDNFSFSGNKSPEAPLVVATPLKVSSISLSGK 646

Query:   634 R 634
             R
Sbjct:   647 R 647

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2119221 AT4G33400 "AT4G33400" [Arabidopsis thaliana (taxid:3702)]

 Score = 2073 (734.8 bits), Expect = 1.6e-214, P = 1.6e-214
 Identities = 390/592 (65%), Positives = 474/592 (80%)

Query:    46 NSLDEVDAKLKSLKLKYSTPQS-PNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTN 104
             +SLD+V+AKL++LKLKY   QS P+ +N  +L+ +I GNTPKAKWV ++KLT+Y FV+TN
Sbjct:    61 SSLDDVEAKLQALKLKYPLTQSAPSTQNSARLFRYINGNTPKAKWVTAEKLTAYCFVKTN 120

Query:   105 KINGGNXXXXXXXXXXKGVLGDGFWVLKVGSKVRAKVSTEMQLKMFGDQRRIDFVDKGVW 164
             K   G+           G + + +W+LKVGSK+R KVS EMQLK + DQRR+DFV K VW
Sbjct:   121 K---GDEDDEDDDE--NGDVENEWWILKVGSKIREKVSDEMQLKAYKDQRRVDFVAKAVW 175

Query:   165 ALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDA 224
             A+KF S  ++  FV+ + + LFEN +G++  E NK K+YGK+FIGW  PE ADDSMWEDA
Sbjct:   176 AMKFASSEDFSVFVSSYNNCLFENNHGVEFNEANKAKIYGKDFIGWANPEAADDSMWEDA 235

Query:   225 DDGLDKTPE--SVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVSDLGLQVYRNYN 282
             DD L ++P   S TP R  +DL E FEE  + G+ SL LGALDNSFLV D G+QV++N  
Sbjct:   236 DDILLQSPGGGSATPARDTQDLTEAFEEATSEGIHSLALGALDNSFLVGDSGIQVFKNMR 295

Query:   283 RGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET 342
             +GI  KGV V F+ G  +  S S PKKALLMR ETNM+LMSP+    P + G+ QLDIET
Sbjct:   296 QGIQGKGVCVNFEPGYGRTHS-SAPKKALLMRAETNMLLMSPMSQ-TPHSRGIHQLDIET 353

Query:   343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM 402
             GKI++EWKFEKDG DI+M DITND K +QLDPS STFLGLD+NRLC+WDMRDR G+VQ++
Sbjct:   354 GKIISEWKFEKDGVDISMSDITNDGKGAQLDPSASTFLGLDNNRLCRWDMRDRYGMVQDL 413

Query:   403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGL 462
                ++PVL+W QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS  +MRQAKTAFPGL
Sbjct:   414 ATANTPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSSNTMRQAKTAFPGL 473

Query:   463 GSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTP 522
             G+P+THVD T+DGKWI+GTTDTYLI+ICTLF+DK GKTKTGF GRMGNKI APRLLKL P
Sbjct:   474 GAPVTHVDATFDGKWIVGTTDTYLIVICTLFTDKSGKTKTGFEGRMGNKIAAPRLLKLRP 533

Query:   523 LDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGL 582
             LD+HLAG+DNK     FSWVTE+GKQERH+VATVGKFSVIW+FQQVKN +HECY +Q+GL
Sbjct:   534 LDAHLAGSDNKFRNAQFSWVTEDGKQERHVVATVGKFSVIWNFQQVKNGSHECYHDQEGL 593

Query:   583 KSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634
             K CYCYKIVL++ESIV+SRFM+D FA++ SPEAPLV+ATPMKVSS SLS +R
Sbjct:   594 KKCYCYKIVLRNESIVDSRFMNDNFAISGSPEAPLVIATPMKVSSFSLSSKR 645

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006260 "DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

CGD|CAL0001289 VID27 [Candida albicans (taxid:5476)]

 Score = 261 (96.9 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
 Identities = 81/239 (33%), Positives = 115/239 (48%)

Query:   337 QLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396
             ++D+  GKIV EW+  KD   + ++     +K +QL   E T  G+  N L   D R  S
Sbjct:   469 KMDLTRGKIVEEWEVSKD---VPVKSYAPTSKFAQLT-DEQTLTGISSNGLFTIDPR-LS 523

Query:   397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK 456
             G    +V   +   + T  +QF      Q  A+T  G I +GS  G IRL+ +     AK
Sbjct:   524 GT--KLVNDKTYKAYKTTNNQF------QTLATTDKGYIALGSGKGDIRLFDRLGAN-AK 574

Query:   457 TAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSD-KDGKTKTGFSGRMG-NKIPA 514
             TA P LG PI  +DV+ DG+W+L T  TYL+LI    SD +    K GF+     +K P 
Sbjct:   575 TALPSLGDPIIGIDVSKDGRWLLATCKTYLLLIDNKISDGQKNAGKLGFTNYFDKDKKPT 634

Query:   515 PRLLKLTPLDSHLAGTDNKIHGGHFSWV-----TENGKQERHLVATVGKFSVIWDFQQV 568
             PR L L P   H A    +  G   S+      T    +E  +V ++GK+ V W   +V
Sbjct:   635 PRRLALKP--EHEAYMVRENGGKQLSFTPAYFNTGRDSKETTIVTSLGKYVVTWSMGKV 691

GO:0003674 "molecular_function" evidence=ND

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q59L93 VID27 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 261 (96.9 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
 Identities = 81/239 (33%), Positives = 115/239 (48%)

Query:   337 QLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396
             ++D+  GKIV EW+  KD   + ++     +K +QL   E T  G+  N L   D R  S
Sbjct:   469 KMDLTRGKIVEEWEVSKD---VPVKSYAPTSKFAQLT-DEQTLTGISSNGLFTIDPR-LS 523

Query:   397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK 456
             G    +V   +   + T  +QF      Q  A+T  G I +GS  G IRL+ +     AK
Sbjct:   524 GT--KLVNDKTYKAYKTTNNQF------QTLATTDKGYIALGSGKGDIRLFDRLGAN-AK 574

Query:   457 TAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSD-KDGKTKTGFSGRMG-NKIPA 514
             TA P LG PI  +DV+ DG+W+L T  TYL+LI    SD +    K GF+     +K P 
Sbjct:   575 TALPSLGDPIIGIDVSKDGRWLLATCKTYLLLIDNKISDGQKNAGKLGFTNYFDKDKKPT 634

Query:   515 PRLLKLTPLDSHLAGTDNKIHGGHFSWV-----TENGKQERHLVATVGKFSVIWDFQQV 568
             PR L L P   H A    +  G   S+      T    +E  +V ++GK+ V W   +V
Sbjct:   635 PRRLALKP--EHEAYMVRENGGKQLSFTPAYFNTGRDSKETTIVTSLGKYVVTWSMGKV 691

GO:0003674 "molecular_function" evidence=ND

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

DICTYBASE|DDB_G0274813 DDB_G0274813 "WD40-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 303 (111.7 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 100/385 (25%), Positives = 172/385 (44%)

Query:   214 EVADDSMWEDADDGLDKTPESVTPV-RGNRDLLEEFEELANGGVQSLTLGALDNSFLVSD 272
             E  +D   E++D+  D+  +S   +    + + ++F +  N    SL +G  D S++V  
Sbjct:   551 ESDEDEDEEESDEDEDEESDSEENLSEDKKQISKDFSKSKNS---SLIVGYKDKSYVVRG 607

Query:   273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332
               + V+   + GI     +        K G N +PKK +L + +  +++++P K      
Sbjct:   608 STIGVFNTDDDGIK---FNTAITNIKQKDGKNFSPKKMMLQQQDQTLLMLNPEKKSN--- 661

Query:   333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM 392
               V ++D+    IV EW             + +  K+   + +   F+G + N +   D 
Sbjct:   662 --VYKMDLNRPDIVEEWDMNWRNQPTLTNSVVSQYKNDD-ETNNQLFVGYNGNNMFLVDP 718

Query:   393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSM 452
             R+    V     G S     T            C A+TG G I  G+  G+I+L+SKT  
Sbjct:   719 RESKNKVTVKFHGGSNPKSVTT-----------CAATTGSGQIAFGTSKGEIKLFSKTQF 767

Query:   453 RQAK----------------TAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDK 496
              Q K                T  PG+G PI  +DVT DGKWI+ T   Y+++I    S K
Sbjct:   768 DQNKRSVTSSDPLGAIARSRTTLPGIGDPIVGIDVTKDGKWIVATCKQYIMVIPA--SLK 825

Query:   497 DGKTKTGFSGRMGNKIPAPRLLKLTPLD-SHLAGTDNKIHGGHFSWVTENGKQERHLVAT 555
             DG +  GF  R+G + P+P+ L L P D   + G  N      F+ V +  + E  ++ +
Sbjct:   826 DGSS--GFEDRLGARRPSPKRLILKPQDIKRMGGVVN-FTPAKFNIVGDE-QSETSILTS 881

Query:   556 VGKFSVIWDFQQVKNSAHECYRNQQ 580
              G F + W+F+++K +  + Y+ +Q
Sbjct:   882 TGSFLITWNFRKIKQNILDVYQIKQ 906

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC1685.14c SPBC1685.14c "Vid27 family protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 293 (108.2 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 123/440 (27%), Positives = 201/440 (45%)

Query:   164 WALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWED 223
             W L+F  DS+ R  + +FQ+ L   ++     ++  +K+   E   +V     +D   ED
Sbjct:   326 WLLRF--DSQVR--MEQFQELLMRALWE-SLNQQRWLKI-DDEQRDYVMETFHEDEELED 379

Query:   224 ADDG-------LDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLG------ALDNSFLV 270
             ++D        L +  E         D  + F + ++G    L         A +++ L+
Sbjct:   380 SEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDGEADDLDESRWRKEAAKEHNSLL 439

Query:   271 SDLGLQVYRNYNRGIHNKGVSVRFDGGSSK----IGSNSTPKKALLMRGETNMMLM---S 323
             + +G +  R+Y    +  GV    D    K    + + STPK   L    + +ML    S
Sbjct:   440 A-VGYKNDRSYVVRNNKIGVFKHVDEKGLKFQTALNNLSTPKGKSLR--PSKLMLHNQDS 496

Query:   324 PLKDGKPQAP-GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL 382
              +      AP  +  +DIE GKIV EWK   D   +T    T D K +Q+  +E T +GL
Sbjct:   497 SILFQTENAPHSLYHMDIEYGKIVDEWKVHDDVPLVTF---TPDNKFAQMT-AEQTLIGL 552

Query:   383 DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDG 442
              +N + + D R         V+G+  V    Q  Q++   +F   A+T +G I V S  G
Sbjct:   553 SNNSIFRIDPR---------VEGNKLVAE--QFKQYATKNDFSSAATTENGYIAVASNKG 601

Query:   443 KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKT 502
              IRL+ +  +  AKTA P LG  I  VDVT  G ++L T  TY++LI T   +     + 
Sbjct:   602 DIRLFDRIGVN-AKTALPALGEAIIGVDVTASGDFVLATCKTYILLIDTRIKEGRYAGRL 660

Query:   503 GFSGRMG-NKIPAPRLLKLTPLDSHLAGTDNKIHGG-HFSWVTEN-G--KQERHLVATVG 557
             GF      +K P P+ L+L+P   H+A    ++ GG  F+    N G   +E  +V+++G
Sbjct:   661 GFERNFAKDKKPKPKRLQLSP--QHIAMMQRELKGGASFTPAKFNTGIDAKETTIVSSIG 718

Query:   558 KFSVIWDFQQVKNSAHECYR 577
              F + W+  +VK    + Y+
Sbjct:   719 PFLISWNLDRVKRGFTDSYK 738

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000039484 AN3005 [Emericella nidulans (taxid:162425)]

 Score = 245 (91.3 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 124/473 (26%), Positives = 193/473 (40%)

Query:   164 WALKFFSDSEYRKFVTEFQDRLFENVYG-LKATEENKMKVYGKEFIGWVKPEVA-DDSMW 221
             W L+F  D E  +    FQ  L + ++  L  T+  K+K   K+++     ++  +D+  
Sbjct:   323 WLLRF-KDQETEE---RFQQGLLQALWEQLNETKWTKVKDNDKDYVLDAFQDLTMEDADA 378

Query:   222 EDADDGLDKTPESVTPVRGNRDLLEEFEELANGGVQSLTLGALDNSFLVS---DLGLQVY 278
              D ++  ++  E      G R    + +E  +  V     G +++   V    D    V 
Sbjct:   379 ADQEEEEEEEEEEEEANDGQRSEHYDSDEEQDDVVTRDEDGNINSQLAVGYKHDRSF-VV 437

Query:   279 RNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSP----LKDGKPQAPG 334
             R    G+         +  S+ I    TPK  L       +ML +     +         
Sbjct:   438 RGSKIGVFKHTPDNNLEF-STNISKVETPKGKLF--SPKKVMLHAEDSNLILQNGDDPKS 494

Query:   335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394
             + ++D+E GKI+ EWK   D   I ++    ++K SQ+  S   F+    N L + D R 
Sbjct:   495 LYRMDLEYGKIIDEWKIHDD---IPVQTFAPESKFSQMT-SAQPFVAASHNALFRVDPR- 549

Query:   395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQ 454
                     V G+  V    +  Q++   +F   A+T  G + V S  G IR++ +  +  
Sbjct:   550 --------VAGNKLVD--AELKQYASKNDFSALATTEKGYLAVASNKGDIRMFDRLGIN- 598

Query:   455 AKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKT--KTGFSGRMG-NK 511
             AKT  P LG  I  +DV+ DG+W+L T  TYL+LI  L   KDGK   K GF      + 
Sbjct:   599 AKTHIPALGEAIIGLDVSADGRWVLATCRTYLLLIDAL--QKDGKNEGKLGFERSFAKDS 656

Query:   512 IPAPRLLKLTPLDSHLAG----TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567
              P PR L LTP  +H+A     T   I      + T    +E  +V   G F V W  ++
Sbjct:   657 KPQPRRLGLTP--AHVAQFQHETKKPISFTPARFNTGVDTEETSIVTATGPFIVTWSLKK 714

Query:   568 VKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVA 620
             V            G K  Y  K   +D      RF  DK  +   P    +VA
Sbjct:   715 VV----------AGRKDPYTIKRYSEDVMADNFRFGSDKNVIVALPNEVNMVA 757

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

SGD|S000005156 VID27 "Cytoplasmic protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 201 (75.8 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 70/243 (28%), Positives = 110/243 (45%)

Query:   337 QLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396
             ++DIE GK++ EW     G D  +       K  Q+ P E T +G+    + + D R   
Sbjct:   496 KMDIERGKVIEEWS---TG-DKNVVQYGPTKKFDQMTP-EQTIVGVSQKGVFKIDPRING 550

Query:   397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK 456
                +N +  D       +   +    NF    +T  G I +GS  G I+LY +  +R AK
Sbjct:   551 ---KNKIAVD-------ESKDYVGKYNFSSIGTTESGYIAIGSEKGDIKLYDRLGIR-AK 599

Query:   457 TAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG--NKIPA 514
             TA P LG  I  +  + DGKW+L T ++ L+L+      KDGK     +G +G     PA
Sbjct:   600 TAIPSLGQAIKFITTSADGKWLLATCESTLLLMDLKI--KDGKN----AGNIGFLKSFPA 653

Query:   515 PR-----LLKLTPLDSH--LAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567
                    +LK+ P  S   L  T   I      + T  G+QE+ +V + G +++ W  + 
Sbjct:   654 SENVKTYVLKIRPEHSASILTYTKKPIRFTKAYFNTGIGQQEQTIVTSTGPYAISWSLKG 713

Query:   568 VKN 570
             + N
Sbjct:   714 ILN 716


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      634       593   0.00084  120 3  11 22  0.43    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  342 KB (2171 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  50.86u 0.12s 50.98t   Elapsed:  00:00:02
  Total cpu time:  50.86u 0.12s 50.98t   Elapsed:  00:00:02
  Start:  Fri May 10 13:21:51 2013   End:  Fri May 10 13:21:53 2013

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40781	CYPR4_CYNCA	No assigned EC number	0.7886	0.7618	0.9640	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	634
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	2e-34
COG5167	776	COG5167, VID27, Protein involved in vacuole import	3e-29

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score =  139 bits (352), Expect = 2e-34
 Identities = 121/442 (27%), Positives = 187/442 (42%), Gaps = 79/442 (17%)

Query: 164 WALKFFSDSEYRKFVTEFQDRLFENVYGLKATE-ENKMKVYGKEFIGWVKPE----VADD 218
           W LKF     +  F   F   L+E +   K T+ +   + Y  +    ++ E      DD
Sbjct: 331 WLLKFKDADAFTHFQEGFTQALWETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDD 390

Query: 219 SMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANG-------GVQSLTLG-ALDNSFLV 270
              ED ++  ++  +       + D  EEFEE           G  SL +G   D S++V
Sbjct: 391 EEEEDEEEEEEEDEDEGPSKEHSDD--EEFEEDDVESKYEDSDGNSSLAVGYKNDRSYVV 448

Query: 271 SDLGLQVYRNYNRGIHNKGVSVRFDGGSSKI----GSNSTPKKALLMRGETNMMLMSPLK 326
               + V++      H    S+ F    + +    G + +P K +L   + NM+L  P  
Sbjct: 449 RGDKIGVFK------HTDDDSLEFVTAINNVSDPKGKSFSPHKMMLHNEDRNMILQDPSN 502

Query: 327 DGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386
             K     + ++D+E GK+V EWK      D+ +       K +Q+   E TFLG+  N 
Sbjct: 503 KNK-----LYKMDLEYGKVVDEWKV---SDDVPVVQYAPTKKFAQMTA-EQTFLGISHNG 553

Query: 387 LCQWDMRDRSG--IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKI 444
           + + D R  SG  +V +  K            Q++   +F   A+T  G I V S  G I
Sbjct: 554 VFRIDPR-LSGNKLVDSESK------------QYASKNDFSALATTEKGYIAVASNKGDI 600

Query: 445 RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGF 504
           RL+ +  +  AKTA P LG PI  +DV+ DG+W+L T  TYL+LI TL  D     K GF
Sbjct: 601 RLFDRLGIN-AKTAIPALGDPIIGIDVSADGRWLLATCKTYLLLIDTLIKDGKNAGKLGF 659

Query: 505 SGRM-GNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGK---------------Q 548
                 +  P PR L+L P   H+A             +TE GK               +
Sbjct: 660 LKSFPADAKPQPRRLQLKP--EHVA-----------YMLTETGKPISFTPAYFNTGIDSK 706

Query: 549 ERHLVATVGKFSVIWDFQQVKN 570
           E  +V + G + + W  ++V  
Sbjct: 707 ETTIVTSTGPYVITWSLKKVLQ 728

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score =  123 bits (310), Expect = 3e-29
 Identities = 119/503 (23%), Positives = 199/503 (39%), Gaps = 75/503 (14%)

Query: 116 EEESEKGVLGDGFWVLKVGSKVRAK------VSTEMQLKMFGDQRRIDFV----DKGV-- 163
           +   +  ++ DG  V  +  + R        V TE       DQ+   FV    +  V  
Sbjct: 252 KPHVKVVIVDDGKEVFWIRIETRDDVILFEEVRTETNPYF--DQKNTTFVWNYMEDNVFH 309

Query: 164 -WALKFFSDSEYRKFVTEFQDRLFENVYGLKAT-EENKMKVYGKEFIGWVKPEVADDSMW 221
            ++L+F  + ++ +F++++   L+ N+   K   EE + K Y  +       +  DD ++
Sbjct: 310 SFSLRFLDNLDFLQFLSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILY 369

Query: 222 --------------EDADDGLDKTPESVTPVRG-NRDLLEEFEELANGGVQSLTLGALDN 266
                         E  ++  D   E+    R  + D LE     A+     L +G  + 
Sbjct: 370 FEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFRNE 429

Query: 267 -SFLVSDLGLQVYRNYNRGIHNKGVSVRFDGG----SSKIGSNSTPKKALLMRGETNMML 321
            S++     + V++N + G      S+ F       S   G +  P+K +L   +++++ 
Sbjct: 430 RSYVTRGNSIGVFKNTDEG------SLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIY 483

Query: 322 MSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG 381
              L  G+     + ++DIE GK+V EW  + D     +       K  Q+   E T +G
Sbjct: 484 ---LDGGERDK--LYKMDIERGKVVEEWDLKDD----VVVQYNPYFKFQQMTD-EQTLVG 533

Query: 382 LDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD 441
           L D  + + D R R     N +K         +   +     F    +T  G I   S  
Sbjct: 534 LSDYSVFRIDPRARG----NKIKVV-------ESKDYKTKNKFSSGMTTESGYIAAASRK 582

Query: 442 GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTK 501
           G IRLY +   R AKTA PGLG  I H+DVT +GK IL T   YL+L            +
Sbjct: 583 GDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIKYGQPAGR 641

Query: 502 TGFSGRM-GNKIPAPRLLKLTPLDSHLAGTDNKIHGG------HFSWVTENGKQERHLVA 554
            GF      ++ P P+ L+L P   HLA  +             F+  T     E  +V 
Sbjct: 642 DGFLKSFPASEKPKPKRLQLKP--EHLAHINTYTKEEIDFTPAKFN--TGIDASENTIVT 697

Query: 555 TVGKFSVIWDFQQVKNSAHECYR 577
           + G + + W+   V N     Y+
Sbjct: 698 STGPYVISWNLDDVLNGKLYSYQ 720

Length = 776

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	634
KOG2395	644	consensus Protein involved in vacuole import and d	100.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	100.0
COG5167	776	VID27 Protein involved in vacuole import and degra	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0286	343	consensus G-protein beta subunit [General function	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.92
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.91
KOG0266	456	consensus WD40 repeat-containing protein [General	99.9
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.88
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.87
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.87
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.86
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.86
KOG0286	343	consensus G-protein beta subunit [General function	99.86
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.85
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.84
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.83
PTZ00420	568	coronin; Provisional	99.83
PTZ00421	493	coronin; Provisional	99.82
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.81
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.8
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.8
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.8
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.8
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.79
PTZ00420	568	coronin; Provisional	99.79
PTZ00421	493	coronin; Provisional	99.79
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.79
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.78
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.78
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.78
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.78
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.78
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.76
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.76
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.76
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.76
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.76
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.75
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.75
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.75
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.75
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.74
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.73
KOG0641	350	consensus WD40 repeat protein [General function pr	99.73
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.73
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.73
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.72
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.72
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.72
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.72
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.72
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.72
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.71
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.71
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.68
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.68
KOG0645	312	consensus WD40 repeat protein [General function pr	99.68
KOG0296	399	consensus Angio-associated migratory cell protein	99.67
KOG0267	825	consensus Microtubule severing protein katanin p80	99.67
KOG0645	312	consensus WD40 repeat protein [General function pr	99.67
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.66
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.66
KOG0296	399	consensus Angio-associated migratory cell protein	99.66
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.66
KOG0267	825	consensus Microtubule severing protein katanin p80	99.65
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.64
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.63
KOG0289	506	consensus mRNA splicing factor [General function p	99.63
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.63
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.61
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.61
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.61
KOG0643	327	consensus Translation initiation factor 3, subunit	99.61
KOG0289	506	consensus mRNA splicing factor [General function p	99.6
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.6
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.59
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.58
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.57
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.56
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.56
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.56
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.55
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.54
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.54
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.53
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.53
KOG1539	910	consensus WD repeat protein [General function pred	99.53
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.52
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.52
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.52
KOG0639	705	consensus Transducin-like enhancer of split protei	99.51
KOG0646	476	consensus WD40 repeat protein [General function pr	99.51
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.51
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.51
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.5
KOG2096	420	consensus WD40 repeat protein [General function pr	99.5
KOG4328	498	consensus WD40 protein [Function unknown]	99.5
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.49
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.48
KOG0643	327	consensus Translation initiation factor 3, subunit	99.47
KOG0646	476	consensus WD40 repeat protein [General function pr	99.47
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.46
KOG2096	420	consensus WD40 repeat protein [General function pr	99.45
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.45
KOG1274	933	consensus WD40 repeat protein [General function pr	99.44
KOG0641	350	consensus WD40 repeat protein [General function pr	99.44
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.44
KOG1274	933	consensus WD40 repeat protein [General function pr	99.43
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.42
KOG1188	376	consensus WD40 repeat protein [General function pr	99.42
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.41
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.38
KOG1539	910	consensus WD repeat protein [General function pred	99.38
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.37
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.37
COG2319	466	FOG: WD40 repeat [General function prediction only	99.35
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.33
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.32
KOG1273	405	consensus WD40 repeat protein [General function pr	99.31
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.31
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.29
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.29
KOG0639	705	consensus Transducin-like enhancer of split protei	99.28
COG2319	466	FOG: WD40 repeat [General function prediction only	99.28
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.26
KOG0649	325	consensus WD40 repeat protein [General function pr	99.26
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.22
KOG2321	703	consensus WD40 repeat protein [General function pr	99.21
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.19
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.19
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.19
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.18
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.17
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.16
PRK01742	429	tolB translocation protein TolB; Provisional	99.15
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.14
KOG4328	498	consensus WD40 protein [Function unknown]	99.13
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.13
KOG2048	691	consensus WD40 repeat protein [General function pr	99.12
KOG2048	691	consensus WD40 repeat protein [General function pr	99.12
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.12
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.08
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.06
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.05
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.05
PRK11028	330	6-phosphogluconolactonase; Provisional	99.05
PRK01742	429	tolB translocation protein TolB; Provisional	99.03
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.03
KOG2055	514	consensus WD40 repeat protein [General function pr	99.01
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.99
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.99
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.99
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.96
KOG1273	405	consensus WD40 repeat protein [General function pr	98.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.95
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.95
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.92
KOG1188	376	consensus WD40 repeat protein [General function pr	98.92
PRK11028	330	6-phosphogluconolactonase; Provisional	98.9
KOG1310	758	consensus WD40 repeat protein [General function pr	98.9
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.88
KOG0649	325	consensus WD40 repeat protein [General function pr	98.87
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.84
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.83
KOG1310	758	consensus WD40 repeat protein [General function pr	98.83
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.83
KOG2055	514	consensus WD40 repeat protein [General function pr	98.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.81
PRK03629	429	tolB translocation protein TolB; Provisional	98.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.79
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.78
PRK03629	429	tolB translocation protein TolB; Provisional	98.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.74
KOG2395	644	consensus Protein involved in vacuole import and d	98.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.72
PRK05137	435	tolB translocation protein TolB; Provisional	98.7
PRK04922	433	tolB translocation protein TolB; Provisional	98.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.69
KOG4547	541	consensus WD40 repeat-containing protein [General	98.68
PRK02889	427	tolB translocation protein TolB; Provisional	98.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.65
PRK04922	433	tolB translocation protein TolB; Provisional	98.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.64
KOG4227	609	consensus WD40 repeat protein [General function pr	98.63
PRK02889	427	tolB translocation protein TolB; Provisional	98.62
PRK05137	435	tolB translocation protein TolB; Provisional	98.62
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.61
KOG4227	609	consensus WD40 repeat protein [General function pr	98.6
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.58
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.46
KOG1963	792	consensus WD40 repeat protein [General function pr	98.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.41
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.37
KOG1963	792	consensus WD40 repeat protein [General function pr	98.37
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.36
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.36
KOG2139	445	consensus WD40 repeat protein [General function pr	98.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.26
PRK04792	448	tolB translocation protein TolB; Provisional	98.26
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.25
PRK00178	430	tolB translocation protein TolB; Provisional	98.22
PRK00178	430	tolB translocation protein TolB; Provisional	98.21
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.21
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.19
KOG2139	445	consensus WD40 repeat protein [General function pr	98.19
KOG1334	559	consensus WD40 repeat protein [General function pr	98.16
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.15
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.15
PRK01029	428	tolB translocation protein TolB; Provisional	98.15
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.13
KOG2315	566	consensus Predicted translation initiation factor	98.04
KOG1334	559	consensus WD40 repeat protein [General function pr	97.99
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.98
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	97.94
PRK04792	448	tolB translocation protein TolB; Provisional	97.93
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.91
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.86
PRK01029	428	tolB translocation protein TolB; Provisional	97.85
KOG4547	541	consensus WD40 repeat-containing protein [General	97.82
KOG2695	425	consensus WD40 repeat protein [General function pr	97.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.79
KOG2321	703	consensus WD40 repeat protein [General function pr	97.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.78
KOG2695	425	consensus WD40 repeat protein [General function pr	97.77
COG4946	668	Uncharacterized protein related to the periplasmic	97.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.68
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.56
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.55
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.47
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.32
PRK04043	419	tolB translocation protein TolB; Provisional	97.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.28
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.21
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.15
PRK02888	635	nitrous-oxide reductase; Validated	97.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.08
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.99
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	96.97
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.94
KOG0280	339	consensus Uncharacterized conserved protein [Amino	96.91
PRK04043	419	tolB translocation protein TolB; Provisional	96.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.85
KOG1409	404	consensus Uncharacterized conserved protein, conta	96.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.63
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.57
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.51
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.49
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	96.46
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.42
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.27
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.05
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.01
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.91
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.72
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.67
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.48
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.41
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.21
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.16
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	95.16
COG4946	668	Uncharacterized protein related to the periplasmic	94.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.71
PRK02888	635	nitrous-oxide reductase; Validated	94.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.48
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.2
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.17
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	93.98
KOG2315	566	consensus Predicted translation initiation factor	93.86
KOG2444	238	consensus WD40 repeat protein [General function pr	93.62
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.43
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.42
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.13
KOG3621	726	consensus WD40 repeat-containing protein [General	92.93
KOG2314	698	consensus Translation initiation factor 3, subunit	92.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	90.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.1
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	90.09
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.03
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	89.81
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.8
KOG1912	1062	consensus WD40 repeat protein [General function pr	89.75
KOG2314	698	consensus Translation initiation factor 3, subunit	88.36
COG3391	381	Uncharacterized conserved protein [Function unknow	88.31
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.29
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	87.99
KOG2444	238	consensus WD40 repeat protein [General function pr	87.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	87.67
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.61
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	87.56
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	87.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.13
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	87.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	86.62
COG3391	381	Uncharacterized conserved protein [Function unknow	86.46
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	85.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	84.95
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	84.72
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.66
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	84.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.72
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	83.7
PRK13616	591	lipoprotein LpqB; Provisional	83.01
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	82.41
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	82.22

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-106  Score=863.52  Aligned_cols=608  Identities=41%  Similarity=0.581  Sum_probs=525.4

Q ss_pred             CCCccccccc-ccCCccc----c----ccCCCCCcccccccc---CCCC--cCCCCCC---CCChHHHHHhhccceeccc
Q 047036            1 MGTSQSREDY-ISDSDYE----E----SESGESSQYDDAQET---SSSS--SQSGTKT---LNSLDEVDAKLKSLKLKYS   63 (634)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~~~~---~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~   63 (634)
                      ||+++++++| +..+++|    +    |.++++.+|.++++.   .++.  .+..+++   .++++.++.+++||+|+||
T Consensus         1 r~~~~~~~~l~i~~~~~d~~~d~~d~~e~~eDe~s~~~s~~~~l~~ssis~k~~~~~~~d~~~~~va~e~e~~al~~~y~   80 (644)
T KOG2395|consen    1 RGTSGFIYDLLIGRSDEDSEGDLEDGGEVEEDECSFSLSEDEKLGSSSISGKRKMPKSWDPLQELVAAEHENKALKLKYE   80 (644)
T ss_pred             CCcccchhhheeeecccccccccccccccccccchhhhhhhhhcCcccccccccCCcccccccchhHHHHHhhhhhhhcc
Confidence            8999999998 4444332    2    224556678777765   3222  2344555   4669999999999999998


Q ss_pred             CC--CCCCCCCceeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecceeeeee
Q 047036           64 TP--QSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKV  141 (634)
Q Consensus        64 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~v  141 (634)
                      ..  ..|..+|.++||+||+|++|+||||.++|++.|.|+++.+.+.+..+|++.+-..++....++||+-++.++..+|
T Consensus        81 ~~~~v~~s~~~~~~L~q~i~~~trk~k~v~s~k~~~t~~~~~s~~~~e~~dDedde~~~~g~~e~e~~~~~~et~i~~ev  160 (644)
T KOG2395|consen   81 QKQSVFPSNKNLADLEQFINPNTRKAKEVYSKKGTYTKFVKTSKRDEEFVDDEDDEHDESGDVEDEVWLLRVETKIDEEV  160 (644)
T ss_pred             cceeeccccCCHHHHHHHhCCCCccceEEEecCceEEEeeccccchhhhccchhhhhhhhcccccceeeeecceeeehhc
Confidence            87  4688899999999999999999999999999999999999885533333222113344556789999999999999


Q ss_pred             ccccCcccccccceEEEEeCcEEEEEcCChHHHHHHHHHHHHhHhhhccCCCcchhhhhhhccceecc--ccCCCccccc
Q 047036          142 STEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIG--WVKPEVADDS  219 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~f~~~~~w~lkF~~~~~~~~F~~~~~~~l~e~~~~~~~~~~~k~k~~~~~~~~--~~~~~~~~d~  219 (634)
                      ++.||.+++.+|++..|+.+|+|+++|...++|..|+-.|..|+|+++++...-+++++|.+.+++.+  |+++|+.||+
T Consensus       161 t~~~~iK~~~D~~~e~fi~qgvw~~~f~~~~d~n~Fv~~y~~lrF~d~~~~~qf~~~~vk~l~~~~n~e~w~n~Ea~Dd~  240 (644)
T KOG2395|consen  161 THFEQIKTEEDQRREDFILQGVWAVWFAIDEDINAFVFNYFDLRFEDNLKFEQFEENYVKCLWKDLNGEKWANPEAADDS  240 (644)
T ss_pred             CchhhhcccchhHHHhhhhheeeeeeecccchhhhhhhhhhheeecchHHHHHHHHHHHHHHHHhhcccccCChhhccch
Confidence            99999999999999999999999999999999999999999999999999998899999999999999  9999999999


Q ss_pred             ccccccCCCCCCC--CCCCCcCCCchhhHHHHHHhcC----------CCcEEEeeeCCCeEEEecCeeeEEEccCCceec
Q 047036          220 MWEDADDGLDKTP--ESVTPVRGNRDLLEEFEELANG----------GVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHN  287 (634)
Q Consensus       220 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~LavG~~D~sfvv~G~~igV~k~~~~gl~~  287 (634)
                      +|||+|+.-..+|  ++.+++++..++++.|++..++          +|..|+|||. ++||+|+.+||||++. .|+.+
T Consensus       241 ~~ed~ed~~l~s~~~~Es~~~ee~sd~ed~f~d~s~~~i~sl~~~a~~NS~Lvv~~~-ns~V~Rn~~iGVfk~e-kgl~f  318 (644)
T KOG2395|consen  241 EWEDAEDDRLNSPNEEESEEEEEVSDLEDCFEDESEGGIGSLDEGALDNSFLVVGYG-NSYVTRNNRIGVFKNE-KGLEF  318 (644)
T ss_pred             hhhhhhhhhhcCCCCcccccccccchhhhhhhHhhhcccchhhhcccCCceEEeccc-ceEEEecceeeeeccC-CceEE
Confidence            9999987432222  2234445556666677765422          4668888883 3999999999999985 89999


Q ss_pred             ceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCC
Q 047036          288 KGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDT  367 (634)
Q Consensus       288 ~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~  367 (634)
                      +.++.+++..   .|....|.++|||+++++||++++...     ..|+.+|+++||+|.+|+.|.+   |+++.|.|+.
T Consensus       319 ~~~i~n~s~~---~g~S~~P~K~mL~~~dsnlil~~~~~~-----~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~  387 (644)
T KOG2395|consen  319 KAAIKNVSDG---DGKSIDPHKAMLHRADSNLILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDD---INMVDITPDF  387 (644)
T ss_pred             EeccCcccCC---CccccCcchhhhhccccceEeeCCCCc-----CcceeeecccceeeeEeeccCC---cceeeccCCc
Confidence            8888776654   677789999999999999999999865     6799999999999999999998   5789999999


Q ss_pred             CCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEE
Q 047036          368 KSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLY  447 (634)
Q Consensus       368 K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLW  447 (634)
                      ||+||+ .++++.|.+|+.||+||||..+..          ++.|.|+|+|+++++|+|+|++.+|+||+||.+|.||||
T Consensus       388 K~~Ql~-~e~TlvGLs~n~vfriDpRv~~~~----------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLY  456 (644)
T KOG2395|consen  388 KFAQLT-SEQTLVGLSDNSVFRIDPRVQGKN----------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLY  456 (644)
T ss_pred             chhccc-ccccEEeecCCceEEecccccCcc----------eeeeeeccccccccccceeeecCCceEEEeecCCcEEee
Confidence            999999 599999999999999999965431          355889999999999999999999999999999999999


Q ss_pred             eccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccc
Q 047036          448 SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHL  527 (634)
Q Consensus       448 D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~  527 (634)
                      |..+ ++||+.|||+|++|++|++|.||+||++||++||+|+|+.++|++|.+..||.+.+++++|+||+|+|+|+|.+.
T Consensus       457 dri~-~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~  535 (644)
T KOG2395|consen  457 DRIG-RRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAG  535 (644)
T ss_pred             hhhh-hhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEecccCCccccccccccccccCCCceeeecCHHHhhh
Confidence            9954 679999999999999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             cCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          528 AGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       528 ~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                      ....+.++ ++|+|+||.|++|++||||+|+|+|+|||+.||+|.++|||++++++.||||.+...++++|.++||+|+|
T Consensus       536 ~~~~~k~~-a~Fs~nTg~g~qE~tIVtS~G~f~V~WnLd~VkNg~~~~Yri~r~~~~v~adnf~fg~ds~Viv~l~dDv~  614 (644)
T KOG2395|consen  536 IDNEFKGT-AKFSFNTGIGAQERTIVTSTGPFSVSWNLDRVKNGKHYSYRIRRYLALVVADNFEFGEDSIVIVALPDDVF  614 (644)
T ss_pred             hhhhccCc-eeEEEeccCCcceeeEEEeecceEEEEEhhHhhccCcchhhhhhhccceeEeeEEecCCceEEEecccchh
Confidence            33333333 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC---CCCCCEEEEcCCceeeeeccCCC
Q 047036          608 AVTD---SPEAPLVVATPMKVSSISLSGRR  634 (634)
Q Consensus       608 ~~~~---~~~~~iivA~~~~v~~~~~~~~~  634 (634)
                      .++.   .+.++.++|||.+||+.++++||
T Consensus       615 ~v~~~s~k~p~r~vi~tp~k~s~~d~~~~~  644 (644)
T KOG2395|consen  615 KVSVRSLKRPARLVIATPAKVSSQDLSGKR  644 (644)
T ss_pred             hhcccccCCCCCceecccccccccccccCC
Confidence            7765   57899999999999999999998

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=100.00  E-value=1.1e-97  Score=849.14  Aligned_cols=495  Identities=35%  Similarity=0.527  Sum_probs=426.0

Q ss_pred             CCCCCceeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecce---eeeeeccc
Q 047036           68 PNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSK---VRAKVSTE  144 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~---~~~~v~~~  144 (634)
                      +...+.++||+|   +++.++|++.++.+.+.+++.                    ++|+|||.+.|+.   |+++|+++
T Consensus       249 ~~~~~~~~L~l~---d~~~~~f~lq~~~v~~~i~~~--------------------~~~~y~l~i~~~~~~~l~~~v~s~  305 (794)
T PF08553_consen  249 ILASESAELYLY---DPPTGKFVLQDSSVTAKIIET--------------------GKWEYWLQIEGKDKIWLGQPVSSD  305 (794)
T ss_pred             eeeeeeEEEEEE---cCCCceEEEecCcEEEEEEEc--------------------CCeEEEEEEecCCceEEeeeccCC
Confidence            444588999999   999999999999999999985                    4589999998873   89999999


Q ss_pred             cCcccccccceEEEEe---C---cEEEEEcCChHHHHHHHHHHHHhHhhhccCCCcchh-hhhhhccceeccccCCCccc
Q 047036          145 MQLKMFGDQRRIDFVD---K---GVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEE-NKMKVYGKEFIGWVKPEVAD  217 (634)
Q Consensus       145 ~~~~~~~~~~~~~f~~---~---~~w~lkF~~~~~~~~F~~~~~~~l~e~~~~~~~~~~-~k~k~~~~~~~~~~~~~~~~  217 (634)
                      |||+|..++++++|+.   .   +||||||+++++|++||++|++||||++|+++|.+. ++.+.|..++..|..+++.+
T Consensus       306 mNp~F~~e~lSFiFN~~~~~~~~~sw~lkF~~~~~~~~F~~~~~~~l~E~~n~~~w~~~k~~e~~Y~~~~~~~~~~ed~~  385 (794)
T PF08553_consen  306 MNPVFNFEHLSFIFNYYTEDGSAYSWLLKFKDQEDYERFQEKFMKCLWENLNKMKWSKIKEDEQEYVLDAFSDLEMEDAD  385 (794)
T ss_pred             cCeEEEcceeEEEEEeEcCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhhhccccccc
Confidence            9999999999999996   2   399999999999999999999999999999999775 66777777777777666653


Q ss_pred             cc----ccccccCCCCCCCCCCCCcCCCchhhHHHHHH-------hcCCCcEEEeee-CCCeEEEecCeeeEEEcc-CCc
Q 047036          218 DS----MWEDADDGLDKTPESVTPVRGNRDLLEEFEEL-------ANGGVQSLTLGA-LDNSFLVSDLGLQVYRNY-NRG  284 (634)
Q Consensus       218 d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~LavG~-~D~sfvv~G~~igV~k~~-~~g  284 (634)
                      ++    ++++++++++++++  ++.+.+....++|++.       ..++|++||||| +||||||||++||||++. .++
T Consensus       386 ~~~~~~~~e~e~e~~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~  463 (794)
T PF08553_consen  386 DEEDDEEEEDEEEEEEEEED--EEESSEEYDSEEFEEDDVEEKDKDGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDG  463 (794)
T ss_pred             ccccchhhhccccccccccc--cccccccccccccccccccccccCCCccceeEeeeccCceEEECCCcEeEEECCCCCc
Confidence            32    23332222211111  1111111112333332       234667999999 899999999999999997 566


Q ss_pred             eecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEe
Q 047036          285 IHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDIT  364 (634)
Q Consensus       285 l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs  364 (634)
                      ++|.+++.++.+.   .|..|+|+++|||++|++|||+++.++     +.||.|||++||+|.+|+.|.+.   +|+.|.
T Consensus       464 l~f~t~i~~i~~~---~g~~~~P~k~mL~~~d~~mil~~~~~~-----~~ly~mDLe~GKVV~eW~~~~~~---~v~~~~  532 (794)
T PF08553_consen  464 LEFSTAISNISTP---KGKNFTPKKAMLHDQDRNMILLDPNNP-----NKLYKMDLERGKVVEEWKVHDDI---PVVDIA  532 (794)
T ss_pred             eeeeEEecccccC---CCcccCcchhhhhccccceEeecCCCC-----CceEEEecCCCcEEEEeecCCCc---ceeEec
Confidence            9999888877653   788999999999999999999998865     78999999999999999999873   578999


Q ss_pred             cCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcE
Q 047036          365 NDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKI  444 (634)
Q Consensus       365 Pd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtI  444 (634)
                      |+.|++||++ +++++|.+++.|++||||..+..           +.|.++|+|+++++|+|+|++.+|+||+||.+|.|
T Consensus       533 p~~K~aqlt~-e~tflGls~n~lfriDpR~~~~k-----------~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~I  600 (794)
T PF08553_consen  533 PDSKFAQLTN-EQTFLGLSDNSLFRIDPRLSGNK-----------LVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDI  600 (794)
T ss_pred             ccccccccCC-CceEEEECCCceEEeccCCCCCc-----------eeeccccccccCCCceEEEecCCceEEEEeCCCcE
Confidence            9999999995 89999999999999999976421           12456899999999999999999999999999999


Q ss_pred             EEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCC-CCCCCceeEeecCC
Q 047036          445 RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG-NKIPAPRLLKLTPL  523 (634)
Q Consensus       445 RLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~-~~~p~pr~L~L~Pe  523 (634)
                      ||||..+. +|||+|||+|+||++|++|.||+|||+||++||+|+|+.++++++++..||+++|+ +.+|+||+|+|+|+
T Consensus       601 RLyd~~g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe  679 (794)
T PF08553_consen  601 RLYDRLGK-RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPE  679 (794)
T ss_pred             Eeecccch-hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHH
Confidence            99998875 59999999999999999999999999999999999999999988999999999998 68999999999999


Q ss_pred             Ccccc----CCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeee
Q 047036          524 DSHLA----GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVE  599 (634)
Q Consensus       524 ~~~~~----g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~  599 (634)
                      |++++    +.+++|+||+||  ||.|++|++||||+|+|+|+|||++|++|++.            ||+|++|++.|+ 
T Consensus       680 ~~~~~~~~~~~~~~Ft~a~Fn--t~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~------------~Y~ikry~~~V~-  744 (794)
T PF08553_consen  680 HVAYMQHETGKPISFTPAKFN--TGIGKQETSIVTSTGPFVVTWNFKKVKRGKKD------------PYQIKRYDENVV-  744 (794)
T ss_pred             HHHHHHhccCCCceeeceEEe--cCCCCccceEEEeccCEEEEEEHHHHhCCCCC------------ceEEEEcCCceE-
Confidence            98776    889999999999  78889999999999999999999999999988            578999999999 


Q ss_pred             eccccCccccCCCCCCCEEEEcCCceeeeeccC
Q 047036          600 SRFMHDKFAVTDSPEAPLVVATPMKVSSISLSG  632 (634)
Q Consensus       600 ~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~  632 (634)
                          +|||+||.+  ++|||||||+|+|+++.+
T Consensus       745 ----~dnF~fg~d--~~vival~~dV~m~~~~~  771 (794)
T PF08553_consen  745 ----ADNFKFGSD--KNVIVALPNDVNMVKKKS  771 (794)
T ss_pred             ----EccceeCCC--CcEEEEccchhhhhhhhh
Confidence                888899974  899999999999999865

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.2e-82  Score=675.62  Aligned_cols=479  Identities=24%  Similarity=0.397  Sum_probs=400.4

Q ss_pred             CCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecce---eeeeeccccCcccccccceEEEE
Q 047036           83 NTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSK---VRAKVSTEMQLKMFGDQRRIDFV  159 (634)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~---~~~~v~~~~~~~~~~~~~~~~f~  159 (634)
                      ++...+.|+.+.+.+-.-++.                    ++|.|||.|.+..   +.+.|.++|||.|  ++...+|+
T Consensus       242 d~~~e~Filq~p~Vkv~i~d~--------------------G~~~fw~~Iet~d~~~l~~~V~~~~np~f--~~~~~tFv  299 (776)
T COG5167         242 DTATERFILQKPHVKVVIVDD--------------------GKEVFWIRIETRDDVILFEEVRTETNPYF--DQKNTTFV  299 (776)
T ss_pred             cchhheeeecCCceEEEEEec--------------------CCeEEEEEEecccceeehheeccccCcce--ecccceee
Confidence            444559999999998888874                    5678999998873   9999999999974  47777888


Q ss_pred             eC----c---EEEEEcCChHHHHHHHHHHHHhHhhhccCCCcchhhhhhhccceeccccCC---Cccccccc--cccc--
Q 047036          160 DK----G---VWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKP---EVADDSMW--EDAD--  225 (634)
Q Consensus       160 ~~----~---~w~lkF~~~~~~~~F~~~~~~~l~e~~~~~~~~~~~k~k~~~~~~~~~~~~---~~~~d~~~--~~~~--  225 (634)
                      ||    +   ||+|||.++..|.+|++.|++|||++||+.+|+.+.   .-.++||.....   |..+|++.  ++.+  
T Consensus       300 wny~~~n~~~s~~LrF~d~~~~~qF~~~~i~cLw~~lN~e~w~~~~---~e~kDYilds~~~~~E~q~~d~~~f~~~~~e  376 (776)
T COG5167         300 WNYMEDNVFHSFSLRFLDNLDFLQFLSKYIGCLWRNLNNEKWGNEE---AERKDYILDSSSVPLEKQFDDILYFEKMEIE  376 (776)
T ss_pred             eeeecccchheeeeeecchhHHHHHHHHHHHHHHHHhhhhhccCch---hhhhccccccccCchhhccchhHHHHHhhhh
Confidence            75    2   999999999999999999999999999999985432   336789887542   11222221  1110  


Q ss_pred             ---CCCCCCCCCCCCcCCCc------hhhHHHHH---HhcCCCcEEEeee-CCCeEEEecCeeeEEEccCCc-eecceeE
Q 047036          226 ---DGLDKTPESVTPVRGNR------DLLEEFEE---LANGGVQSLTLGA-LDNSFLVSDLGLQVYRNYNRG-IHNKGVS  291 (634)
Q Consensus       226 ---~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~LavG~-~D~sfvv~G~~igV~k~~~~g-l~~~~~~  291 (634)
                         .++++++++.++.+.+.      ...+++|+   ++..+|..|+||| ++||||+||++||||++.+.+ |+|+.++
T Consensus       377 ~r~~eesE~eee~ed~ede~~~~k~~~~dd~~E~~~raa~e~Ns~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aai  456 (776)
T COG5167         377 NRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAI  456 (776)
T ss_pred             ccCcccchhhhhhhhhhcccccccccccchhhhhhhhhhcccCceEEEEEcccceeEeeCCeeeeEeccCCcceehhhhh
Confidence               00000111111111100      01223333   4566788999999 999999999999999996666 9999999


Q ss_pred             EEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCC
Q 047036          292 VRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQ  371 (634)
Q Consensus       292 ~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q  371 (634)
                      .+++..   .|+.+.|.+.|||++|+++|++.+...     ..++.||+++||+|.+|..|.+-    ||.|.|+.||+|
T Consensus       457 knvs~~---~GKSidp~K~mlh~~dssli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv----vVqy~p~~kf~q  524 (776)
T COG5167         457 KNVSDD---GGKSIDPEKIMLHDNDSSLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV----VVQYNPYFKFQQ  524 (776)
T ss_pred             hhccCC---CCCcCChhhceeecCCcceEEecCCCc-----ccceeeecccceeeeEeecCCcc----eeecCCchhHHh
Confidence            888764   789999999999999999999998865     57999999999999999999873    679999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccc
Q 047036          372 LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       372 ~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t  451 (634)
                      ||+ ++++.|.+++.|+++|||.++..+..           .+.++|+++++|+|++++..|+||+||..|.|||||+.+
T Consensus       525 mt~-eqtlvGlS~~svFrIDPR~~gNKi~v-----------~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig  592 (776)
T COG5167         525 MTD-EQTLVGLSDYSVFRIDPRARGNKIKV-----------VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG  592 (776)
T ss_pred             cCc-cceEEeecccceEEecccccCCceee-----------eeehhccccccccccccccCceEEEecCCCceeeehhhc
Confidence            996 89999999999999999987643222           146899999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCC-CCCCCceeEeecCCCcccc--
Q 047036          452 MRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG-NKIPAPRLLKLTPLDSHLA--  528 (634)
Q Consensus       452 ~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~-~~~p~pr~L~L~Pe~~~~~--  528 (634)
                      .| ||+.|||+|+.|.+|+++.+|+||++||.+||+|.|+.+++++..+..||...|+ ..+|.|++|||+|+|.+.+  
T Consensus       593 ~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik~g~~aGr~GF~ksF~~~ekpkpkrLql~PeH~A~i~~  671 (776)
T COG5167         593 KR-AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIKYGQPAGRDGFLKSFPASEKPKPKRLQLKPEHLAHINT  671 (776)
T ss_pred             ch-hhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccccCCccccchhhhcCccccCCCcceeecCHHHHHHHHH
Confidence            75 9999999999999999999999999999999999999998888888889999997 6689999999999997543  


Q ss_pred             --CCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCc
Q 047036          529 --GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDK  606 (634)
Q Consensus       529 --g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~  606 (634)
                        ..++.||||+||  ||.+.+|++||||+|+|+|.|||+.||+|.++            +|+|+||+..|+     +||
T Consensus       672 ~~K~~i~FTpAkFn--TGIda~E~tIVtStGpy~IsWnLd~vlng~~y------------sY~irry~a~Vv-----Adn  732 (776)
T COG5167         672 YTKEEIDFTPAKFN--TGIDASENTIVTSTGPYVISWNLDDVLNGKLY------------SYQIRRYSALVV-----ADN  732 (776)
T ss_pred             hhccCcccchhhcc--cccCcccceEEeccCceEEEEehhhhhcCCcc------------hhhheeccccee-----ecc
Confidence              468999999999  99999999999999999999999999999886            578999999998     999


Q ss_pred             cccCCCCCCCEEEEcCCceeeeeccC
Q 047036          607 FAVTDSPEAPLVVATPMKVSSISLSG  632 (634)
Q Consensus       607 f~~~~~~~~~iivA~~~~v~~~~~~~  632 (634)
                      |+||.  |++||||||+||+|+++++
T Consensus       733 FeFG~--D~~vIValpDDV~~v~v~s  756 (776)
T COG5167         733 FEFGE--DSNVIVALPDDVRKVNVRS  756 (776)
T ss_pred             ccccC--CcceEEEccchhhhhhhhh
Confidence            99996  4899999999999999876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9.1e-34  Score=289.45  Aligned_cols=280  Identities=17%  Similarity=0.252  Sum_probs=215.1

Q ss_pred             CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+.....-| ||+++++.|   ..|=+|+...+--+    .-.+.+|   +|..    --+-.+.|+++|++++.|    
T Consensus        47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----~~~lkgH---sgAV----M~l~~~~d~s~i~S~gtD----  111 (338)
T KOG0265|consen   47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----FWVLKGH---SGAV----MELHGMRDGSHILSCGTD----  111 (338)
T ss_pred             cceEEEEEECCCCCeEeecCCcceEEEEeccccccc----eeeeccc---ccee----EeeeeccCCCEEEEecCC----
Confidence            344666667 777777764   46666775332111    1123344   1111    112235677889999987    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                        ++|+.||++||++++++++|.+-|    +++.|...+     .+++.||++|+|+|+||+|.+.+ ++++        
T Consensus       112 --k~v~~wD~~tG~~~rk~k~h~~~v----Ns~~p~rrg-----~~lv~SgsdD~t~kl~D~R~k~~-~~t~--------  171 (338)
T KOG0265|consen  112 --KTVRGWDAETGKRIRKHKGHTSFV----NSLDPSRRG-----PQLVCSGSDDGTLKLWDIRKKEA-IKTF--------  171 (338)
T ss_pred             --ceEEEEecccceeeehhcccccee----eecCccccC-----CeEEEecCCCceEEEEeecccch-hhcc--------
Confidence              799999999999999999999854    455575443     25899999999999999998764 4554        


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL  488 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL  488 (634)
                              ..++++++++|...+ .+.+|+.|+.|++||++.. ....+|.||.|+|++|..||+|.+|++ ++|++|++
T Consensus       172 --------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv  242 (338)
T KOG0265|consen  172 --------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV  242 (338)
T ss_pred             --------ccceeEEEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEE
Confidence                    246788999999988 8999999999999998764 477899999999999999999999999 99999999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      ||+++              +   .|.-|+|++...|.|.  .+++..++.|+++      .+.|.+ |.|++|+|||...
T Consensus       243 wd~rp--------------~---~p~~R~v~if~g~~hn--feknlL~cswsp~------~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  243 WDVRP--------------F---APSQRCVKIFQGHIHN--FEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             EEecc--------------c---CCCCceEEEeecchhh--hhhhcceeeccCC------CCccccccccceEEEeeccc
Confidence            99874              2   2666889988888875  4678889989863      356655 8899999999752


Q ss_pred             hhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc--ccCCCCCCCEEEE
Q 047036          568 VKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF--AVTDSPEAPLVVA  620 (634)
Q Consensus       568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f--~~~~~~~~~iivA  620 (634)
                         ..             .-|++++|..+|+.++| |+..  ..+|++|+.|.+.
T Consensus       298 ---r~-------------~lyklpGh~gsvn~~~F-hp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  298 ---RR-------------ILYKLPGHYGSVNEVDF-HPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             ---cc-------------EEEEcCCcceeEEEeee-cCCCcEEEEeccCceeEee
Confidence               11             24999999999999999 8876  4478889998864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=264.85  Aligned_cols=267  Identities=16%  Similarity=0.186  Sum_probs=211.6

Q ss_pred             EEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      +|.|+. ||+..++.|.   .|.+|.-..++..+    -.|.+| +++.+.+|.|-+.   ..++++|.+++.|      
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g----~~l~gH~K~It~Lawep~hl---~p~~r~las~skD------  226 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG----RALRGHKKWITALAWEPLHL---VPPCRRLASSSKD------  226 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCccc----ccccCcccceeEEeeccccc---CCCccceecccCC------
Confidence            999999 9999999985   67777755555332    346777 5668999999874   5677767776665      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|++||+.-|+++..+.||+..|  +++.+..+         .+|+|||.|+|||+|+...+. ++.+|.||..+|++.
T Consensus       227 g~vrIWd~~~~~~~~~lsgHT~~V--TCvrwGG~---------gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~l  294 (480)
T KOG0271|consen  227 GSVRIWDTKLGTCVRTLSGHTASV--TCVRWGGE---------GLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHL  294 (480)
T ss_pred             CCEEEEEccCceEEEEeccCccce--EEEEEcCC---------ceEEecCCCceEEEEEccchh-HHHhhcccchheeee
Confidence            799999999999999999999987  45577654         599999999999999998754 468999999999877


Q ss_pred             ccccccccCcceEEEEECCCC--------------------------eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          413 TQGHQFSRGTNFQCFASTGDG--------------------------SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG--------------------------~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      +...+|+.    ..-||.+-|                          +++|||.|+++-||+....+++++.+.||..-|
T Consensus       295 alsTdy~L----Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  295 ALSTDYVL----RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eccchhhh----hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence            76666652    222333322                          599999999999999765556778899999999


Q ss_pred             EEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccC
Q 047036          467 THVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTEN  545 (634)
Q Consensus       467 tsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~  545 (634)
                      ++|.|||||+|||| |.|+.|+|||.+    +|+.+..|.||++..               +   .+     .|+     
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~----tGk~lasfRGHv~~V---------------Y---qv-----aws-----  418 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGR----TGKFLASFRGHVAAV---------------Y---QV-----AWS-----  418 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCC----Ccchhhhhhhcccee---------------E---EE-----Eec-----
Confidence            99999999999999 999999999976    899999999999632               1   23     233     


Q ss_pred             CCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          546 GKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       546 g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                       .+-++||+ |.|.++.||++++   .++.             |.+++|.++|-.+..
T Consensus       419 -aDsRLlVS~SkDsTLKvw~V~t---kKl~-------------~DLpGh~DEVf~vDw  459 (480)
T KOG0271|consen  419 -ADSRLLVSGSKDSTLKVWDVRT---KKLK-------------QDLPGHADEVFAVDW  459 (480)
T ss_pred             -cCccEEEEcCCCceEEEEEeee---eeec-------------ccCCCCCceEEEEEe
Confidence             12478888 6799999999974   2232             689999999887766

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-28  Score=246.97  Aligned_cols=237  Identities=17%  Similarity=0.213  Sum_probs=180.8

Q ss_pred             cEEEeeeCCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGALDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ..||.-..+..+++.   +.+|=+|++..+...+-.....|.||.. +..+..        ..|+++.|+++.|      
T Consensus        19 t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~--------s~dg~~alS~swD------   84 (315)
T KOG0279|consen   19 TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL--------SSDGNFALSASWD------   84 (315)
T ss_pred             EEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE--------ccCCceEEecccc------
Confidence            345544455666664   5677889987666555445566777631 233333        4566788888886      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +++|+||+++|+..+.|.||+..|  ..++|+||        +++|+|||.|+||++|++... | ..++..++.     
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dV--lsva~s~d--------n~qivSGSrDkTiklwnt~g~-c-k~t~~~~~~-----  147 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDV--LSVAFSTD--------NRQIVSGSRDKTIKLWNTLGV-C-KYTIHEDSH-----  147 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCce--EEEEecCC--------CceeecCCCcceeeeeeeccc-E-EEEEecCCC-----
Confidence            799999999999999999999988  34599999        689999999999999999753 3 234433220     


Q ss_pred             ccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL  488 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL  488 (634)
                              ..-++|+.|+|+  . +|+++|.|+++|+||+.+. +.++.++||+..|+.|+|||||..+++ +.|+.++|
T Consensus       148 --------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L  218 (315)
T KOG0279|consen  148 --------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML  218 (315)
T ss_pred             --------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence                    223689999997  3 7999999999999999987 488999999999999999999999999 89999999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      ||+.    .|+++..|. |+.               .   ...+.|+|.           +.+|+++++..|+|||++.
T Consensus       219 wdL~----~~k~lysl~-a~~---------------~---v~sl~fspn-----------rywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  219 WDLN----EGKNLYSLE-AFD---------------I---VNSLCFSPN-----------RYWLCAATATSIKIWDLES  263 (315)
T ss_pred             EEcc----CCceeEecc-CCC---------------e---EeeEEecCC-----------ceeEeeccCCceEEEeccc
Confidence            9986    566554443 221               0   124666666           3589999999999999973

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=5e-27  Score=262.36  Aligned_cols=273  Identities=15%  Similarity=0.190  Sum_probs=203.5

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCc------------e--------------ecceeEEEecCC-CCCcccccC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRG------------I--------------HNKGVSVRFDGG-SSKIGSNST  306 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~g------------l--------------~~~~~~~~~~~~-~~~~g~~fs  306 (634)
                      +-+.++ .|.+.++-|   +.|.||...+..            +              ...+....+.|| .|+-|+.|+
T Consensus       381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs  460 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS  460 (707)
T ss_pred             ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence            556666 788888876   799999876311            0              111223335565 345566666


Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |+        ++.||+++.|      .+||||.+.|-.++-.++||...|  +.|.|+|-        |-++||||.|+|
T Consensus       461 Pd--------~rfLlScSED------~svRLWsl~t~s~~V~y~GH~~PV--wdV~F~P~--------GyYFatas~D~t  516 (707)
T KOG0263|consen  461 PD--------RRFLLSCSED------SSVRLWSLDTWSCLVIYKGHLAPV--WDVQFAPR--------GYYFATASHDQT  516 (707)
T ss_pred             cc--------ccceeeccCC------cceeeeecccceeEEEecCCCcce--eeEEecCC--------ceEEEecCCCce
Confidence            55        4667888765      799999999999999999999875  78899997        679999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP  465 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~  465 (634)
                      .++|.... ..+.+.+.||.+               .+.|+.|.|+. |+|+||.|.++|+||+.++. ..+.|.||..|
T Consensus       517 ArLWs~d~-~~PlRifaghls---------------DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~  579 (707)
T KOG0263|consen  517 ARLWSTDH-NKPLRIFAGHLS---------------DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGP  579 (707)
T ss_pred             eeeeeccc-CCchhhhccccc---------------ccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCc
Confidence            99999764 334566777654               35799999998 99999999999999999984 78899999999


Q ss_pred             eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036          466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE  544 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~  544 (634)
                      |++|+|||+|+||+| +.|+.|+|||+.    .|+.+..|.||.+.                  +..+.|++.       
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~t------------------i~SlsFS~d-------  630 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGT------------------IYSLSFSRD-------  630 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcC----CCcchhhhhcccCc------------------eeEEEEecC-------
Confidence            999999999999999 999999999985    68888889999642                  246788766       


Q ss_pred             CCCCceEEEEEcCCeEEEEeChhhhcc-------cccccccccCC-cceeeEEEeccCCCeeeeccc
Q 047036          545 NGKQERHLVATVGKFSVIWDFQQVKNS-------AHECYRNQQGL-KSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       545 ~g~~E~~IvtStg~~viiWdl~~v~~~-------~~~~y~~~~~~-~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                       |  .-.++++.|..|.+||+.++...       ....++.++.. .+..--.+.-+...|+.+.|.
T Consensus       631 -g--~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ft  694 (707)
T KOG0263|consen  631 -G--NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFT  694 (707)
T ss_pred             -C--CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEe
Confidence             3  23445578999999999987754       11122333332 222223445566677767663

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.3e-26  Score=241.19  Aligned_cols=231  Identities=12%  Similarity=0.144  Sum_probs=187.3

Q ss_pred             CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      |+.++.|++        |+++|++++-.      +++++|.+.++..+++|.||+..|  ..+.|+|...      +..+
T Consensus       177 Pis~~~fS~--------ds~~laT~sws------G~~kvW~~~~~~~~~~l~gH~~~v--~~~~fhP~~~------~~~l  234 (459)
T KOG0272|consen  177 PISGCSFSR--------DSKHLATGSWS------GLVKVWSVPQCNLLQTLRGHTSRV--GAAVFHPVDS------DLNL  234 (459)
T ss_pred             cceeeEeec--------CCCeEEEeecC------CceeEeecCCcceeEEEeccccce--eeEEEccCCC------ccce
Confidence            345555554        45667777775      799999999999999999999986  4569999732      4689


Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                      |||+.|+++++|++.... +++.|.||...               +..|+|.|+| +|++||.|.+-||||+.+. ....
T Consensus       235 at~s~Dgtvklw~~~~e~-~l~~l~gH~~R---------------Vs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL  297 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQET-PLQDLEGHLAR---------------VSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELL  297 (459)
T ss_pred             eeeccCCceeeeccCCCc-chhhhhcchhh---------------heeeeecCCCceeeecccccchhhcccccc-hhhH
Confidence            999999999999998754 56888777643               5788999999 8999999999999999986 4566


Q ss_pred             cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccc
Q 047036          458 AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHG  536 (634)
Q Consensus       458 ~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~  536 (634)
                      ..+||..+|.+|+|.|||..+++ +.|.+-||||++    +|+++..|.||..+.                  ..++|+|
T Consensus       298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I------------------~~V~fsP  355 (459)
T KOG0272|consen  298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEI------------------LSVAFSP  355 (459)
T ss_pred             hhcccccccceeEecCCCceeeccCccchhheeecc----cCcEEEEecccccce------------------eeEeECC
Confidence            77899999999999999999999 999999999997    899999999998532                  3588888


Q ss_pred             ccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc--cCccccCCCC
Q 047036          537 GHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM--HDKFAVTDSP  613 (634)
Q Consensus       537 a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~--~d~f~~~~~~  613 (634)
                      +        |   ..|+| |.|+.+.||||++...                .|.|+.|..-|.+|.|-  +.+|-..++=
T Consensus       356 N--------G---y~lATgs~Dnt~kVWDLR~r~~----------------ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  356 N--------G---YHLATGSSDNTCKVWDLRMRSE----------------LYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             C--------c---eEEeecCCCCcEEEeeeccccc----------------ceecccccchhhheEecccCCeEEEEccc
Confidence            8        4   46666 7799999999985332                48999999999999994  2344444443


Q ss_pred             CCCE
Q 047036          614 EAPL  617 (634)
Q Consensus       614 ~~~i  617 (634)
                      |..+
T Consensus       409 D~t~  412 (459)
T KOG0272|consen  409 DNTV  412 (459)
T ss_pred             Ccce
Confidence            4443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.6e-26  Score=240.96  Aligned_cols=254  Identities=13%  Similarity=0.086  Sum_probs=193.6

Q ss_pred             cEEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ...++.+ .|...++.|+   ...||......     ....|.||+. ..+..|.|.-      +..-|++++.|     
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----~~~~l~gH~~~v~~~~fhP~~------~~~~lat~s~D-----  240 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----LLQTLRGHTSRVGAAVFHPVD------SDLNLATASAD-----  240 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCcc-----eeEEEeccccceeeEEEccCC------CccceeeeccC-----
Confidence            3555555 7888888875   66777765532     4557888854 3778888874      23345666664     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       +++++|++.+...+..|.||...|  .-|+|+|+        |+.|+|+|.|.|-++||++++..+ ....||+..   
T Consensus       241 -gtvklw~~~~e~~l~~l~gH~~RV--s~VafHPs--------G~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~---  305 (459)
T KOG0272|consen  241 -GTVKLWKLSQETPLQDLEGHLARV--SRVAFHPS--------GKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKG---  305 (459)
T ss_pred             -CceeeeccCCCcchhhhhcchhhh--eeeeecCC--------Cceeeecccccchhhcccccchhh-Hhhcccccc---
Confidence             799999999999999999999876  45699999        678999999999999999997653 234466554   


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                                  +.+++|.+|| .+++||.|..-||||++++| +...|.||..+|.+|+|||+|..||+ |.|++++||
T Consensus       306 ------------v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW  372 (459)
T KOG0272|consen  306 ------------VFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW  372 (459)
T ss_pred             ------------cceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence                        4678999999 68899999999999999996 78889999999999999999999999 999999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQV  568 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v  568 (634)
                      |++..                     +.|-+-|.|... ...+.|.|.       .|   ..|+| |-|+.+.||+-+. 
T Consensus       373 DLR~r---------------------~~ly~ipAH~nl-VS~Vk~~p~-------~g---~fL~TasyD~t~kiWs~~~-  419 (459)
T KOG0272|consen  373 DLRMR---------------------SELYTIPAHSNL-VSQVKYSPQ-------EG---YFLVTASYDNTVKIWSTRT-  419 (459)
T ss_pred             eeccc---------------------ccceecccccch-hhheEeccc-------CC---eEEEEcccCcceeeecCCC-
Confidence            98731                     124445666533 134666663       14   56766 6799999998652 


Q ss_pred             hcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          569 KNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       569 ~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                        .++-             =++.+|++.|..+..
T Consensus       420 --~~~~-------------ksLaGHe~kV~s~Di  438 (459)
T KOG0272|consen  420 --WSPL-------------KSLAGHEGKVISLDI  438 (459)
T ss_pred             --cccc-------------hhhcCCccceEEEEe
Confidence              2111             257888888887776

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.1e-25  Score=218.08  Aligned_cols=268  Identities=18%  Similarity=0.275  Sum_probs=189.3

Q ss_pred             CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+-++||-| -|+.|++.+   .+|++|.... |.    .+.++++|    |...- +.  ...-|...+.+++.|    
T Consensus        17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~----liktYsgh----G~EVl-D~--~~s~Dnskf~s~GgD----   80 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GA----LIKTYSGH----GHEVL-DA--ALSSDNSKFASCGGD----   80 (307)
T ss_pred             ccceEEEEEccCCCEEEEcCCCceEEeecccc-cc----eeeeecCC----Cceee-ec--cccccccccccCCCC----
Confidence            345999999 799999974   6888887544 42    34455564    22111 00  112344557777776    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V  409 (634)
                        +.|.+||++|||++++|.||...|+  .+.|+-+        ...++|||.|.+|++||.|++. .+||.|....+. 
T Consensus        81 --k~v~vwDV~TGkv~Rr~rgH~aqVN--tV~fNee--------sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-  147 (307)
T KOG0316|consen   81 --KAVQVWDVNTGKVDRRFRGHLAQVN--TVRFNEE--------SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-  147 (307)
T ss_pred             --ceEEEEEcccCeeeeecccccceee--EEEecCc--------ceEEEeccccceeEEEEcccCCCCccchhhhhcCc-
Confidence              6899999999999999999999875  5599876        5799999999999999999874 578887643332 


Q ss_pred             cccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL  488 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL  488 (634)
                                    ++++..+ +..|+.||.||++|.||++.++ .  .-.-.++||++|+||+||+.+|+ +.|++|||
T Consensus       148 --------------V~Si~v~-~heIvaGS~DGtvRtydiR~G~-l--~sDy~g~pit~vs~s~d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  148 --------------VSSIDVA-EHEIVAGSVDGTVRTYDIRKGT-L--SSDYFGHPITSVSFSKDGNCSLASSLDSTLRL  209 (307)
T ss_pred             --------------eeEEEec-ccEEEeeccCCcEEEEEeecce-e--ehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence                          3444332 3369999999999999976653 2  22346789999999999999998 89999999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      .|-.    +|+.+..|.||....                    .. ..++|+.      .+.++++ |.|++|++|||..
T Consensus       210 lDk~----tGklL~sYkGhkn~e--------------------yk-ldc~l~q------sdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  210 LDKE----TGKLLKSYKGHKNME--------------------YK-LDCCLNQ------SDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             cccc----hhHHHHHhcccccce--------------------ee-eeeeecc------cceeEEeccCCceEEEEEecc
Confidence            9954    799999999997521                    11 2456652      2345555 7899999999974


Q ss_pred             hhcccccccccccCCcceeeEEEeccCCC-eeeeccccCccccCCCCCCCEEEEcCCc
Q 047036          568 VKNSAHECYRNQQGLKSCYCYKIVLKDES-IVESRFMHDKFAVTDSPEAPLVVATPMK  624 (634)
Q Consensus       568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~-i~~~~f~~d~f~~~~~~~~~iivA~~~~  624 (634)
                      ...-                -++...... |.+..| |+.-       ..+|+|+-+-
T Consensus       259 ~~~~----------------sk~~~~~~v~v~dl~~-hp~~-------~~f~~A~~~~  292 (307)
T KOG0316|consen  259 ETQI----------------SKLSVVSTVIVTDLSC-HPTM-------DDFITATGHG  292 (307)
T ss_pred             ceee----------------eeeccCCceeEEeeec-ccCc-------cceeEecCCc
Confidence            3321                244455554 556666 6544       2556666543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.2e-25  Score=230.85  Aligned_cols=239  Identities=17%  Similarity=0.209  Sum_probs=186.2

Q ss_pred             CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      +.-+|.+.| ++++.++.|   .++++|.....     +......+|. ++..++++|++..        |.+++.|   
T Consensus       115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~--------iASG~~d---  178 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKK--------IASGSKD---  178 (480)
T ss_pred             CCcEEEEEecCCCceEEecCCCceEEeeccCCC-----CcceeecCCccEEEEEEECCCcch--------hhccccC---
Confidence            445999999 999999987   48888986554     2455667774 4578888888754        4445544   


Q ss_pred             CCCCcEEEEeCCCCcEE-EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          330 PQAPGVQQLDIETGKIV-TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V-~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                         ++|++||.++|+.+ +.|.||+..+  ..++|-|--..   ++++.+||+|-||+|+|||+..+.+ +..+.||..+
T Consensus       179 ---g~I~lwdpktg~~~g~~l~gH~K~I--t~Lawep~hl~---p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~  249 (480)
T KOG0271|consen  179 ---GSIRLWDPKTGQQIGRALRGHKKWI--TALAWEPLHLV---PPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTAS  249 (480)
T ss_pred             ---CeEEEecCCCCCcccccccCcccce--eEEeecccccC---CCccceecccCCCCEEEEEccCceE-EEEeccCccc
Confidence               79999999998765 6799999985  56699884222   2357999999999999999988765 6778777654


Q ss_pred             ccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC-----------CCCCE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT-----------YDGKW  477 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS-----------pDGk~  477 (634)
                                     ++|+..-.+|+|+|||.|++||+|+...++ +...|.||+.+|++|++|           |-|++
T Consensus       250 ---------------VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~  313 (480)
T KOG0271|consen  250 ---------------VTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK  313 (480)
T ss_pred             ---------------eEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhcccccccccc
Confidence                           589999999999999999999999998875 778899999999999998           34555


Q ss_pred             -------------------------EEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          478 -------------------------ILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       478 -------------------------LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                                               |+| |.|.++.||+..   ..-+++...+||...                  .+.
T Consensus       314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmtgHq~l------------------Vn~  372 (480)
T KOG0271|consen  314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMTGHQAL------------------VNH  372 (480)
T ss_pred             CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhhchhhh------------------eee
Confidence                                     999 889999999954   233455556666531                  134


Q ss_pred             cccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          532 NKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      +.|+|+        +   ++|++ |-|+.|.+|+-.
T Consensus       373 V~fSPd--------~---r~IASaSFDkSVkLW~g~  397 (480)
T KOG0271|consen  373 VSFSPD--------G---RYIASASFDKSVKLWDGR  397 (480)
T ss_pred             EEECCC--------c---cEEEEeecccceeeeeCC
Confidence            677777        4   78877 679999999976

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=218.74  Aligned_cols=207  Identities=18%  Similarity=0.203  Sum_probs=160.7

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceec-ceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHN-KGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~-~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      +++.+| |-+.||+-|   ++--||......-++ ..+...|.+|+. ...+.|.++         +.||+++.|     
T Consensus       100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---------~~ilT~SGD-----  165 (343)
T KOG0286|consen  100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---------NHILTGSGD-----  165 (343)
T ss_pred             EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC---------CceEecCCC-----
Confidence            789999 999999976   677788875321111 112334667732 345555543         346666665     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       .|+.+||+++|+.++.|.||...|  -.++++|..       ++.++||+-|++.++||+|.+.+ +|++.||.+    
T Consensus       166 -~TCalWDie~g~~~~~f~GH~gDV--~slsl~p~~-------~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghes----  230 (343)
T KOG0286|consen  166 -MTCALWDIETGQQTQVFHGHTGDV--MSLSLSPSD-------GNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHES----  230 (343)
T ss_pred             -ceEEEEEcccceEEEEecCCcccE--EEEecCCCC-------CCeEEecccccceeeeeccCcce-eEeeccccc----
Confidence             799999999999999999999987  345999941       68999999999999999999865 799987765    


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                                 .+.+|+|.|+| -+|+||.|+++||||++..+ ....+.  .--.+|++|+||..||+|.+ -.|.++.
T Consensus       231 -----------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~  298 (343)
T KOG0286|consen  231 -----------DINSVRFFPSGDAFATGSDDATCRLYDLRADQ-ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN  298 (343)
T ss_pred             -----------ccceEEEccCCCeeeecCCCceeEEEeecCCc-EEeeeccCcccCCceeEEEcccccEEEeeecCCcee
Confidence                       35789999999 69999999999999987653 233332  34468999999999999999 7899999


Q ss_pred             EEEcccccCCCCeeeeecCCCC
Q 047036          488 LICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~  509 (634)
                      +||+.    +|+-...+.||-+
T Consensus       299 vWDtl----k~e~vg~L~GHeN  316 (343)
T KOG0286|consen  299 VWDTL----KGERVGVLAGHEN  316 (343)
T ss_pred             Eeecc----ccceEEEeeccCC
Confidence            99986    7887778888875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=9.9e-24  Score=232.27  Aligned_cols=238  Identities=18%  Similarity=0.255  Sum_probs=176.8

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ....+.+ +|+.+++.+   ..|.+|......  . +...++.+| ..+..++|+|++.        .|++++.|     
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~--~-~~~~~l~~h~~~v~~~~fs~d~~--------~l~s~s~D-----  224 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIK--S-NLLRELSGHTRGVSDVAFSPDGS--------YLLSGSDD-----  224 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCcEEEeeccccc--c-hhhccccccccceeeeEECCCCc--------EEEEecCC-----
Confidence            3455666 788777765   577777762211  0 122333444 2346777877764        45666654     


Q ss_pred             CCcEEEEeC-CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          332 APGVQQLDI-ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       332 ~~TIrlWDl-eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                       ++||+||+ ..|+++++++||...|  ..++|+|+        +++++||+.|++||+||++++. ++..|.+|.++  
T Consensus       225 -~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~--------g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~--  290 (456)
T KOG0266|consen  225 -KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPD--------GNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG--  290 (456)
T ss_pred             -ceEEEeeccCCCeEEEEecCCCCce--EEEEecCC--------CCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc--
Confidence             79999999 6679999999999987  45699998        6899999999999999999854 56888877764  


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc-ccccccCCCCC--eEEEEECCCCCEEEE-EcCCc
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ-AKTAFPGLGSP--ITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~-akt~L~GH~d~--ItsVdfSpDGk~LlS-S~D~t  485 (634)
                                   +++++|+++| +|++||.||.||+||+.++.. +...+.++..+  ++++.|||+|++|++ +.|++
T Consensus       291 -------------is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~  357 (456)
T KOG0266|consen  291 -------------ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT  357 (456)
T ss_pred             -------------eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence                         5789999999 799999999999999988632 24567776655  999999999999999 88899


Q ss_pred             EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEe
Q 047036          486 LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWD  564 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWd  564 (634)
                      |++||+.    .+.+...+.+|....    ++.               |.+..+   ++ |   .+|++ +.|..|.+||
T Consensus       358 ~~~w~l~----~~~~~~~~~~~~~~~----~~~---------------~~~~~~---~~-~---~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  358 LKLWDLR----SGKSVGTYTGHSNLV----RCI---------------FSPTLS---TG-G---KLIYSGSEDGSVYVWD  407 (456)
T ss_pred             EEEEEcc----CCcceeeecccCCcc----eeE---------------eccccc---CC-C---CeEEEEeCCceEEEEe
Confidence            9999986    688888888887420    111               111111   21 3   56666 6799999999


Q ss_pred             Chh
Q 047036          565 FQQ  567 (634)
Q Consensus       565 l~~  567 (634)
                      +..
T Consensus       408 ~~s  410 (456)
T KOG0266|consen  408 SSS  410 (456)
T ss_pred             CCc
Confidence            984

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.91  E-value=2e-23  Score=233.72  Aligned_cols=192  Identities=15%  Similarity=0.181  Sum_probs=162.1

Q ss_pred             CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      .+-+.-+.+ +|+.|++.+   ..+++|-....     +..+.++|| -|+--+.|+|-+-         .+++.+    
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-----s~~V~y~GH~~PVwdV~F~P~Gy---------YFatas----  512 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-----SCLVIYKGHLAPVWDVQFAPRGY---------YFATAS----  512 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccc-----eeEEEecCCCcceeeEEecCCce---------EEEecC----
Confidence            445777777 999999986   58999987553     356677787 3445567777763         333333    


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                       ||+|.|+|....-+.+|.|.||-..|.  +++|+|+        +.++|+||.|+|||+||+.++.. |+.+.||.++ 
T Consensus       513 -~D~tArLWs~d~~~PlRifaghlsDV~--cv~FHPN--------s~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~-  579 (707)
T KOG0263|consen  513 -HDQTARLWSTDHNKPLRIFAGHLSDVD--CVSFHPN--------SNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGP-  579 (707)
T ss_pred             -CCceeeeeecccCCchhhhcccccccc--eEEECCc--------ccccccCCCCceEEEEEcCCCcE-EEEecCCCCc-
Confidence             348999999999999999999999985  6699998        68999999999999999998764 7888888765 


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                                    ++|++++|+| +||+|+.||.|+|||+.+++ ...+|.||.+.|.+|.||.||..||+ +.|++|+
T Consensus       580 --------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~  644 (707)
T KOG0263|consen  580 --------------VTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR  644 (707)
T ss_pred             --------------eEEEEEcCCCceEeecccCCcEEEEEcCCCc-chhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence                          5899999999 89999999999999999875 77889999999999999999999999 9999999


Q ss_pred             EEEcc
Q 047036          488 LICTL  492 (634)
Q Consensus       488 LWD~~  492 (634)
                      |||+.
T Consensus       645 lWD~~  649 (707)
T KOG0263|consen  645 LWDLT  649 (707)
T ss_pred             EEEch
Confidence            99976

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=222.51  Aligned_cols=191  Identities=19%  Similarity=0.277  Sum_probs=150.2

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      ++.+++++.+      +++++|++.+++  .++++.+|...|  .-++|+|+        +..+++|+.|++||+||+..
T Consensus       171 g~~l~~~~~~------~~i~~~~~~~~~~~~~~~l~~h~~~v--~~~~fs~d--------~~~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  171 GRALAAASSD------GLIRIWKLEGIKSNLLRELSGHTRGV--SDVAFSPD--------GSYLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             CCeEEEccCC------CcEEEeecccccchhhccccccccce--eeeEECCC--------CcEEEEecCCceEEEeeccC
Confidence            3445555554      699999999999  889999999987  46699999        67999999999999999966


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp  473 (634)
                      .+..++++.||...               ++|++|+|+| .|+|||.|++|||||+.++ .++..|.+|.++|++|+|++
T Consensus       235 ~~~~~~~l~gH~~~---------------v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTY---------------VTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             CCeEEEEecCCCCc---------------eEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC
Confidence            65667899888754               4789999999 8999999999999999987 48899999999999999999


Q ss_pred             CCCEEEE-EcCCcEEEEEcccccCCCC--eeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036          474 DGKWILG-TTDTYLILICTLFSDKDGK--TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER  550 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD~~~~~~~G~--~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~  550 (634)
                      ||++|++ +.|+.|+|||+.    +|.  ++..+.++...                    . ..+-..|++.   +  ..
T Consensus       299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~--------------------~-~~~~~~fsp~---~--~~  348 (456)
T KOG0266|consen  299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENS--------------------A-PVTSVQFSPN---G--KY  348 (456)
T ss_pred             CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCC--------------------C-ceeEEEECCC---C--cE
Confidence            9999999 889999999986    454  33334433321                    0 2233445441   3  33


Q ss_pred             EEEEEcCCeEEEEeChhhh
Q 047036          551 HLVATVGKFSVIWDFQQVK  569 (634)
Q Consensus       551 ~IvtStg~~viiWdl~~v~  569 (634)
                      .++++.|+.+.+||+....
T Consensus       349 ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  349 LLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             EEEecCCCeEEEEEccCCc
Confidence            4455668899999998543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-21  Score=198.39  Aligned_cols=183  Identities=11%  Similarity=0.142  Sum_probs=141.4

Q ss_pred             CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEe
Q 047036          264 LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLD  339 (634)
Q Consensus       264 ~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWD  339 (634)
                      +|++|.+.+   .++++|....+.     ....|.||+ .+.+++|+|+.        ++|++++.|      +||++|+
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~-----~t~~f~GH~~dVlsva~s~dn--------~qivSGSrD------kTiklwn  133 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGE-----STRRFVGHTKDVLSVAFSTDN--------RQIVSGSRD------KTIKLWN  133 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCc-----EEEEEEecCCceEEEEecCCC--------ceeecCCCc------ceeeeee
Confidence            688888876   477778765532     344677873 34677777665        567777765      7999999


Q ss_pred             CCCCcEEEEEecc--CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036          340 IETGKIVTEWKFE--KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ  417 (634)
Q Consensus       340 leTGK~V~~lkgH--~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~  417 (634)
                      +- |.+.-+...+  .+.|  +.+.|+|...      ...|+++|.|++||+||++.- ++.+++.||++-         
T Consensus       134 t~-g~ck~t~~~~~~~~WV--scvrfsP~~~------~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~---------  194 (315)
T KOG0279|consen  134 TL-GVCKYTIHEDSHREWV--SCVRFSPNES------NPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGY---------  194 (315)
T ss_pred             ec-ccEEEEEecCCCcCcE--EEEEEcCCCC------CcEEEEccCCceEEEEccCCc-chhhcccccccc---------
Confidence            98 5555555444  6776  5679999731      358999999999999999863 344566665542         


Q ss_pred             cccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          418 FSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       418 y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                            ++.+++|||| .+|+|+.||.+.|||+..++ ....|+ |.++|.+++|||+--||++..+..|+|||+.
T Consensus       195 ------v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  195 ------VNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-NLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE  262 (315)
T ss_pred             ------EEEEEECCCCCEEecCCCCceEEEEEccCCc-eeEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence                  5788999999 68999999999999998765 556665 8999999999999888888889999999976

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.9e-23  Score=212.85  Aligned_cols=247  Identities=16%  Similarity=0.205  Sum_probs=191.2

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      +|...+++.+...++++++.|      .||++||.+||++++.++||++.|. . ++|+..        |.+++++|.|=
T Consensus       109 ~~vt~v~~hp~~~~v~~as~d------~tikv~D~~tg~~e~~LrGHt~sv~-d-i~~~a~--------Gk~l~tcSsDl  172 (406)
T KOG0295|consen  109 SSVTRVIFHPSEALVVSASED------ATIKVFDTETGELERSLRGHTDSVF-D-ISFDAS--------GKYLATCSSDL  172 (406)
T ss_pred             cceeeeeeccCceEEEEecCC------ceEEEEEccchhhhhhhhcccccee-E-EEEecC--------ccEEEecCCcc
Confidence            445555555555556666554      6999999999999999999999873 4 478766        57899999999


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS  464 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d  464 (634)
                      .+++||...-..+++.+.||.               ..++|++|-|.| +|+|+|.|.+|+.|+..++ -++.+|+||..
T Consensus       173 ~~~LWd~~~~~~c~ks~~gh~---------------h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~e  236 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIKSLIGHE---------------HGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSE  236 (406)
T ss_pred             chhheeHHHHHHHHHHhcCcc---------------cceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchH
Confidence            999999976322345555543               346899999988 9999999999999999998 49999999999


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      +|..|+++.||..||| +.|.+|++|-+.    +++|+..|.+|.-    +..++.+.|+-..   .++++-       |
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh----~vEci~wap~~~~---~~i~~a-------t  298 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEH----PVECIAWAPESSY---PSISEA-------T  298 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEec----cchhhhhhhcccc----ceEEEEecccccC---cchhhc-------c
Confidence            9999999999999999 999999999975    6778888888863    2245666666441   123322       2


Q ss_pred             cCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc--CccccCCCCCCCEEE
Q 047036          544 ENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH--DKFAVTDSPEAPLVV  619 (634)
Q Consensus       544 ~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~--d~f~~~~~~~~~iiv  619 (634)
                      +.++.-+.+++ |-|+.+.+||+..   |.            |. +.|+.|++=|-++.| |  .+|.++|..|+.|=|
T Consensus       299 ~~~~~~~~l~s~SrDktIk~wdv~t---g~------------cL-~tL~ghdnwVr~~af-~p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  299 GSTNGGQVLGSGSRDKTIKIWDVST---GM------------CL-FTLVGHDNWVRGVAF-SPGGKYILSCADDKTLRV  360 (406)
T ss_pred             CCCCCccEEEeecccceEEEEeccC---Ce------------EE-EEEecccceeeeeEE-cCCCeEEEEEecCCcEEE
Confidence            22223355555 7899999999873   32            33 899999999999999 7  789999887887644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=1.2e-20  Score=220.09  Aligned_cols=242  Identities=17%  Similarity=0.177  Sum_probs=164.7

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccC---CceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYN---RGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~---~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      +.+.++++ +|+.+++.|   .+|.||....   .+...+.....+.++..+.+..|.|       ...++|++++.|  
T Consensus       484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~~~las~~~D--  554 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS-------YIKSQVASSNFE--  554 (793)
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEecc-------CCCCEEEEEeCC--
Confidence            34778888 888888765   5899998532   1111111122222221122333332       234567777665  


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          329 KPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       329 ~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                          ++|++||+.+++.+..+++|.+.|  ..++|+|..       +.+|+||+.|++|++||++++.+ +..+..    
T Consensus       555 ----g~v~lWd~~~~~~~~~~~~H~~~V--~~l~~~p~~-------~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~----  616 (793)
T PLN00181        555 ----GVVQVWDVARSQLVTEMKEHEKRV--WSIDYSSAD-------PTLLASGSDDGSVKLWSINQGVS-IGTIKT----  616 (793)
T ss_pred             ----CeEEEEECCCCeEEEEecCCCCCE--EEEEEcCCC-------CCEEEEEcCCCEEEEEECCCCcE-EEEEec----
Confidence                799999999999999999999986  456999731       57999999999999999997654 444431    


Q ss_pred             ccccccccccccCcceEEEEE-CCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036          409 VLHWTQGHQFSRGTNFQCFAS-TGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~-s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                                  ...+.|+++ +++| +||+|+.||+|++||+...+.....+.+|..+|++|.|+ +|.+|++ +.|++
T Consensus       617 ------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~  683 (793)
T PLN00181        617 ------------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT  683 (793)
T ss_pred             ------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE
Confidence                        124567777 4567 799999999999999876433455788999999999997 7889998 99999


Q ss_pred             EEEEEccccc--CCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEE
Q 047036          486 LILICTLFSD--KDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVI  562 (634)
Q Consensus       486 IrLWD~~~~~--~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vii  562 (634)
                      |+|||+....  ..++.+..|.||....                  ..+.|++.        +   .+|++ +.|+.|.+
T Consensus       684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i------------------~~v~~s~~--------~---~~lasgs~D~~v~i  734 (793)
T PLN00181        684 LKLWDLSMSISGINETPLHSFMGHTNVK------------------NFVGLSVS--------D---GYIATGSETNEVFV  734 (793)
T ss_pred             EEEEeCCCCccccCCcceEEEcCCCCCe------------------eEEEEcCC--------C---CEEEEEeCCCEEEE
Confidence            9999986311  1234455566554210                  11333332        2   35555 77999999


Q ss_pred             EeCh
Q 047036          563 WDFQ  566 (634)
Q Consensus       563 Wdl~  566 (634)
                      |+..
T Consensus       735 w~~~  738 (793)
T PLN00181        735 YHKA  738 (793)
T ss_pred             EECC
Confidence            9965

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.88  E-value=1.4e-19  Score=173.06  Aligned_cols=253  Identities=14%  Similarity=0.186  Sum_probs=174.0

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ....++.+ +++.+++.|   ..|.+|......     ....+..|.       .+...+.+..+++.|++++.+     
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~~-----   72 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHT-------GPVRDVAASADGTYLASGSSD-----   72 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCC-------cceeEEEECCCCCEEEEEcCC-----
Confidence            34667777 676666654   477788765432     122233331       122234444555667777654     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+.+++.+..+.+|...+  ..+.|+|+        +.++++|+.|+.|++||++..+ .+..+..|.     
T Consensus        73 -~~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~-----  135 (289)
T cd00200          73 -KTIRLWDLETGECVRTLTGHTSYV--SSVAFSPD--------GRILSSSSRDKTIKVWDVETGK-CLTTLRGHT-----  135 (289)
T ss_pred             -CeEEEEEcCcccceEEEeccCCcE--EEEEEcCC--------CCEEEEecCCCeEEEEECCCcE-EEEEeccCC-----
Confidence             689999999999999999998765  45688887        4688888889999999998654 344554332     


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                                ..+.++++++++ +|++|+.||.|++||+.+++ ....+..|..+|++++|+|+|++|++ +.|+.|++|
T Consensus       136 ----------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  204 (289)
T cd00200         136 ----------DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW  204 (289)
T ss_pred             ----------CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence                      246888999987 67777779999999998653 66778899999999999999988888 779999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEc-CCeEEEEeChhh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATV-GKFSVIWDFQQV  568 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtSt-g~~viiWdl~~v  568 (634)
                      |+.    .++.+..|.+|...                  ...+.|.+.           ...++++. ++.+.+|++.. 
T Consensus       205 d~~----~~~~~~~~~~~~~~------------------i~~~~~~~~-----------~~~~~~~~~~~~i~i~~~~~-  250 (289)
T cd00200         205 DLS----TGKCLGTLRGHENG------------------VNSVAFSPD-----------GYLLASGSEDGTIRVWDLRT-  250 (289)
T ss_pred             ECC----CCceecchhhcCCc------------------eEEEEEcCC-----------CcEEEEEcCCCcEEEEEcCC-
Confidence            975    35554444433310                  012333332           24666655 99999999873 


Q ss_pred             hcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          569 KNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       569 ~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                        +..             ...+..+...|....|
T Consensus       251 --~~~-------------~~~~~~~~~~i~~~~~  269 (289)
T cd00200         251 --GEC-------------VQTLSGHTNSVTSLAW  269 (289)
T ss_pred             --cee-------------EEEccccCCcEEEEEE
Confidence              222             1345566677887776

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=1.5e-20  Score=209.61  Aligned_cols=252  Identities=17%  Similarity=0.205  Sum_probs=185.8

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      .-+++| +|+++++.|   .||.||....+-     .+++|.-|++       -+.++-+...++.|++++-|      +
T Consensus       353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts-------~Vt~v~f~~~g~~llssSLD------G  414 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTS-------GVTAVQFTARGNVLLSSSLD------G  414 (893)
T ss_pred             eeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCC-------ceEEEEEEecCCEEEEeecC------C
Confidence            456677 899999987   699999865542     5678877742       23344456677888888886      7


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-CeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-NRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      |||.||+.+++..|+|...... ..++++..|.        |++++.|+.| -.|++|++.+++ ++..|.||.+||   
T Consensus       415 tVRAwDlkRYrNfRTft~P~p~-QfscvavD~s--------GelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPV---  481 (893)
T KOG0291|consen  415 TVRAWDLKRYRNFRTFTSPEPI-QFSCVAVDPS--------GELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPV---  481 (893)
T ss_pred             eEEeeeecccceeeeecCCCce-eeeEEEEcCC--------CCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcc---
Confidence            9999999999999999988753 2345566665        7888888877 579999999975 568888887764   


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                                  ++++|+|.| .|||||.|.|||+||+-.......+|+ +...+++|+|+|||+-|+. |.|+.|-+||
T Consensus       482 ------------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  482 ------------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             ------------eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence                        788999999 799999999999999865322445565 6778999999999999998 9999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      +.    .+.......|+..-....-+.=+++.++..   ....|+.-+|+.+   |   .+|++ +.-++|+++++.
T Consensus       549 ~~----~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa---~~K~Ftti~ySaD---G---~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  549 IK----EAVQVGSIDGRKDLSGGRKETDRITAENSA---KGKTFTTICYSAD---G---KCILAGGESNSICIYDVP  612 (893)
T ss_pred             hh----hceeeccccchhhccccccccceeehhhcc---cCCceEEEEEcCC---C---CEEEecCCcccEEEEECc
Confidence            86    454444455544311010111233444443   3467888888752   3   45554 789999999985

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.87  E-value=7.1e-22  Score=205.50  Aligned_cols=266  Identities=17%  Similarity=0.277  Sum_probs=187.7

Q ss_pred             EEEeeeCCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          258 SLTLGALDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       258 ~LavG~~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      +..+-|.|. .+|+   +++|.||...+-.     ....+.||+   |..      +...=+.++|+++++|      .|
T Consensus       200 VYClQYDD~-kiVSGlrDnTikiWD~n~~~-----c~~~L~GHt---GSV------LCLqyd~rviisGSSD------sT  258 (499)
T KOG0281|consen  200 VYCLQYDDE-KIVSGLRDNTIKIWDKNSLE-----CLKILTGHT---GSV------LCLQYDERVIVSGSSD------ST  258 (499)
T ss_pred             eEEEEecch-hhhcccccCceEEeccccHH-----HHHhhhcCC---CcE------EeeeccceEEEecCCC------ce
Confidence            455555444 3444   4788888754432     112356662   322      2223345588888886      69


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEecccCCCCcccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVKGDSPVLHW  412 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~gh~s~V~~~  412 (634)
                      |++||++||+++.++-+|...| +.+ .|+.          .+++|+|.|.+|.+||+.....  +...|.||...|   
T Consensus       259 vrvWDv~tge~l~tlihHceaV-Lhl-rf~n----------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV---  323 (499)
T KOG0281|consen  259 VRVWDVNTGEPLNTLIHHCEAV-LHL-RFSN----------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV---  323 (499)
T ss_pred             EEEEeccCCchhhHHhhhccee-EEE-EEeC----------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe---
Confidence            9999999999999999999987 343 7774          5999999999999999986532  223455665543   


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                                  ..|-|+. .+|+++|.|.|||+|+..++. ...+|.||.-.|-++-  ..|+.++| |.|+||||||+
T Consensus       324 ------------NvVdfd~-kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  324 ------------NVVDFDD-KYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             ------------eeecccc-ceEEEecCCceEEEEecccee-eehhhhcccccceehh--ccCeEEEecCCCceEEEEec
Confidence                        3334433 399999999999999999984 8899999998887654  57999999 99999999998


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhc
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKN  570 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~  570 (634)
                      .    -|+|+..++||..-.    |+                   -+|+        ++.||+ +-|+.|.||||...++
T Consensus       388 ~----~G~cLRvLeGHEeLv----Rc-------------------iRFd--------~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  388 E----CGACLRVLEGHEELV----RC-------------------IRFD--------NKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             c----ccHHHHHHhchHHhh----hh-------------------eeec--------CceeeeccccceEEEEecccccC
Confidence            6    699999999997411    11                   2454        257777 5699999999987665


Q ss_pred             ccccccccccCCcceeeEEEeccCCCeeeeccccCcc-ccCCCCCCCEEE
Q 047036          571 SAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF-AVTDSPEAPLVV  619 (634)
Q Consensus       571 ~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f-~~~~~~~~~iiv  619 (634)
                      -...      ...-|. -.++.+.+.|.-.+|  |.| ..+++-+..|+|
T Consensus       433 pra~------~~~~Cl-~~lv~hsgRVFrLQF--D~fqIvsssHddtILi  473 (499)
T KOG0281|consen  433 PRAP------ASTLCL-RTLVEHSGRVFRLQF--DEFQIISSSHDDTILI  473 (499)
T ss_pred             Cccc------ccchHH-HhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence            3211      222344 257788889998887  446 445555556655

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.87  E-value=3.6e-21  Score=200.91  Aligned_cols=203  Identities=14%  Similarity=0.238  Sum_probs=162.7

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      +.+|+. +.+.|.+.|   .+|++|....+.|     .+.+.||. ...|+++++.+..|        ++++.|      
T Consensus       154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----kltltGhi~~vr~vavS~rHpYl--------Fs~ged------  214 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----KLTLTGHIETVRGVAVSKRHPYL--------FSAGED------  214 (460)
T ss_pred             EEEEeeCCCceeEEecCCCceeEEEEcccCeE-----EEeecchhheeeeeeecccCceE--------EEecCC------
Confidence            777777 778888876   4888888777542     34566773 34899999888654        455554      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|+.||+++.|+||.+-||-.+|  ..+++.|.        -..|++|+.|.++|+||+|++.. |..|.||..+|.  
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V--~~L~lhPT--------ldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~--  281 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGV--YCLDLHPT--------LDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVA--  281 (460)
T ss_pred             CeeEEEechhhhhHHHhcccccee--EEEecccc--------ceeEEecCCcceEEEeeecccce-EEEecCCCCcce--
Confidence            799999999999999999999998  35699997        57999999999999999999765 688988887652  


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                                  +.+|..-+++|++||.|++|||||+..++ ...+|..|.-.|.+++..|.-...||++-..|+-|++-
T Consensus       282 ------------~V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p  348 (460)
T KOG0285|consen  282 ------------SVMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLP  348 (460)
T ss_pred             ------------eEEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCccceeccCC
Confidence                        22333457899999999999999998875 55678889999999999999988888777789999974


Q ss_pred             cccCCCCeeeeecCCCC
Q 047036          493 FSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh~~  509 (634)
                          .|..++-+.||.+
T Consensus       349 ----~g~f~~nlsgh~~  361 (460)
T KOG0285|consen  349 ----EGEFLQNLSGHNA  361 (460)
T ss_pred             ----ccchhhccccccc
Confidence                6776666666654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=6.2e-20  Score=204.82  Aligned_cols=198  Identities=16%  Similarity=0.264  Sum_probs=153.5

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      ...|.+++|+++|++++.|      +.|++||..+|-|+.+|.-|+.+|  +.++|+..        ++.++|.|-||||
T Consensus       353 i~~l~YSpDgq~iaTG~eD------gKVKvWn~~SgfC~vTFteHts~V--t~v~f~~~--------g~~llssSLDGtV  416 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAED------GKVKVWNTQSGFCFVTFTEHTSGV--TAVQFTAR--------GNVLLSSSLDGTV  416 (893)
T ss_pred             eeeEEECCCCcEEEeccCC------CcEEEEeccCceEEEEeccCCCce--EEEEEEec--------CCEEEEeecCCeE
Confidence            4456666777888888876      799999999999999999999997  57799987        6899999999999


Q ss_pred             EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeE-EEEECCC-cEEEEeccccccccccccCCCCC
Q 047036          388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI-VVGSLDG-KIRLYSKTSMRQAKTAFPGLGSP  465 (634)
Q Consensus       388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I-ASGS~DG-tIRLWD~~t~r~akt~L~GH~d~  465 (634)
                      |.||+.-.++ .+++..   |           ...+|+|+|..|.|-| ..|+.|. .|.+|++++++ .+-.|.||.+|
T Consensus       417 RAwDlkRYrN-fRTft~---P-----------~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgP  480 (893)
T KOG0291|consen  417 RAWDLKRYRN-FRTFTS---P-----------EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGP  480 (893)
T ss_pred             Eeeeecccce-eeeecC---C-----------CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCc
Confidence            9999975544 355531   1           3457999999999954 4556554 79999999995 88999999999


Q ss_pred             eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036          466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE  544 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~  544 (634)
                      |.+|+|+|+|..|+| |-|+|||+||+.-  ..|+ .-+              |++.- +    .-.+.|.|+       
T Consensus       481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~--s~~~-vEt--------------l~i~s-d----vl~vsfrPd-------  531 (893)
T KOG0291|consen  481 VSGLSFSPDGSLLASGSWDKTVRIWDIFS--SSGT-VET--------------LEIRS-D----VLAVSFRPD-------  531 (893)
T ss_pred             ceeeEEccccCeEEeccccceEEEEEeec--cCce-eee--------------Eeecc-c----eeEEEEcCC-------
Confidence            999999999999999 9999999999752  1111 111              11110 1    124778877       


Q ss_pred             CCCCceEEEEEcCCeEEEEeChhhh
Q 047036          545 NGKQERHLVATVGKFSVIWDFQQVK  569 (634)
Q Consensus       545 ~g~~E~~IvtStg~~viiWdl~~v~  569 (634)
                       |  ++..|++-++-|.+||.+.-.
T Consensus       532 -G--~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  532 -G--KELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             -C--CeEEEEEecceEEEEEhhhce
Confidence             4  457777789999999987443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3e-19  Score=184.28  Aligned_cols=279  Identities=18%  Similarity=0.253  Sum_probs=184.5

Q ss_pred             CCcEEEeee-CCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ++...++.| .++.+++.   ++.+++|.... |.+.+    .+.      .+.+-++.+.. ....+.++.++..    
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~----ti~------skkyG~~~~~F-th~~~~~i~sStk----   77 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVK----TIN------SKKYGVDLACF-THHSNTVIHSSTK----   77 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCC-Cceee----Eee------cccccccEEEE-ecCCceEEEccCC----
Confidence            456888999 77877775   35888888544 42222    121      11122222222 2233334444442    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +|.+||+.++.+.|.||.|.||++.|+  .++.+|-        ++.++|||.|++||+||+|..+|.. .+.       
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~--sL~~sP~--------~d~FlS~S~D~tvrLWDlR~~~cqg-~l~-------  139 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVN--SLSVSPK--------DDTFLSSSLDKTVRLWDLRVKKCQG-LLN-------  139 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEE--EEEecCC--------CCeEEecccCCeEEeeEecCCCCce-EEe-------
Confidence            347999999999999999999999874  4588886        6899999999999999999877632 111       


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-ccccccc---CCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFP---GLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~---GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                              ...  -.++|+.|.| .+|+|..-+.|+|||++... -..+++.   +-...++.|.|||||++||- |..+
T Consensus       140 --------~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s  209 (311)
T KOG1446|consen  140 --------LSG--RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS  209 (311)
T ss_pred             --------cCC--CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence                    011  1356899999 57888877799999987641 1223332   34567899999999999987 8889


Q ss_pred             cEEEEEcccccCCCCeeeeecCCCCCC-CCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEE
Q 047036          485 YLILICTLFSDKDGKTKTGFSGRMGNK-IPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVI  562 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh~~~~-~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vii  562 (634)
                      .+.|.|+-    +|..+.+|.++.... .|                ....|+|+        +   +.|.+ +.|+.|.+
T Consensus       210 ~~~~lDAf----~G~~~~tfs~~~~~~~~~----------------~~a~ftPd--------s---~Fvl~gs~dg~i~v  258 (311)
T KOG1446|consen  210 FIYLLDAF----DGTVKSTFSGYPNAGNLP----------------LSATFTPD--------S---KFVLSGSDDGTIHV  258 (311)
T ss_pred             cEEEEEcc----CCcEeeeEeeccCCCCcc----------------eeEEECCC--------C---cEEEEecCCCcEEE
Confidence            99999985    788899999887532 11                12455555        3   45555 66799999


Q ss_pred             EeChhhhcccccccccccCCcceeeEEEec-cCCCeeeeccccCccccCCCCCCCEEEEcCCce
Q 047036          563 WDFQQVKNSAHECYRNQQGLKSCYCYKIVL-KDESIVESRFMHDKFAVTDSPEAPLVVATPMKV  625 (634)
Q Consensus       563 Wdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~-~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v  625 (634)
                      |+++   .|.+.             -+... ....+..++| .+.|.+=.+.+..|+.=+|+..
T Consensus       259 w~~~---tg~~v-------------~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~  305 (311)
T KOG1446|consen  259 WNLE---TGKKV-------------AVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDED  305 (311)
T ss_pred             EEcC---CCcEe-------------eEecCCCCCCcccccc-CCceeeeeecCceEEEEecccc
Confidence            9996   33322             12222 3445555567 6666322222358888888754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.86  E-value=6.2e-21  Score=199.20  Aligned_cols=178  Identities=16%  Similarity=0.215  Sum_probs=144.1

Q ss_pred             CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      |++++++.|...        .+.+++.|      +||++||++||++.-++.||-..|+  -++||+-        ..++
T Consensus       153 WVr~vavdP~n~--------wf~tgs~D------rtikIwDlatg~LkltltGhi~~vr--~vavS~r--------HpYl  208 (460)
T KOG0285|consen  153 WVRSVAVDPGNE--------WFATGSAD------RTIKIWDLATGQLKLTLTGHIETVR--GVAVSKR--------HPYL  208 (460)
T ss_pred             eEEEEeeCCCce--------eEEecCCC------ceeEEEEcccCeEEEeecchhheee--eeeeccc--------CceE
Confidence            446777777653        34455554      7999999999999999999999875  4588875        5799


Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                      |+++.|+.|+.||+... ++|+.+.||.+.|               .|++..|.- .|++||.|.+||+||+++ |....
T Consensus       209 Fs~gedk~VKCwDLe~n-kvIR~YhGHlS~V---------------~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~  271 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEYN-KVIRHYHGHLSGV---------------YCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVH  271 (460)
T ss_pred             EEecCCCeeEEEechhh-hhHHHhcccccee---------------EEEeccccceeEEecCCcceEEEeeecc-cceEE
Confidence            99999999999999874 5667777777654               688888765 899999999999999988 45778


Q ss_pred             cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCc
Q 047036          458 AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDS  525 (634)
Q Consensus       458 ~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~  525 (634)
                      .|.||..+|.+|-+.|-.-.|++ |+|++|||||++    .|+...+++.|-    ..-|.|.|.|...
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~----agkt~~tlt~hk----ksvral~lhP~e~  332 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR----AGKTMITLTHHK----KSVRALCLHPKEN  332 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeec----cCceeEeeeccc----ceeeEEecCCchh
Confidence            99999999999999975555666 999999999987    688888888775    3457888877653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.86  E-value=4.6e-21  Score=205.83  Aligned_cols=247  Identities=17%  Similarity=0.280  Sum_probs=180.7

Q ss_pred             CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc
Q 047036          273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE  352 (634)
Q Consensus       273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH  352 (634)
                      -+|.||....++    ....+|.+|.       .|.+.+.+++++..+|+++.|      ++|++||+|||+++..|.  
T Consensus       237 ~~vklW~vy~~~----~~lrtf~gH~-------k~Vrd~~~s~~g~~fLS~sfD------~~lKlwDtETG~~~~~f~--  297 (503)
T KOG0282|consen  237 GLVKLWNVYDDR----RCLRTFKGHR-------KPVRDASFNNCGTSFLSASFD------RFLKLWDTETGQVLSRFH--  297 (503)
T ss_pred             ceEEEEEEecCc----ceehhhhcch-------hhhhhhhccccCCeeeeeecc------eeeeeeccccceEEEEEe--
Confidence            366667664443    1233455652       355555666777888899887      799999999999999875  


Q ss_pred             CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC
Q 047036          353 KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD  432 (634)
Q Consensus       353 ~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d  432 (634)
                      .+.|. .++.|.|+.       .+.+++|+.|+.|+.||+|++. +||.+..|.++|               ..+.|-++
T Consensus       298 ~~~~~-~cvkf~pd~-------~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i---------------~~i~F~~~  353 (503)
T KOG0282|consen  298 LDKVP-TCVKFHPDN-------QNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAI---------------LDITFVDE  353 (503)
T ss_pred             cCCCc-eeeecCCCC-------CcEEEEecCCCcEEEEeccchH-HHHHHHhhhhhe---------------eeeEEccC
Confidence            44453 778999993       2789999999999999999864 678877665543               45677788


Q ss_pred             C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCC
Q 047036          433 G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGN  510 (634)
Q Consensus       433 G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~  510 (634)
                      | ++++.|.|+++|+|+....--.+..+.-+.....+|..+|+|.|+++ |+|++|.|+.+..... -.....|+||...
T Consensus       354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~va  432 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSVA  432 (503)
T ss_pred             CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc-cCHhhhhcceecc
Confidence            8 89999999999999976532233334445566789999999999999 9999999999765432 2334568888741


Q ss_pred             CCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEE
Q 047036          511 KIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK  589 (634)
Q Consensus       511 ~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~  589 (634)
                                      .+...+.|+|+        |   .+|++ .+++.|.+||.+..+.-.                +
T Consensus       433 ----------------Gys~~v~fSpD--------G---~~l~SGdsdG~v~~wdwkt~kl~~----------------~  469 (503)
T KOG0282|consen  433 ----------------GYSCQVDFSPD--------G---RTLCSGDSDGKVNFWDWKTTKLVS----------------K  469 (503)
T ss_pred             ----------------CceeeEEEcCC--------C---CeEEeecCCccEEEeechhhhhhh----------------c
Confidence                            11234666666        4   46666 678999999999766421                5


Q ss_pred             EeccCCCeeeeccccCcc
Q 047036          590 IVLKDESIVESRFMHDKF  607 (634)
Q Consensus       590 i~~~~~~i~~~~f~~d~f  607 (634)
                      ++.|++.++.+.+ ||--
T Consensus       470 lkah~~~ci~v~w-HP~e  486 (503)
T KOG0282|consen  470 LKAHDQPCIGVDW-HPVE  486 (503)
T ss_pred             cccCCcceEEEEe-cCCC
Confidence            7888899998888 6654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.86  E-value=5e-20  Score=188.63  Aligned_cols=192  Identities=14%  Similarity=0.188  Sum_probs=161.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      |-+..|++.|++++-|      +.+-+||.-|...++-+.-...+| +++ +|+|.        |+.+|+|+-||..-++
T Consensus        61 ~~ws~Dsr~ivSaSqD------GklIvWDs~TtnK~haipl~s~WV-MtC-A~sPS--------g~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   61 MDWSTDSRRIVSASQD------GKLIVWDSFTTNKVHAIPLPSSWV-MTC-AYSPS--------GNFVACGGLDNKCSIY  124 (343)
T ss_pred             eEecCCcCeEEeeccC------CeEEEEEcccccceeEEecCceeE-EEE-EECCC--------CCeEEecCcCceeEEE
Confidence            4445677788888876      689999999999999999999988 454 99998        7899999999999999


Q ss_pred             EcCCC--C---ceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036          391 DMRDR--S---GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP  465 (634)
Q Consensus       391 D~R~~--~---~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~  465 (634)
                      ++.++  .   .+.+.|.+|..          |     ++|+-|.+|++|++||.|.++-|||+.+++ ..+.|.||..-
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtg----------y-----lScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD  188 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTG----------Y-----LSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD  188 (343)
T ss_pred             ecccccccccceeeeeecCccc----------e-----eEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCccc
Confidence            99865  2   23345666643          2     578888999999999999999999999984 78899999999


Q ss_pred             eEEEEECC-CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          466 ITHVDVTY-DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       466 ItsVdfSp-DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      |.+|+++| ++++.+| +||++.+|||++    .|.+++.|.||..+.                  +.+.|.|.      
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDI------------------Nsv~ffP~------  240 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDI------------------NSVRFFPS------  240 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeecc----CcceeEeeccccccc------------------ceEEEccC------
Confidence            99999999 9999999 999999999997    789999999998643                  45788887      


Q ss_pred             cCCCCceEEEE-EcCCeEEEEeChh
Q 047036          544 ENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       544 ~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                        |   ..++| |.|.....+|+..
T Consensus       241 --G---~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  241 --G---DAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             --C---CeeeecCCCceeEEEeecC
Confidence              3   34555 6688888999973

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=8.4e-21  Score=198.52  Aligned_cols=203  Identities=15%  Similarity=0.232  Sum_probs=150.0

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      .++.|-|.+        +.|++++.|      +||+.|++.||-++.+|.+|...|.  +++++.|        |.++|+
T Consensus       197 S~V~f~P~g--------d~ilS~srD------~tik~We~~tg~cv~t~~~h~ewvr--~v~v~~D--------Gti~As  252 (406)
T KOG0295|consen  197 SSVFFLPLG--------DHILSCSRD------NTIKAWECDTGYCVKTFPGHSEWVR--MVRVNQD--------GTIIAS  252 (406)
T ss_pred             eeEEEEecC--------Ceeeecccc------cceeEEecccceeEEeccCchHhEE--EEEecCC--------eeEEEe
Confidence            455566654        678888876      6999999999999999999999874  7788888        789999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCc--cccccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEecccccccc
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPV--LHWTQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAK  456 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V--~~~~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~ak  456 (634)
                      |+.|++|++|=+.++.|. +.+.+|..+|  ..|.-...|.   .++-...+.+ | ++++||.|++||+||+.+++ +.
T Consensus       253 ~s~dqtl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~---~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL  327 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCK-AELREHEHPVECIAWAPESSYP---SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CL  327 (406)
T ss_pred             cCCCceEEEEEeccchhh-hhhhccccceEEEEecccccCc---chhhccCCCCCccEEEeecccceEEEEeccCCe-EE
Confidence            999999999999987653 5666666543  1122111111   1111111222 3 79999999999999999985 88


Q ss_pred             ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036          457 TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH  535 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft  535 (634)
                      .+|.||..+|.+|+|+|-|+||+| ..|++|++||++    .++|+..+..|.                 |. ...+-|.
T Consensus       328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~----~~~cmk~~~ah~-----------------hf-vt~lDfh  385 (406)
T KOG0295|consen  328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK----NLQCMKTLEAHE-----------------HF-VTSLDFH  385 (406)
T ss_pred             EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec----cceeeeccCCCc-----------------ce-eEEEecC
Confidence            999999999999999999999999 889999999986    566665554332                 22 1235555


Q ss_pred             cccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          536 GGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       536 ~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      ...          ...+.+|.+..+.+|-
T Consensus       386 ~~~----------p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  386 KTA----------PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCC----------ceEEeccccceeeeee
Confidence            441          1344447899999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.85  E-value=3.2e-19  Score=179.70  Aligned_cols=212  Identities=15%  Similarity=0.205  Sum_probs=152.8

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM  392 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~  392 (634)
                      .|+++|.+++.       ..||++|+.+++  .+.+|.+|++.|  .+|.|..+        |+..+|||.|+++|+||+
T Consensus        50 pdk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~h~kNV--taVgF~~d--------grWMyTgseDgt~kIWdl  112 (311)
T KOG0315|consen   50 PDKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEGHTKNV--TAVGFQCD--------GRWMYTGSEDGTVKIWDL  112 (311)
T ss_pred             CCcchhhhccC-------CeeEEEEccCCCCCceeEEeccCCce--EEEEEeec--------CeEEEecCCCceEEEEec
Confidence            33445556655       369999999986  599999998865  67899988        689999999999999999


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                      |...+  +.+               |....++.+++..|+. .|++|..+|-||+||+.........+|.-.-+|.++.+
T Consensus       113 R~~~~--qR~---------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen  113 RSLSC--QRN---------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV  175 (311)
T ss_pred             cCccc--chh---------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence            98543  333               3344566888888875 89999999999999987632223456777789999999


Q ss_pred             CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036          472 TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER  550 (634)
Q Consensus       472 SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~  550 (634)
                      -|||++|++ ...+...+|++..    +.    +..+            |.|.+...+ .+---+++.||+.   +   +
T Consensus       176 ~~dgsml~a~nnkG~cyvW~l~~----~~----~~s~------------l~P~~k~~a-h~~~il~C~lSPd---~---k  228 (311)
T KOG0315|consen  176 MPDGSMLAAANNKGNCYVWRLLN----HQ----TASE------------LEPVHKFQA-HNGHILRCLLSPD---V---K  228 (311)
T ss_pred             cCCCcEEEEecCCccEEEEEccC----CC----cccc------------ceEhhheec-ccceEEEEEECCC---C---c
Confidence            999999999 8899999999752    11    1111            112221111 1112246777752   3   6


Q ss_pred             EEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          551 HLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       551 ~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      +|+| |+|..|+||+.+..+.+.+               +|..+..=|=|..|
T Consensus       229 ~lat~ssdktv~iwn~~~~~kle~---------------~l~gh~rWvWdc~F  266 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNTDDFFKLEL---------------VLTGHQRWVWDCAF  266 (311)
T ss_pred             EEEeecCCceEEEEecCCceeeEE---------------EeecCCceEEeeee
Confidence            8877 7899999999987755443               46666655666665

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.84  E-value=2.2e-19  Score=201.58  Aligned_cols=185  Identities=16%  Similarity=0.195  Sum_probs=143.1

Q ss_pred             CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc
Q 047036          273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE  352 (634)
Q Consensus       273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH  352 (634)
                      .+|.+|.....-    .....+.||.       ..+..+.+...+..|++++.|      +|+|+||..+|+|+..+.||
T Consensus       228 ~tl~~~~~~~~~----~i~~~l~GH~-------g~V~~l~~~~~~~~lvsgS~D------~t~rvWd~~sg~C~~~l~gh  290 (537)
T KOG0274|consen  228 STLHLWDLNNGY----LILTRLVGHF-------GGVWGLAFPSGGDKLVSGSTD------KTERVWDCSTGECTHSLQGH  290 (537)
T ss_pred             ceeEEeecccce----EEEeeccCCC-------CCceeEEEecCCCEEEEEecC------CcEEeEecCCCcEEEEecCC
Confidence            577777754432    1222366762       233344444456678888876      69999999999999999999


Q ss_pred             CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC
Q 047036          353 KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD  432 (634)
Q Consensus       353 ~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d  432 (634)
                      .+.|  .++.+.+          -.+++||.|++|++|++..+.+ ++++.+|..+|               .|+... .
T Consensus       291 ~stv--~~~~~~~----------~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V---------------~~v~~~-~  341 (537)
T KOG0274|consen  291 TSSV--RCLTIDP----------FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPV---------------NCVQLD-E  341 (537)
T ss_pred             CceE--EEEEccC----------ceEeeccCCceEEEEeccCcce-EEEeccccccE---------------EEEEec-C
Confidence            9865  3334443          4789999999999999998654 67787676654               566655 5


Q ss_pred             CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC-CeeeeecCCCC
Q 047036          433 GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG-KTKTGFSGRMG  509 (634)
Q Consensus       433 G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G-~~~~gF~gh~~  509 (634)
                      +.|++||.||+|++||+.+++ +++.|.||...|++|.|.+. ..+++ ++|++|++||+.    ++ +|+.+|.+|..
T Consensus       342 ~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~  414 (537)
T KOG0274|consen  342 PLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTS  414 (537)
T ss_pred             CEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCC----chhhhhhhhcCCcc
Confidence            599999999999999999884 89999999999999988776 78888 999999999986    45 78888988874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.83  E-value=6.8e-19  Score=190.34  Aligned_cols=267  Identities=19%  Similarity=0.183  Sum_probs=171.2

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccC--Cc-eecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYN--RG-IHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~--~g-l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ++|++. +.++.++.|   ..|..|....  -. -.|+ .+....+| .+++.+|+|.+        .|||.-+..    
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h-~i~sl~ys~Tg--------~~iLvvsg~----  235 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETH-QINSLQYSVTG--------DQILVVSGS----  235 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhh-ccCccccc-ccceeeecCCC--------CeEEEEecC----
Confidence            788888 778777777   4788776311  00 1111 01111122 23566677654        344433221    


Q ss_pred             CCCcEEEEeCCCCcEEEEE-------------eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEW-------------KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~l-------------kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                        -.++|.|-. |..+-++             +||...+  +..+|.|+.|       +.++|++.|+|+|+||+.....
T Consensus       236 --aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~l--t~g~whP~~k-------~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  236 --AQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAEL--TCGCWHPDNK-------EEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             --cceeEEccC-CceeeeeeccchhhhhhhccCCceeee--eccccccCcc-------cceEEecCCCcEEEEecCCchh
Confidence              368899854 6555443             6888765  5669999965       6899999999999999875432


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccc-cCCCC--CeEEEEEC
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAF-PGLGS--PITHVDVT  472 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L-~GH~d--~ItsVdfS  472 (634)
                      -.+.+. |..     .++    ..+++++++++++| .||.|+.||.|.+||..+.. +..... .+|..  .|+||.||
T Consensus       304 q~qVik-~k~-----~~g----~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  304 QLQVIK-TKP-----AGG----KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             heeEEe-ecc-----CCC----cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence            223332 000     011    34567888999999 79999999999999964321 111222 36776  89999999


Q ss_pred             CCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE
Q 047036          473 YDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH  551 (634)
Q Consensus       473 pDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~  551 (634)
                      +||++||| +.|.+|+|||++   +-.+++..++|-..                     ...=+-|+||+.      ++.
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLr---q~kkpL~~~tgL~t---------------------~~~~tdc~FSPd------~kl  423 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLR---QFKKPLNVRTGLPT---------------------PFPGTDCCFSPD------DKL  423 (641)
T ss_pred             cccchhhhccCCCceeeeecc---ccccchhhhcCCCc---------------------cCCCCccccCCC------ceE
Confidence            99999999 999999999987   34555555544331                     112234566651      467


Q ss_pred             EEEEc-------CCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          552 LVATV-------GKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       552 IvtSt-------g~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                      |+|++       -+.++.+|-.+     ++           .-|+|..-..+|+.+.. |++-
T Consensus       424 i~TGtS~~~~~~~g~L~f~d~~t-----~d-----------~v~ki~i~~aSvv~~~W-hpkL  469 (641)
T KOG0772|consen  424 ILTGTSAPNGMTAGTLFFFDRMT-----LD-----------TVYKIDISTASVVRCLW-HPKL  469 (641)
T ss_pred             EEecccccCCCCCceEEEEeccc-----ee-----------eEEEecCCCceEEEEee-cchh
Confidence            77732       34577777442     11           23788888888998888 8876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=3e-18  Score=163.89  Aligned_cols=195  Identities=17%  Similarity=0.265  Sum_probs=143.4

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      ...+.+++++++|++++.+      +.|++||+.+++.+..+.+|...+  ..+.|+|+        ++.+++|+.|+.|
T Consensus        12 i~~~~~~~~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~~--------~~~l~~~~~~~~i   75 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGD------GTIKVWDLETGELLRTLKGHTGPV--RDVAASAD--------GTYLASGSSDKTI   75 (289)
T ss_pred             EEEEEEcCCCCEEEEeecC------cEEEEEEeeCCCcEEEEecCCcce--eEEEECCC--------CCEEEEEcCCCeE
Confidence            3344444555667776654      689999999999999999998865  34589987        5689999999999


Q ss_pred             EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      ++||++.+.. +..+..|.               ..+.++++++++ .|++++.||.|++||+.+.+ ....+.+|..+|
T Consensus        76 ~i~~~~~~~~-~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i  138 (289)
T cd00200          76 RLWDLETGEC-VRTLTGHT---------------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWV  138 (289)
T ss_pred             EEEEcCcccc-eEEEeccC---------------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcE
Confidence            9999987543 34454332               246788898887 56777779999999998653 667788999999


Q ss_pred             EEEEECCCCCEEEEEc-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccC
Q 047036          467 THVDVTYDGKWILGTT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTEN  545 (634)
Q Consensus       467 tsVdfSpDGk~LlSS~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~  545 (634)
                      ++++|+|++++|+++. |+.|++||+.    .++.+..|..|...                  ...+.|.|.        
T Consensus       139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~------------------i~~~~~~~~--------  188 (289)
T cd00200         139 NSVAFSPDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGE------------------VNSVAFSPD--------  188 (289)
T ss_pred             EEEEEcCcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccc------------------cceEEECCC--------
Confidence            9999999999999955 9999999975    35544444433210                  012333333        


Q ss_pred             CCCceEEEEEcCCeEEEEeChh
Q 047036          546 GKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       546 g~~E~~IvtStg~~viiWdl~~  567 (634)
                      +  ...++++.++.+.+||+..
T Consensus       189 ~--~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         189 G--EKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             c--CEEEEecCCCcEEEEECCC
Confidence            2  3456667799999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.6e-19  Score=195.60  Aligned_cols=255  Identities=16%  Similarity=0.205  Sum_probs=188.9

Q ss_pred             CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      |++++.|-+.+        +-|+++++|      ..||+++..|++.|.+|..|.+.++  .++++|.        ...+
T Consensus        57 PvRa~kfiaRk--------nWiv~GsDD------~~IrVfnynt~ekV~~FeAH~DyIR--~iavHPt--------~P~v  112 (794)
T KOG0276|consen   57 PVRAAKFIARK--------NWIVTGSDD------MQIRVFNYNTGEKVKTFEAHSDYIR--SIAVHPT--------LPYV  112 (794)
T ss_pred             chhhheeeecc--------ceEEEecCC------ceEEEEecccceeeEEeecccccee--eeeecCC--------CCeE
Confidence            44555555443        567888775      7899999999999999999999864  5699997        4689


Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccc
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAK  456 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~ak  456 (634)
                      +|+|+|-+||+||-...-.+.|++.||..-               +-++||.|..  .+||||.|+|||+|.+-+. -+.
T Consensus       113 LtsSDDm~iKlW~we~~wa~~qtfeGH~Hy---------------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n  176 (794)
T KOG0276|consen  113 LTSSDDMTIKLWDWENEWACEQTFEGHEHY---------------VMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN  176 (794)
T ss_pred             EecCCccEEEEeeccCceeeeeEEcCcceE---------------EEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence            999999999999998765567899887643               3578898864  7999999999999998765 377


Q ss_pred             ccccCCCCCeEEEEECCCC--CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036          457 TAFPGLGSPITHVDVTYDG--KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK  533 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDG--k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~  533 (634)
                      .+|.||...|++|++=|-|  -||+| +.|.+|++||.+    +-.|+++++||..+.                  ..+.
T Consensus       177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~Nv------------------s~v~  234 (794)
T KOG0276|consen  177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTNNV------------------SFVF  234 (794)
T ss_pred             eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccccc------------------eEEE
Confidence            8899999999999998766  59999 889999999986    678999999998643                  1245


Q ss_pred             cccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEE--------EeccCCCeeeecccc
Q 047036          534 IHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK--------IVLKDESIVESRFMH  604 (634)
Q Consensus       534 Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~--------i~~~~~~i~~~~f~~  604 (634)
                      |+|. |          -.|++ |.|++|.||+-..-+.-+.-.|    ||-...|-.        ..++++-++-+..-.
T Consensus       235 fhp~-l----------piiisgsEDGTvriWhs~Ty~lE~tLn~----gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgr  299 (794)
T KOG0276|consen  235 FHPE-L----------PIIISGSEDGTVRIWNSKTYKLEKTLNY----GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGR  299 (794)
T ss_pred             ecCC-C----------cEEEEecCCccEEEecCcceehhhhhhc----CCceEEEEeecCCCCeEEEeccCCcEEEEccC
Confidence            5554 1          24555 7899999999776555444333    344444444        344555544333322


Q ss_pred             CccccCCCCCCCEEEEcCCceeeeec
Q 047036          605 DKFAVTDSPEAPLVVATPMKVSSISL  630 (634)
Q Consensus       605 d~f~~~~~~~~~iivA~~~~v~~~~~  630 (634)
                      +.=.++-++..+||=|-.+++-.+++
T Consensus       300 eeP~vsMd~~gKIiwa~~~ei~~~~~  325 (794)
T KOG0276|consen  300 EEPAVSMDSNGKIIWAVHSEIQAVNL  325 (794)
T ss_pred             CCCceeecCCccEEEEcCceeeeeec
Confidence            22233433446788888777777766

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=5.1e-19  Score=199.63  Aligned_cols=147  Identities=9%  Similarity=0.076  Sum_probs=119.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-------EEecccC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-------VQNMVKG  405 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-------Vq~l~gh  405 (634)
                      +.|++|++.+...+..+.+|...|  ..++|+|+.       +.+||||+.|++|++||++.+...       +..+.+|
T Consensus        54 gvI~L~~~~r~~~v~~L~gH~~~V--~~lafsP~~-------~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         54 GAIRLENQMRKPPVIKLKGHTSSI--LDLQFNPCF-------SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             eEEEeeecCCCceEEEEcCCCCCE--EEEEEcCCC-------CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            689999998888999999999986  456999962       469999999999999999864321       2233333


Q ss_pred             CCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                      .               ..+.+++++|++ . ||+||.||+|||||+.+++ ....+. |...|.+|+|+|||++|++ +.
T Consensus       125 ~---------------~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~  187 (568)
T PTZ00420        125 K---------------KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCV  187 (568)
T ss_pred             C---------------CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEec
Confidence            2               346899999987 4 6899999999999998764 445565 6788999999999999998 67


Q ss_pred             CCcEEEEEcccccCCCCeeeeecCCCC
Q 047036          483 DTYLILICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       483 D~tIrLWD~~~~~~~G~~~~gF~gh~~  509 (634)
                      |++|+|||++    +|+.+..|.+|.+
T Consensus       188 D~~IrIwD~R----sg~~i~tl~gH~g  210 (568)
T PTZ00420        188 GKHMHIIDPR----KQEIASSFHIHDG  210 (568)
T ss_pred             CCEEEEEECC----CCcEEEEEecccC
Confidence            9999999987    6788888888875

>PTZ00421 coronin; Provisional

Probab=99.82  E-value=9.6e-19  Score=194.97  Aligned_cols=146  Identities=12%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             cEEEEeCCCCcEEE---EEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC------ceEEecc
Q 047036          334 GVQQLDIETGKIVT---EWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRS------GIVQNMV  403 (634)
Q Consensus       334 TIrlWDleTGK~V~---~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~------~~Vq~l~  403 (634)
                      .+.+|..++|+...   .+.||.+.|  ..++|+| +        +++|++|+.|++|++||+...+      .++..+.
T Consensus        53 ~~v~~~~~~G~~~~~~~~l~GH~~~V--~~v~fsP~d--------~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~  122 (493)
T PTZ00421         53 TAVLKHTDYGKLASNPPILLGQEGPI--IDVAFNPFD--------PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ  122 (493)
T ss_pred             eEEeeccccccCCCCCceEeCCCCCE--EEEEEcCCC--------CCEEEEEeCCCEEEEEecCCCccccccCcceEEec
Confidence            45555556666443   588999986  4569999 5        5799999999999999997642      1344555


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-  480 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-  480 (634)
                      +|..               .+.+++|+|++  .||+||.|++|||||+.+++ ....+.+|.++|++|+|+|||++|++ 
T Consensus       123 gH~~---------------~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~lLatg  186 (493)
T PTZ00421        123 GHTK---------------KVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLCTT  186 (493)
T ss_pred             CCCC---------------cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCEEEEe
Confidence            5543               35788999874  79999999999999998864 67789999999999999999999999 


Q ss_pred             EcCCcEEEEEcccccCCCCeeeeecCCCC
Q 047036          481 TTDTYLILICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       481 S~D~tIrLWD~~~~~~~G~~~~gF~gh~~  509 (634)
                      +.|++|+|||++    +|+.+..+.+|.+
T Consensus       187 s~Dg~IrIwD~r----sg~~v~tl~~H~~  211 (493)
T PTZ00421        187 SKDKKLNIIDPR----DGTIVSSVEAHAS  211 (493)
T ss_pred             cCCCEEEEEECC----CCcEEEEEecCCC
Confidence            889999999986    5777777777754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=4e-18  Score=199.10  Aligned_cols=146  Identities=13%  Similarity=0.209  Sum_probs=117.6

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      +.++|++++.|      ++|++||+.+|+++.++..|..   |..+.|++..       +..+++|+.|++|++||+|..
T Consensus       587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~~~~---v~~v~~~~~~-------g~~latgs~dg~I~iwD~~~~  650 (793)
T PLN00181        587 DPTLLASGSDD------GSVKLWSINQGVSIGTIKTKAN---ICCVQFPSES-------GRSLAFGSADHKVYYYDLRNP  650 (793)
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCcEEEEEecCCC---eEEEEEeCCC-------CCEEEEEeCCCeEEEEECCCC
Confidence            55677788775      7999999999999999987753   3556885531       679999999999999999976


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccc-----cccccccCCCCCeEEEE
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMR-----QAKTAFPGLGSPITHVD  470 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r-----~akt~L~GH~d~ItsVd  470 (634)
                      +..+..+.+|...               +++++|.++.+|++||.|++|||||+....     .....+.||...|+.++
T Consensus       651 ~~~~~~~~~h~~~---------------V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        651 KLPLCTMIGHSKT---------------VSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             CccceEecCCCCC---------------EEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            5444566555443               567788766699999999999999986320     24567889999999999


Q ss_pred             ECCCCCEEEE-EcCCcEEEEEcc
Q 047036          471 VTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       471 fSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |+|+|.+|++ +.|++|+||+..
T Consensus       716 ~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        716 LSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EcCCCCEEEEEeCCCEEEEEECC
Confidence            9999999999 899999999964

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.81  E-value=7.7e-18  Score=180.83  Aligned_cols=230  Identities=13%  Similarity=0.150  Sum_probs=177.2

Q ss_pred             EEEeee-CCCeEEEecCeeeEEEc-cCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          258 SLTLGA-LDNSFLVSDLGLQVYRN-YNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G~~igV~k~-~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      +-++.+ +|+++++.|+--|+.+. ..+|    ..+..|..|       --|.-.+=.+..++.||+++-|      +|+
T Consensus       238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~H-------kgPI~slKWnk~G~yilS~~vD------~tt  300 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQH-------KGPIFSLKWNKKGTYILSGGVD------GTT  300 (524)
T ss_pred             cceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhcc-------CCceEEEEEcCCCCEEEeccCC------ccE
Confidence            667777 78999998864444433 1222    122333333       2355566678889999999886      799


Q ss_pred             EEEeCCCCcEEEEEeccCCC-cceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          336 QQLDIETGKIVTEWKFEKDG-TDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       336 rlWDleTGK~V~~lkgH~~~-V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      -+||..+|.+.+.|..|... +  -| .+-.+         ..+++.+.|+.|++.-+-..+ ++.++.||..+      
T Consensus       301 ilwd~~~g~~~q~f~~~s~~~l--DV-dW~~~---------~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~------  361 (524)
T KOG0273|consen  301 ILWDAHTGTVKQQFEFHSAPAL--DV-DWQSN---------DEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGE------  361 (524)
T ss_pred             EEEeccCceEEEeeeeccCCcc--ce-EEecC---------ceEeecCCCceEEEEEecCCC-cceeeecccCc------
Confidence            99999999999999999875 2  23 44433         578999999999999886544 57788776544      


Q ss_pred             ccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC---------EEEE-EcC
Q 047036          415 GHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK---------WILG-TTD  483 (634)
Q Consensus       415 g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk---------~LlS-S~D  483 (634)
                               +.++-+.|.| .|||+|.|+|+|||..... .+...|.+|...|..+.+||+|.         .||+ +.|
T Consensus       362 ---------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d  431 (524)
T KOG0273|consen  362 ---------VNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD  431 (524)
T ss_pred             ---------eEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence                     5788999988 7999999999999997654 37788999999999999999883         5777 999


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEE
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVI  562 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vii  562 (634)
                      ++|++||+.    .|.++..|.+|..+.                  ..+.|+|.        |   +++++ +.|+-|.|
T Consensus       432 stV~lwdv~----~gv~i~~f~kH~~pV------------------ysvafS~~--------g---~ylAsGs~dg~V~i  478 (524)
T KOG0273|consen  432 STVKLWDVE----SGVPIHTLMKHQEPV------------------YSVAFSPN--------G---RYLASGSLDGCVHI  478 (524)
T ss_pred             CeEEEEEcc----CCceeEeeccCCCce------------------EEEEecCC--------C---cEEEecCCCCeeEe
Confidence            999999986    799999999997532                  35777776        4   56666 78999999


Q ss_pred             EeCh
Q 047036          563 WDFQ  566 (634)
Q Consensus       563 Wdl~  566 (634)
                      |+.+
T Consensus       479 ws~~  482 (524)
T KOG0273|consen  479 WSTK  482 (524)
T ss_pred             cccc
Confidence            9987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.3e-18  Score=187.37  Aligned_cols=215  Identities=18%  Similarity=0.233  Sum_probs=154.4

Q ss_pred             EEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      +.++.+ .|+..++-|+   .|.||...+..     ....+..|+       .|.+.+-+....+.++++++|+     +
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----iLR~~~ah~-------apv~~~~f~~~d~t~l~s~sDd-----~  133 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----ILRQLYAHQ-------APVHVTKFSPQDNTMLVSGSDD-----K  133 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHH-----HHHHHhhcc-------CceeEEEecccCCeEEEecCCC-----c
Confidence            666777 8999988886   55555532221     111233332       3444444444445555555554     8


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      .+++||+.++.++.++.||++.|+  +.+|+|..       +.+++|||.|++||+||+|+....+.+|.          
T Consensus       134 v~k~~d~s~a~v~~~l~~htDYVR--~g~~~~~~-------~hivvtGsYDg~vrl~DtR~~~~~v~eln----------  194 (487)
T KOG0310|consen  134 VVKYWDLSTAYVQAELSGHTDYVR--CGDISPAN-------DHIVVTGSYDGKVRLWDTRSLTSRVVELN----------  194 (487)
T ss_pred             eEEEEEcCCcEEEEEecCCcceeE--eeccccCC-------CeEEEecCCCceEEEEEeccCCceeEEec----------
Confidence            999999999988779999999986  45899862       46999999999999999998754455552          


Q ss_pred             cccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                            ++.++..+++-|.| .||+|+. +.||+||+.++++..+.+..|.-.||||++.-||+.|+| +-|+.++++|+
T Consensus       195 ------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  195 ------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             ------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence                  34566777887776 7888876 799999999766666666679999999999999999999 99999999996


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCce-eEeecCCCc
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPR-LLKLTPLDS  525 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr-~L~L~Pe~~  525 (634)
                      .    +-+.+.++.  +    |.|. -+.+.|++.
T Consensus       268 t----~~Kvv~s~~--~----~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  268 T----NYKVVHSWK--Y----PGPVLSIAVSPDDQ  292 (487)
T ss_pred             c----ceEEEEeee--c----ccceeeEEecCCCc
Confidence            4    445444443  2    4443 356666554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.80  E-value=1.9e-18  Score=185.36  Aligned_cols=182  Identities=13%  Similarity=0.163  Sum_probs=135.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|++.-+.--+.+.+|.||.+.|  .++.|.|.        +.+|+|+|+|.|++||......+ +..|.+|+..+..-
T Consensus       339 ~~i~V~kv~~~~P~~t~~GH~g~V--~alk~n~t--------g~LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  339 GCIHVCKVGEDRPVKTFIGHHGEV--NALKWNPT--------GSLLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTI  407 (524)
T ss_pred             ceEEEEEecCCCcceeeecccCce--EEEEECCC--------CceEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeE
Confidence            689999988778999999999987  46799997        78999999999999999876554 57787777543110


Q ss_pred             ccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                             .-.+.-++...| .| .||+++.|++|||||+..+. +..+|..|+.||.+|+|||||+|||+ +.|+.|.||
T Consensus       408 -------~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iw  479 (524)
T KOG0273|consen  408 -------KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIW  479 (524)
T ss_pred             -------eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEec
Confidence                   001111222223 34 69999999999999999884 78889999999999999999999999 999999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      +++    .|+..+.+.+.-+                      + |. -+||- .  |  ...+++..++-+.+=||.
T Consensus       480 s~~----~~~l~~s~~~~~~----------------------I-fe-l~Wn~-~--G--~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  480 STK----TGKLVKSYQGTGG----------------------I-FE-LCWNA-A--G--DKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ccc----chheeEeecCCCe----------------------E-EE-EEEcC-C--C--CEEEEEecCCCceEEEec
Confidence            986    5766555543321                      1 11 23442 1  3  355666778888887774

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=5.8e-19  Score=199.36  Aligned_cols=233  Identities=15%  Similarity=0.176  Sum_probs=172.1

Q ss_pred             EEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          259 LTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       259 LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      --++| |-|-+++.+-   .|++|.-.-+     +.+.+|..| .|++|+.|.|...+        .+++++|      .
T Consensus        13 KglsFHP~rPwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~FH~~qpl--------FVSGGDD------y   73 (1202)
T KOG0292|consen   13 KGLSFHPKRPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVDFHPTQPL--------FVSGGDD------Y   73 (1202)
T ss_pred             cceecCCCCCEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceeeecCCCCe--------EEecCCc------c
Confidence            33456 6777777663   4555442111     234456666 46788998888653        3344443      7


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      +|++|+..+.+|+-+|.||-+.|+  .+.|++.        =..|+|+|+|.|||+|+..+++| |..|.||+.-     
T Consensus        74 kIkVWnYk~rrclftL~GHlDYVR--t~~FHhe--------yPWIlSASDDQTIrIWNwqsr~~-iavltGHnHY-----  137 (1202)
T KOG0292|consen   74 KIKVWNYKTRRCLFTLLGHLDYVR--TVFFHHE--------YPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHY-----  137 (1202)
T ss_pred             EEEEEecccceehhhhccccceeE--EeeccCC--------CceEEEccCCCeEEEEeccCCce-EEEEecCceE-----
Confidence            999999999999999999999985  5699987        25899999999999999999876 6788888753     


Q ss_pred             cccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc----------------------------ccccccCCCC
Q 047036          414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ----------------------------AKTAFPGLGS  464 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~----------------------------akt~L~GH~d  464 (634)
                                +-|+.|.|.. .|||||.|.|||+||+.+.|.                            .|..|.||.-
T Consensus       138 ----------VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR  207 (1202)
T KOG0292|consen  138 ----------VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR  207 (1202)
T ss_pred             ----------EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence                      4688899854 999999999999999977541                            1234668999


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      .|+-++|.|-=-.|+| +.|..|+||...-  -+-=.+-+..||+++.                  ..+-|+|-     +
T Consensus       208 GVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnV------------------ssvlfhp~-----q  262 (1202)
T KOG0292|consen  208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNV------------------SSVLFHPH-----Q  262 (1202)
T ss_pred             ccceEEecCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCc------------------ceEEecCc-----c
Confidence            9999999999999999 8899999998542  1222334567787643                  23455554     1


Q ss_pred             cCCCCceEEEE-EcCCeEEEEeChh
Q 047036          544 ENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       544 ~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                            ..|++ |.|+.+.|||+.+
T Consensus       263 ------~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  263 ------DLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             ------ceeEecCCCccEEEEeccc
Confidence                  35655 7899999999974

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.80  E-value=6.5e-18  Score=189.78  Aligned_cols=228  Identities=15%  Similarity=0.223  Sum_probs=163.6

Q ss_pred             EEEeeeC-CCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGAL-DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~~-D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      +-++.++ ...+++.|   .+++||....+.     ....|.+|.         ..+.+.+-....+++++.|      .
T Consensus       252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----C~~~l~gh~---------stv~~~~~~~~~~~sgs~D------~  311 (537)
T KOG0274|consen  252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----CTHSLQGHT---------SSVRCLTIDPFLLVSGSRD------N  311 (537)
T ss_pred             ceeEEEecCCCEEEEEecCCcEEeEecCCCc-----EEEEecCCC---------ceEEEEEccCceEeeccCC------c
Confidence            3444442 34455555   588999854443     222344542         1222333444455566665      6


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      ||++|++++|++++.+.||.+.|+ + +.++          +..+++|+.|++|++||+++.++ +.+|.||..+|    
T Consensus       312 tVkVW~v~n~~~l~l~~~h~~~V~-~-v~~~----------~~~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V----  374 (537)
T KOG0274|consen  312 TVKVWDVTNGACLNLLRGHTGPVN-C-VQLD----------EPLLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRV----  374 (537)
T ss_pred             eEEEEeccCcceEEEeccccccEE-E-EEec----------CCEEEEEecCceEEEEEhhhcee-eeeecCCcceE----
Confidence            999999999999999999999764 3 3444          36999999999999999997654 78998887654    


Q ss_pred             cccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          414 QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                                 .++.+.+..++++||.|++||+||+.++++++.+|.+|+.-|.++.  ..++.|++ +.|++|++||+.
T Consensus       375 -----------~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  375 -----------YSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             -----------EEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecc
Confidence                       5665555478999999999999999987348899999999885554  46789999 999999999986


Q ss_pred             cccCCCCeeeeecCC-CCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036          493 FSDKDGKTKTGFSGR-MGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK  569 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh-~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~  569 (634)
                          .|+++.++.++ .+                     .+.|...        + ++..|+++.++.+.+||+....
T Consensus       442 ----~~~~~~~~~~~~~~---------------------~v~~l~~--------~-~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  442 ----EGECLRTLEGRHVG---------------------GVSALAL--------G-KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             ----cCceeeeeccCCcc---------------------cEEEeec--------C-cceEEEEecCCeeEEEecccCc
Confidence                78888888774 22                     1221111        1 3567788999999999998443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.79  E-value=6e-19  Score=186.76  Aligned_cols=205  Identities=13%  Similarity=0.150  Sum_probs=154.4

Q ss_pred             EEEeee-CCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEE
Q 047036          258 SLTLGA-LDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQ  336 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIr  336 (634)
                      +-+|-. +++.-++.|+.-|=|.+-.+-      ..+|..-   .-..=+|...|-...++..++++..+      +.|+
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~------~fnFEti---lQaHDs~Vr~m~ws~~g~wmiSgD~g------G~iK  163 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGT------SFNFETI---LQAHDSPVRTMKWSHNGTWMISGDKG------GMIK  163 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCc------eeeHHHH---hhhhcccceeEEEccCCCEEEEcCCC------ceEE
Confidence            455666 888778877766666553321      2232210   11112567777777777777776553      8999


Q ss_pred             EEeCCCCcEEEEEeccC-CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036          337 QLDIETGKIVTEWKFEK-DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG  415 (634)
Q Consensus       337 lWDleTGK~V~~lkgH~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g  415 (634)
                      +|+.. -..|..+.+|. ..|  ..++|+|.        ...++|+|+|++|+|||.+..... ..|.||.         
T Consensus       164 yWqpn-mnnVk~~~ahh~eaI--RdlafSpn--------DskF~t~SdDg~ikiWdf~~~kee-~vL~GHg---------  222 (464)
T KOG0284|consen  164 YWQPN-MNNVKIIQAHHAEAI--RDLAFSPN--------DSKFLTCSDDGTIKIWDFRMPKEE-RVLRGHG---------  222 (464)
T ss_pred             ecccc-hhhhHHhhHhhhhhh--heeccCCC--------CceeEEecCCCeEEEEeccCCchh-heeccCC---------
Confidence            99988 46677777776 655  46699996        578999999999999999875432 3455543         


Q ss_pred             cccccCcceEEEEECCC-CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036          416 HQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF  493 (634)
Q Consensus       416 ~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~  493 (634)
                            ..+.|+...|. |.|||||.|+.|+|||.++++ ++.+|.+|...|.+|.|+|+|.|||+ |.|..++++|++ 
T Consensus       223 ------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR-  294 (464)
T KOG0284|consen  223 ------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR-  294 (464)
T ss_pred             ------CCcceeccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh-
Confidence                  24578888775 699999999999999999985 88999999999999999999999999 999999999987 


Q ss_pred             ccCCCCeeeeecCCCC
Q 047036          494 SDKDGKTKTGFSGRMG  509 (634)
Q Consensus       494 ~~~~G~~~~gF~gh~~  509 (634)
                         .-+.+..|.+|..
T Consensus       295 ---~mkEl~~~r~Hkk  307 (464)
T KOG0284|consen  295 ---TMKELFTYRGHKK  307 (464)
T ss_pred             ---HhHHHHHhhcchh
Confidence               3455677888874

>PTZ00420 coronin; Provisional

Probab=99.79  E-value=2.1e-17  Score=186.58  Aligned_cols=179  Identities=10%  Similarity=0.023  Sum_probs=127.5

Q ss_pred             cCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc------
Q 047036          272 DLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK------  344 (634)
Q Consensus       272 G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK------  344 (634)
                      |..+++++....+-.  .....|.+|. ++..++|+|.       +.++|++++.|      ++|++||+.++.      
T Consensus        50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~-------~~~lLASgS~D------gtIrIWDi~t~~~~~~~i  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPC-------FSEILASGSED------LTIRVWEIPHNDESVKEI  114 (568)
T ss_pred             CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCC-------CCCEEEEEeCC------CeEEEEECCCCCcccccc
Confidence            455555554332211  1234566663 3355556654       24567777765      799999998752      


Q ss_pred             --EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCc
Q 047036          345 --IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGT  422 (634)
Q Consensus       345 --~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~  422 (634)
                        .+..+.+|...|  ..++|+|++       ..++++|+.|++|++||++++.. +..+. |               ..
T Consensus       115 ~~p~~~L~gH~~~V--~sVaf~P~g-------~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~---------------~~  168 (568)
T PTZ00420        115 KDPQCILKGHKKKI--SIIDWNPMN-------YYIMCSSGFDSFVNIWDIENEKR-AFQIN-M---------------PK  168 (568)
T ss_pred             ccceEEeecCCCcE--EEEEECCCC-------CeEEEEEeCCCeEEEEECCCCcE-EEEEe-c---------------CC
Confidence              345789999976  466999982       13568999999999999998653 33332 1               12


Q ss_pred             ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE-----EEECCCCCEEEE-EcCC----cEEEEEc
Q 047036          423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH-----VDVTYDGKWILG-TTDT----YLILICT  491 (634)
Q Consensus       423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its-----VdfSpDGk~LlS-S~D~----tIrLWD~  491 (634)
                      .+.+++++++| .||+++.|++|||||+++++ ....+.+|.+.+.+     ..|++|+.+|++ +.|+    +|+|||+
T Consensus       169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl  247 (568)
T PTZ00420        169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL  247 (568)
T ss_pred             cEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence            47899999999 78889999999999998864 66789999887543     346799999998 7664    7999998


Q ss_pred             c
Q 047036          492 L  492 (634)
Q Consensus       492 ~  492 (634)
                      +
T Consensus       248 r  248 (568)
T PTZ00420        248 K  248 (568)
T ss_pred             C
Confidence            6

>PTZ00421 coronin; Provisional

Probab=99.79  E-value=2.7e-17  Score=183.39  Aligned_cols=205  Identities=16%  Similarity=0.079  Sum_probs=142.7

Q ss_pred             CcEEEeee-C-CCeEEEec---CeeeEEEccCCceec--ceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          256 VQSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIHN--KGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       256 ~~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~~--~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      +.++++.+ + |+.+++.|   .+|.||.....++..  ...+..+.+|. .+..+.|+|..       .++|++++.| 
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-------~~iLaSgs~D-  147 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-------MNVLASAGAD-  147 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-------CCEEEEEeCC-
Confidence            45788888 5 77777764   589999876554311  11234566662 23445555542       2467777665 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                           ++|++||+++|+.+..+.+|.+.|  ..++|+|+        +.+|++|+.|++|++||+|++. .+..+.+|.+
T Consensus       148 -----gtVrIWDl~tg~~~~~l~~h~~~V--~sla~spd--------G~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~  211 (493)
T PTZ00421        148 -----MVVNVWDVERGKAVEVIKCHSDQI--TSLEWNLD--------GSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHAS  211 (493)
T ss_pred             -----CEEEEEECCCCeEEEEEcCCCCce--EEEEEECC--------CCEEEEecCCCEEEEEECCCCc-EEEEEecCCC
Confidence                 799999999999999999999976  45699998        6899999999999999999865 4567766654


Q ss_pred             CccccccccccccCcceEEEEECCC-CeEEEEE----CCCcEEEEeccccccccccccC-CCCCeEEEEECCCCCEEEE-
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGS----LDGKIRLYSKTSMRQAKTAFPG-LGSPITHVDVTYDGKWILG-  480 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS----~DGtIRLWD~~t~r~akt~L~G-H~d~ItsVdfSpDGk~LlS-  480 (634)
                      .+              ...+.+.++ +.|++++    .|++|+|||++........+.. +...+..+.|+|||++|++ 
T Consensus       212 ~~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg  277 (493)
T PTZ00421        212 AK--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG  277 (493)
T ss_pred             Cc--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE
Confidence            21              123344554 4666543    5899999998764323333332 3345667789999999987 


Q ss_pred             E-cCCcEEEEEcccccCCCCeee
Q 047036          481 T-TDTYLILICTLFSDKDGKTKT  502 (634)
Q Consensus       481 S-~D~tIrLWD~~~~~~~G~~~~  502 (634)
                      + .|++|++||+.    +++...
T Consensus       278 gkgDg~Iriwdl~----~~~~~~  296 (493)
T PTZ00421        278 SKGEGNIRCFELM----NERLTF  296 (493)
T ss_pred             EeCCCeEEEEEee----CCceEE
Confidence            5 49999999986    455544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.1e-18  Score=197.06  Aligned_cols=249  Identities=15%  Similarity=0.167  Sum_probs=173.8

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      +|.+|.|...-        ||++      -|+++|++||-.-|.++.+|..|.+.|+  -++|+|.        +.+++|
T Consensus        13 KglsFHP~rPw--------ILts------lHsG~IQlWDYRM~tli~rFdeHdGpVR--gv~FH~~--------qplFVS   68 (1202)
T KOG0292|consen   13 KGLSFHPKRPW--------ILTS------LHSGVIQLWDYRMGTLIDRFDEHDGPVR--GVDFHPT--------QPLFVS   68 (1202)
T ss_pred             cceecCCCCCE--------EEEe------ecCceeeeehhhhhhHHhhhhccCCccc--eeeecCC--------CCeEEe
Confidence            78889998753        3444      2568999999999999999999999986  5599998        579999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      |++|..|++|+..+++| +-+|.||.+          |     +..+.|.+.- .|+|+|.|.|||+|+.++. ++...|
T Consensus        69 GGDDykIkVWnYk~rrc-lftL~GHlD----------Y-----VRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavl  131 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRC-LFTLLGHLD----------Y-----VRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVL  131 (1202)
T ss_pred             cCCccEEEEEeccccee-hhhhccccc----------e-----eEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEE
Confidence            99999999999998876 467777754          3     3455666654 8999999999999999995 699999


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecC--C----C---ccccC
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTP--L----D---SHLAG  529 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~P--e----~---~~~~g  529 (634)
                      .||...|.+-.|.|....|+| |.|.|||+||+.--..+...-.+|..++...   +.--.|.+  .    |   .|-.|
T Consensus       132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~---~~~~dLfg~~DaVVK~VLEGHDRG  208 (1202)
T KOG0292|consen  132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ---QGNSDLFGQTDAVVKHVLEGHDRG  208 (1202)
T ss_pred             ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc---ccchhhcCCcCeeeeeeecccccc
Confidence            999999999999999999999 9999999999741110100000122222100   00000111  0    0   01111


Q ss_pred             C-CcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccC--
Q 047036          530 T-DNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHD--  605 (634)
Q Consensus       530 ~-~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d--  605 (634)
                      . -..|+|.           --.||+ +.|+-|.+|-+..-+.=..+              ..++|-.+|..+-| |+  
T Consensus       209 VNwaAfhpT-----------lpliVSG~DDRqVKlWrmnetKaWEvD--------------tcrgH~nnVssvlf-hp~q  262 (1202)
T KOG0292|consen  209 VNWAAFHPT-----------LPLIVSGADDRQVKLWRMNETKAWEVD--------------TCRGHYNNVSSVLF-HPHQ  262 (1202)
T ss_pred             cceEEecCC-----------cceEEecCCcceeeEEEeccccceeeh--------------hhhcccCCcceEEe-cCcc
Confidence            1 1345544           137777 45788999998766654444              34567777887777 77  


Q ss_pred             ccccCCCCCCCEEE
Q 047036          606 KFAVTDSPEAPLVV  619 (634)
Q Consensus       606 ~f~~~~~~~~~iiv  619 (634)
                      +-..+.+.|+.|=|
T Consensus       263 ~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  263 DLILSNSEDKSIRV  276 (1202)
T ss_pred             ceeEecCCCccEEE
Confidence            44556555555433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.79  E-value=1.4e-18  Score=186.87  Aligned_cols=204  Identities=17%  Similarity=0.206  Sum_probs=155.3

Q ss_pred             eEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCC
Q 047036          290 VSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDT  367 (634)
Q Consensus       290 ~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~  367 (634)
                      .+.+++||+ .++...|.|.+..       +||+++.|      +.|+||++-. |+||++|.||...|.  -++|+++ 
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~h-------LlLS~gmD------~~vklW~vy~~~~~lrtf~gH~k~Vr--d~~~s~~-  269 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGH-------LLLSGGMD------GLVKLWNVYDDRRCLRTFKGHRKPVR--DASFNNC-  269 (503)
T ss_pred             heeeccCCccccchhhhccceee-------EEEecCCC------ceEEEEEEecCcceehhhhcchhhhh--hhhcccc-
Confidence            456677773 3467778887653       46777775      7999999977 999999999999875  4588887 


Q ss_pred             CCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEE
Q 047036          368 KSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIR  445 (634)
Q Consensus       368 K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIR  445 (634)
                             |..++|+|.|++|++||+.++++ ++.+.                .+....|+-|.|++  .+++|+.|+.||
T Consensus       270 -------g~~fLS~sfD~~lKlwDtETG~~-~~~f~----------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~  325 (503)
T KOG0282|consen  270 -------GTSFLSASFDRFLKLWDTETGQV-LSRFH----------------LDKVPTCVKFHPDNQNIFLVGGSDKKIR  325 (503)
T ss_pred             -------CCeeeeeecceeeeeeccccceE-EEEEe----------------cCCCceeeecCCCCCcEEEEecCCCcEE
Confidence                   78999999999999999999875 34442                33446799999988  588999999999


Q ss_pred             EEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036          446 LYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD  524 (634)
Q Consensus       446 LWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~  524 (634)
                      .||.++++ .......|-.+|..|.|=++|++.++ |.|+++|+|+..                   +|.|..+.+.|+.
T Consensus       326 ~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~-------------------~~v~ik~i~~~~~  385 (503)
T KOG0282|consen  326 QWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR-------------------IPVPIKNIADPEM  385 (503)
T ss_pred             EEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC-------------------CCccchhhcchhh
Confidence            99998874 77788889999999999999999998 889999999964                   2455555544432


Q ss_pred             ccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          525 SHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       525 ~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      -..  ..+...|.        +   .++++ |-|+++.|+...
T Consensus       386 hsm--P~~~~~P~--------~---~~~~aQs~dN~i~ifs~~  415 (503)
T KOG0282|consen  386 HTM--PCLTLHPN--------G---KWFAAQSMDNYIAIFSTV  415 (503)
T ss_pred             ccC--cceecCCC--------C---CeehhhccCceEEEEecc
Confidence            111  12333333        2   45555 778888888754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.78  E-value=4.9e-19  Score=184.46  Aligned_cols=176  Identities=15%  Similarity=0.225  Sum_probs=138.5

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI  398 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~  398 (634)
                      .|+++..|      +||++||..+-.+++.+.||++.|    +++-.+        ...|+|||+|.||++||..++++ 
T Consensus       209 kiVSGlrD------nTikiWD~n~~~c~~~L~GHtGSV----LCLqyd--------~rviisGSSDsTvrvWDv~tge~-  269 (499)
T KOG0281|consen  209 KIVSGLRD------NTIKIWDKNSLECLKILTGHTGSV----LCLQYD--------ERVIVSGSSDSTVRVWDVNTGEP-  269 (499)
T ss_pred             hhhccccc------CceEEeccccHHHHHhhhcCCCcE----Eeeecc--------ceEEEecCCCceEEEEeccCCch-
Confidence            35555554      799999999999999999999976    344444        46999999999999999999765 


Q ss_pred             EEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccc--cccccccCCCCCeEEEEECCCCC
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSPITHVDVTYDGK  476 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~ItsVdfSpDGk  476 (634)
                      +.++.+|...|++               +.| .+|+++++|.|.+|++||....+  .+...|.||...|+.|+|+.  +
T Consensus       270 l~tlihHceaVLh---------------lrf-~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k  331 (499)
T KOG0281|consen  270 LNTLIHHCEAVLH---------------LRF-SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K  331 (499)
T ss_pred             hhHHhhhcceeEE---------------EEE-eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c
Confidence            6888888876642               222 37899999999999999987543  13346889999999999964  5


Q ss_pred             EEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-
Q 047036          477 WILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-  554 (634)
Q Consensus       477 ~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-  554 (634)
                      ||++ |.|.||++|++.    +++++.++.||...                     +.  -+.++     |   +.||+ 
T Consensus       332 yIVsASgDRTikvW~~s----t~efvRtl~gHkRG---------------------IA--ClQYr-----~---rlvVSG  376 (499)
T KOG0281|consen  332 YIVSASGDRTIKVWSTS----TCEFVRTLNGHKRG---------------------IA--CLQYR-----D---RLVVSG  376 (499)
T ss_pred             eEEEecCCceEEEEecc----ceeeehhhhccccc---------------------ce--ehhcc-----C---eEEEec
Confidence            9999 999999999986    78888888888631                     11  01222     3   67777 


Q ss_pred             EcCCeEEEEeCh
Q 047036          555 TVGKFSVIWDFQ  566 (634)
Q Consensus       555 Stg~~viiWdl~  566 (634)
                      |+|..|.+||.+
T Consensus       377 SSDntIRlwdi~  388 (499)
T KOG0281|consen  377 SSDNTIRLWDIE  388 (499)
T ss_pred             CCCceEEEEecc
Confidence            789999999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=2.9e-17  Score=185.62  Aligned_cols=186  Identities=17%  Similarity=0.302  Sum_probs=139.4

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      ..+.||+++.|      +|||||++.+-+|+..|. |.+.|  ++++|+|--       .++++|||-|+.||||++-..
T Consensus       379 Kn~fLLSSSMD------KTVRLWh~~~~~CL~~F~-HndfV--TcVaFnPvD-------DryFiSGSLD~KvRiWsI~d~  442 (712)
T KOG0283|consen  379 KNNFLLSSSMD------KTVRLWHPGRKECLKVFS-HNDFV--TCVAFNPVD-------DRYFISGSLDGKVRLWSISDK  442 (712)
T ss_pred             cCCeeEecccc------ccEEeecCCCcceeeEEe-cCCee--EEEEecccC-------CCcEeecccccceEEeecCcC
Confidence            34578888776      799999999999999996 88887  567999962       589999999999999998643


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc--cc-------CCCCC
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA--FP-------GLGSP  465 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~--L~-------GH~d~  465 (634)
                       +           |..|+.-+++     ++++|++|+| +.++|+.+|.+|+|+..+.+ ..+.  +.       .|. .
T Consensus       443 -~-----------Vv~W~Dl~~l-----ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~-r  503 (712)
T KOG0283|consen  443 -K-----------VVDWNDLRDL-----ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGK-R  503 (712)
T ss_pred             -e-----------eEeehhhhhh-----heeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCc-e
Confidence             2           2346555543     6899999999 78999999999999987642 2221  11       234 8


Q ss_pred             eEEEEECCCCC--EEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          466 ITHVDVTYDGK--WILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       466 ItsVdfSpDGk--~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      ||++-|.|--.  .||+|.|..|||+|.+    +-+++..|+|.-...                     +=+.|.|+.  
T Consensus       504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~---------------------SQ~~Asfs~--  556 (712)
T KOG0283|consen  504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTS---------------------SQISASFSS--  556 (712)
T ss_pred             eeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCC---------------------cceeeeEcc--
Confidence            99999986544  7888999999999975    345667787765311                     123566653  


Q ss_pred             cCCCCceEEEE-EcCCeEEEEeChh
Q 047036          544 ENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       544 ~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                       .|   ++||+ |.|.+|+||+++.
T Consensus       557 -Dg---k~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  557 -DG---KHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             -CC---CEEEEeecCceEEEEeCCC
Confidence             14   56655 7899999999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.78  E-value=9.9e-18  Score=186.18  Aligned_cols=270  Identities=16%  Similarity=0.202  Sum_probs=184.8

Q ss_pred             EEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          258 SLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       258 ~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      +.+|+..++..++.|   .++.||....++...   +..|.++     ..|.+....+...|+-.|+.++.|      .+
T Consensus        17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~---~~~~~~~-----~g~i~~~i~y~e~~~~~l~~g~~D------~~   82 (745)
T KOG0301|consen   17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE---THAFEGP-----KGFIANSICYAESDKGRLVVGGMD------TT   82 (745)
T ss_pred             hheeEecCCeEEeecCCCCceeeeeccCccccc---ceecccC-----cceeeccceeccccCcceEeeccc------ce
Confidence            456666677777754   478889876654322   1223332     334444333333555668888876      79


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      |.+|-+.++..+.+|+||+..|  |.++...+         ..++|||.|.|+++|-+-   .++..+.||..+|     
T Consensus        83 i~v~~~~~~~P~~~LkgH~snV--C~ls~~~~---------~~~iSgSWD~TakvW~~~---~l~~~l~gH~asV-----  143 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNV--CSLSIGED---------GTLISGSWDSTAKVWRIG---ELVYSLQGHTASV-----  143 (745)
T ss_pred             EEEEecCCCCchhhhhccccce--eeeecCCc---------CceEecccccceEEecch---hhhcccCCcchhe-----
Confidence            9999999999999999999864  54444433         348999999999999873   3456788887664     


Q ss_pred             ccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccc
Q 047036          415 GHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFS  494 (634)
Q Consensus       415 g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~  494 (634)
                                .++++-|.+.+++||.|.+||||..  + ....+|.||.+.|++|++=+++.+|-++.|+.||+|+.   
T Consensus       144 ----------WAv~~l~e~~~vTgsaDKtIklWk~--~-~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~---  207 (745)
T KOG0301|consen  144 ----------WAVASLPENTYVTGSADKTIKLWKG--G-TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL---  207 (745)
T ss_pred             ----------eeeeecCCCcEEeccCcceeeeccC--C-chhhhhccchhheeeeEEecCCCeEeecCCceEEEEec---
Confidence                      4677777789999999999999995  3 36788999999999999999988876699999999995   


Q ss_pred             cCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccc
Q 047036          495 DKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAH  573 (634)
Q Consensus       495 ~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~  573 (634)
                        +|+++..+.||..                +.  ..+.-...        +   ..||+ +.|+.+.||+-....+   
T Consensus       208 --~ge~l~~~~ghtn----------------~v--Ysis~~~~--------~---~~Ivs~gEDrtlriW~~~e~~q---  253 (745)
T KOG0301|consen  208 --DGEVLLEMHGHTN----------------FV--YSISMALS--------D---GLIVSTGEDRTLRIWKKDECVQ---  253 (745)
T ss_pred             --cCceeeeeeccce----------------EE--EEEEecCC--------C---CeEEEecCCceEEEeecCceEE---
Confidence              6999999998874                11  11220101        1   35655 7899999999762221   


Q ss_pred             cccccccCCcceeeEEEeccCCCeeeeccc-cCccccCCCCCCCEEEEcCCcee
Q 047036          574 ECYRNQQGLKSCYCYKIVLKDESIVESRFM-HDKFAVTDSPEAPLVVATPMKVS  626 (634)
Q Consensus       574 ~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~-~d~f~~~~~~~~~iivA~~~~v~  626 (634)
                                     .|....-+|=++.++ ...-..|+| |.-|-|=|..+..
T Consensus       254 ---------------~I~lPttsiWsa~~L~NgDIvvg~S-DG~VrVfT~~k~R  291 (745)
T KOG0301|consen  254 ---------------VITLPTTSIWSAKVLLNGDIVVGGS-DGRVRVFTVDKDR  291 (745)
T ss_pred             ---------------EEecCccceEEEEEeeCCCEEEecc-CceEEEEEecccc
Confidence                           222223344444443 222334664 6777776655443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=2.9e-17  Score=174.27  Aligned_cols=259  Identities=17%  Similarity=0.202  Sum_probs=187.4

Q ss_pred             CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+.+--+-| +++.|++++   .+..+|....++. ++ ...++-+|       ..|+.-+++++|.+.|++++.++   
T Consensus       224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~k-l~~tlvgh-------~~~V~yi~wSPDdryLlaCg~~e---  291 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FK-LKKTLVGH-------SQPVSYIMWSPDDRYLLACGFDE---  291 (519)
T ss_pred             CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-ee-eeeeeecc-------cCceEEEEECCCCCeEEecCchH---
Confidence            344555666 677777765   4677788766652 22 22344455       35677778888889999998864   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe-ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEWK-FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                         .+++||+.||.+++.+. +|...|  ..+++.||        |..+++||.|++|..||+...  +....       
T Consensus       292 ---~~~lwDv~tgd~~~~y~~~~~~S~--~sc~W~pD--------g~~~V~Gs~dr~i~~wdlDgn--~~~~W-------  349 (519)
T KOG0293|consen  292 ---VLSLWDVDTGDLRHLYPSGLGFSV--SSCAWCPD--------GFRFVTGSPDRTIIMWDLDGN--ILGNW-------  349 (519)
T ss_pred             ---heeeccCCcchhhhhcccCcCCCc--ceeEEccC--------CceeEecCCCCcEEEecCCcc--hhhcc-------
Confidence               69999999999998884 445665  45699999        568999999999999998742  22221       


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                             +++....+.++|.++|| ++++-..|..||||++.+. .. ..+-....+|+++++|.||++++. -.+..|+
T Consensus       350 -------~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~d-r~lise~~~its~~iS~d~k~~LvnL~~qei~  420 (519)
T KOG0293|consen  350 -------EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VD-RGLISEEQPITSFSISKDGKLALVNLQDQEIH  420 (519)
T ss_pred             -------cccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hh-hccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence                   23344568899999999 7877789999999998762 22 224445679999999999999998 7899999


Q ss_pred             EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      |||+.    +.+.++.|.||.-.                     .-..+.+|-     |.++..|++ |.|.-|+||+..
T Consensus       421 LWDl~----e~~lv~kY~Ghkq~---------------------~fiIrSCFg-----g~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  421 LWDLE----ENKLVRKYFGHKQG---------------------HFIIRSCFG-----GGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             Eeecc----hhhHHHHhhccccc---------------------ceEEEeccC-----CCCcceEEecCCCceEEEEEcc
Confidence            99986    67777888888621                     122466773     455677877 679999999987


Q ss_pred             hhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          567 QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       567 ~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                         +|++-             -.+.+|...|+.+..
T Consensus       471 ---sgkll-------------~~LsGHs~~vNcVsw  490 (519)
T KOG0293|consen  471 ---SGKLL-------------AVLSGHSKTVNCVSW  490 (519)
T ss_pred             ---CCcee-------------EeecCCcceeeEEec
Confidence               34443             256666666666655

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.7e-17  Score=166.40  Aligned_cols=193  Identities=13%  Similarity=0.152  Sum_probs=153.8

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      -|..+.-++.|++..|++++|      +|||||++.+|-+|+++.||...|. -+ +.+.|        +..+++|+.|+
T Consensus        18 gaV~avryN~dGnY~ltcGsd------rtvrLWNp~rg~liktYsghG~EVl-D~-~~s~D--------nskf~s~GgDk   81 (307)
T KOG0316|consen   18 GAVRAVRYNVDGNYCLTCGSD------RTVRLWNPLRGALIKTYSGHGHEVL-DA-ALSSD--------NSKFASCGGDK   81 (307)
T ss_pred             cceEEEEEccCCCEEEEcCCC------ceEEeecccccceeeeecCCCceee-ec-ccccc--------ccccccCCCCc
Confidence            466777789999999999987      7999999999999999999998762 32 55655        57899999999


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccccCCC
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLG  463 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~  463 (634)
                      .|.+||+.+++ +++.+.||..               ++.++.|+.+. -|+|||.|.+||+||.++.+ .+.+.|....
T Consensus        82 ~v~vwDV~TGk-v~Rr~rgH~a---------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   82 AVQVWDVNTGK-VDRRFRGHLA---------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             eEEEEEcccCe-eeeecccccc---------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence            99999999975 5678887764               35788999887 68999999999999987632 3556777788


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV  542 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~  542 (634)
                      +.|.+|+++  +.-|++ |.|+++|.+|++    +|+....|-||--                    ..++|+++     
T Consensus       146 D~V~Si~v~--~heIvaGS~DGtvRtydiR----~G~l~sDy~g~pi--------------------t~vs~s~d-----  194 (307)
T KOG0316|consen  146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIR----KGTLSSDYFGHPI--------------------TSVSFSKD-----  194 (307)
T ss_pred             CceeEEEec--ccEEEeeccCCcEEEEEee----cceeehhhcCCcc--------------------eeEEecCC-----
Confidence            999999997  456777 999999999998    5665544444421                    24667766     


Q ss_pred             ccCCCCceEEEEEcCCeEEEEeCh
Q 047036          543 TENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       543 t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                         |  .-.++++-|..+.+-|-+
T Consensus       195 ---~--nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  195 ---G--NCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             ---C--CEEEEeeccceeeecccc
Confidence               3  356778889999998865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=4.6e-17  Score=182.05  Aligned_cols=276  Identities=15%  Similarity=0.225  Sum_probs=191.0

Q ss_pred             EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      +++++. .|+..+++|  ..|.+|......     .+.++... .+.++.|-|-.        +.|+.+..+      +.
T Consensus       376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~k-----ciRTi~~~-y~l~~~Fvpgd--------~~Iv~G~k~------Ge  435 (888)
T KOG0306|consen  376 VRSLCVSSDSILLASGAGESIKIWNRDTLK-----CIRTITCG-YILASKFVPGD--------RYIVLGTKN------GE  435 (888)
T ss_pred             eeEEEeecCceeeeecCCCcEEEEEccCcc-----eeEEeccc-cEEEEEecCCC--------ceEEEeccC------Cc
Confidence            666666 567777766  788888865432     23333221 22445555443        345666543      78


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      |-++|+..+.++.+.+.|.+.+  +.++.+||        +.-+++||.|+||++||...    +....|....++...+
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaI--Wsi~~~pD--------~~g~vT~saDktVkfWdf~l----~~~~~gt~~k~lsl~~  501 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAI--WSISLSPD--------NKGFVTGSADKTVKFWDFKL----VVSVPGTQKKVLSLKH  501 (888)
T ss_pred             eEEEEeehhhhhhhhhccccce--eeeeecCC--------CCceEEecCCcEEEEEeEEE----EeccCcccceeeeecc
Confidence            9999999999999999999974  67799999        45699999999999999752    1111111111111111


Q ss_pred             ccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          415 GHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       415 g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .........+.|+.+|||| +||+|=.|+|+++|=+.+++ ..-.|-||.-||+|+++|||++.|++ |.|+.|++|-+.
T Consensus       502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            1223345678999999999 89999999999999998874 66788999999999999999999999 999999999887


Q ss_pred             cccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccc
Q 047036          493 FSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSA  572 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~  572 (634)
                      +    |.|-..|-+|-...                  ..+.|.|...          ..-.++.|+.|.-||-++..   
T Consensus       581 F----GDCHKS~fAHdDSv------------------m~V~F~P~~~----------~FFt~gKD~kvKqWDg~kFe---  625 (888)
T KOG0306|consen  581 F----GDCHKSFFAHDDSV------------------MSVQFLPKTH----------LFFTCGKDGKVKQWDGEKFE---  625 (888)
T ss_pred             c----chhhhhhhcccCce------------------eEEEEcccce----------eEEEecCcceEEeechhhhh---
Confidence            6    55666677775421                  2467776511          23445779999999865432   


Q ss_pred             ccccccccCCcceeeEEEeccCCCeeeeccccCc--cccCCCCCCCE
Q 047036          573 HECYRNQQGLKSCYCYKIVLKDESIVESRFMHDK--FAVTDSPEAPL  617 (634)
Q Consensus       573 ~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~--f~~~~~~~~~i  617 (634)
                        +.|           ++.+|...|-+... .++  |.++++.|+.|
T Consensus       626 --~iq-----------~L~~H~~ev~cLav-~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  626 --EIQ-----------KLDGHHSEVWCLAV-SPNGSFVVSSSHDKSI  658 (888)
T ss_pred             --hhe-----------eeccchheeeeeEE-cCCCCeEEeccCCcee
Confidence              221           45666666665554 444  66676655554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=1.2e-17  Score=186.53  Aligned_cols=150  Identities=11%  Similarity=0.129  Sum_probs=127.7

Q ss_pred             CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      +++++++|.        .++|.+++.|      +|.++|+++.++++.+|.||+.+|  ..|.|+|.        .+.++
T Consensus       466 IN~Vaia~n--------dkLiAT~SqD------ktaKiW~le~~~l~~vLsGH~RGv--w~V~Fs~~--------dq~la  521 (775)
T KOG0319|consen  466 INCVAIAPN--------DKLIATGSQD------KTAKIWDLEQLRLLGVLSGHTRGV--WCVSFSKN--------DQLLA  521 (775)
T ss_pred             ccceEecCC--------CceEEecccc------cceeeecccCceEEEEeeCCccce--EEEEeccc--------cceeE
Confidence            355555554        4556667765      799999999999999999999997  56799997        57999


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      |+|.|+|||||-+.+..| ++++.||...|+              .+...+.+.+|+||+.||.||||++.+. .|..+|
T Consensus       522 T~SgD~TvKIW~is~fSC-lkT~eGH~~aVl--------------ra~F~~~~~qliS~~adGliKlWnikt~-eC~~tl  585 (775)
T KOG0319|consen  522 TCSGDKTVKIWSISTFSC-LKTFEGHTSAVL--------------RASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTL  585 (775)
T ss_pred             eccCCceEEEEEecccee-eeeecCccceeE--------------eeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhh
Confidence            999999999999998766 699999987662              3333344448999999999999999986 589999


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                      .+|.+.|++++.+|++..+++ +.|+.|.+|
T Consensus       586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  586 DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            999999999999999999999 999999999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.7e-17  Score=180.99  Aligned_cols=152  Identities=11%  Similarity=0.123  Sum_probs=125.9

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC-cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG-KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG-K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      +..+..|...        .+|++++|      .+|++||-+.+ .+.++|+||+..| +.| +|.|.-       .+.+|
T Consensus       101 R~iavHPt~P--------~vLtsSDD------m~iKlW~we~~wa~~qtfeGH~HyV-Mqv-~fnPkD-------~ntFa  157 (794)
T KOG0276|consen  101 RSIAVHPTLP--------YVLTSSDD------MTIKLWDWENEWACEQTFEGHEHYV-MQV-AFNPKD-------PNTFA  157 (794)
T ss_pred             eeeeecCCCC--------eEEecCCc------cEEEEeeccCceeeeeEEcCcceEE-EEE-EecCCC-------cccee
Confidence            3444556554        35566654      79999998865 6889999999988 354 999961       47999


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC---eEEEEECCCcEEEEecccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG---SIVVGSLDGKIRLYSKTSMRQAK  456 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG---~IASGS~DGtIRLWD~~t~r~ak  456 (634)
                      |||-|+||++|.+-+..+ .-+|.||...|               .|+.+-+.|   +|+||+.|.+||+||-++. +|.
T Consensus       158 S~sLDrTVKVWslgs~~~-nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV  220 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHP-NFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCV  220 (794)
T ss_pred             eeeccccEEEEEcCCCCC-ceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchH-HHH
Confidence            999999999999987654 56888877654               577776666   9999999999999999985 699


Q ss_pred             ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          457 TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ++|.||..-|..+.|.|.=-+|+| |.|+|+|||...
T Consensus       221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             HHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence            999999999999999999999999 999999999865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.5e-17  Score=171.86  Aligned_cols=232  Identities=14%  Similarity=0.209  Sum_probs=156.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEE--ecccCCC---
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQ--NMVKGDS---  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq--~l~gh~s---  407 (634)
                      .|.++|.+++|+|+.++.||.+.|+  .+.|+|.        +.++++||.|++..||-....-.+-+  .-.+|++   
T Consensus       170 hTA~iWs~Esg~CL~~Y~GH~GSVN--sikfh~s--------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  170 HTARIWSLESGACLATYTGHTGSVN--SIKFHNS--------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             cceeEEeeccccceeeeccccccee--eEEeccc--------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            6999999999999999999999986  4599997        68999999999999998332100000  0001111   


Q ss_pred             --------Cccc---cccccccc--------cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE
Q 047036          408 --------PVLH---WTQGHQFS--------RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       408 --------~V~~---~~~g~~y~--------~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It  467 (634)
                              +-++   -+.+|...        +...+.|.-.-.+| ++++||.|.+.-|||+.++ .....|.||....+
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-EVVNILTGHDSELT  318 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-ceeccccCcchhcc
Confidence                    0000   00111110        11123333333455 8999999999999999998 48889999999999


Q ss_pred             EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCC
Q 047036          468 HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENG  546 (634)
Q Consensus       468 sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g  546 (634)
                      +++-.|..+.+++ |.|++.||||.+   ..-..+..|.||..                       .-+..-|+.    +
T Consensus       319 HcstHptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtd-----------------------tVTS~vF~~----d  368 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTD-----------------------TVTSVVFNT----D  368 (481)
T ss_pred             ccccCCcceEEEEeccCceeEeccch---hhcceeeeeccccc-----------------------ceeEEEEec----C
Confidence            9999999999998 999999999976   24445667777764                       224455652    1


Q ss_pred             CCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCc-
Q 047036          547 KQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMK-  624 (634)
Q Consensus       547 ~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~-  624 (634)
                         ..||+ |.|+.|.||||+....-                ..--+-+..|+-+.+       +.   ..-|+|+|+| 
T Consensus       369 ---d~vVSgSDDrTvKvWdLrNMRsp----------------lATIRtdS~~NRvav-------s~---g~~iIAiPhDN  419 (481)
T KOG0300|consen  369 ---DRVVSGSDDRTVKVWDLRNMRSP----------------LATIRTDSPANRVAV-------SK---GHPIIAIPHDN  419 (481)
T ss_pred             ---CceeecCCCceEEEeeeccccCc----------------ceeeecCCccceeEe-------ec---CCceEEeccCC
Confidence               24555 67899999999854421                122344566654333       32   2448899997 


Q ss_pred             --eeeeeccCCC
Q 047036          625 --VSSISLSGRR  634 (634)
Q Consensus       625 --v~~~~~~~~~  634 (634)
                        |..+.++|.|
T Consensus       420 RqvRlfDlnG~R  431 (481)
T KOG0300|consen  420 RQVRLFDLNGNR  431 (481)
T ss_pred             ceEEEEecCCCc
Confidence              5666666644

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.76  E-value=1.1e-16  Score=168.48  Aligned_cols=222  Identities=14%  Similarity=0.186  Sum_probs=159.5

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEE----EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVT----EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~----~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      ++++++.|      .||++|-.+-|..+-    .-+||...|. + ++..++        |..++|||.|++|++|+...
T Consensus       161 ~fvsas~D------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~-s-Vsv~~s--------gtr~~SgS~D~~lkiWs~~~  224 (423)
T KOG0313|consen  161 LFVSASMD------QTLRLWKWNVGENKVKALKVCRGHKRSVD-S-VSVDSS--------GTRFCSGSWDTMLKIWSVET  224 (423)
T ss_pred             eEEEecCC------ceEEEEEecCchhhhhHHhHhccccccee-E-EEecCC--------CCeEEeecccceeeecccCC
Confidence            56666665      699999988886543    3459999885 4 477777        78999999999999999221


Q ss_pred             C------------------------CceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecc
Q 047036          395 R------------------------SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKT  450 (634)
Q Consensus       395 ~------------------------~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~  450 (634)
                      .                        +.++.+|.||..               ++++|.+++.+.+.|+|.|-+||.||+.
T Consensus       225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~---------------~Vs~V~w~d~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE---------------PVSSVVWSDATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             CccccccccchhhhhhhhhhhcccccCceEEeccccc---------------ceeeEEEcCCCceEeecccceEEEEEee
Confidence            0                        112334444444               4578889988899999999999999999


Q ss_pred             ccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCe-eeeecCCCCCCCCCceeEeecCCCcccc
Q 047036          451 SMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKT-KTGFSGRMGNKIPAPRLLKLTPLDSHLA  528 (634)
Q Consensus       451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~-~~gF~gh~~~~~p~pr~L~L~Pe~~~~~  528 (634)
                      +++ .+.++.+ .-++++|+.+|.-+.||+ +.|.-|||||.+.+  .|.. .+.|.||.+                   
T Consensus       290 tg~-~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~--~gs~v~~s~~gH~n-------------------  346 (423)
T KOG0313|consen  290 TGG-LKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG--DGSVVSQSLIGHKN-------------------  346 (423)
T ss_pred             ccc-ceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC--CCceeEEeeecchh-------------------
Confidence            985 7777764 568999999999999999 99999999998743  3333 245666653                   


Q ss_pred             CCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          529 GTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       529 g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                          --+...|++ +    ++..+++ |.|+.+.+||+..-+.    +           -|.|-+|++.|-++..-....
T Consensus       347 ----wVssvkwsp-~----~~~~~~S~S~D~t~klWDvRS~k~----p-----------lydI~~h~DKvl~vdW~~~~~  402 (423)
T KOG0313|consen  347 ----WVSSVKWSP-T----NEFQLVSGSYDNTVKLWDVRSTKA----P-----------LYDIAGHNDKVLSVDWNEGGL  402 (423)
T ss_pred             ----hhhheecCC-C----CceEEEEEecCCeEEEEEeccCCC----c-----------ceeeccCCceEEEEeccCCce
Confidence                112344543 1    2445555 8899999999985442    1           489999999999988844445


Q ss_pred             ccCCCCCCCEE
Q 047036          608 AVTDSPEAPLV  618 (634)
Q Consensus       608 ~~~~~~~~~ii  618 (634)
                      .++..-|++|-
T Consensus       403 IvSGGaD~~l~  413 (423)
T KOG0313|consen  403 IVSGGADNKLR  413 (423)
T ss_pred             EEeccCcceEE
Confidence            44443455553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.75  E-value=1e-16  Score=161.74  Aligned_cols=207  Identities=11%  Similarity=0.188  Sum_probs=154.3

Q ss_pred             CCcEEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+|+.|||| -|+.++..|+   .++||....-.     ....|..        -+|...++..+...-|+++-.     
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-----~qR~~~~--------~spVn~vvlhpnQteLis~dq-----  144 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-----CQRNYQH--------NSPVNTVVLHPNQTELISGDQ-----  144 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcc-----cchhccC--------CCCcceEEecCCcceEEeecC-----
Confidence            468999999 8999999986   56666654321     2222321        156665555555555666543     


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-----eEEecccC
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-----IVQNMVKG  405 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-----~Vq~l~gh  405 (634)
                       ++.|++||+..-.+-+++--..+ +.|..+.+.||        |..++.+-.-|++.+|++-....     ++..+..|
T Consensus       145 -sg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~d--------gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah  214 (311)
T KOG0315|consen  145 -SGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPD--------GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH  214 (311)
T ss_pred             -CCcEEEEEccCCccccccCCCCC-cceeeEEEcCC--------CcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence             37899999998888888765544 45677788998        67899999999999999875421     12223222


Q ss_pred             CCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD  483 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D  483 (634)
                      +.               -+..+-+|||+ +||++|.|.++++|+..++-+....|.||..+++..+||.||+||++ +.|
T Consensus       215 ~~---------------~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd  279 (311)
T KOG0315|consen  215 NG---------------HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD  279 (311)
T ss_pred             cc---------------eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence            21               23344578888 89999999999999998862244678899999999999999999999 999


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCC
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      +++||||+.    .|+.+..+.||.
T Consensus       280 ~~~rlW~~~----~~k~v~qy~gh~  300 (311)
T KOG0315|consen  280 HTARLWDLS----AGKEVRQYQGHH  300 (311)
T ss_pred             Cceeecccc----cCceeeecCCcc
Confidence            999999986    688888899887

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.75  E-value=6e-18  Score=179.42  Aligned_cols=241  Identities=14%  Similarity=0.189  Sum_probs=159.8

Q ss_pred             cEEEeee-CCCeEEEe-c--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVS-D--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~-G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      .+-.|-+ +++..+.+ |  ..|.+|+...++.+.   +..|+|      + .-|-..|-|+.++..+|+++.|      
T Consensus       177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~---~~tLaG------s-~g~it~~d~d~~~~~~iAas~d------  240 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL---ISTLAG------S-LGNITSIDFDSDNKHVIAASND------  240 (459)
T ss_pred             ccceeEEccCcchhhhcchhhhhhhhhcccchhhh---hhhhhc------c-CCCcceeeecCCCceEEeecCC------
Confidence            3444555 33233333 3  577788765544222   122332      1 1234456667777777877765      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +++++|++..++...+|.||++.|  +.+.|...        ...+++|+.|.+||+||++...|. +++-       . 
T Consensus       241 ~~~r~Wnvd~~r~~~TLsGHtdkV--t~ak~~~~--------~~~vVsgs~DRtiK~WDl~k~~C~-kt~l-------~-  301 (459)
T KOG0288|consen  241 KNLRLWNVDSLRLRHTLSGHTDKV--TAAKFKLS--------HSRVVSGSADRTIKLWDLQKAYCS-KTVL-------P-  301 (459)
T ss_pred             Cceeeeeccchhhhhhhcccccce--eeehhhcc--------ccceeeccccchhhhhhhhhhhee-cccc-------c-
Confidence            689999999999999999999987  44465543        234999999999999999976553 3321       0 


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                        +   +..+.+   +.+ .-.++||..|++||+||.++.. +....|+|+ .|++|++|++|.-|++ +.|.+|.++|+
T Consensus       302 --~---S~cnDI---~~~-~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  302 --G---SQCNDI---VCS-ISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             --c---ccccce---Eec-ceeeeecccccceEEEeccCCc-eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence              0   112222   222 2368999999999999987753 666778776 9999999999999999 99999999998


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS  571 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~  571 (634)
                      +.    .+-...|..                +.. .  -.-..++..|||.   +  +..+++|.++-|+||++.   .|
T Consensus       371 Rt----~eI~~~~sA----------------~g~-k--~asDwtrvvfSpd---~--~YvaAGS~dgsv~iW~v~---tg  419 (459)
T KOG0288|consen  371 RT----KEIRQTFSA----------------EGF-K--CASDWTRVVFSPD---G--SYVAAGSADGSVYIWSVF---TG  419 (459)
T ss_pred             cc----ccEEEEeec----------------ccc-c--cccccceeEECCC---C--ceeeeccCCCcEEEEEcc---Cc
Confidence            62    222222321                111 1  1234678888862   2  344455899999999986   45


Q ss_pred             ccc
Q 047036          572 AHE  574 (634)
Q Consensus       572 ~~~  574 (634)
                      +++
T Consensus       420 KlE  422 (459)
T KOG0288|consen  420 KLE  422 (459)
T ss_pred             eEE
Confidence            554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.75  E-value=6.2e-17  Score=167.12  Aligned_cols=253  Identities=16%  Similarity=0.193  Sum_probs=173.1

Q ss_pred             CCcEEEeee-CCCeEEEecC---eeeEEEcc------------CCc-eecceeEEEecCC-CCCcccccCcceeeEEeCC
Q 047036          255 GVQSLTLGA-LDNSFLVSDL---GLQVYRNY------------NRG-IHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGE  316 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G~---~igV~k~~------------~~g-l~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D  316 (634)
                      +.-+.|.+| +|+++++.|+   .|.++...            .++ -..+-+|.+|+.| ..++-..|.|...      
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~------  185 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET------  185 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh------
Confidence            445788888 8999999985   67777643            111 2233467777777 2345556666553      


Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                        .|++++.|      +||+++|...--..+-|+.-.+.-++..++|+|.        |+.|+.|.+..+++++|+.+-+
T Consensus       186 --ILiS~srD------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--------GefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  186 --ILISGSRD------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--------GEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             --eEEeccCC------CeEEEEecccHHHHHHHHHhhccceeeeEeecCC--------CceEEEecCCCceeEEecccee
Confidence              34455443      7999999865444444443332222345699998        7999999999999999999876


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEecccccccccccc-CCC-CCeEEEEECC
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSMRQAKTAFP-GLG-SPITHVDVTY  473 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~r~akt~L~-GH~-d~ItsVdfSp  473 (634)
                      |.+....        . ++    +.-.+++|-.++.|. -++||.||.|||||..+.| +.+++. +|+ ..|.+.-|+.
T Consensus       250 cfvsanP--------d-~q----ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  250 CFVSANP--------D-DQ----HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             EeeecCc--------c-cc----cccceeEEEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeEEEcc
Confidence            6432221        0 11    223468888899994 5899999999999988875 777765 676 4699999999


Q ss_pred             CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE
Q 047036          474 DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL  552 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I  552 (634)
                      ||+|||| ++|.+++||.+.    +|+++..|+|.-...                  ...-=+.|-||+ |+    +..|
T Consensus       316 n~kyiLsSG~DS~vkLWEi~----t~R~l~~YtGAg~tg------------------rq~~rtqAvFNh-tE----dyVl  368 (430)
T KOG0640|consen  316 NGKYILSSGKDSTVKLWEIS----TGRMLKEYTGAGTTG------------------RQKHRTQAVFNH-TE----DYVL  368 (430)
T ss_pred             CCeEEeecCCcceeeeeeec----CCceEEEEecCCccc------------------chhhhhhhhhcC-cc----ceEE
Confidence            9999999 999999999984    899999998763211                  111124577876 43    2333


Q ss_pred             EE-EcCCeEEEEeChhhhc
Q 047036          553 VA-TVGKFSVIWDFQQVKN  570 (634)
Q Consensus       553 vt-Stg~~viiWdl~~v~~  570 (634)
                      .- -.-.-++.||-..--+
T Consensus       369 ~pDEas~slcsWdaRtadr  387 (430)
T KOG0640|consen  369 FPDEASNSLCSWDARTADR  387 (430)
T ss_pred             ccccccCceeeccccchhh
Confidence            33 3345689999874433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.75  E-value=4.7e-17  Score=171.33  Aligned_cols=151  Identities=19%  Similarity=0.299  Sum_probs=120.0

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |+..+++.+ ...+++++-|      .||+.||+++|+++.++.+...   +..++.+|.        ..+|++||.|.-
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwD------HTIk~WDletg~~~~~~~~~ks---l~~i~~~~~--------~~Ll~~gssdr~  323 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWD------HTIKVWDLETGGLKSTLTTNKS---LNCISYSPL--------SKLLASGSSDRH  323 (423)
T ss_pred             ceeeEEEcC-CCceEeeccc------ceEEEEEeecccceeeeecCcc---eeEeecccc--------cceeeecCCCCc
Confidence            444444444 4456677765      7999999999999999999875   344577776        579999999999


Q ss_pred             EEEEEcCCCCc--eEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCC
Q 047036          387 LCQWDMRDRSG--IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       387 IklWD~R~~~~--~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH  462 (634)
                      |++||||++..  +.++|.||..+|               +++..+|-.  +|+|||.||++||||+++-+.....|.+|
T Consensus       324 irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  324 IRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             eeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence            99999998742  457777777654               556667655  69999999999999988754466788999


Q ss_pred             CCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          463 GSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      .+.|.+++++ +|..|++ +.|++|++...
T Consensus       389 ~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  389 NDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             CceEEEEecc-CCceEEeccCcceEEEecc
Confidence            9999999997 5678888 99999999863

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.7e-17  Score=185.27  Aligned_cols=216  Identities=11%  Similarity=0.159  Sum_probs=157.5

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCC----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETG----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      -+|++++.|      +++++|-++.+    -++....||++.|  ..++++--  +     ...++|+|.|+||++|+++
T Consensus       378 ~llat~sKD------~svilWr~~~~~~~~~~~a~~~gH~~sv--gava~~~~--~-----asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  378 DLLATGSKD------KSVILWRLNNNCSKSLCVAQANGHTNSV--GAVAGSKL--G-----ASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             cEEEEecCC------ceEEEEEecCCcchhhhhhhhccccccc--ceeeeccc--C-----ccEEEEecCCceEEEecCC
Confidence            356666654      79999976433    3567789999986  45577432  1     3689999999999999998


Q ss_pred             CCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036          394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS  472 (634)
                      ..... .      .++..-.+...-.+...+.||+.+|+. .||+||.|.+.+||++...+ ...+|.||.-.|++|.||
T Consensus       443 ~s~~~-~------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs  514 (775)
T KOG0319|consen  443 KSKET-A------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFS  514 (775)
T ss_pred             Ccccc-c------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEec
Confidence            52210 0      011000111222456678999999987 79999999999999998764 778999999999999999


Q ss_pred             CCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE
Q 047036          473 YDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH  551 (634)
Q Consensus       473 pDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~  551 (634)
                      |.-+.||+ |.|+||+||.+.    ++.|+.+|.||....                       .++.|-.     ++++.
T Consensus       515 ~~dq~laT~SgD~TvKIW~is----~fSClkT~eGH~~aV-----------------------lra~F~~-----~~~ql  562 (775)
T KOG0319|consen  515 KNDQLLATCSGDKTVKIWSIS----TFSCLKTFEGHTSAV-----------------------LRASFIR-----NGKQL  562 (775)
T ss_pred             cccceeEeccCCceEEEEEec----cceeeeeecCcccee-----------------------Eeeeeee-----CCcEE
Confidence            99999999 999999999985    799999999998522                       2344432     23677


Q ss_pred             EEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036          552 LVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH  604 (634)
Q Consensus       552 IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~  604 (634)
                      |.+++++.+.+||+++     .+|-           -.|-.|++.|=+...++
T Consensus       563 iS~~adGliKlWnikt-----~eC~-----------~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  563 ISAGADGLIKLWNIKT-----NECE-----------MTLDAHNDRVWALSVSP  599 (775)
T ss_pred             EeccCCCcEEEEeccc-----hhhh-----------hhhhhccceeEEEeecC
Confidence            7778999999999873     2232           25667777666555444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=3.4e-17  Score=183.62  Aligned_cols=201  Identities=12%  Similarity=0.196  Sum_probs=147.1

Q ss_pred             cEEEeeeCCCeEEEec-CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          257 QSLTLGALDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       257 ~~LavG~~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      +.+++.=.-+.+++.| +..+||.....+-..+ ..+.+.+   +-.+.++...+-+.+-+.++|++++.+      +.|
T Consensus        43 nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~-~~~~~k~---kqn~~~S~~DVkW~~~~~NlIAT~s~n------G~i  112 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGRSLLKLYAINPNDFSEK-CNHRFKT---KQNKFYSAADVKWGQLYSNLIATCSTN------GVI  112 (839)
T ss_pred             ceEeecCCcceeEEecccceeeEeeCcccCCcc-eeeeccc---ccceeeehhhcccccchhhhheeecCC------CcE
Confidence            3333332344677777 5778888766541111 1222221   123444555566667788899998876      689


Q ss_pred             EEEeCCC---CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          336 QQLDIET---GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       336 rlWDleT---GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      -+|||..   .+.+..|.-|+..|+  .++|++.      + ..+|+|||.|++||+||+|.... ++++.+.+..    
T Consensus       113 ~vWdlnk~~rnk~l~~f~EH~Rs~~--~ldfh~t------e-p~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSES----  178 (839)
T KOG0269|consen  113 SVWDLNKSIRNKLLTVFNEHERSAN--KLDFHST------E-PNILISGSQDGTVKCWDLRSKKS-KSTFRSNSES----  178 (839)
T ss_pred             EEEecCccccchhhhHhhhhcccee--eeeeccC------C-ccEEEecCCCceEEEEeeecccc-cccccccchh----
Confidence            9999987   677788999999874  5688875      2 47999999999999999998654 3555443322    


Q ss_pred             ccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                                 +.-|.|+|. + ++|++...|.++|||++..+++...|.+|.+||.+++++|++.|||+ +.|++|+||
T Consensus       179 -----------iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  179 -----------IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             -----------hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence                       344566654 3 79999999999999987655666789999999999999999999999 999999999


Q ss_pred             Ecc
Q 047036          490 CTL  492 (634)
Q Consensus       490 D~~  492 (634)
                      |..
T Consensus       248 d~t  250 (839)
T KOG0269|consen  248 DMT  250 (839)
T ss_pred             ecc
Confidence            964

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=7.9e-16  Score=153.68  Aligned_cols=249  Identities=14%  Similarity=0.136  Sum_probs=168.2

Q ss_pred             CCcEEEeee-CCCeEEEecC---eeeEEEc--cCCceecceeEEEecCCC-CCcccccCcceeeEEeCC--cceEEecCC
Q 047036          255 GVQSLTLGA-LDNSFLVSDL---GLQVYRN--YNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGE--TNMMLMSPL  325 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G~---~igV~k~--~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D--~~mllsss~  325 (634)
                      .+....+++ +++..++.|+   .|.|..-  ...+..++  -++|.-|. .++-.+|      |-..+  +.+|++++.
T Consensus        89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~--dle~nmhdgtirdl~f------ld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH--DLEFNMHDGTIRDLAF------LDDPESGGAILASAGA  160 (350)
T ss_pred             CccEEEEEecCccCeEEecCCCceEEEEecccccccccCc--ceeeeecCCceeeeEE------ecCCCcCceEEEecCC
Confidence            566788888 8999999884   5666543  33333333  33444331 1122222      22222  224444444


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036          326 KDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       326 d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                      .     |-.||+-|-.+|+-.+.+.||++-+ +.+.+|+          +-.+++||.|+|||+||+|...| |.++.. 
T Consensus       161 g-----dc~iy~tdc~~g~~~~a~sghtghi-lalyswn----------~~m~~sgsqdktirfwdlrv~~~-v~~l~~-  222 (350)
T KOG0641|consen  161 G-----DCKIYITDCGRGQGFHALSGHTGHI-LALYSWN----------GAMFASGSQDKTIRFWDLRVNSC-VNTLDN-  222 (350)
T ss_pred             C-----cceEEEeecCCCCcceeecCCcccE-EEEEEec----------CcEEEccCCCceEEEEeeeccce-eeeccC-
Confidence            3     3789999999999999999999976 3555665          46899999999999999998654 566631 


Q ss_pred             CCCcccccccccc-ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          406 DSPVLHWTQGHQF-SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       406 ~s~V~~~~~g~~y-~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                              ..|.- .....+.++|..|.| .||+|-.|....|||++++| ..+.+..|+..|++|.|||-..||++ |.
T Consensus       223 --------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~sy  293 (350)
T KOG0641|consen  223 --------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSY  293 (350)
T ss_pred             --------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecc
Confidence                    01110 123457889999999 68999999999999999986 78888899999999999999999999 99


Q ss_pred             CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEE
Q 047036          483 DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVI  562 (634)
Q Consensus       483 D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vii  562 (634)
                      |..|+|-|++     |.+..          .-|..+  -.||--.. ....+.|.-|          ..|.+|.|+.+.+
T Consensus       294 d~~ikltdlq-----gdla~----------el~~~v--v~ehkdk~-i~~rwh~~d~----------sfisssadkt~tl  345 (350)
T KOG0641|consen  294 DMKIKLTDLQ-----GDLAH----------ELPIMV--VAEHKDKA-IQCRWHPQDF----------SFISSSADKTATL  345 (350)
T ss_pred             cceEEEeecc-----cchhh----------cCceEE--EEeccCce-EEEEecCccc----------eeeeccCcceEEE
Confidence            9999999964     33211          111111  12221100 1233444444          3777899999999


Q ss_pred             EeCh
Q 047036          563 WDFQ  566 (634)
Q Consensus       563 Wdl~  566 (634)
                      |-+.
T Consensus       346 wa~~  349 (350)
T KOG0641|consen  346 WALN  349 (350)
T ss_pred             eccC
Confidence            9763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=5.1e-17  Score=164.31  Aligned_cols=183  Identities=13%  Similarity=0.174  Sum_probs=136.6

Q ss_pred             cEEEeeeCCCeEEEec-----CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGALDNSFLVSD-----LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~~D~sfvv~G-----~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ++++++..|+|.-+.+     .-|.+||-+...      +.         ++.+.++.       +..+++++-|     
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E------V~---------Svdwn~~~-------r~~~ltsSWD-----  126 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE------VY---------SVDWNTVR-------RRIFLTSSWD-----  126 (311)
T ss_pred             ceEEEEecCceEEEeccCCCCcchhHHHhhhhh------eE---------Eecccccc-------ceeEEeeccC-----
Confidence            5777777899887765     344555543321      11         22233332       2345566665     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       +||+|||...++-|++|+||...|  .-..|+|--       +++++++|.|+++++||+|..++. +.+..|+.    
T Consensus       127 -~TiKLW~~~r~~Sv~Tf~gh~~~I--y~a~~sp~~-------~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~----  191 (311)
T KOG0277|consen  127 -GTIKLWDPNRPNSVQTFNGHNSCI--YQAAFSPHI-------PNLFASASGDGTLRLWDVRSPGKF-MSIEAHNS----  191 (311)
T ss_pred             -CceEeecCCCCcceEeecCCccEE--EEEecCCCC-------CCeEEEccCCceEEEEEecCCCce-eEEEeccc----
Confidence             799999999999999999999865  556999962       479999999999999999987654 33555543    


Q ss_pred             cccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI  487 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr  487 (634)
                                 .+.|+-++.-  ..||+|+.|+.||.||++.+|.....|.||+-.|+.|.|||--.-|++  |.|-|+|
T Consensus       192 -----------Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  192 -----------EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             -----------eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence                       2345455542  268999999999999999888777788999999999999998876665  7899999


Q ss_pred             EEEcc
Q 047036          488 LICTL  492 (634)
Q Consensus       488 LWD~~  492 (634)
                      |||..
T Consensus       261 iw~~~  265 (311)
T KOG0277|consen  261 IWDPE  265 (311)
T ss_pred             ecccc
Confidence            99965

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.73  E-value=9e-17  Score=165.35  Aligned_cols=187  Identities=13%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM  392 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~  392 (634)
                      ++++..+++++.|      ..|.||++- ..+-...++||++.| +- +.|.+|        +..|+|++.|++|+.||+
T Consensus        56 ~P~gs~~aSgG~D------r~I~LWnv~gdceN~~~lkgHsgAV-M~-l~~~~d--------~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   56 HPDGSCFASGGSD------RAIVLWNVYGDCENFWVLKGHSGAV-ME-LHGMRD--------GSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             CCCCCeEeecCCc------ceEEEEeccccccceeeecccccee-Ee-eeeccC--------CCEEEEecCCceEEEEec
Confidence            3445567778876      689999964 335567789999987 34 489988        789999999999999999


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEE
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVD  470 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVd  470 (634)
                      +++++ +..+.+|.+.|               .+++.+.-|  .|.|||.||++||||.+.. .+..+++ -.-++++|.
T Consensus       120 ~tG~~-~rk~k~h~~~v---------------Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~  181 (338)
T KOG0265|consen  120 ETGKR-IRKHKGHTSFV---------------NSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVG  181 (338)
T ss_pred             cccee-eehhcccccee---------------eecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEE
Confidence            99865 56777776543               333433335  5889999999999998763 3555554 456899999


Q ss_pred             ECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCc
Q 047036          471 VTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQE  549 (634)
Q Consensus       471 fSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E  549 (634)
                      |..++..+.+ .-|+-|++||++    ++.++..+.||....                  ..+..+|.        |   
T Consensus       182 f~d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtI------------------t~lsls~~--------g---  228 (338)
T KOG0265|consen  182 FKDTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTI------------------TGLSLSRY--------G---  228 (338)
T ss_pred             ecccccceeeccccCceeeeccc----cCcceEEeecccCce------------------eeEEeccC--------C---
Confidence            9999999999 899999999987    688888899997521                  12333333        2   


Q ss_pred             eEEEE-EcCCeEEEEeChh
Q 047036          550 RHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       550 ~~Ivt-Stg~~viiWdl~~  567 (634)
                      ..+.+ +-|..+.+||+..
T Consensus       229 s~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  229 SFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             CccccccccceEEEEEecc
Confidence            23334 7899999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=1.1e-16  Score=181.07  Aligned_cols=171  Identities=22%  Similarity=0.253  Sum_probs=121.2

Q ss_pred             EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcce
Q 047036          345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF  424 (634)
Q Consensus       345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f  424 (634)
                      .+++|+||.+.| +.+ +||-         ++.|+|+|-|+|||||++....| +..+. |+          +|     +
T Consensus       361 P~~ef~GHt~DI-LDl-SWSK---------n~fLLSSSMDKTVRLWh~~~~~C-L~~F~-Hn----------df-----V  412 (712)
T KOG0283|consen  361 PFCEFKGHTADI-LDL-SWSK---------NNFLLSSSMDKTVRLWHPGRKEC-LKVFS-HN----------DF-----V  412 (712)
T ss_pred             chhhhhccchhh-eec-cccc---------CCeeEeccccccEEeecCCCcce-eeEEe-cC----------Ce-----e
Confidence            567899999976 243 7775         47999999999999999987665 45552 32          23     6


Q ss_pred             EEEEECCC--CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036          425 QCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       425 ssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      +||+|.|-  .|++|||.||.||||++...  ...--....+-|++|+|+|||++.+. |.+++++++++.    ..+..
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~----~lk~~  486 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE----GLKLV  486 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc----CCeEE
Confidence            89999883  49999999999999998753  23323345589999999999999998 999999999985    34444


Q ss_pred             eeecCCCCCCC-CCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeC--hhhh
Q 047036          502 TGFSGRMGNKI-PAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF--QQVK  569 (634)
Q Consensus       502 ~gF~gh~~~~~-p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl--~~v~  569 (634)
                      +.+.-+..+.+ .+-+  +|         ..+.|.|.         ...+.||||.|.-|.|.|+  .+++
T Consensus       487 ~~~~I~~~~~Kk~~~~--rI---------TG~Q~~p~---------~~~~vLVTSnDSrIRI~d~~~~~lv  537 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK--RI---------TGLQFFPG---------DPDEVLVTSNDSRIRIYDGRDKDLV  537 (712)
T ss_pred             EeeeEeeccCccccCc--ee---------eeeEecCC---------CCCeEEEecCCCceEEEeccchhhh
Confidence            44443332111 1111  11         12333333         2347999999999999999  5444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=7.2e-17  Score=178.43  Aligned_cols=224  Identities=15%  Similarity=0.253  Sum_probs=160.5

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCc------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGK------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      .+.|++++.|      ++|++|++.+-.      .+.+++.|.++|+ -+ ..+.+        ++.++|+|+|-||++|
T Consensus        37 ~ryLfTgGRD------g~i~~W~~~~d~~~~s~~~~asme~HsDWVN-Di-iL~~~--------~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   37 GRYLFTGGRD------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DI-ILCGN--------GKTLISASSDTTVKVW  100 (735)
T ss_pred             CceEEecCCC------ceEEEeccccccCCcccchhhhhhhhHhHHh-hH-HhhcC--------CCceEEecCCceEEEe
Confidence            3457788876      799999986532      5888999999885 32 44444        5689999999999999


Q ss_pred             EcCCCC-ceEEecccCCCCccccccccccccCcceEEEEE-CCCC-eEEEEECCCcEEEEeccccc--------c-cccc
Q 047036          391 DMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAS-TGDG-SIVVGSLDGKIRLYSKTSMR--------Q-AKTA  458 (634)
Q Consensus       391 D~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~-s~dG-~IASGS~DGtIRLWD~~t~r--------~-akt~  458 (634)
                      ++.... -+..+|..|.          +|     +.|+|. -++. .+||||.|+.|.|||+.++-        + ....
T Consensus       101 ~~~~~~~~c~stir~H~----------DY-----Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s  165 (735)
T KOG0308|consen  101 NAHKDNTFCMSTIRTHK----------DY-----VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS  165 (735)
T ss_pred             ecccCcchhHhhhhccc----------ch-----heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence            998663 2235565443          45     467777 4444 79999999999999998651        0 1124


Q ss_pred             cc-CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccc
Q 047036          459 FP-GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHG  536 (634)
Q Consensus       459 L~-GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~  536 (634)
                      +. |+.++|++++-++.|..||+ ++.+.|||||.+    +++.+..+.||..+.    |.|.+.+.             
T Consensus       166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNV----r~ll~~dD-------------  224 (735)
T KOG0308|consen  166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNV----RVLLVNDD-------------  224 (735)
T ss_pred             CCCCCccceeeeecCCcceEEEecCcccceEEeccc----cccceeeeeccccce----EEEEEcCC-------------
Confidence            55 99999999999999999999 999999999986    677788899998754    44432211             


Q ss_pred             ccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc--ccCCCCC
Q 047036          537 GHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF--AVTDSPE  614 (634)
Q Consensus       537 a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f--~~~~~~~  614 (634)
                               |  .+.|.+|+|+.|.+|||.+     ..|          + ..+..|.+.|=+.. +.+.|  .++.+.+
T Consensus       225 ---------G--t~~ls~sSDgtIrlWdLgq-----QrC----------l-~T~~vH~e~VWaL~-~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  225 ---------G--TRLLSASSDGTIRLWDLGQ-----QRC----------L-ATYIVHKEGVWALQ-SSPSFTHVYSGGRD  276 (735)
T ss_pred             ---------C--CeEeecCCCceEEeeeccc-----cce----------e-eeEEeccCceEEEe-eCCCcceEEecCCC
Confidence                     2  4677789999999999863     222          2 23445555554433 35677  3444457


Q ss_pred             CCEEEE
Q 047036          615 APLVVA  620 (634)
Q Consensus       615 ~~iivA  620 (634)
                      ++|+.+
T Consensus       277 ~~i~~T  282 (735)
T KOG0308|consen  277 GNIYRT  282 (735)
T ss_pred             CcEEec
Confidence            777765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.72  E-value=3.1e-15  Score=162.65  Aligned_cols=204  Identities=14%  Similarity=0.126  Sum_probs=151.7

Q ss_pred             EEEee-e-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          258 SLTLG-A-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       258 ~LavG-~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ..+|+ | |.+.|+++|+   +|+||......+..|+..--|.|          |.+-+-.+.|+.+|++.+.-+  .+=
T Consensus        61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG----------~I~Di~Wd~ds~RI~avGEGr--erf  128 (603)
T KOG0318|consen   61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG----------PIKDISWDFDSKRIAAVGEGR--ERF  128 (603)
T ss_pred             eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccc----------ccccceeCCCCcEEEEEecCc--cce
Confidence            34444 6 8899999995   99999976655333332222322          556666777788888776533  333


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.+++||  +|.-+-++.||...|+  .++|-|..       .=.++|||+|++|-+++--.- +--.++..|+      
T Consensus       129 g~~F~~D--SG~SvGei~GhSr~in--s~~~KpsR-------PfRi~T~sdDn~v~ffeGPPF-KFk~s~r~Hs------  190 (603)
T KOG0318|consen  129 GHVFLWD--SGNSVGEITGHSRRIN--SVDFKPSR-------PFRIATGSDDNTVAFFEGPPF-KFKSSFREHS------  190 (603)
T ss_pred             eEEEEec--CCCccceeeccceeEe--eeeccCCC-------ceEEEeccCCCeEEEeeCCCe-eeeecccccc------
Confidence            5688888  6889999999999764  56888863       248999999999999983211 1112222222      


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc---CCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP---GLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~---GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                               .-+.|+-++||| ++|++|.||+|.|||..++. ....|.   +|.+.|.+|++|||++.+|+ |.|.+++
T Consensus       191 ---------kFV~~VRysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  191 ---------KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK  260 (603)
T ss_pred             ---------cceeeEEECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence                     225789999999 89999999999999998874 555666   99999999999999999999 9999999


Q ss_pred             EEEcccccCCCCeeeeec
Q 047036          488 LICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~  505 (634)
                      |||+.    .++++++|.
T Consensus       261 IWdVs----~~slv~t~~  274 (603)
T KOG0318|consen  261 IWDVS----TNSLVSTWP  274 (603)
T ss_pred             EEEee----ccceEEEee
Confidence            99986    567777765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.72  E-value=2e-17  Score=171.30  Aligned_cols=161  Identities=17%  Similarity=0.283  Sum_probs=134.1

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE--------EeccCCCcceeEEEEecCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE--------WKFEKDGTDITMRDITNDTKSSQL  372 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~--------lkgH~~~V~I~vvsfsPd~K~~q~  372 (634)
                      ....|+|++        +.|++++-|      +-|-+||..+||+-+.        |..|.+.|. ++ +|+.|      
T Consensus       217 EcA~FSPDg--------qyLvsgSvD------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci-~FSRD------  274 (508)
T KOG0275|consen  217 ECARFSPDG--------QYLVSGSVD------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CI-SFSRD------  274 (508)
T ss_pred             hheeeCCCC--------ceEeecccc------ceeeeehhccchhhhhhhhhhhcceeecccceE-EE-eeccc------
Confidence            445566655        566677765      7999999999997653        567888773 54 99998      


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceEEecc-cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc
Q 047036          373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMV-KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT  450 (634)
Q Consensus       373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~-gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~  450 (634)
                        .+.+|+|+.|+.|++|-++++.|+ ..+. .|+.               .++|+.|+.|+ +|.++|.|.+||+--+.
T Consensus       275 --sEMlAsGsqDGkIKvWri~tG~Cl-RrFdrAHtk---------------Gvt~l~FSrD~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  275 --SEMLASGSQDGKIKVWRIETGQCL-RRFDRAHTK---------------GVTCLSFSRDNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             --HHHhhccCcCCcEEEEEEecchHH-HHhhhhhcc---------------CeeEEEEccCcchhhcccccceEEEeccc
Confidence              689999999999999999998774 4443 3433               36899999998 89999999999999999


Q ss_pred             ccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecC
Q 047036          451 SMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                      +++ +...|.||+..|+...|++||.+|++ |.|++|++|+..    +++|+.+|.-
T Consensus       337 SGK-~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~  388 (508)
T KOG0275|consen  337 SGK-CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK----TTECLSTFKP  388 (508)
T ss_pred             cch-hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc----chhhhhhccC
Confidence            885 77889999999999999999999999 999999999975    7889999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.1e-16  Score=161.99  Aligned_cols=196  Identities=17%  Similarity=0.112  Sum_probs=137.0

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      .+++++|..      + +.+++++.|      ++|+|||+. .-+.|+.|+-|+..|  ..+++++-.       +++++
T Consensus        64 fdV~Wse~~------e-~~~~~a~GD------GSLrl~d~~~~s~Pi~~~kEH~~EV--~Svdwn~~~-------r~~~l  121 (311)
T KOG0277|consen   64 FDVAWSENH------E-NQVIAASGD------GSLRLFDLTMPSKPIHKFKEHKREV--YSVDWNTVR-------RRIFL  121 (311)
T ss_pred             eEeeecCCC------c-ceEEEEecC------ceEEEeccCCCCcchhHHHhhhhhe--EEecccccc-------ceeEE
Confidence            456666654      2 345555544      799999953 357899999999986  344777642       57889


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                      ++|.|+|||+||+..++. |+++.||++.|               ..++|+|-  +.+|++|.||++||||++..- ...
T Consensus       122 tsSWD~TiKLW~~~r~~S-v~Tf~gh~~~I---------------y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~  184 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPNS-VQTFNGHNSCI---------------YQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFM  184 (311)
T ss_pred             eeccCCceEeecCCCCcc-eEeecCCccEE---------------EEEecCCCCCCeEEEccCCceEEEEEecCCC-cee
Confidence            999999999999986554 78898877654               45677774  389999999999999976421 123


Q ss_pred             cccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036          458 AFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH  535 (634)
Q Consensus       458 ~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft  535 (634)
                      .++.|...|.+.++|.-...++ + +.|+.||.||++.   -...+..+.||.-    +-|++              +|+
T Consensus       185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~----AVRkv--------------k~S  243 (311)
T KOG0277|consen  185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGL----AVRKV--------------KFS  243 (311)
T ss_pred             EEEeccceeEeecccccCCcEEEecCCCceEEEEehhh---ccccceeecCCce----EEEEE--------------ecC
Confidence            4899999999999997666665 4 7899999999873   2233444444431    22333              333


Q ss_pred             cccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          536 GGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       536 ~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      |-+=          ..|++ |-|=++.|||++
T Consensus       244 ph~~----------~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  244 PHHA----------SLLASASYDMTVRIWDPE  265 (311)
T ss_pred             cchh----------hHhhhccccceEEecccc
Confidence            3311          24444 558888999987

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.72  E-value=1.4e-16  Score=165.19  Aligned_cols=250  Identities=14%  Similarity=0.214  Sum_probs=182.2

Q ss_pred             CCCeEEEecCe---eeEEEccCCce----ecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEE
Q 047036          264 LDNSFLVSDLG---LQVYRNYNRGI----HNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQ  336 (634)
Q Consensus       264 ~D~sfvv~G~~---igV~k~~~~gl----~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIr  336 (634)
                      ||+.|++.|+.   |.||.-..+.+    .++ +.-+|--+       =.|+-.|-++.|+.||.+++-|      +.|+
T Consensus       223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-Aqd~fMMm-------d~aVlci~FSRDsEMlAsGsqD------GkIK  288 (508)
T KOG0275|consen  223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-AQDNFMMM-------DDAVLCISFSRDSEMLASGSQD------GKIK  288 (508)
T ss_pred             CCCceEeeccccceeeeehhccchhhhhhhhh-hhcceeec-------ccceEEEeecccHHHhhccCcC------CcEE
Confidence            89999999875   55665444321    111 11112111       1356677788899999988876      7999


Q ss_pred             EEeCCCCcEEEEEe-ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036          337 QLDIETGKIVTEWK-FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG  415 (634)
Q Consensus       337 lWDleTGK~V~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g  415 (634)
                      +|-++||+|++.|. .|+.+|  ++++|+.|        +.+++|+|.|.++|+--+.++++ ++.+.||++-|      
T Consensus       289 vWri~tG~ClRrFdrAHtkGv--t~l~FSrD--------~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyv------  351 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGV--TCLSFSRD--------NSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYV------  351 (508)
T ss_pred             EEEEecchHHHHhhhhhccCe--eEEEEccC--------cchhhcccccceEEEeccccchh-HHHhcCccccc------
Confidence            99999999999997 999997  57799998        68999999999999999998765 57888887654      


Q ss_pred             cccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECCCC--CEEEEEcCCcEEEEE
Q 047036          416 HQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDG--KWILGTTDTYLILIC  490 (634)
Q Consensus       416 ~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDG--k~LlSS~D~tIrLWD  490 (634)
                               .-+.|+++| +|+++|.||+||+|+..+.. +..+|.  |..-+|++|-.-|-.  .+|++-..++|.|.+
T Consensus       352 ---------n~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  352 ---------NEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             ---------cceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence                     344678888 89999999999999998864 777776  444688898887754  567777788999998


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhh
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVK  569 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~  569 (634)
                      +     .|+-+..|..--.                    ..-.|..|..++ .  |   .||-+ +.|+.++-+++.   
T Consensus       422 ~-----qGQvVrsfsSGkR--------------------EgGdFi~~~lSp-k--G---ewiYcigED~vlYCF~~~---  467 (508)
T KOG0275|consen  422 M-----QGQVVRSFSSGKR--------------------EGGDFINAILSP-K--G---EWIYCIGEDGVLYCFSVL---  467 (508)
T ss_pred             c-----cceEEeeeccCCc--------------------cCCceEEEEecC-C--C---cEEEEEccCcEEEEEEee---
Confidence            6     4887777763221                    123566676664 1  3   47654 778888888754   


Q ss_pred             cccccccccccCCcceeeEEEeccCCCeeeec
Q 047036          570 NSAHECYRNQQGLKSCYCYKIVLKDESIVESR  601 (634)
Q Consensus       570 ~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~  601 (634)
                      .|.++             -.++.++-.|+...
T Consensus       468 sG~LE-------------~tl~VhEkdvIGl~  486 (508)
T KOG0275|consen  468 SGKLE-------------RTLPVHEKDVIGLT  486 (508)
T ss_pred             cCcee-------------eeeecccccccccc
Confidence            57676             35777766666544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.71  E-value=3.2e-16  Score=167.78  Aligned_cols=194  Identities=18%  Similarity=0.196  Sum_probs=136.0

Q ss_pred             CcEEEEeCCCCcE-------EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC-CceEEeccc
Q 047036          333 PGVQQLDIETGKI-------VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR-SGIVQNMVK  404 (634)
Q Consensus       333 ~TIrlWDleTGK~-------V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~-~~~Vq~l~g  404 (634)
                      .+|.+||+.....       ...|.+|.+.|+  -|+|+|--       ..+++++++|+.+.|||+|+. .++.....+
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve--DV~~h~~h-------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVE--DVAWHPLH-------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCccee--hhhccccc-------hhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            7999999965432       345899999874  56898862       358899999999999999962 222233333


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--  480 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--  480 (634)
                      |               ...+.|++|+|-+  .||+||.|++|+|||++.+++...+|++|.+.|..|.|||.-..|++  
T Consensus       271 h---------------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS  335 (422)
T KOG0264|consen  271 H---------------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS  335 (422)
T ss_pred             c---------------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence            3               3457899999855  69999999999999999887777899999999999999999887776  


Q ss_pred             EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE-EEE-EcCC
Q 047036          481 TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH-LVA-TVGK  558 (634)
Q Consensus       481 S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~-Ivt-Stg~  558 (634)
                      +.|+.+.+||+.-   -|+...    ......-.|-+|-+..+|..        .-.-|+|+.    .+-+ |++ +.|+
T Consensus       336 g~D~rl~vWDls~---ig~eq~----~eda~dgppEllF~HgGH~~--------kV~DfsWnp----~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  336 GTDRRLNVWDLSR---IGEEQS----PEDAEDGPPELLFIHGGHTA--------KVSDFSWNP----NEPWTIASVAEDN  396 (422)
T ss_pred             ccCCcEEEEeccc---cccccC----hhhhccCCcceeEEecCccc--------ccccccCCC----CCCeEEEEecCCc
Confidence            6899999999862   233221    01111123445544444432        223455532    2344 444 4588


Q ss_pred             eEEEEeChhhh
Q 047036          559 FSVIWDFQQVK  569 (634)
Q Consensus       559 ~viiWdl~~v~  569 (634)
                      -+-||..-..+
T Consensus       397 ~LqIW~~s~~i  407 (422)
T KOG0264|consen  397 ILQIWQMAENI  407 (422)
T ss_pred             eEEEeeccccc
Confidence            88899986443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.71  E-value=9e-17  Score=170.38  Aligned_cols=188  Identities=12%  Similarity=0.110  Sum_probs=146.7

Q ss_pred             EEEeee-CCCeEEEecCe---eeEEEccCCceecceeEEEecCC--CCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSDLG---LQVYRNYNRGIHNKGVSVRFDGG--SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G~~---igV~k~~~~gl~~~~~~~~~~~~--~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      +.++-+ +++.++++|++   |.+|...-+.+      .-+..|  ..++..+|+|.-       + ..+++++|     
T Consensus       141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV------k~~~ahh~eaIRdlafSpnD-------s-kF~t~SdD-----  201 (464)
T KOG0284|consen  141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV------KIIQAHHAEAIRDLAFSPND-------S-KFLTCSDD-----  201 (464)
T ss_pred             ceeEEEccCCCEEEEcCCCceEEecccchhhh------HHhhHhhhhhhheeccCCCC-------c-eeEEecCC-----
Confidence            566666 78999999875   44555333221      112333  345788999853       2 23445543     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||...++.-+.+.||.-.|.  .++++|.        -.+|||||.|+.|++||+|++.| +.+|.+|...   
T Consensus       202 -g~ikiWdf~~~kee~vL~GHgwdVk--svdWHP~--------kgLiasgskDnlVKlWDprSg~c-l~tlh~HKnt---  266 (464)
T KOG0284|consen  202 -GTIKIWDFRMPKEERVLRGHGWDVK--SVDWHPT--------KGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNT---  266 (464)
T ss_pred             -CeEEEEeccCCchhheeccCCCCcc--eeccCCc--------cceeEEccCCceeEeecCCCcch-hhhhhhccce---
Confidence             7999999999999899999998874  5699997        35999999999999999999887 4677666544   


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLIL  488 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrL  488 (634)
                                  +.++.|+++| +|+++|.|..+|+||+++++ -..++.||...|+++.++|=-.-|++  +.|+.|..
T Consensus       267 ------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  267 ------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             ------------EEEEEEcCCCCeeEEccCCceEEEEehhHhH-HHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence                        5678889998 89999999999999998774 66789999999999999998777776  78999999


Q ss_pred             EEcc
Q 047036          489 ICTL  492 (634)
Q Consensus       489 WD~~  492 (634)
                      |.+-
T Consensus       334 ~~v~  337 (464)
T KOG0284|consen  334 WVVG  337 (464)
T ss_pred             Eecc
Confidence            9863

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.4e-16  Score=176.28  Aligned_cols=168  Identities=15%  Similarity=0.206  Sum_probs=128.1

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEE-ecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDI-TNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsf-sPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      -.+++.+++++.|      .||++|++..+  =|++++..|++.|.  ++++ .++        .+++|||+-|+.|++|
T Consensus        82 ~~~~~tlIS~SsD------tTVK~W~~~~~~~~c~stir~H~DYVk--cla~~ak~--------~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   82 CGNGKTLISASSD------TTVKVWNAHKDNTFCMSTIRTHKDYVK--CLAYIAKN--------NELVASGGLDRKIFLW  145 (735)
T ss_pred             hcCCCceEEecCC------ceEEEeecccCcchhHhhhhcccchhe--eeeecccC--------ceeEEecCCCccEEEE
Confidence            4455667777765      79999999988  68899999999873  3355 444        5899999999999999


Q ss_pred             EcCCCCc-eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036          391 DMRDRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       391 D~R~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      |+.++-. .+.+....  ++..-..|    .+-.+.++|.++.| .||+|+-.+.|||||.++.. ....|.||++-|..
T Consensus       146 Din~~~~~l~~s~n~~--t~~sl~sG----~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  146 DINTGTATLVASFNNV--TVNSLGSG----PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRV  218 (735)
T ss_pred             EccCcchhhhhhcccc--ccccCCCC----CccceeeeecCCcceEEEecCcccceEEecccccc-ceeeeeccccceEE
Confidence            9987622 12111100  00000001    23456889999999 58999999999999998853 56789999999999


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      |-+++||+.|+| |.|++|+|||+.    ..+|+.+|.-|.
T Consensus       219 ll~~dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~  255 (735)
T KOG0308|consen  219 LLVNDDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHK  255 (735)
T ss_pred             EEEcCCCCeEeecCCCceEEeeecc----ccceeeeEEecc
Confidence            999999999999 999999999985    567888877664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.68  E-value=6.9e-16  Score=171.70  Aligned_cols=173  Identities=14%  Similarity=0.164  Sum_probs=134.3

Q ss_pred             EEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE
Q 047036          320 MLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV  399 (634)
Q Consensus       320 llsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V  399 (634)
                      |++++-|      .|+++|-+  |+++..|.||...|  +.+.+-|+         +.++|||.|++||+|.-   +.++
T Consensus       115 ~iSgSWD------~TakvW~~--~~l~~~l~gH~asV--WAv~~l~e---------~~~vTgsaDKtIklWk~---~~~l  172 (745)
T KOG0301|consen  115 LISGSWD------STAKVWRI--GELVYSLQGHTASV--WAVASLPE---------NTYVTGSADKTIKLWKG---GTLL  172 (745)
T ss_pred             eEecccc------cceEEecc--hhhhcccCCcchhe--eeeeecCC---------CcEEeccCcceeeeccC---Cchh
Confidence            7778776      69999976  68999999999987  45566675         48999999999999986   3357


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL  479 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll  479 (634)
                      +++.||.+.|               ..+|+-+++.++|+|.||.||+|++.+  .....+.||+.-|++|+..+++..|+
T Consensus       173 ~tf~gHtD~V---------------RgL~vl~~~~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  173 KTFSGHTDCV---------------RGLAVLDDSHFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISMALSDGLIV  235 (745)
T ss_pred             hhhccchhhe---------------eeeEEecCCCeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEecCCCCeEE
Confidence            8898887754               677888899999999999999999865  36777889999999999999999999


Q ss_pred             E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCC
Q 047036          480 G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGK  558 (634)
Q Consensus       480 S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~  558 (634)
                      | +.|++||||+.      +.|.+..+-               |...       ...-.++.    .|   ..+|+++|+
T Consensus       236 s~gEDrtlriW~~------~e~~q~I~l---------------Ptts-------iWsa~~L~----Ng---DIvvg~SDG  280 (745)
T KOG0301|consen  236 STGEDRTLRIWKK------DECVQVITL---------------PTTS-------IWSAKVLL----NG---DIVVGGSDG  280 (745)
T ss_pred             EecCCceEEEeec------CceEEEEec---------------Cccc-------eEEEEEee----CC---CEEEeccCc
Confidence            9 99999999983      455443321               1111       11112221    13   477889999


Q ss_pred             eEEEEeCh
Q 047036          559 FSVIWDFQ  566 (634)
Q Consensus       559 ~viiWdl~  566 (634)
                      .|+||...
T Consensus       281 ~VrVfT~~  288 (745)
T KOG0301|consen  281 RVRVFTVD  288 (745)
T ss_pred             eEEEEEec
Confidence            99999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6.2e-15  Score=150.31  Aligned_cols=202  Identities=12%  Similarity=0.101  Sum_probs=151.6

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC---cEEEEE-eccCCCcceeEEEEecCCCCCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG---KIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSE  376 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG---K~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~  376 (634)
                      -+.++.|.+       +.+|.+++.|      ++||+|++..|   .++..+ .+|+..|+  .++++|.        |+
T Consensus        18 W~~awhp~~-------g~ilAscg~D------k~vriw~~~~~~s~~ck~vld~~hkrsVR--svAwsp~--------g~   74 (312)
T KOG0645|consen   18 WSVAWHPGK-------GVILASCGTD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVR--SVAWSPH--------GR   74 (312)
T ss_pred             EEEEeccCC-------ceEEEeecCC------ceEEEEecCCCCcEEEEEeccccchheee--eeeecCC--------Cc
Confidence            455666663       2345556654      79999999843   344344 47999875  5699998        78


Q ss_pred             EEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-
Q 047036          377 STFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-  453 (634)
Q Consensus       377 ~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-  453 (634)
                      +|++||.|.|+.||--..+. .++.+|.||...               +-|++++++| +||++|.|..|=+|...... 
T Consensus        75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE---------------VK~Vaws~sG~~LATCSRDKSVWiWe~deddE  139 (312)
T KOG0645|consen   75 YLASASFDATVVIWKKEDGEFECVATLEGHENE---------------VKCVAWSASGNYLATCSRDKSVWIWEIDEDDE  139 (312)
T ss_pred             EEEEeeccceEEEeecCCCceeEEeeeeccccc---------------eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence            99999999999999765442 457888776543               5799999999 89999999999999976321 


Q ss_pred             -cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          454 -QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       454 -~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                       .+...|.+|+.-|..|.+.|.-..|+| |.|+||++|.-.. +.+=.|.+++.||.+-                  ...
T Consensus       140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~T------------------VW~  200 (312)
T KOG0645|consen  140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENT------------------VWS  200 (312)
T ss_pred             EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccce------------------EEE
Confidence             356789999999999999999999999 9999999998543 3456778888888641                  134


Q ss_pred             cccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036          532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK  569 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~  569 (634)
                      +.|.+.        |  .++..++.|..|.||-+-..+
T Consensus       201 ~~F~~~--------G--~rl~s~sdD~tv~Iw~~~~~~  228 (312)
T KOG0645|consen  201 LAFDNI--------G--SRLVSCSDDGTVSIWRLYTDL  228 (312)
T ss_pred             EEecCC--------C--ceEEEecCCcceEeeeeccCc
Confidence            566655        3  355666788999999754333

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.67  E-value=1.4e-14  Score=152.35  Aligned_cols=249  Identities=14%  Similarity=0.182  Sum_probs=177.9

Q ss_pred             cCCCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          253 NGGVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       253 ~~~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      .....+.||+- |++.+++.|   ++--||+...+.     ....+.+|+ ++..+.|+-++.+        |+++..+ 
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~Fshdgtl--------LATGdms-  127 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTL--------LATGDMS-  127 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCceE--------EEecCCC-
Confidence            34556899998 788899976   677889976653     345667774 3456666666554        4444443 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                           +.|++|.+.+|....++...-+.+ .++ .++|-        +..++.|+.|+.|..|.+-.+ ...+.+.||++
T Consensus       128 -----G~v~v~~~stg~~~~~~~~e~~di-eWl-~WHp~--------a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~  191 (399)
T KOG0296|consen  128 -----GKVLVFKVSTGGEQWKLDQEVEDI-EWL-KWHPR--------AHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNS  191 (399)
T ss_pred             -----ccEEEEEcccCceEEEeecccCce-EEE-Eeccc--------ccEEEeecCCCcEEEEECCCc-ceeeEecCCCC
Confidence                 789999999999999986555544 254 99996        679999999999999999875 34578888776


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                      +               ++|-.|.|+| +|++|..||+||+||+.+++ ....+. .-+.+-++++++.+|..+++ +.++
T Consensus       192 ~---------------ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  192 P---------------CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             C---------------cccccccCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccCCc
Confidence            5               4677889999 89999999999999999874 444444 22456789999999999999 8899


Q ss_pred             cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      .+++-...    .|+-+..+.+..    |     .|+|.+.+.. ..+.|.|-  +  +   .-.-..+++.|+.|.|||
T Consensus       256 ~~~~~~~~----sgKVv~~~n~~~----~-----~l~~~~e~~~-esve~~~~--s--s---~lpL~A~G~vdG~i~iyD  314 (399)
T KOG0296|consen  256 VACGVNNG----SGKVVNCNNGTV----P-----ELKPSQEELD-ESVESIPS--S--S---KLPLAACGSVDGTIAIYD  314 (399)
T ss_pred             cEEEEccc----cceEEEecCCCC----c-----cccccchhhh-hhhhhccc--c--c---ccchhhcccccceEEEEe
Confidence            99988753    677776666522    1     2344443221 23555543  1  1   001233457899999999


Q ss_pred             Chhh
Q 047036          565 FQQV  568 (634)
Q Consensus       565 l~~v  568 (634)
                      +.+-
T Consensus       315 ~a~~  318 (399)
T KOG0296|consen  315 LAAS  318 (399)
T ss_pred             cccc
Confidence            9743

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=6.1e-17  Score=180.59  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=139.9

Q ss_pred             eEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC
Q 047036          267 SFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG  343 (634)
Q Consensus       267 sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG  343 (634)
                      .+++.|   .++++|....=     ..+..|.+|.       +|...+-++.+..+|.+++.+      ++|++|||+++
T Consensus        41 r~~~~Gg~~~k~~L~~i~kp-----~~i~S~~~he-------spIeSl~f~~~E~Llaagsas------gtiK~wDleeA  102 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIGKP-----NAITSLTGHE-------SPIESLTFDTSERLLAAGSAS------GTIKVWDLEEA  102 (825)
T ss_pred             eeeccCCCceeeccccccCC-----chhheeeccC-------CcceeeecCcchhhhcccccC------Cceeeeehhhh
Confidence            455555   57777764221     1344455652       344444445555566666654      79999999999


Q ss_pred             cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcc
Q 047036          344 KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTN  423 (634)
Q Consensus       344 K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~  423 (634)
                      +++++|.||...+  +.|+|+|-        +.+.++||.|.-+++||.|-.+| +..+.+|..               .
T Consensus       103 k~vrtLtgh~~~~--~sv~f~P~--------~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~---------------v  156 (825)
T KOG0267|consen  103 KIVRTLTGHLLNI--TSVDFHPY--------GEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTR---------------V  156 (825)
T ss_pred             hhhhhhhccccCc--ceeeeccc--------eEEeccccccccceehhhhccCc-eeeecCCcc---------------e
Confidence            9999999999864  56699997        67889999999999999997665 566655432               1


Q ss_pred             eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +.++.++|+| ++|+|+.|.+|+|||+..++ ....|++|...|.+|+|.|-.-.|++ +.|.+|++||++
T Consensus       157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            4678999999 89999999999999987763 77889999999999999999766666 999999999976

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6.4e-15  Score=150.22  Aligned_cols=155  Identities=10%  Similarity=0.125  Sum_probs=124.7

Q ss_pred             CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCC
Q 047036          298 SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPS  375 (634)
Q Consensus       298 ~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g  375 (634)
                      +++++++++|.+..        |.+++-|      .|+-+|--+.|  +++.+++||.+.|  -.++|+++        |
T Consensus        62 rsVRsvAwsp~g~~--------La~aSFD------~t~~Iw~k~~~efecv~~lEGHEnEV--K~Vaws~s--------G  117 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRY--------LASASFD------ATVVIWKKEDGEFECVATLEGHENEV--KCVAWSAS--------G  117 (312)
T ss_pred             heeeeeeecCCCcE--------EEEeecc------ceEEEeecCCCceeEEeeeeccccce--eEEEEcCC--------C
Confidence            34588999988754        4556665      69999987655  7899999999988  45699998        7


Q ss_pred             CEEEEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEECCCcEEEEecc-c
Q 047036          376 ESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKT-S  451 (634)
Q Consensus       376 ~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~-t  451 (634)
                      ++||++|.|++|-+|.+....  .++..|.+|..-|               --+.+.|. +.|||+|.|++||+|.-. .
T Consensus       118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV---------------K~V~WHPt~dlL~S~SYDnTIk~~~~~~d  182 (312)
T KOG0645|consen  118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV---------------KHVIWHPTEDLLFSCSYDNTIKVYRDEDD  182 (312)
T ss_pred             CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc---------------cEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence            899999999999999988543  2456677666533               33466775 489999999999999865 2


Q ss_pred             c-ccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          452 M-RQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       452 ~-r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      . =.+..+|.||...|.+++|.|.|..|++ +.|++++||-.
T Consensus       183 ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  183 DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            1 1356789999999999999999999999 99999999984

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=1.7e-15  Score=163.52  Aligned_cols=268  Identities=16%  Similarity=0.253  Sum_probs=173.5

Q ss_pred             cEEEeee-CCCeEEEec-CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          257 QSLTLGA-LDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      .+|+.+- +--.|+|.+ .++.+|.....+..  ..+-+|..  ..-+..|        ..|+.++++|..      .+.
T Consensus        30 ssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~srFk~--~v~s~~f--------R~DG~LlaaGD~------sG~   91 (487)
T KOG0310|consen   30 SSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFSRFKD--VVYSVDF--------RSDGRLLAAGDE------SGH   91 (487)
T ss_pred             eeEecCCCCCCceEEecccEEEEEecchhhhh--hhHHhhcc--ceeEEEe--------ecCCeEEEccCC------cCc
Confidence            3444443 233677765 58888875443310  01112211  0123333        455555555433      289


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      |+++|..+.-+++.+.+|+..|  .++.|+|..       +..+++|++|+.+++||+.+.- ++..+.+|.+       
T Consensus        92 V~vfD~k~r~iLR~~~ah~apv--~~~~f~~~d-------~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htD-------  154 (487)
T KOG0310|consen   92 VKVFDMKSRVILRQLYAHQAPV--HVTKFSPQD-------NTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTD-------  154 (487)
T ss_pred             EEEeccccHHHHHHHhhccCce--eEEEecccC-------CeEEEecCCCceEEEEEcCCcE-EEEEecCCcc-------
Confidence            9999988777899999999976  577999983       4689999999999999998753 3336666543       


Q ss_pred             ccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          415 GHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       415 g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                         |     +.|.+++|. + .++|||.||+|||||.++.......| .|+.||-+|.|=|.|..||+..-+.+++||+.
T Consensus       155 ---Y-----VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  155 ---Y-----VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             ---e-----eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence               4     467777765 4 58999999999999976532122344 59999999999999999999888999999986


Q ss_pred             cccCCCCee-eeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036          493 FSDKDGKTK-TGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS  571 (634)
Q Consensus       493 ~~~~~G~~~-~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~  571 (634)
                          .|..+ ..+..|..                     .+  |--+++.     ...++|.+|-|+.|.|+|+..    
T Consensus       226 ----~G~qll~~~~~H~K---------------------tV--TcL~l~s-----~~~rLlS~sLD~~VKVfd~t~----  269 (487)
T KOG0310|consen  226 ----TGGQLLTSMFNHNK---------------------TV--TCLRLAS-----DSTRLLSGSLDRHVKVFDTTN----  269 (487)
T ss_pred             ----CCceehhhhhcccc---------------------eE--EEEEeec-----CCceEeecccccceEEEEccc----
Confidence                33332 22222331                     11  1222221     113566668899999999652    


Q ss_pred             cccccccccCCcceeeEEE---eccCCCeeeeccccCccccCCCCCCCEEEEcCCceeee
Q 047036          572 AHECYRNQQGLKSCYCYKI---VLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSI  628 (634)
Q Consensus       572 ~~~~y~~~~~~~~~~~Y~i---~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~  628 (634)
                                      |++   -+|...|.+...-+        .+..|++.+.|-.-++
T Consensus       270 ----------------~Kvv~s~~~~~pvLsiavs~--------dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  270 ----------------YKVVHSWKYPGPVLSIAVSP--------DDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ----------------eEEEEeeecccceeeEEecC--------CCceEEEecccceeee
Confidence                            333   35777888777622        2357777776654444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.66  E-value=4.4e-15  Score=150.82  Aligned_cols=209  Identities=17%  Similarity=0.258  Sum_probs=148.7

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .++-.|++ -|++.+++|   .++.||....+.+.   ......+|. ++.-.++.|.       ...++++.+.|    
T Consensus        21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~-------~~d~~atas~d----   86 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPK-------HPDLFATASGD----   86 (313)
T ss_pred             hcceEEEEcccCceeeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCC-------CCcceEEecCC----
Confidence            45777888 689999987   58888886554211   112234442 2233334444       34556666665    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce--------EEec
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI--------VQNM  402 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~--------Vq~l  402 (634)
                        ++|++||+.+||++.+.......  |.+ .++|+        |++++.|..|..|-..|.|..+-.        +..+
T Consensus        87 --k~ir~wd~r~~k~~~~i~~~~en--i~i-~wsp~--------g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~  153 (313)
T KOG1407|consen   87 --KTIRIWDIRSGKCTARIETKGEN--INI-TWSPD--------GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEI  153 (313)
T ss_pred             --ceEEEEEeccCcEEEEeeccCcc--eEE-EEcCC--------CCEEEEecCcccEEEEEecccceeehhcccceeeee
Confidence              69999999999999988766653  455 89998        789999999999999999964210        1111


Q ss_pred             ccCCC-------------Ccccccccc-cc---ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036          403 VKGDS-------------PVLHWTQGH-QF---SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS  464 (634)
Q Consensus       403 ~gh~s-------------~V~~~~~g~-~y---~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d  464 (634)
                      .-|.+             -|+.|-..+ .+   ++..+.-|+.|+|+| ++|+||.|-.+-|||+..+ -+.+.|+-|.-
T Consensus       154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldw  232 (313)
T KOG1407|consen  154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDW  232 (313)
T ss_pred             eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccC
Confidence            10100             011111111 01   245567899999999 8999999999999999876 47788999999


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ||+.|+||.||++||| |.|.+|-|-++.
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecc
Confidence            9999999999999999 999999998886

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.66  E-value=1.3e-14  Score=152.64  Aligned_cols=240  Identities=13%  Similarity=0.197  Sum_probs=159.0

Q ss_pred             cEEEeee-CCCeEEEecC---eeeEEEccCCceecce-----eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          257 QSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKG-----VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~-----~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      .+.+++| +|+.|++.|.   ++.||+...++.+++-     -+..+.         +.|..        ..|++++.| 
T Consensus       108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~---------WHp~a--------~illAG~~D-  169 (399)
T KOG0296|consen  108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK---------WHPRA--------HILLAGSTD-  169 (399)
T ss_pred             ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE---------ecccc--------cEEEeecCC-
Confidence            4677777 7888888884   7888887766533221     111111         23433        234445443 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                           +.|..|.+..+...+.|.||...+  ++-.|.|+        |..+++|..|++|++||+.++.. +..+.+...
T Consensus       170 -----GsvWmw~ip~~~~~kv~~Gh~~~c--t~G~f~pd--------GKr~~tgy~dgti~~Wn~ktg~p-~~~~~~~e~  233 (399)
T KOG0296|consen  170 -----GSVWMWQIPSQALCKVMSGHNSPC--TCGEFIPD--------GKRILTGYDDGTIIVWNPKTGQP-LHKITQAEG  233 (399)
T ss_pred             -----CcEEEEECCCcceeeEecCCCCCc--ccccccCC--------CceEEEEecCceEEEEecCCCce-eEEeccccc
Confidence                 799999999989999999999976  45689999        56899999999999999998753 233321100


Q ss_pred             ---Cccccc---------------------cccccccCc------------ceEEEEECCCC----eEEEEECCCcEEEE
Q 047036          408 ---PVLHWT---------------------QGHQFSRGT------------NFQCFASTGDG----SIVVGSLDGKIRLY  447 (634)
Q Consensus       408 ---~V~~~~---------------------~g~~y~~~~------------~fssva~s~dG----~IASGS~DGtIRLW  447 (634)
                         +.+..+                     .|+-....+            ...|+.+.|-.    ..|+|+.||+|-||
T Consensus       234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy  313 (399)
T KOG0296|consen  234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY  313 (399)
T ss_pred             CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence               000000                     011000000            11233333322    46899999999999


Q ss_pred             eccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcc
Q 047036          448 SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSH  526 (634)
Q Consensus       448 D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~  526 (634)
                      |....+ .+..++ |.++|+.|-|-+ -.||++ +.++.|++||++    +|+++.+|+||....               
T Consensus       314 D~a~~~-~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR----tG~l~~~y~GH~~~I---------------  371 (399)
T KOG0296|consen  314 DLAAST-LRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDAR----TGQLKFTYTGHQMGI---------------  371 (399)
T ss_pred             ecccch-hheecc-CCCceEEEEEcC-cchheeeccCceEEeeecc----ccceEEEEecCchhe---------------
Confidence            987642 444454 999999999999 688888 889999999998    799999999998421               


Q ss_pred             ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          527 LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       527 ~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                         .....+|.           ++.||| |.|+...|+.+.
T Consensus       372 ---l~f~ls~~-----------~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  372 ---LDFALSPQ-----------KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ---eEEEEcCC-----------CcEEEEecCCCeEEEEecC
Confidence               12233333           245555 778888888653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.66  E-value=3.3e-15  Score=160.06  Aligned_cols=217  Identities=13%  Similarity=0.136  Sum_probs=147.3

Q ss_pred             CcEEEEeCCCC--cEEE--------EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-----
Q 047036          333 PGVQQLDIETG--KIVT--------EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-----  397 (634)
Q Consensus       333 ~TIrlWDleTG--K~V~--------~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-----  397 (634)
                      +.|++||..+-  +...        +|+||.+.=  .-++|++..+       -.|++|++|.+|++||+.....     
T Consensus       147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg--~glsWn~~~~-------g~Lls~~~d~~i~lwdi~~~~~~~~~~  217 (422)
T KOG0264|consen  147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG--YGLSWNRQQE-------GTLLSGSDDHTICLWDINAESKEDKVV  217 (422)
T ss_pred             CCEEEEEeccCCCcccccccCCCceEEEeecccc--cccccccccc-------eeEeeccCCCcEEEEeccccccCCccc
Confidence            57999997652  2222        799999821  2358888743       4899999999999999975422     


Q ss_pred             -eEEecccCCCCccccccccccccCcceEEEEECC--CCeEEEEECCCcEEEEecccc-ccccccccCCCCCeEEEEECC
Q 047036          398 -IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSKTSM-RQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       398 -~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~--dG~IASGS~DGtIRLWD~~t~-r~akt~L~GH~d~ItsVdfSp  473 (634)
                       +...+.+|.+.|               .-+++.+  ...+++++.|+.+.|||.++. .++....++|+.+|++|+|+|
T Consensus       218 ~p~~~~~~h~~~V---------------eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp  282 (422)
T KOG0264|consen  218 DPKTIFSGHEDVV---------------EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP  282 (422)
T ss_pred             cceEEeecCCcce---------------ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence             123344555443               2334444  347899999999999998842 234456779999999999999


Q ss_pred             CCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE
Q 047036          474 DGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH  551 (634)
Q Consensus       474 DGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~  551 (634)
                      =+.+|++  |+|+||.|||++   .-.+.+..|.+|-.+.                  ..+.|+|.          .+..
T Consensus       283 ~~~~ilAT~S~D~tV~LwDlR---nL~~~lh~~e~H~dev------------------~~V~WSPh----------~etv  331 (422)
T KOG0264|consen  283 FNEFILATGSADKTVALWDLR---NLNKPLHTFEGHEDEV------------------FQVEWSPH----------NETV  331 (422)
T ss_pred             CCCceEEeccCCCcEEEeech---hcccCceeccCCCcce------------------EEEEeCCC----------CCce
Confidence            8888776  789999999987   2455677788776532                  12445544          2456


Q ss_pred             EEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          552 LVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       552 Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                      +++ ++|+.+.|||+.+|-.-+..  ...+.+.--.-+.=.+|...|+|..+ +++.
T Consensus       332 LASSg~D~rl~vWDls~ig~eq~~--eda~dgppEllF~HgGH~~kV~DfsW-np~e  385 (422)
T KOG0264|consen  332 LASSGTDRRLNVWDLSRIGEEQSP--EDAEDGPPELLFIHGGHTAKVSDFSW-NPNE  385 (422)
T ss_pred             eEecccCCcEEEEeccccccccCh--hhhccCCcceeEEecCcccccccccC-CCCC
Confidence            666 67999999999987654431  11222333333666677778886666 4444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.3e-16  Score=177.90  Aligned_cols=184  Identities=13%  Similarity=0.217  Sum_probs=146.8

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      ++.++.++.+      ..+-||-+..--.+..|.+|...|.  .+.|+++        ..+|+.|+.+++||+||+... 
T Consensus        40 ~r~~~~Gg~~------~k~~L~~i~kp~~i~S~~~hespIe--Sl~f~~~--------E~LlaagsasgtiK~wDleeA-  102 (825)
T KOG0267|consen   40 SRSLVTGGED------EKVNLWAIGKPNAITSLTGHESPIE--SLTFDTS--------ERLLAAGSASGTIKVWDLEEA-  102 (825)
T ss_pred             ceeeccCCCc------eeeccccccCCchhheeeccCCcce--eeecCcc--------hhhhcccccCCceeeeehhhh-
Confidence            3445556554      4677898876666778999999864  5689887        469999999999999999865 


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG  475 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG  475 (634)
                      ++|++|.||...               +.++.|+|-| +.|+||.|+.+++||.+.+ .+...+.||..-|..+.|+|||
T Consensus       103 k~vrtLtgh~~~---------------~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~G  166 (825)
T KOG0267|consen  103 KIVRTLTGHLLN---------------ITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDG  166 (825)
T ss_pred             hhhhhhhccccC---------------cceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCC
Confidence            467888877543               4567789988 8899999999999998754 4778899999999999999999


Q ss_pred             CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036          476 KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA  554 (634)
Q Consensus       476 k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt  554 (634)
                      +|+++ +.|++++|||..    .|+.+..|.+|.+..                  ..+-|.|..|           .+.+
T Consensus       167 r~v~~g~ed~tvki~d~~----agk~~~ef~~~e~~v------------------~sle~hp~e~-----------Lla~  213 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLT----AGKLSKEFKSHEGKV------------------QSLEFHPLEV-----------LLAP  213 (825)
T ss_pred             ceeeccCCcceeeeeccc----ccccccccccccccc------------------cccccCchhh-----------hhcc
Confidence            99999 888999999986    699999999998632                  1234555522           3333


Q ss_pred             -EcCCeEEEEeCh
Q 047036          555 -TVGKFSVIWDFQ  566 (634)
Q Consensus       555 -Stg~~viiWdl~  566 (634)
                       |.|+.|..||++
T Consensus       214 Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  214 GSSDRTVRFWDLE  226 (825)
T ss_pred             CCCCceeeeeccc
Confidence             679999999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.64  E-value=2.3e-13  Score=148.28  Aligned_cols=289  Identities=16%  Similarity=0.157  Sum_probs=191.5

Q ss_pred             EEEeee-CCCeEEE-e---cCeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLV-S---DLGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       258 ~LavG~-~D~sfvv-~---G~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+++.+ +-|-|.+ .   +..|.+|...+-  .|+   ..+..| +.+..+.|+|++        ++.++.+.|     
T Consensus       150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF--KFk---~s~r~HskFV~~VRysPDG--------~~Fat~gsD-----  211 (603)
T KOG0318|consen  150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPF--KFK---SSFREHSKFVNCVRYSPDG--------SRFATAGSD-----  211 (603)
T ss_pred             EeeeeccCCCceEEEeccCCCeEEEeeCCCe--eee---ecccccccceeeEEECCCC--------CeEEEecCC-----
Confidence            677777 7776655 2   357777775442  121   112222 223566666665        455666665     


Q ss_pred             CCcEEEEeCCCCcEEEEEe---ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC-
Q 047036          332 APGVQQLDIETGKIVTEWK---FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS-  407 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lk---gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s-  407 (634)
                       ++|+++|-.||+.+.+|.   +|+++|  ..++++||        +.+++|+|.|+++|+||+.+.. +++++.--.. 
T Consensus       212 -gki~iyDGktge~vg~l~~~~aHkGsI--falsWsPD--------s~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v  279 (603)
T KOG0318|consen  212 -GKIYIYDGKTGEKVGELEDSDAHKGSI--FALSWSPD--------STQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTV  279 (603)
T ss_pred             -ccEEEEcCCCccEEEEecCCCCccccE--EEEEECCC--------CceEEEecCCceEEEEEeeccc-eEEEeecCCch
Confidence             799999999999999998   999986  56799999        6799999999999999998753 4555421000 


Q ss_pred             ------Ccccccccc-----------------------ccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036          408 ------PVLHWTQGH-----------------------QFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       408 ------~V~~~~~g~-----------------------~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                            .+  |...|                       -+-++..++|++.+++| +|.|||.||.|--||..++.+.+.
T Consensus       280 ~dqqvG~l--Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  280 EDQQVGCL--WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL  357 (603)
T ss_pred             hceEEEEE--EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence                  00  11111                       11145678999999999 899999999999999887643322


Q ss_pred             cccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCC-CCCCCceeEeecCCC-ccc--------
Q 047036          458 AFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG-NKIPAPRLLKLTPLD-SHL--------  527 (634)
Q Consensus       458 ~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~-~~~p~pr~L~L~Pe~-~~~--------  527 (634)
                      .=.+|+..|.+++.+-.|.++-+++|.+|++.++.     +   .+|.++.. .-..+|+.|...+.. .+.        
T Consensus       358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~-----~---~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv  429 (603)
T KOG0318|consen  358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK-----D---NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV  429 (603)
T ss_pred             ccccccceEEEEeecCCCcEEEEecCCeEEEEecc-----c---CcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence            22689999999999999888877999999999975     1   12444432 223567888777653 100        


Q ss_pred             --------cCCCccccccc--ccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCe
Q 047036          528 --------AGTDNKIHGGH--FSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESI  597 (634)
Q Consensus       528 --------~g~~i~Ft~a~--Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i  597 (634)
                              ...++.|.+..  +++     .+...+|++.|+-|.|+.|..   +.+.           --=++..+...|
T Consensus       430 ~l~~~~~~~~~~~~y~~s~vAv~~-----~~~~vaVGG~Dgkvhvysl~g---~~l~-----------ee~~~~~h~a~i  490 (603)
T KOG0318|consen  430 LLQDQTKVSSIPIGYESSAVAVSP-----DGSEVAVGGQDGKVHVYSLSG---DELK-----------EEAKLLEHRAAI  490 (603)
T ss_pred             EEecCCcceeeccccccceEEEcC-----CCCEEEEecccceEEEEEecC---Cccc-----------ceeeeecccCCc
Confidence                    01133444332  222     124577788888899998863   1111           112566677788


Q ss_pred             eeeccccC
Q 047036          598 VESRFMHD  605 (634)
Q Consensus       598 ~~~~f~~d  605 (634)
                      .+++|-+|
T Consensus       491 T~vaySpd  498 (603)
T KOG0318|consen  491 TDVAYSPD  498 (603)
T ss_pred             eEEEECCC
Confidence            88887333

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.63  E-value=4.6e-15  Score=149.98  Aligned_cols=191  Identities=17%  Similarity=0.204  Sum_probs=137.2

Q ss_pred             cEEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      -+.|++| -|-.+++.|.   -++||....-.    ....++.+|+  .|     .+.+++--+-+.||++.+|      
T Consensus       102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~----App~E~~ght--g~-----Ir~v~wc~eD~~iLSSadd------  164 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK----APPKEISGHT--GG-----IRTVLWCHEDKCILSSADD------  164 (334)
T ss_pred             eeeeEEecccchhhhccchHHHhhhhhccCCC----CCchhhcCCC--Cc-----ceeEEEeccCceEEeeccC------
Confidence            3788999 6888888774   45556532211    1222355542  11     1223333344567777554      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++||+||..||+.++++.....   +...-++++        | .+++-..-.+|++||+.+-+ +++            
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~---VtSlEvs~d--------G-~ilTia~gssV~Fwdaksf~-~lK------------  219 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSP---VTSLEVSQD--------G-RILTIAYGSSVKFWDAKSFG-LLK------------  219 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCC---CcceeeccC--------C-CEEEEecCceeEEecccccc-cee------------
Confidence            7999999999999999987654   345688887        3 46666778899999997643 222            


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc-cCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF-PGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L-~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                          .|.--.++.++...|+. .++.|+.|..++-||-.++. -+-.+ .||-+||.+|.|||||..-++ |.|++||||
T Consensus       220 ----s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  220 ----SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             ----eccCccccccccccCCCceEEecCcceEEEEEeccCCc-eeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence                23344567777788875 78999999999999999875 44444 899999999999999999999 999999999


Q ss_pred             Ecccc
Q 047036          490 CTLFS  494 (634)
Q Consensus       490 D~~~~  494 (634)
                      .+.++
T Consensus       295 Qt~~~  299 (334)
T KOG0278|consen  295 QTTPG  299 (334)
T ss_pred             EecCC
Confidence            98753

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.63  E-value=1.1e-14  Score=155.52  Aligned_cols=147  Identities=14%  Similarity=0.205  Sum_probs=122.3

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      .+...++.++.|      ..||+|.+..-........|...|+  -+...|.        |++++++|+|+++.+-|.++
T Consensus       271 ~~~~~v~~aSad------~~i~vws~~~~s~~~~~~~h~~~V~--~ls~h~t--------geYllsAs~d~~w~Fsd~~~  334 (506)
T KOG0289|consen  271 KDLDTVITASAD------EIIRVWSVPLSSEPTSSRPHEEPVT--GLSLHPT--------GEYLLSASNDGTWAFSDISS  334 (506)
T ss_pred             cchhheeecCCc------ceEEeeccccccCccccccccccce--eeeeccC--------CcEEEEecCCceEEEEEccC
Confidence            334456666665      5899999988888888999999874  4588887        78999999999999999999


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp  473 (634)
                      +.++.+...             . .+.+.++|++|.||| .+++|+.||.||+||+... .....||||+.||++|.||-
T Consensus       335 g~~lt~vs~-------------~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsE  399 (506)
T KOG0289|consen  335 GSQLTVVSD-------------E-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSE  399 (506)
T ss_pred             CcEEEEEee-------------c-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEecc
Confidence            876432211             1 134568999999999 5799999999999999986 47889999999999999999


Q ss_pred             CCCEEEE-EcCCcEEEEEcc
Q 047036          474 DGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD~~  492 (634)
                      +|-|||+ +.|+.|+|||++
T Consensus       400 NGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  400 NGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             CceEEEEEecCCeEEEEEeh
Confidence            9999999 677789999987

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.63  E-value=3.9e-15  Score=154.00  Aligned_cols=197  Identities=16%  Similarity=0.245  Sum_probs=145.7

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-----------------C-cEEEEEeccCCCcceeEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-----------------G-KIVTEWKFEKDGTDITMRD  362 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-----------------G-K~V~~lkgH~~~V~I~vvs  362 (634)
                      +..+|+|++        .++..++.|      -.|+++|+++                 + -+||+|-.|.+.|+  .+.
T Consensus       116 R~aafs~DG--------~lvATGsaD------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn--~l~  179 (430)
T KOG0640|consen  116 RAAAFSPDG--------SLVATGSAD------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN--DLD  179 (430)
T ss_pred             eeeeeCCCC--------cEEEccCCc------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc--cee
Confidence            445555555        455667765      5899999981                 1 48999999999875  569


Q ss_pred             EecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC
Q 047036          363 ITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD  441 (634)
Q Consensus       363 fsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D  441 (634)
                      |+|-        ..+|+||+.|++|+++|.....  ++.-            .+.+....++.|+.|.|.| +|++|..-
T Consensus       180 FHPr--------e~ILiS~srD~tvKlFDfsK~s--aKrA------------~K~~qd~~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  180 FHPR--------ETILISGSRDNTVKLFDFSKTS--AKRA------------FKVFQDTEPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             ecch--------hheEEeccCCCeEEEEecccHH--HHHH------------HHHhhccceeeeEeecCCCceEEEecCC
Confidence            9997        5799999999999999986321  1100            1122344578999999999 89999999


Q ss_pred             CcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeE
Q 047036          442 GKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLL  518 (634)
Q Consensus       442 GtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L  518 (634)
                      .++||||+.+.+.-....|  +|++.|++|..|+.|+.-++ |.|+.|+|||-.    .++|+.+|...-+.        
T Consensus       238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~g--------  305 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGG--------  305 (430)
T ss_pred             CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCC--------
Confidence            9999999988643223334  79999999999999999998 999999999964    68888888743321        


Q ss_pred             eecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          519 KLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       519 ~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                                   -.-+.+.|..   +|   ++|.+ +.|..|++|-+-
T Consensus       306 -------------sevcSa~Ftk---n~---kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  306 -------------SEVCSAVFTK---NG---KYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             -------------ceeeeEEEcc---CC---eEEeecCCcceeeeeeec
Confidence                         1123444432   13   67766 569999999875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.61  E-value=2e-14  Score=151.61  Aligned_cols=189  Identities=15%  Similarity=0.196  Sum_probs=127.6

Q ss_pred             CcEEEEeCCCCcEE---EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEecccCCC
Q 047036          333 PGVQQLDIETGKIV---TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V---~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~gh~s  407 (634)
                      +.|++|-..+|.-.   +.|.||+..|.  -+++||.-       ...+||||-|++|+|||+|.+.+  ++.+ ..|.+
T Consensus       234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVE--DLqWSptE-------~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s  303 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWKVDQRPFTGHTKSVE--DLQWSPTE-------DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS  303 (440)
T ss_pred             cceEeeeeccCceeecCccccccccchh--hhccCCcc-------CceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence            67999999998753   35889999985  45999973       36999999999999999998732  1221 33333


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--cccccccCCCCCeEEEEECCCCCE-EEE-Ec
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSPITHVDVTYDGKW-ILG-TT  482 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~ItsVdfSpDGk~-LlS-S~  482 (634)
                                     .+..+.++..- .||+|+.||+++|||++..+  +...+|+-|..||++|.++|...- |++ +.
T Consensus       304 ---------------DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  304 ---------------DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             ---------------ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence                           45566666654 79999999999999987643  344578899999999999986544 444 89


Q ss_pred             CCcEEEEEcccccCCCCee--eeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeE
Q 047036          483 DTYLILICTLFSDKDGKTK--TGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFS  560 (634)
Q Consensus       483 D~tIrLWD~~~~~~~G~~~--~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~v  560 (634)
                      |+.|.|||+.. +.+-+..  ....+ +.  .-.|.+|-+...+..+  +++.|++.  .  .  |   ..|.|+.++|-
T Consensus       369 D~QitiWDlsv-E~D~ee~~~~a~~~-L~--dlPpQLLFVHqGQke~--KevhWH~Q--i--P--G---~lvsTa~dGfn  433 (440)
T KOG0302|consen  369 DNQITIWDLSV-EADEEEIDQEAAEG-LQ--DLPPQLLFVHQGQKEV--KEVHWHRQ--I--P--G---LLVSTAIDGFN  433 (440)
T ss_pred             CCcEEEEEeec-cCChhhhccccccc-hh--cCCceeEEEecchhHh--hhheeccC--C--C--C---eEEEeccccee
Confidence            99999999753 1110000  00111 11  1235566655444322  56778876  1  1  3   34455777774


Q ss_pred             E
Q 047036          561 V  561 (634)
Q Consensus       561 i  561 (634)
                      |
T Consensus       434 V  434 (440)
T KOG0302|consen  434 V  434 (440)
T ss_pred             E
Confidence            4

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=1.5e-14  Score=154.84  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=118.7

Q ss_pred             eeEEeCCcc-eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          310 ALLMRGETN-MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       310 ~mL~~~D~~-mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      .|+++..-+ .|++++.|      +||++||+.+|++.+++..|.+.|  ..+.|.|..       ++.|++||.|++|.
T Consensus       248 ~Ls~n~~~~nVLaSgsaD------~TV~lWD~~~g~p~~s~~~~~k~V--q~l~wh~~~-------p~~LLsGs~D~~V~  312 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSAD------KTVKLWDVDTGKPKSSITHHGKKV--QTLEWHPYE-------PSVLLSGSYDGTVA  312 (463)
T ss_pred             HHHhccccceeEEecCCC------ceEEEEEcCCCCcceehhhcCCce--eEEEecCCC-------ceEEEeccccceEE
Confidence            345554444 44455544      799999999999999999999987  456999862       47999999999999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      +-|.|...+.                +..|+..-.+-.++..+-.  .++++..||++|-+|.+...++..++.+|.++|
T Consensus       313 l~D~R~~~~s----------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I  376 (463)
T KOG0270|consen  313 LKDCRDPSNS----------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI  376 (463)
T ss_pred             eeeccCcccc----------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence            9999953321                1122333345666776654  688899999999999887545778999999999


Q ss_pred             EEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          467 THVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       467 tsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                      .+|++++.-..+++  +.|++|+||++.
T Consensus       377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  377 SGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             ceEEecCCCCcceeeccccceEEEEeec
Confidence            99999999888776  889999999964

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.61  E-value=9.6e-14  Score=143.06  Aligned_cols=207  Identities=17%  Similarity=0.189  Sum_probs=145.4

Q ss_pred             CCCcEEEeeeCCCeEEEec---CeeeEEEccC------CceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecC
Q 047036          254 GGVQSLTLGALDNSFLVSD---LGLQVYRNYN------RGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSP  324 (634)
Q Consensus       254 ~~~~~LavG~~D~sfvv~G---~~igV~k~~~------~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss  324 (634)
                      |.+|.|-+---.+.|+++|   .-|-||....      .|+--+.  +++-+....+|..|.-..++++-=|.-|..+++
T Consensus        44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~--~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH--KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe--eeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            4556665555556666655   3555665411      1211111  111111111455566566777777888888888


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc
Q 047036          325 LKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK  404 (634)
Q Consensus       325 ~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g  404 (634)
                      -|      +||++||..|-+.+..|+....   |..-+++|-.    | ..-+||+|..|-.|++.|+.++.+ -.+|.|
T Consensus       122 FD------htlKVWDtnTlQ~a~~F~me~~---VYshamSp~a----~-sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsG  186 (397)
T KOG4283|consen  122 FD------HTLKVWDTNTLQEAVDFKMEGK---VYSHAMSPMA----M-SHCLIAAGTRDVQVRLCDIASGSF-SHTLSG  186 (397)
T ss_pred             cc------ceEEEeecccceeeEEeecCce---eehhhcChhh----h-cceEEEEecCCCcEEEEeccCCcc-eeeecc
Confidence            86      7999999999999999987754   3455777742    1 135899999999999999998765 578888


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc-------------c-cccccccCCCCCeEE
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM-------------R-QAKTAFPGLGSPITH  468 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~-------------r-~akt~L~GH~d~Its  468 (634)
                      |.+.|               -+|..+|..  .||+||.||.|||||++..             + .+..+-++|.+.|.+
T Consensus       187 Hr~~v---------------laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng  251 (397)
T KOG4283|consen  187 HRDGV---------------LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG  251 (397)
T ss_pred             ccCce---------------EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence            87654               466677766  4899999999999997531             0 011234479999999


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ++|+.||++|++ +.|..+++|+..
T Consensus       252 la~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  252 LAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             eeecccchhhhhccCccceEEeecc
Confidence            999999999999 999999999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.61  E-value=5.2e-14  Score=143.47  Aligned_cols=160  Identities=16%  Similarity=0.240  Sum_probs=123.2

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-----CCeE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-----DNRL  387 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-----D~tI  387 (634)
                      .+.+++.+++++.|      .+++|||++|||++.+|+....   +..+.|+++        |++++...+     -+.|
T Consensus        60 id~~s~~liTGSAD------~t~kLWDv~tGk~la~~k~~~~---Vk~~~F~~~--------gn~~l~~tD~~mg~~~~v  122 (327)
T KOG0643|consen   60 IDWDSKHLITGSAD------QTAKLWDVETGKQLATWKTNSP---VKRVDFSFG--------GNLILASTDKQMGYTCFV  122 (327)
T ss_pred             ecCCcceeeecccc------ceeEEEEcCCCcEEEEeecCCe---eEEEeeccC--------CcEEEEEehhhcCcceEE
Confidence            36778889999887      6999999999999999998753   456799997        555555443     4678


Q ss_pred             EEEEcCCCC------ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc
Q 047036          388 CQWDMRDRS------GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP  460 (634)
Q Consensus       388 klWD~R~~~------~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~  460 (634)
                      .+.|+|...      .++..+..               ....++.+...+-+ +|++|..||.|+.||++++.+.+....
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t---------------~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~  187 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPT---------------PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE  187 (327)
T ss_pred             EEEEccCChhhhcccCceEEecC---------------CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence            999998421      12222221               12334566677777 899999999999999998765666677


Q ss_pred             CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          461 GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       461 GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      -|+..|+.|.||||..+.++ |.|++-+|||..    +-..+.+|.--.
T Consensus       188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~----tl~v~Kty~te~  232 (327)
T KOG0643|consen  188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR----TLEVLKTYTTER  232 (327)
T ss_pred             hhccccccccccCCcceEEecccCccceeeecc----ceeeEEEeeecc
Confidence            89999999999999999999 999999999986    566777777443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.60  E-value=3.2e-14  Score=152.18  Aligned_cols=188  Identities=16%  Similarity=0.176  Sum_probs=145.6

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      .+.++.++.|      +++-+.|..+++++..|+||...|  +-+.|+|+        ...++++|.|..|++|-.-...
T Consensus       231 ~~~ilTGG~d------~~av~~d~~s~q~l~~~~Gh~kki--~~v~~~~~--------~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  231 SSKILTGGED------KTAVLFDKPSNQILATLKGHTKKI--TSVKFHKD--------LDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCcceecCCC------CceEEEecchhhhhhhccCcceEE--EEEEeccc--------hhheeecCCcceEEeecccccc
Confidence            5678888876      689999999999999999999875  56699998        5789999999999999987655


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECC
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTY  473 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSp  473 (634)
                      + .+.+..|..+|               +.+...|.| ||+++|.||++-..|..+++ ..+...  +-.-.+++..|+|
T Consensus       295 ~-~~~~~~h~~~V---------------~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  295 E-PTSSRPHEEPV---------------TGLSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             C-ccccccccccc---------------eeeeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEeeEcC
Confidence            4 24444555554               444557788 99999999999999998875 333222  1223489999999


Q ss_pred             CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE
Q 047036          474 DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL  552 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I  552 (634)
                      ||..+.+ +.|+-|++||+.    .+.....|-||.+..                  ..+.|.-.        |   .++
T Consensus       358 DgLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~v------------------k~i~FsEN--------G---Y~L  404 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPV------------------KAISFSEN--------G---YWL  404 (506)
T ss_pred             CceEEeccCCCceEEEEEcC----CccccccCCCCCCce------------------eEEEeccC--------c---eEE
Confidence            9999999 999999999986    455667788888632                  34666544        4   688


Q ss_pred             EEEc-CCeEEEEeChhhhc
Q 047036          553 VATV-GKFSVIWDFQQVKN  570 (634)
Q Consensus       553 vtSt-g~~viiWdl~~v~~  570 (634)
                      ++.+ |+-|++|||++.++
T Consensus       405 at~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  405 ATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             EEEecCCeEEEEEehhhcc
Confidence            7755 55599999998774

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=5.2e-15  Score=166.34  Aligned_cols=197  Identities=16%  Similarity=0.202  Sum_probs=146.0

Q ss_pred             cEEEeeeCCCeEEEecC-e------eeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          257 QSLTLGALDNSFLVSDL-G------LQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       257 ~~LavG~~D~sfvv~G~-~------igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      |.||++++.+.+++++- +      +.||.-+.+-      .         +...|       |.-+.++|++++.|   
T Consensus       101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs------~---------~~ldf-------h~tep~iliSGSQD---  155 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS------A---------NKLDF-------HSTEPNILISGSQD---  155 (839)
T ss_pred             hhheeecCCCcEEEEecCccccchhhhHhhhhccc------e---------eeeee-------ccCCccEEEecCCC---
Confidence            68999998888888762 2      2234333321      1         22223       33455678888765   


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                         ++|++||+..-+-+.++.+....|+  -|.|+|-.       +..++++.+.|.|.+||+|....+...+..|.++|
T Consensus       156 ---g~vK~~DlR~~~S~~t~~~nSESiR--DV~fsp~~-------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV  223 (839)
T KOG0269|consen  156 ---GTVKCWDLRSKKSKSTFRSNSESIR--DVKFSPGY-------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV  223 (839)
T ss_pred             ---ceEEEEeeecccccccccccchhhh--ceeeccCC-------CceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence               7999999999999999999998875  45999962       57899999999999999997655455677777664


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEEEc----C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILGTT----D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlSS~----D  483 (634)
                                     .|+-.+|++ +||+||.|++|||||..+.+ ++..+. .-..||..|.|-|+-++.|++|    |
T Consensus       224 ---------------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~-~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d  287 (839)
T KOG0269|consen  224 ---------------LCLNWHPNREWLATGGRDKMVKIWDMTDSR-AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD  287 (839)
T ss_pred             ---------------EEEeecCCCceeeecCCCccEEEEeccCCC-ccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence                           688889987 89999999999999998754 444332 2457999999999999988733    8


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCCC
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~~  509 (634)
                      ..|++||++   ...-...+|.-|..
T Consensus       288 tsV~VWDvr---RPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  288 TSVHVWDVR---RPYIPYATFLEHTD  310 (839)
T ss_pred             ceEEEEeec---cccccceeeeccCc
Confidence            999999987   23434455665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.59  E-value=3e-12  Score=127.79  Aligned_cols=139  Identities=16%  Similarity=0.191  Sum_probs=98.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|++||+.+|++++++..|...   ..++|+|+        ++.++ +++.|++|++||+++.. .+..+..       
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~--------g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~-------  113 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPN--------GKILYIANEDDNLVTVIDIETRK-VLAEIPV-------  113 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCCc---cEEEECCC--------CCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-------
Confidence            68999999999999988876553   34589998        45554 55678999999998754 3344321       


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCC-cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG-KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI  487 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DG-tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr  487 (634)
                               .....+++++|+| .|++++.++ .+++||..+++ ....+. .+..+.+++|+|||++|+.  ..++.|+
T Consensus       114 ---------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~  182 (300)
T TIGR03866       114 ---------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVS  182 (300)
T ss_pred             ---------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence                     1123567889999 678887765 57788987653 333332 2335688999999999865  3589999


Q ss_pred             EEEcccccCCCCeeeeec
Q 047036          488 LICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~  505 (634)
                      +||+.    +++.+..+.
T Consensus       183 i~d~~----~~~~~~~~~  196 (300)
T TIGR03866       183 VIDVA----TRKVIKKIT  196 (300)
T ss_pred             EEEcC----cceeeeeee
Confidence            99985    455544443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.58  E-value=6.2e-14  Score=162.35  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=117.7

Q ss_pred             cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC---CCCcccccccccc-c
Q 047036          344 KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG---DSPVLHWTQGHQF-S  419 (634)
Q Consensus       344 K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh---~s~V~~~~~g~~y-~  419 (634)
                      +.+.+..-|...|+  ++.|+||        |+++|+||+|+.|.+|.-....  .....|.   ..-|-.|..-..+ .
T Consensus        60 k~l~~m~~h~~sv~--CVR~S~d--------G~~lAsGSDD~~v~iW~~~~~~--~~~~fgs~g~~~~vE~wk~~~~l~~  127 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVN--CVRFSPD--------GSYLASGSDDRLVMIWERAEIG--SGTVFGSTGGAKNVESWKVVSILRG  127 (942)
T ss_pred             hhheeeccccCcee--EEEECCC--------CCeEeeccCcceEEEeeecccC--CcccccccccccccceeeEEEEEec
Confidence            45667788999874  6699999        7899999999999999976200  0111100   0001111111011 1


Q ss_pred             cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCC
Q 047036          420 RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKD  497 (634)
Q Consensus       420 ~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~  497 (634)
                      +...+.-++.+|++ +||++|.|++|-|||..+. .+.+.|.||...|.+|.|-|=|+|+|+ |.|++|++|.+.    +
T Consensus       128 H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~----d  202 (942)
T KOG0973|consen  128 HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS----D  202 (942)
T ss_pred             CCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc----c
Confidence            34456778889998 8999999999999999998 588899999999999999999999999 999999999964    3


Q ss_pred             CCeeeeecCCCCCCCCCc--eeEeecCCCc
Q 047036          498 GKTKTGFSGRMGNKIPAP--RLLKLTPLDS  525 (634)
Q Consensus       498 G~~~~gF~gh~~~~~p~p--r~L~L~Pe~~  525 (634)
                      =...+..++++.+..-.+  |||..+|...
T Consensus       203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  203 WGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             ceeeEeeccchhhCCCcceeeecccCCCcC
Confidence            334455666665443334  5555568654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=1.8e-14  Score=149.45  Aligned_cols=144  Identities=17%  Similarity=0.190  Sum_probs=117.8

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      +..++.++.|      .|..+||++||.+|..|.||....  +-++-.|.        ..++++.|.|-|.|+||.|..-
T Consensus       284 g~Q~vTaSWD------RTAnlwDVEtge~v~~LtGHd~EL--tHcstHpt--------QrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  284 GQQMVTASWD------RTANLWDVETGEVVNILTGHDSEL--THCSTHPT--------QRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             cceeeeeecc------ccceeeeeccCceeccccCcchhc--cccccCCc--------ceEEEEeccCceeEeccchhhc
Confidence            3456677776      699999999999999999999865  34466675        4689999999999999999654


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK  476 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk  476 (634)
                      ..|..++||.+.               ++++.|+-+..|++||.|.+||+||+++||.+..++. ...+|+.|++|.-+.
T Consensus       348 ~sV~VFQGHtdt---------------VTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~  411 (481)
T KOG0300|consen  348 QSVAVFQGHTDT---------------VTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP  411 (481)
T ss_pred             ceeeeecccccc---------------eeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence            445667776654               4677788888999999999999999999987777776 567999999999999


Q ss_pred             EEEEEc-CCcEEEEEcc
Q 047036          477 WILGTT-DTYLILICTL  492 (634)
Q Consensus       477 ~LlSS~-D~tIrLWD~~  492 (634)
                      .|+--. ...|||+|+.
T Consensus       412 iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  412 IIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             eEEeccCCceEEEEecC
Confidence            998854 5679999964

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.56  E-value=1.5e-13  Score=139.88  Aligned_cols=218  Identities=15%  Similarity=0.209  Sum_probs=150.0

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      +...+..+.++..|.+++.|      +++.+|.++.++.+.+  .+||.+.|.  -+++.|..       ..++++++.|
T Consensus        22 ~v~Sv~wn~~g~~lasgs~d------ktv~v~n~e~~r~~~~~~~~gh~~svd--ql~w~~~~-------~d~~atas~d   86 (313)
T KOG1407|consen   22 KVHSVAWNCDGTKLASGSFD------KTVSVWNLERDRFRKELVYRGHTDSVD--QLCWDPKH-------PDLFATASGD   86 (313)
T ss_pred             cceEEEEcccCceeeecccC------CceEEEEecchhhhhhhcccCCCcchh--hheeCCCC-------CcceEEecCC
Confidence            34445556777778888876      6999999999987776  478998875  44777751       5799999999


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc----------
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR----------  453 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r----------  453 (634)
                      ++|++||.|.++++ +.+..               ..-++.. +.+|+| ++|+|+.|..|-..|.++.+          
T Consensus        87 k~ir~wd~r~~k~~-~~i~~---------------~~eni~i-~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e  149 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCT-ARIET---------------KGENINI-TWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE  149 (313)
T ss_pred             ceEEEEEeccCcEE-EEeec---------------cCcceEE-EEcCCCCEEEEecCcccEEEEEecccceeehhcccce
Confidence            99999999998764 33310               1122332 345655 89999999999988876421          


Q ss_pred             ------------------------------cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036          454 ------------------------------QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT  502 (634)
Q Consensus       454 ------------------------------~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~  502 (634)
                                                    +..+.|.+|..--.+|.|+|+|+|+|+ +.|-.+-|||+.    .--|.+
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~----ELiC~R  225 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD----ELICER  225 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh----Hhhhhe
Confidence                                          133456788888899999999999999 999999999975    344555


Q ss_pred             eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccC
Q 047036          503 GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQG  581 (634)
Q Consensus       503 gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~  581 (634)
                      .|..+--   |               ...++|+-+        |   ++|++ |.|.||=|=+++   .|..        
T Consensus       226 ~isRldw---p---------------VRTlSFS~d--------g---~~lASaSEDh~IDIA~ve---tGd~--------  265 (313)
T KOG1407|consen  226 CISRLDW---P---------------VRTLSFSHD--------G---RMLASASEDHFIDIAEVE---TGDR--------  265 (313)
T ss_pred             eeccccC---c---------------eEEEEeccC--------c---ceeeccCccceEEeEecc---cCCe--------
Confidence            5553321   1               123555533        4   67776 678887666555   4543        


Q ss_pred             CcceeeEEEeccCCCeeeeccccCcc
Q 047036          582 LKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       582 ~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                           +.+|+- +.....+.. |+|.
T Consensus       266 -----~~eI~~-~~~t~tVAW-HPk~  284 (313)
T KOG1407|consen  266 -----VWEIPC-EGPTFTVAW-HPKR  284 (313)
T ss_pred             -----EEEeec-cCCceeEEe-cCCC
Confidence                 345554 334445566 7776

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=7.7e-13  Score=137.19  Aligned_cols=148  Identities=15%  Similarity=0.184  Sum_probs=115.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC--CCeEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD--DNRLC  388 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~--D~tIk  388 (634)
                      |-++.++..|++++.|      .+|+|+|..+|+++++...++-+|.  +++|...        ...++.+|.  |.+||
T Consensus        20 l~fs~~G~~litss~d------Dsl~LYd~~~g~~~~ti~skkyG~~--~~~Fth~--------~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen   20 LDFSDDGLLLITSSED------DSLRLYDSLSGKQVKTINSKKYGVD--LACFTHH--------SNTVIHSSTKEDDTIR   83 (311)
T ss_pred             EEecCCCCEEEEecCC------CeEEEEEcCCCceeeEeeccccccc--EEEEecC--------CceEEEccCCCCCceE
Confidence            3344555666776665      3899999999999999999988875  6688865        356777776  99999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It  467 (634)
                      .-++-+.+ .|+.+.||...               +.+++.+|.+ .+.|||.|++|||||++.. ++.-.|.-.+-|  
T Consensus        84 yLsl~dNk-ylRYF~GH~~~---------------V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~p--  144 (311)
T KOG1446|consen   84 YLSLHDNK-YLRYFPGHKKR---------------VNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGRP--  144 (311)
T ss_pred             EEEeecCc-eEEEcCCCCce---------------EEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCCc--
Confidence            99999865 57888888765               4677888877 8999999999999998864 355555544444  


Q ss_pred             EEEECCCCCEEEEEcCC-cEEEEEccc
Q 047036          468 HVDVTYDGKWILGTTDT-YLILICTLF  493 (634)
Q Consensus       468 sVdfSpDGk~LlSS~D~-tIrLWD~~~  493 (634)
                      -++|.|.|-++|+++.+ .|+|+|++.
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecc
Confidence            47899999999986655 999999884

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.56  E-value=2e-13  Score=151.34  Aligned_cols=204  Identities=12%  Similarity=0.185  Sum_probs=130.5

Q ss_pred             cEEEeeeCCCeEEEecCeeeEEEccCCcee----cceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGALDNSFLVSDLGLQVYRNYNRGIH----NKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~~D~sfvv~G~~igV~k~~~~gl~----~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ..|||+--|+-+.+-..+-.+|+.....+.    -.+++..+.         +.| +      + .+|++.+.|      
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~---------wap-g------e-~~lVsasGD------  121 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK---------WAP-G------E-SLLVSASGD------  121 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec---------cCC-C------c-eeEEEccCC------
Confidence            489999888888888777777774333211    011222221         233 2      1 124444443      


Q ss_pred             CcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc------eEEeccc
Q 047036          333 PGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG------IVQNMVK  404 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~------~Vq~l~g  404 (634)
                      .|+|.||+++++++..  +.||...|.  ..+|.|+.       ...+++|+.|+.|.|||+|-...      ..+...+
T Consensus       122 sT~r~Wdvk~s~l~G~~~~~GH~~Svk--S~cf~~~n-------~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRLNLGHTGSVK--SECFMPTN-------PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             ceeeeeeeccceeecceeecccccccc--hhhhccCC-------CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence            6999999999999988  999999985  55999973       25899999999999999995420      0011223


Q ss_pred             CCC---Ccccccc-cccc-ccCcc----eEEEEECCCCeEEEEEC-CCcEEEEecccccc-------ccccccCC---CC
Q 047036          405 GDS---PVLHWTQ-GHQF-SRGTN----FQCFASTGDGSIVVGSL-DGKIRLYSKTSMRQ-------AKTAFPGL---GS  464 (634)
Q Consensus       405 h~s---~V~~~~~-g~~y-~~~~~----fssva~s~dG~IASGS~-DGtIRLWD~~t~r~-------akt~L~GH---~d  464 (634)
                      |+.   ++-.-.+ -+.+ +....    ++.+.|-++.+||++|. |++||+||++....       ....++-|   .-
T Consensus       193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~  272 (720)
T KOG0321|consen  193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV  272 (720)
T ss_pred             ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence            332   1100000 0001 11122    34566666669999888 99999999875321       11123344   34


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .+++|.+-.-|.||.+ ++|++|.+|++.
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~  301 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMR  301 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence            5788888889999998 779999999976

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.55  E-value=1.9e-13  Score=141.21  Aligned_cols=151  Identities=18%  Similarity=0.310  Sum_probs=107.8

Q ss_pred             CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCE
Q 047036          300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSES  377 (634)
Q Consensus       300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~  377 (634)
                      +...+|+|.       ...|+.+++-|      ++||+|+++. |..+-+ ...|.+.| ++ ++|+.|        |..
T Consensus        30 IS~l~FSP~-------~~~~~~A~SWD------~tVR~wevq~~g~~~~ka~~~~~~Pv-L~-v~Wsdd--------gsk   86 (347)
T KOG0647|consen   30 ISALAFSPQ-------ADNLLAAGSWD------GTVRIWEVQNSGQLVPKAQQSHDGPV-LD-VCWSDD--------GSK   86 (347)
T ss_pred             hheeEeccc-------cCceEEecccC------CceEEEEEecCCcccchhhhccCCCe-EE-EEEccC--------Cce
Confidence            467789982       33566677776      7999999987 666543 45677776 35 499988        789


Q ss_pred             EEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccc
Q 047036          378 TFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQA  455 (634)
Q Consensus       378 laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~a  455 (634)
                      +|+|+-|+.+++||+.+++  ++.+..|..+|.              +|..+.+..  .||+||.|.|||.||.+.. +.
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~pvk--------------t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~p  149 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQ--VSQVAAHDAPVK--------------TCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NP  149 (347)
T ss_pred             EEeeccCCceEEEEccCCC--eeeeeeccccee--------------EEEEecCCCcceeEecccccceeecccCCC-Ce
Confidence            9999999999999999874  456667777652              334445444  5899999999999997653 23


Q ss_pred             cccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          456 KTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       456 kt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      ..++. +-+.++++++=.. -.++++.+..|.+++++
T Consensus       150 v~t~~-LPeRvYa~Dv~~p-m~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  150 VATLQ-LPERVYAADVLYP-MAVVATAERHIAVYNLE  184 (347)
T ss_pred             eeeee-ccceeeehhccCc-eeEEEecCCcEEEEEcC
Confidence            33332 4457777777655 12233778888888873

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.54  E-value=5.9e-14  Score=142.10  Aligned_cols=264  Identities=13%  Similarity=0.103  Sum_probs=175.5

Q ss_pred             ecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCC
Q 047036          294 FDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQL  372 (634)
Q Consensus       294 ~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~  372 (634)
                      .+|| +|+--.+|+|..     +++-.|++.+.|      +.=.|-.-+||.-|-+|.||++.|  +..++..+      
T Consensus        10 c~ghtrpvvdl~~s~it-----p~g~flisa~kd------~~pmlr~g~tgdwigtfeghkgav--w~~~l~~n------   70 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPIT-----PDGYFLISASKD------GKPMLRNGDTGDWIGTFEGHKGAV--WSATLNKN------   70 (334)
T ss_pred             EcCCCcceeEEeccCCC-----CCceEEEEeccC------CCchhccCCCCCcEEeeeccCcce--eeeecCch------
Confidence            3455 344455666553     455566666655      334455678999999999999987  34355544      


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc
Q 047036          373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t  451 (634)
                        ....|||+.|-|.++||.-++.. +.                .+.++.-+.+++|+.|. +|++|+.+..+|+||+..
T Consensus        71 --a~~aasaaadftakvw~a~tgde-lh----------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   71 --ATRAASAAADFTAKVWDAVTGDE-LH----------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             --hhhhhhhcccchhhhhhhhhhhh-hh----------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence              34788999999999999988653 22                33455567899999998 899999999999999876


Q ss_pred             cccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCC----CCCCCceeEeecCCCcc
Q 047036          452 MRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMG----NKIPAPRLLKLTPLDSH  526 (634)
Q Consensus       452 ~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~----~~~p~pr~L~L~Pe~~~  526 (634)
                      .......+.||...|..+-|-..-+.||| +.|++|||||.+    +|..++.+.-...    +..+.-|.|.+.-.-..
T Consensus       132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV  207 (334)
T KOG0278|consen  132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR----TGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSV  207 (334)
T ss_pred             CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec----cCcEEEEEecCCCCcceeeccCCCEEEEecCcee
Confidence            54344567899999999999999999999 889999999987    6777665542221    11122233333221110


Q ss_pred             c------------cCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccC
Q 047036          527 L------------AGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKD  594 (634)
Q Consensus       527 ~------------~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~  594 (634)
                      .            +..+.+-..|...|     +++.+++++.|.+++.+|+..-  ..+.            +| .+.+.
T Consensus       208 ~Fwdaksf~~lKs~k~P~nV~SASL~P-----~k~~fVaGged~~~~kfDy~Tg--eEi~------------~~-nkgh~  267 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKMPCNVESASLHP-----KKEFFVAGGEDFKVYKFDYNTG--EEIG------------SY-NKGHF  267 (334)
T ss_pred             EEeccccccceeeccCccccccccccC-----CCceEEecCcceEEEEEeccCC--ceee------------ec-ccCCC
Confidence            0            00112222332222     3466777788999999998731  1122            23 68899


Q ss_pred             CCeeeeccccCcccc-CCCCCCCEEE
Q 047036          595 ESIVESRFMHDKFAV-TDSPEAPLVV  619 (634)
Q Consensus       595 ~~i~~~~f~~d~f~~-~~~~~~~iiv  619 (634)
                      +.|-+++|-.|--.+ +.|.|..|++
T Consensus       268 gpVhcVrFSPdGE~yAsGSEDGTirl  293 (334)
T KOG0278|consen  268 GPVHCVRFSPDGELYASGSEDGTIRL  293 (334)
T ss_pred             CceEEEEECCCCceeeccCCCceEEE
Confidence            999999996665533 3345666664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.54  E-value=1.4e-13  Score=148.03  Aligned_cols=190  Identities=19%  Similarity=0.229  Sum_probs=137.1

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ..|+++. +|++|++.|   ..|.||...+..     .+..|.+|.       .+.-.+.+....+.|++++.|      
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-----hv~~~~ghr-------~~V~~L~fr~gt~~lys~s~D------  265 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-----HVKVFKGHR-------GAVSSLAFRKGTSELYSASAD------  265 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccc-----hhhcccccc-------cceeeeeeecCccceeeeecC------
Confidence            4788887 899999975   688888865533     233456662       223334556666677777765      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      .+|++|+++.-..|.++-||.+.| +.+-+.+.         ...+-.|..|+|+++|++-...++  .+.+|       
T Consensus       266 rsvkvw~~~~~s~vetlyGHqd~v-~~IdaL~r---------eR~vtVGgrDrT~rlwKi~eesql--ifrg~-------  326 (479)
T KOG0299|consen  266 RSVKVWSIDQLSYVETLYGHQDGV-LGIDALSR---------ERCVTVGGRDRTVRLWKIPEESQL--IFRGG-------  326 (479)
T ss_pred             CceEEEehhHhHHHHHHhCCccce-eeechhcc---------cceEEeccccceeEEEecccccee--eeeCC-------
Confidence            799999999888999999999987 34423332         345556669999999999543332  22222       


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc-CCC-----------CCeEEEEECCCCCEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP-GLG-----------SPITHVDVTYDGKWILG  480 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~-GH~-----------d~ItsVdfSpDGk~LlS  480 (634)
                              ...+.|+|+-.+-++++||.+|.|-||++...+ +..+.+ +|+           .+|++|++.|.-..+++
T Consensus       327 --------~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as  397 (479)
T KOG0299|consen  327 --------EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS  397 (479)
T ss_pred             --------CCCeeeEEEecccceeeccCCceEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence                    224689999888899999999999999987653 332211 222           38999999999999999


Q ss_pred             -EcCCcEEEEEcc
Q 047036          481 -TTDTYLILICTL  492 (634)
Q Consensus       481 -S~D~tIrLWD~~  492 (634)
                       |++++||||-+.
T Consensus       398 GS~~G~vrLW~i~  410 (479)
T KOG0299|consen  398 GSWSGCVRLWKIE  410 (479)
T ss_pred             cCCCCceEEEEec
Confidence             999999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=2.8e-13  Score=149.71  Aligned_cols=145  Identities=13%  Similarity=0.113  Sum_probs=118.0

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM  392 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~  392 (634)
                      .++++.|..+..+      ++|.+||+++.+.++++.+ |...|  .++++..          ..+.+|+.|+.|..+|+
T Consensus       226 s~~G~~LavG~~~------g~v~iwD~~~~k~~~~~~~~h~~rv--g~laW~~----------~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  226 SPDGSHLAVGTSD------GTVQIWDVKEQKKTRTLRGSHASRV--GSLAWNS----------SVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCCCCEEEEeecC------CeEEEEehhhccccccccCCcCcee--EEEeccC----------ceEEEecCCCcEEEEEE
Confidence            3444555666554      7999999999999999999 88764  5667773          58999999999999999


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                      |.....+.++.+|..               .++.+.+++++ ++|||+.|+.+.|||.... ..+.++..|...|..++|
T Consensus       288 R~~~~~~~~~~~H~q---------------eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQ---------------EVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             ecchhhhhhhhcccc---------------eeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeee
Confidence            987665555655544               35678889999 8999999999999998664 477888999999999999


Q ss_pred             CCCCCEEEE----EcCCcEEEEEcc
Q 047036          472 TYDGKWILG----TTDTYLILICTL  492 (634)
Q Consensus       472 SpDGk~LlS----S~D~tIrLWD~~  492 (634)
                      +|=-+-|||    +.|.+|++||+.
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcC
Confidence            997665554    569999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.53  E-value=1.5e-13  Score=147.85  Aligned_cols=187  Identities=15%  Similarity=0.175  Sum_probs=138.3

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEE----EE--------------EeccCCCcceeEEEEecCCCCCCCCCC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIV----TE--------------WKFEKDGTDITMRDITNDTKSSQLDPS  375 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V----~~--------------lkgH~~~V~I~vvsfsPd~K~~q~~~g  375 (634)
                      ..+.+.+++++.+      ++|-.|++.+|+.+    .+              +++|...+ ++ ++++||        +
T Consensus       151 s~d~~~~fsask~------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei-l~-~avS~D--------g  214 (479)
T KOG0299|consen  151 SPDDKRVFSASKD------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI-LT-LAVSSD--------G  214 (479)
T ss_pred             eccccceeecCCC------cceeeeehhcCcccccccccchhhhhccCCCCccccccccee-EE-EEEcCC--------C
Confidence            3444556666554      69999999999944    22              13777764 45 499999        6


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc
Q 047036          376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ  454 (634)
Q Consensus       376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~  454 (634)
                      .+||+|..|+-|.+||+++.. .++.+.+|.+.|               .++||-.+. .++|+|.|++|++|++..+ .
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V---------------~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s  277 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAV---------------SSLAFRKGTSELYSASADRSVKVWSIDQL-S  277 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-hhhcccccccce---------------eeeeeecCccceeeeecCCceEEEehhHh-H
Confidence            789999999999999999975 468888887654               677886655 7999999999999998775 3


Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK  533 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~  533 (634)
                      ...+|-||.+.|.+|+...-++.+-. +.|.|+|||++.     -.....|.+|-+                       +
T Consensus       278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~-----------------------s  329 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEG-----------------------S  329 (479)
T ss_pred             HHHHHhCCccceeeechhcccceEEeccccceeEEEecc-----ccceeeeeCCCC-----------------------C
Confidence            66788899999999999999997766 699999999973     122234555532                       2


Q ss_pred             cccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      +.-++|-      +++-++.+|.++.|.+|++-+
T Consensus       330 idcv~~I------n~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  330 IDCVAFI------NDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             eeeEEEe------cccceeeccCCceEEEeeecc
Confidence            2233332      123455557788899999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.53  E-value=4e-13  Score=152.26  Aligned_cols=231  Identities=15%  Similarity=0.166  Sum_probs=153.9

Q ss_pred             CcEEEeeeCCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          256 VQSLTLGALDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       256 ~~~LavG~~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      .|.++.-.++.+.-++   -+++|-|...+..  ++.    +..  ...+++.+        .=+|..+.|.+.      
T Consensus       412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~--~~~----~~~--~~~av~vs--------~CGNF~~IG~S~------  469 (910)
T KOG1539|consen  412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR--FKK----DDI--NATAVCVS--------FCGNFVFIGYSK------  469 (910)
T ss_pred             cceeEEecCcceEEEEeccCcccccEEecCcc--ccc----cCc--ceEEEEEe--------ccCceEEEeccC------
Confidence            4566666666655554   3566666654431  110    000  00233333        334556665554      


Q ss_pred             CcEEEEeCCCCcEEEEE---eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEW---KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~l---kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ++|-++++++|-...+|   ..|+..|    ..++-|+-      ++.++|++.+|-+++||...+. ++..+.      
T Consensus       470 G~Id~fNmQSGi~r~sf~~~~ah~~~V----~gla~D~~------n~~~vsa~~~Gilkfw~f~~k~-l~~~l~------  532 (910)
T KOG1539|consen  470 GTIDRFNMQSGIHRKSFGDSPAHKGEV----TGLAVDGT------NRLLVSAGADGILKFWDFKKKV-LKKSLR------  532 (910)
T ss_pred             CeEEEEEcccCeeecccccCccccCce----eEEEecCC------CceEEEccCcceEEEEecCCcc-eeeeec------
Confidence            68999999999999999   5899865    34555522      5789999999999999997543 233331      


Q ss_pred             cccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                                .+....++.... .+.+|.+..|-.|+++|..+. +..+.|.||++.|+.++|||||+||++ ++|++||
T Consensus       533 ----------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr  601 (910)
T KOG1539|consen  533 ----------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR  601 (910)
T ss_pred             ----------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence                      122233333333 347899999999999999985 478899999999999999999999999 9999999


Q ss_pred             EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcC-CeEEEEeC
Q 047036          488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVG-KFSVIWDF  565 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg-~~viiWdl  565 (634)
                      +||+.    +|.++-+|.  +. . |               -..++|+|.        |   .+++| ..| ..|++|.=
T Consensus       602 ~wDlp----t~~lID~~~--vd-~-~---------------~~sls~SPn--------g---D~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  602 TWDLP----TGTLIDGLL--VD-S-P---------------CTSLSFSPN--------G---DFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEecc----CcceeeeEe--cC-C-c---------------ceeeEECCC--------C---CEEEEEEecCceEEEEEc
Confidence            99985    677665443  11 1 1               023556555        4   35655 445 89999976


Q ss_pred             hhhhc
Q 047036          566 QQVKN  570 (634)
Q Consensus       566 ~~v~~  570 (634)
                      +...+
T Consensus       648 kslF~  652 (910)
T KOG1539|consen  648 KSLFK  652 (910)
T ss_pred             hhHhe
Confidence            54443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.52  E-value=3.3e-13  Score=139.18  Aligned_cols=206  Identities=17%  Similarity=0.202  Sum_probs=137.9

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCc------------E-E--EEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGK------------I-V--TEWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK------------~-V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      -+++++|+++.|      +.|-+||++.-.            | |  +-=.+|+-.|  ..+.+-|-      + ...+.
T Consensus        54 tegrymlSGgad------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i--ss~~WyP~------D-tGmFt  118 (397)
T KOG4283|consen   54 TEGRYMLSGGAD------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI--SSAIWYPI------D-TGMFT  118 (397)
T ss_pred             ccceEEeecCCC------ccEEEEEeccccchhhccceeheeeeccccCCccceeee--eeeEEeee------c-Cceee
Confidence            356778888886      689999997643            1 1  1124676664  34456563      1 24888


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      |+|.|.++|+||..+-+.. -.+.         -.++-|.+  ..+.+|.+ --.||+|-.|-.|||-|+.++ ....+|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a-~~F~---------me~~VYsh--amSp~a~s-HcLiA~gtr~~~VrLCDi~SG-s~sH~L  184 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEA-VDFK---------MEGKVYSH--AMSPMAMS-HCLIAAGTRDVQVRLCDIASG-SFSHTL  184 (397)
T ss_pred             cccccceEEEeecccceee-EEee---------cCceeehh--hcChhhhc-ceEEEEecCCCcEEEEeccCC-cceeee
Confidence            9999999999999875432 2221         02333322  11222221 116999999999999999998 478899


Q ss_pred             cCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          460 PGLGSPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      .||.+.|.+|.+||--.|||+  ++|+.|||||++   .--.|...+.-|.+.+.|   .|+-.|.|.      -.|...
T Consensus       185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiR---rasgcf~~lD~hn~k~~p---~~~~n~ah~------gkvngl  252 (397)
T KOG4283|consen  185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIR---RASGCFRVLDQHNTKRPP---ILKTNTAHY------GKVNGL  252 (397)
T ss_pred             ccccCceEEEEeccCceeEEEecCCCceEEEEEee---cccceeEEeecccCccCc---ccccccccc------ceeeee
Confidence            999999999999999999987  899999999997   333456667777653322   344334332      244455


Q ss_pred             cccccccCCCCceEEE-EEcCCeEEEEeChh
Q 047036          538 HFSWVTENGKQERHLV-ATVGKFSVIWDFQQ  567 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~Iv-tStg~~viiWdl~~  567 (634)
                      +|+.   +|   ..+. .++|.-+.+||..+
T Consensus       253 a~tS---d~---~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  253 AWTS---DA---RYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             eecc---cc---hhhhhccCccceEEeeccc
Confidence            5542   13   3444 47899999999874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=4.6e-13  Score=139.03  Aligned_cols=207  Identities=14%  Similarity=0.205  Sum_probs=147.4

Q ss_pred             CCcEEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ....|||   ++.|+++|   .+|.+|.+..+-     .+..+..| ..++...|.|.-.      .+-||+++.|    
T Consensus        45 sitavAV---s~~~~aSGssDetI~IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S------~shLlS~sdD----  106 (362)
T KOG0294|consen   45 SITALAV---SGPYVASGSSDETIHIYDMRKRK-----QLGILLSHAGSITALKFYPPLS------KSHLLSGSDD----  106 (362)
T ss_pred             ceeEEEe---cceeEeccCCCCcEEEEeccchh-----hhcceeccccceEEEEecCCcc------hhheeeecCC----
Confidence            3445555   57789987   589999975542     11122223 1224555554431      1246777665    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V  409 (634)
                        +.|.+||+..-+++.++++|+..|+  -++++|.        +.+.++-+.|+.+++||+-.++ ..+..|. |....
T Consensus       107 --G~i~iw~~~~W~~~~slK~H~~~Vt--~lsiHPS--------~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~  173 (362)
T KOG0294|consen  107 --GHIIIWRVGSWELLKSLKAHKGQVT--DLSIHPS--------GKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATL  173 (362)
T ss_pred             --CcEEEEEcCCeEEeeeecccccccc--eeEecCC--------CceEEEEcCCceeeeehhhcCccceeeccC-Cccee
Confidence              7999999999999999999999874  5699998        5577888999999999976553 2333443 22222


Q ss_pred             cccc-ccccccc--------------------Cc--ceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          410 LHWT-QGHQFSR--------------------GT--NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       410 ~~~~-~g~~y~~--------------------~~--~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      +.|. +|..|+.                    .+  ...|+.|-..+.|++|..|+.|++||.... .+.+.|.+|...|
T Consensus       174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RV  252 (362)
T KOG0294|consen  174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRV  252 (362)
T ss_pred             eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCC-ccceeeecchhhe
Confidence            3444 4443321                    11  256666666679999999999999998765 4778899999999


Q ss_pred             EEEEE--CCCCCEEEE-EcCCcEEEEEccc
Q 047036          467 THVDV--TYDGKWILG-TTDTYLILICTLF  493 (634)
Q Consensus       467 tsVdf--SpDGk~LlS-S~D~tIrLWD~~~  493 (634)
                      .+|.+  .|++.||++ |.|+.|++||+.+
T Consensus       253 K~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  253 KDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             eeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            99983  488999999 9999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=2.9e-13  Score=149.62  Aligned_cols=177  Identities=15%  Similarity=0.203  Sum_probs=134.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc-CCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK-GDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g-h~s~V~~  411 (634)
                      ..||+|+..+|++..-...+.+.|  +.|.++|+        |.+|+.|..+++|.|||....++ +.++.+ |..    
T Consensus       197 ~~vylW~~~s~~v~~l~~~~~~~v--tSv~ws~~--------G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~h~~----  261 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSFGEELV--TSVKWSPD--------GSHLAVGTSDGTVQIWDVKEQKK-TRTLRGSHAS----  261 (484)
T ss_pred             ceEEEEecCCCceEEeEecCCCce--EEEEECCC--------CCEEEEeecCCeEEEEehhhccc-cccccCCcCc----
Confidence            369999999999888888877765  67799998        78999999999999999876543 456654 333    


Q ss_pred             cccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                                 .+.|++.. ...+.+|+.||.|..+|++..+....++.+|...|-++.+++||+++|| +.|+.+.|||
T Consensus       262 -----------rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  262 -----------RVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD  329 (484)
T ss_pred             -----------eeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence                       35677776 4478999999999999988754333458899999999999999999999 9999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE---EcCCeEEEEeChh
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA---TVGKFSVIWDFQQ  567 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt---Stg~~viiWdl~~  567 (634)
                      ..    .-..+..|..|.+..                  +.+.|+|=.-      |    .|++   +.|+.|.+||...
T Consensus       330 ~~----~~~p~~~~~~H~aAV------------------KA~awcP~q~------~----lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  330 GL----SPEPKFTFTEHTAAV------------------KALAWCPWQS------G----LLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             CC----CccccEEEeccceee------------------eEeeeCCCcc------C----ceEEcCCCcccEEEEEEcCC
Confidence            73    344566677777533                  3355555421      1    3444   4578888888764


Q ss_pred             h
Q 047036          568 V  568 (634)
Q Consensus       568 v  568 (634)
                      .
T Consensus       378 g  378 (484)
T KOG0305|consen  378 G  378 (484)
T ss_pred             C
Confidence            3

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.51  E-value=3e-13  Score=146.68  Aligned_cols=148  Identities=20%  Similarity=0.332  Sum_probs=125.1

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      ++.++.|.++.+++-+|      +.|++||+..-.+|+.|+||.+++.  +..+++|        |..|-||+-|++||.
T Consensus       514 ALa~spDakvcFsccsd------GnI~vwDLhnq~~VrqfqGhtDGas--cIdis~d--------GtklWTGGlDntvRc  577 (705)
T KOG0639|consen  514 ALAISPDAKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTDGAS--CIDISKD--------GTKLWTGGLDNTVRC  577 (705)
T ss_pred             hhhcCCccceeeeeccC------CcEEEEEcccceeeecccCCCCCce--eEEecCC--------CceeecCCCccceee
Confidence            46678888888988886      6899999999999999999999984  5599998        789999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      ||+|.++++    .           .|+|.  .++.++...|.| .||+|-..+.+-|-....  ..+..|.-|...|.+
T Consensus       578 WDlregrql----q-----------qhdF~--SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlheScVLS  638 (705)
T KOG0639|consen  578 WDLREGRQL----Q-----------QHDFS--SQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLS  638 (705)
T ss_pred             hhhhhhhhh----h-----------hhhhh--hhheecccCCCccceeeecccCcEEEEecCC--ccceeecccccEEEE
Confidence            999987653    1           23443  245566667887 899999999998877654  367888889999999


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |.|++-|+|.+| +.|+.|-.|.+-
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCc
Confidence            999999999999 999999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=3.4e-13  Score=145.31  Aligned_cols=160  Identities=13%  Similarity=0.172  Sum_probs=120.3

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |.+++..+.++..|+++.-.      +.||+|-+.||+++..|.+|-..|  +++.|+.|        |..++|||.|+.
T Consensus        83 ~v~al~s~n~G~~l~ag~i~------g~lYlWelssG~LL~v~~aHYQ~I--TcL~fs~d--------gs~iiTgskDg~  146 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTIS------GNLYLWELSSGILLNVLSAHYQSI--TCLKFSDD--------GSHIITGSKDGA  146 (476)
T ss_pred             ceeeeecCCCceEEEeeccc------CcEEEEEeccccHHHHHHhhccce--eEEEEeCC--------CcEEEecCCCcc
Confidence            47788888888888888543      579999999999999999999975  67799988        789999999999


Q ss_pred             EEEEEcCCCCceEEecccCCC-CccccccccccccCcceEEEEECCC---CeEEEEECCCcEEEEeccccccccccccCC
Q 047036          387 LCQWDMRDRSGIVQNMVKGDS-PVLHWTQGHQFSRGTNFQCFASTGD---GSIVVGSLDGKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s-~V~~~~~g~~y~~~~~fssva~s~d---G~IASGS~DGtIRLWD~~t~r~akt~L~GH  462 (634)
                      |++|++-.   +|.....|+- |.-.|+.     +...++.+-...+   ++|+++|.|.+|||||+..+. ...++. .
T Consensus       147 V~vW~l~~---lv~a~~~~~~~p~~~f~~-----HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-f  216 (476)
T KOG0646|consen  147 VLVWLLTD---LVSADNDHSVKPLHIFSD-----HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-F  216 (476)
T ss_pred             EEEEEEEe---ecccccCCCccceeeecc-----CcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-c
Confidence            99999742   2222222211 2111221     2334555555544   489999999999999998874 443332 3


Q ss_pred             CCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          463 GSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      -.+|.+|++.|-++.+.. +.++.|-+.+..
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehh
Confidence            468999999999999999 899999888754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=6.5e-13  Score=141.55  Aligned_cols=149  Identities=18%  Similarity=0.176  Sum_probs=114.8

Q ss_pred             cccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC---cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          303 SNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG---KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       303 ~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG---K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      ..|+|.+.        .|.+++.|      .|.-+|++-.-   +++.++.||...| +. +.||||        .++++
T Consensus       230 l~FS~nGk--------yLAsaSkD------~Taiiw~v~~d~~~kl~~tlvgh~~~V-~y-i~wSPD--------dryLl  285 (519)
T KOG0293|consen  230 LQFSHNGK--------YLASASKD------STAIIWIVVYDVHFKLKKTLVGHSQPV-SY-IMWSPD--------DRYLL  285 (519)
T ss_pred             EEEcCCCe--------eEeeccCC------ceEEEEEEecCcceeeeeeeecccCce-EE-EEECCC--------CCeEE
Confidence            34666654        44455554      69999987543   4688999999998 35 499999        68999


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA  458 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~  458 (634)
                      +|+.|..+.+||+.++.+ +..+.          .+    ....++|+|.-||| ++++||-|++|..||..+ + .+..
T Consensus       286 aCg~~e~~~lwDv~tgd~-~~~y~----------~~----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n-~~~~  348 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDL-RHLYP----------SG----LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-N-ILGN  348 (519)
T ss_pred             ecCchHheeeccCCcchh-hhhcc----------cC----cCCCcceeEEccCCceeEecCCCCcEEEecCCc-c-hhhc
Confidence            999999999999998754 22221          11    12446788899999 799999999999999876 3 5555


Q ss_pred             ccCCCCC-eEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          459 FPGLGSP-ITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       459 L~GH~d~-ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      -.|-..| |..|++++||+|+++ +.|..|+|++..
T Consensus       349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e  384 (519)
T KOG0293|consen  349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE  384 (519)
T ss_pred             ccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence            5555544 899999999999999 999999999854

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.51  E-value=1.2e-12  Score=142.60  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=110.4

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc----EEEEEeccCCCcceeEEEEecCCCCCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSE  376 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~  376 (634)
                      +...|.|..       ....|+++.|      +|+|+||++.-|    ++.+--.....|++++++|+||        +.
T Consensus       272 t~g~whP~~-------k~~FlT~s~D------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd--------g~  330 (641)
T KOG0772|consen  272 TCGCWHPDN-------KEEFLTCSYD------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD--------GK  330 (641)
T ss_pred             eccccccCc-------ccceEEecCC------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC--------cc
Confidence            444566664       2346677665      799999997653    3332222334556678899999        56


Q ss_pred             EEEEEeCCCeEEEEEcCCCCc-eEEec-ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036          377 STFLGLDDNRLCQWDMRDRSG-IVQNM-VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       377 ~laSGS~D~tIklWD~R~~~~-~Vq~l-~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r  453 (634)
                      .||.|+.|++|.+||.+.... ++..+ ..|.             ....++|++||.+| +|+|=|.|+++||||++..+
T Consensus       331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~-------------~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL-------------PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             hhhhcccCCceeeeecCCcccccceEeeeccC-------------CCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            899999999999999875421 11111 1222             23468999999999 89999999999999998766


Q ss_pred             cccccccCCC--CCeEEEEECCCCCEEEE-Ec------CCcEEEEEcc
Q 047036          454 QAKTAFPGLG--SPITHVDVTYDGKWILG-TT------DTYLILICTL  492 (634)
Q Consensus       454 ~akt~L~GH~--d~ItsVdfSpDGk~LlS-S~------D~tIrLWD~~  492 (634)
                      +++....|+-  -+-+.++||||-+.|++ +.      -++|.++|..
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            5555444543  34578999999999998 32      2557777754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.51  E-value=2.7e-12  Score=128.12  Aligned_cols=139  Identities=13%  Similarity=0.202  Sum_probs=99.4

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~  396 (634)
                      +++++++.|      ++|++||+.+|+++..+.+|.. +  ..++|+|+        +..+ ++++.+++|++||++++.
T Consensus         2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~--~~l~~~~d--------g~~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-P--RGITLSKD--------GKLLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             cEEEEecCC------CEEEEEECCCCceEEEEECCCC-C--CceEECCC--------CCEEEEEECCCCeEEEEECCCCc
Confidence            345566554      6999999999999999998765 3  23589998        4555 677889999999998754


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEE-EEECCCcEEEEeccccccccccccCCCCCeEEEEECCC
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD  474 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD  474 (634)
                       .+..+..+.                ....++++++| .|+ +++.|+.|++||+.+.+ ....++ ++..+.+++|+||
T Consensus        65 -~~~~~~~~~----------------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~d  125 (300)
T TIGR03866        65 -VIGTLPSGP----------------DPELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPD  125 (300)
T ss_pred             -EEEeccCCC----------------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCC
Confidence             334443111                12456788888 564 45678999999988753 455555 3345789999999


Q ss_pred             CCEEEE-EcC-CcEEEEEcc
Q 047036          475 GKWILG-TTD-TYLILICTL  492 (634)
Q Consensus       475 Gk~LlS-S~D-~tIrLWD~~  492 (634)
                      |++|++ +.+ ..+++||..
T Consensus       126 g~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866       126 GKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             CCEEEEEecCCCeEEEEeCC
Confidence            999998 554 356677864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.50  E-value=1.8e-13  Score=145.82  Aligned_cols=140  Identities=19%  Similarity=0.248  Sum_probs=113.4

Q ss_pred             EEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE
Q 047036          320 MLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV  399 (634)
Q Consensus       320 llsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V  399 (634)
                      ++++..|      ++||.||+.++.++++..+|..   |+.++++++        +..|.+++.|+++.+.|+|+.+ ++
T Consensus       315 ~~SgH~D------kkvRfwD~Rs~~~~~sv~~gg~---vtSl~ls~~--------g~~lLsssRDdtl~viDlRt~e-I~  376 (459)
T KOG0288|consen  315 VISGHFD------KKVRFWDIRSADKTRSVPLGGR---VTSLDLSMD--------GLELLSSSRDDTLKVIDLRTKE-IR  376 (459)
T ss_pred             eeecccc------cceEEEeccCCceeeEeecCcc---eeeEeeccC--------CeEEeeecCCCceeeeeccccc-EE
Confidence            4455554      6899999999999999999873   467799988        6788888999999999999864 45


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC--CeEEEEECCCCC
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS--PITHVDVTYDGK  476 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d--~ItsVdfSpDGk  476 (634)
                      +++..           ..|....+++.++|||+| |+|+||.||.|+||++.+++ +...+..-+.  .|++++|+|-|+
T Consensus       377 ~~~sA-----------~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  377 QTFSA-----------EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             EEeec-----------cccccccccceeEECCCCceeeeccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCc
Confidence            66531           123344457889999999 99999999999999999875 5555554333  599999999999


Q ss_pred             EEEE-EcCCcEEEE
Q 047036          477 WILG-TTDTYLILI  489 (634)
Q Consensus       477 ~LlS-S~D~tIrLW  489 (634)
                      +||+ +.+.++.||
T Consensus       445 ~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  445 GLLSADKQKAVTLW  458 (459)
T ss_pred             hhhcccCCcceEec
Confidence            9999 899999999

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.8e-12  Score=134.89  Aligned_cols=238  Identities=15%  Similarity=0.149  Sum_probs=150.3

Q ss_pred             cEEEeee-CCC-eEEE---ecCeeeEEEcc--CCc-eecceeEEEecCC-CC-CcccccCcceeeEEeCCcceEEecCCC
Q 047036          257 QSLTLGA-LDN-SFLV---SDLGLQVYRNY--NRG-IHNKGVSVRFDGG-SS-KIGSNSTPKKALLMRGETNMMLMSPLK  326 (634)
Q Consensus       257 ~~LavG~-~D~-sfvv---~G~~igV~k~~--~~g-l~~~~~~~~~~~~-~~-~~g~~fsP~~~mL~~~D~~mllsss~d  326 (634)
                      ..-+|.| +|. +|||   +|+++.||+..  .+| ..++.  +....| .+ ++.+   |.--+=..+.+..|++++.|
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~--v~~D~~~f~~kh~v---~~i~iGiA~~~k~imsas~d  208 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHF--VHIDNLEFERKHQV---DIINIGIAGNAKYIMSASLD  208 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccc--ccccccccchhccc---ceEEEeecCCceEEEEecCC
Confidence            3456666 655 6666   58999999972  222 11110  011100 00 0111   11111123455667777765


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-----c--eE
Q 047036          327 DGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-----G--IV  399 (634)
Q Consensus       327 ~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-----~--~V  399 (634)
                            .+|-|||+. |+++.......-.-  ...++||+        |+.|++++.---|++|.+--.+     .  .|
T Consensus       209 ------t~i~lw~lk-Gq~L~~idtnq~~n--~~aavSP~--------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv  271 (420)
T KOG2096|consen  209 ------TKICLWDLK-GQLLQSIDTNQSSN--YDAAVSPD--------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV  271 (420)
T ss_pred             ------CcEEEEecC-Cceeeeeccccccc--cceeeCCC--------CcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence                  689999999 99999987655432  45589999        6789999999999999975321     1  12


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---c-ccc------cccCCCCCeEE
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---Q-AKT------AFPGLGSPITH  468 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---~-akt------~L~GH~d~Its  468 (634)
                      -.|.||.+.               +.++||+++. ++++.|.||++||||..-..   + .+.      .|..-+..-..
T Consensus       272 f~LkGH~sa---------------V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R  336 (420)
T KOG2096|consen  272 FSLKGHQSA---------------VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR  336 (420)
T ss_pred             heeccchhh---------------eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceE
Confidence            345566554               4678999998 89999999999999975310   0 111      11122333348


Q ss_pred             EEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc-CCCcccccccccccccCCC
Q 047036          469 VDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA-GTDNKIHGGHFSWVTENGK  547 (634)
Q Consensus       469 VdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~-g~~i~Ft~a~Fs~~t~~g~  547 (634)
                      |.+||.|+.||.+.-.+|.++..+    +|+-.-.|+.                  +|.. ...++|.+.        | 
T Consensus       337 L~lsP~g~~lA~s~gs~l~~~~se----~g~~~~~~e~------------------~h~~~Is~is~~~~--------g-  385 (420)
T KOG2096|consen  337 LELSPSGDSLAVSFGSDLKVFASE----DGKDYPELED------------------IHSTTISSISYSSD--------G-  385 (420)
T ss_pred             EEeCCCCcEEEeecCCceEEEEcc----cCccchhHHH------------------hhcCceeeEEecCC--------C-
Confidence            999999999999999999999976    4543333331                  1110 123555544        4 


Q ss_pred             CceEEEEEcCCeEEEEe
Q 047036          548 QERHLVATVGKFSVIWD  564 (634)
Q Consensus       548 ~E~~IvtStg~~viiWd  564 (634)
                        +.|+|+.|+++.+.-
T Consensus       386 --~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  386 --KYIATCGDRYVRVIR  400 (420)
T ss_pred             --cEEeeecceeeeeec
Confidence              799999999998753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.50  E-value=7.2e-13  Score=142.60  Aligned_cols=199  Identities=13%  Similarity=0.132  Sum_probs=135.9

Q ss_pred             CcEEEeee-C--CCeEEEecC---eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036          256 VQSLTLGA-L--DNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       256 ~~~LavG~-~--D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      ...-++++ +  .++.|+.|+   .||+|.....+ .....+.-|..| .++.+..|+|..       .++|++++.|  
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~~hs~~Vs~l~F~P~n-------~s~i~ssSyD--  256 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFTPHSGPVSGLKFSPAN-------TSQIYSSSYD--  256 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCC-CccCceEEeccCCccccceEecCCC-------hhheeeeccC--
Confidence            45667777 3  557888775   68888863211 111123334444 345666677654       4678888886  


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          329 KPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       329 ~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                          +|||+.|++++..-.-+.-.++..-++..+|+.+        ...++.|..=+-.-+||.|+.+.....+.-    
T Consensus       257 ----GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e--------~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l----  320 (498)
T KOG4328|consen  257 ----GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE--------SRSVLFGDNVGNFNVIDLRTDGSEYENLRL----  320 (498)
T ss_pred             ----ceeeeeeecchhhHHHhhcCccceeeeeccccCC--------CccEEEeecccceEEEEeecCCccchhhhh----
Confidence                7999999997753322333233333455566665        346666666669999999997642222211    


Q ss_pred             ccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccccc----ccCCCCCeEEEEECCCCCEEEE-E
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTA----FPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~----L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                                 ++..+.+++++|-.  +||+||.|++.||||++.++ .|..    ...|.-+|.+..|||+|-.||+ +
T Consensus       321 -----------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~  388 (498)
T KOG4328|consen  321 -----------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC  388 (498)
T ss_pred             -----------hhcccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeeeEEcCCCCceEeec
Confidence                       23367889999865  79999999999999988764 4442    2369999999999999988999 7


Q ss_pred             cCCcEEEEEcc
Q 047036          482 TDTYLILICTL  492 (634)
Q Consensus       482 ~D~tIrLWD~~  492 (634)
                      .|++|||||..
T Consensus       389 ~D~~IRv~dss  399 (498)
T KOG4328|consen  389 QDNEIRVFDSS  399 (498)
T ss_pred             cCCceEEeecc
Confidence            79999999963

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=5.8e-13  Score=149.68  Aligned_cols=150  Identities=19%  Similarity=0.227  Sum_probs=123.9

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      -.+.++|++.+|        ..+=-|      .||+++=+.|=|..-+|-||+-.| +++ ++|||        +.+++|
T Consensus       512 L~v~~Spdgk~L--------aVsLLd------nTVkVyflDtlKFflsLYGHkLPV-~sm-DIS~D--------SklivT  567 (888)
T KOG0306|consen  512 LCVSVSPDGKLL--------AVSLLD------NTVKVYFLDTLKFFLSLYGHKLPV-LSM-DISPD--------SKLIVT  567 (888)
T ss_pred             EEEEEcCCCcEE--------EEEecc------CeEEEEEecceeeeeeecccccce-eEE-eccCC--------cCeEEe
Confidence            455666766544        444443      689999999999999999999987 354 99999        569999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      ||.|++|++|-+.=+.| -+.+.+|.+.|               .+|-|-|.. .+.++|.|+.||-||..... ...+|
T Consensus       568 gSADKnVKiWGLdFGDC-HKS~fAHdDSv---------------m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L  630 (888)
T KOG0306|consen  568 GSADKNVKIWGLDFGDC-HKSFFAHDDSV---------------MSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKL  630 (888)
T ss_pred             ccCCCceEEeccccchh-hhhhhcccCce---------------eEEEEcccceeEEEecCcceEEeechhhhh-hheee
Confidence            99999999999887665 46676666543               567777776 68999999999999987763 77899


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      +||...|++++++|+|.+++| |.|.+||||.-
T Consensus       631 ~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  631 DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             ccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            999999999999999999999 99999999963

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.7e-12  Score=134.39  Aligned_cols=216  Identities=16%  Similarity=0.244  Sum_probs=144.1

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                      +.||.++.|      ++|+++|+..-....+|+ |...+  --++|.++         ..+++|+-|+.|++.|+.++..
T Consensus        26 ~~LLvssWD------gslrlYdv~~~~l~~~~~-~~~pl--L~c~F~d~---------~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   26 SDLLVSSWD------GSLRLYDVPANSLKLKFK-HGAPL--LDCAFADE---------STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             CcEEEEecc------CcEEEEeccchhhhhhee-cCCce--eeeeccCC---------ceEEEeccCceEEEEEecCCcc
Confidence            455666665      799999999877766776 44443  34588875         5899999999999999998753


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK  476 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk  476 (634)
                        ..+..|..               .++|+...+ .|.|++||.|++|++||.+.. ....++. -+..|.+++++-+ +
T Consensus        88 --~~igth~~---------------~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~g~-~  147 (323)
T KOG1036|consen   88 --DQIGTHDE---------------GIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVSGN-R  147 (323)
T ss_pred             --eeeccCCC---------------ceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEeccCC-E
Confidence              33444443               357888875 468999999999999997642 2233333 3448999998755 4


Q ss_pred             EEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcc------------------------------
Q 047036          477 WILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSH------------------------------  526 (634)
Q Consensus       477 ~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~------------------------------  526 (634)
                      .|+.+.|..+.+||++..+      .-|+.+...-|=+.|++++.|...-                              
T Consensus       148 LvVg~~~r~v~iyDLRn~~------~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLD------EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             EEEeecCceEEEEEccccc------chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence            4445999999999987321      1232222222455677777773210                              


Q ss_pred             -----------ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccC
Q 047036          527 -----------LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKD  594 (634)
Q Consensus       527 -----------~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~  594 (634)
                                 +..+.+.|+|.     -      .+++| +.|++|.+||+..-++  +              +++.+|+
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~-----~------~tfaTgGsDG~V~~Wd~~~rKr--l--------------~q~~~~~  274 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPI-----H------GTFATGGSDGIVNIWDLFNRKR--L--------------KQLAKYE  274 (323)
T ss_pred             eecccCCceEEEEeceeEeccc-----c------ceEEecCCCceEEEccCcchhh--h--------------hhccCCC
Confidence                       01122344444     1      24445 7899999999874332  1              4789998


Q ss_pred             CCeeeecccc
Q 047036          595 ESIVESRFMH  604 (634)
Q Consensus       595 ~~i~~~~f~~  604 (634)
                      .+|....|-+
T Consensus       275 ~SI~slsfs~  284 (323)
T KOG1036|consen  275 TSISSLSFSM  284 (323)
T ss_pred             CceEEEEecc
Confidence            8899888733

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.47  E-value=3.9e-12  Score=129.98  Aligned_cols=198  Identities=13%  Similarity=0.122  Sum_probs=149.3

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      .|-..+-+|-++.+|++++.|      .++-+|=.-.|+++-+++||++.|  +.+++..+        ...+++||.|+
T Consensus        11 RplTqiKyN~eGDLlFscaKD------~~~~vw~s~nGerlGty~GHtGav--W~~Did~~--------s~~liTGSAD~   74 (327)
T KOG0643|consen   11 RPLTQIKYNREGDLLFSCAKD------STPTVWYSLNGERLGTYDGHTGAV--WCCDIDWD--------SKHLITGSADQ   74 (327)
T ss_pred             cccceEEecCCCcEEEEecCC------CCceEEEecCCceeeeecCCCceE--EEEEecCC--------cceeeeccccc
Confidence            355556678899999999886      589999988899999999999986  56688877        46899999999


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECC------CcEEEEecccc------c
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD------GKIRLYSKTSM------R  453 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D------GtIRLWD~~t~------r  453 (634)
                      +++|||+.+++++ .++                ..+.++..+-|+.+|.++..+.|      +.|-++|++..      +
T Consensus        75 t~kLWDv~tGk~l-a~~----------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   75 TAKLWDVETGKQL-ATW----------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             eeEEEEcCCCcEE-EEe----------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            9999999998653 333                34566778889999976666544      57899998721      1


Q ss_pred             cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCc
Q 047036          454 QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDN  532 (634)
Q Consensus       454 ~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i  532 (634)
                      .+...++-+.+.|+.+-++|-|++|++ -.|+.|.+||++    +|+..   .             +-..+|.+ ....+
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~----~g~~~---v-------------~s~~~h~~-~Ind~  196 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR----TGKEL---V-------------DSDEEHSS-KINDL  196 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc----cCcee---e-------------echhhhcc-ccccc
Confidence            234567778899999999999999999 789999999986    45321   1             11112222 12356


Q ss_pred             ccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          533 KIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       533 ~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      .|+|++          ...|.+|.|....+||+..
T Consensus       197 q~s~d~----------T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  197 QFSRDR----------TYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             cccCCc----------ceEEecccCccceeeeccc
Confidence            777662          2456668999999999974

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.7e-12  Score=140.02  Aligned_cols=202  Identities=12%  Similarity=0.124  Sum_probs=149.9

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      -+-|+.. +++.||+.|   .+|=+|....+.+.     ..++       ..+.+...+-+..|+.+|++++.|      
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----~v~~-------aHYQ~ITcL~fs~dgs~iiTgskD------  144 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----NVLS-------AHYQSITCLKFSDDGSHIITGSKD------  144 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEeccccHH-----HHHH-------hhccceeEEEEeCCCcEEEecCCC------
Confidence            3566666 999999998   58888987775421     1122       336778888899999999999886      


Q ss_pred             CcEEEEeCC---------CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc
Q 047036          333 PGVQQLDIE---------TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       333 ~TIrlWDle---------TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~  403 (634)
                      +.|++|++.         +=+.++.|..|+-.|  +-..+.+-    +.  ...++|+|.|+|||+||+-.+. ++.++ 
T Consensus       145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI--TDl~ig~G----g~--~~rl~TaS~D~t~k~wdlS~g~-LLlti-  214 (476)
T KOG0646|consen  145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI--TDLQIGSG----GT--NARLYTASEDRTIKLWDLSLGV-LLLTI-  214 (476)
T ss_pred             ccEEEEEEEeecccccCCCccceeeeccCccee--EEEEecCC----Cc--cceEEEecCCceEEEEEeccce-eeEEE-
Confidence            789999863         336778899998654  22233332    11  3589999999999999998753 33333 


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---------------cccccccCCCC--C
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---------------QAKTAFPGLGS--P  465 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---------------~akt~L~GH~d--~  465 (634)
                                     .....+.|++.+|.+ .+.+|+.+|.|-+.+..+..               .....|.||.+  +
T Consensus       215 ---------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~  279 (476)
T KOG0646|consen  215 ---------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA  279 (476)
T ss_pred             ---------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence                           134457899999988 79999999999988764311               12235679999  9


Q ss_pred             eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      |++|++|.||..|+| +.|+.++|||+.    .-++++++.
T Consensus       280 ITcLais~DgtlLlSGd~dg~VcvWdi~----S~Q~iRtl~  316 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVCVWDIY----SKQCIRTLQ  316 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEEEEecc----hHHHHHHHh
Confidence            999999999999999 899999999986    344554444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.46  E-value=1.1e-12  Score=136.52  Aligned_cols=257  Identities=18%  Similarity=0.217  Sum_probs=168.9

Q ss_pred             cEEEeee--CCCeEEEe---cCeeeEEEccCCceecc-eeEEEecCCCC---Cc-ccccC---cceeeEEeCCcceEEec
Q 047036          257 QSLTLGA--LDNSFLVS---DLGLQVYRNYNRGIHNK-GVSVRFDGGSS---KI-GSNST---PKKALLMRGETNMMLMS  323 (634)
Q Consensus       257 ~~LavG~--~D~sfvv~---G~~igV~k~~~~gl~~~-~~~~~~~~~~~---~~-g~~fs---P~~~mL~~~D~~mllss  323 (634)
                      |.|--..  ||+|.++.   ++.+.+|....+...-+ .+.+.++-+..   .. +..+.   -..+-+..+++++.+++
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            4455554  89988775   57888888755442211 11222221100   00 00010   01122345677777777


Q ss_pred             CCCCCCCCCCcEEEEeCCCCcEEEEEec--cCCCcc-eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc-CCCC-ce
Q 047036          324 PLKDGKPQAPGVQQLDIETGKIVTEWKF--EKDGTD-ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM-RDRS-GI  398 (634)
Q Consensus       324 s~d~~~~~~~TIrlWDleTGK~V~~lkg--H~~~V~-I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~-R~~~-~~  398 (634)
                      +.+      .-|++||.-||++...+.+  |.+.+. -..++|+||        |++|+.| ..++|+++|+ |.++ |.
T Consensus       130 sr~------~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--------GeqlfaG-ykrcirvFdt~RpGr~c~  194 (406)
T KOG2919|consen  130 SRD------QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--------GEQLFAG-YKRCIRVFDTSRPGRDCP  194 (406)
T ss_pred             ccc------CceeeeeccccccccchhhhhhHHhhhhheeEEecCC--------CCeEeec-ccceEEEeeccCCCCCCc
Confidence            765      4699999999999988865  444331 023599999        7888875 6789999999 7664 33


Q ss_pred             EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK  476 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk  476 (634)
                      +.+...|         + .+...-.++|++++|-.  .+|+||.-..+-||.-..+ ....+|-||+..|++|.|.+||.
T Consensus       195 vy~t~~~---------~-k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  195 VYTTVTK---------G-KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             chhhhhc---------c-cccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcC
Confidence            3222111         1 12234457999999854  7999999999888887665 47788899999999999999999


Q ss_pred             EEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036          477 WILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA  554 (634)
Q Consensus       477 ~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt  554 (634)
                      .|.+  -+|-.|..||++   ..+..+-.+.+|.++-                 ...|-|--+         ...++|++
T Consensus       264 ~lfsGaRk~dkIl~WDiR---~~~~pv~~L~rhv~~T-----------------NQRI~FDld---------~~~~~Las  314 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIR---YSRDPVYALERHVGDT-----------------NQRILFDLD---------PKGEILAS  314 (406)
T ss_pred             eecccccCCCeEEEEeeh---hccchhhhhhhhccCc-----------------cceEEEecC---------CCCceeec
Confidence            9998  468899999998   3566666777777632                 112333322         12367877


Q ss_pred             E-cCCeEEEEeChhh
Q 047036          555 T-VGKFSVIWDFQQV  568 (634)
Q Consensus       555 S-tg~~viiWdl~~v  568 (634)
                      + ++++|.+||+++.
T Consensus       315 G~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  315 GDTDGSVRVWDLKDL  329 (406)
T ss_pred             cCCCccEEEEecCCC
Confidence            5 9999999999863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=6.1e-12  Score=130.97  Aligned_cols=245  Identities=13%  Similarity=0.188  Sum_probs=144.5

Q ss_pred             CCcEEEeee-CCCeEEEe---cCeeeEEEccCCceecc---eeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVS---DLGLQVYRNYNRGIHNK---GVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~---G~~igV~k~~~~gl~~~---~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      +.++-.++| .|+.+++.   +..|+||+..+--.+-+   .+.+.+ +|.  +.+.|.|+-.       ..+++.... 
T Consensus        86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhp--T~V~FapDc~-------s~vv~~~~g-  154 (420)
T KOG2096|consen   86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHP--TRVVFAPDCK-------SVVVSVKRG-  154 (420)
T ss_pred             CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCc--eEEEECCCcc-------eEEEEEccC-
Confidence            455677777 67777765   46888888644211111   111222 221  4566666542       223333321 


Q ss_pred             CCCCCCcEEEEeCC---CCcEEEE------E---eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          328 GKPQAPGVQQLDIE---TGKIVTE------W---KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       328 ~~~~~~TIrlWDle---TGK~V~~------l---kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                           .+|+++-+.   .|+.-..      +   +-|.-.| |.+ -+...        +..|+|+|.|.+|++||++  
T Consensus       155 -----~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~-i~i-GiA~~--------~k~imsas~dt~i~lw~lk--  217 (420)
T KOG2096|consen  155 -----NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI-INI-GIAGN--------AKYIMSASLDTKICLWDLK--  217 (420)
T ss_pred             -----CEEEEEEeeecccCCCCcccccccccccchhcccce-EEE-eecCC--------ceEEEEecCCCcEEEEecC--
Confidence                 467666432   1332111      1   1233222 222 33333        4689999999999999998  


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc-----ccc--cccccCCCCCeE
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM-----RQA--KTAFPGLGSPIT  467 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~-----r~a--kt~L~GH~d~It  467 (634)
                      +++++++..        +|.       .-.-++.||+| +||+++..-+|++|.+--.     +..  ...|.||...|+
T Consensus       218 Gq~L~~idt--------nq~-------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~  282 (420)
T KOG2096|consen  218 GQLLQSIDT--------NQS-------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL  282 (420)
T ss_pred             Cceeeeecc--------ccc-------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence            334555531        011       11345779999 6999999999999997421     112  246889999999


Q ss_pred             EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCC-C--cccccccccccc
Q 047036          468 HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGT-D--NKIHGGHFSWVT  543 (634)
Q Consensus       468 sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~-~--i~Ft~a~Fs~~t  543 (634)
                      +++|||+.+.+++ |.|+++||||+.+.         |  |.   ...|++|+.-|.-.+.+|. +  +.++|.      
T Consensus       283 ~~aFsn~S~r~vtvSkDG~wriwdtdVr---------Y--~~---~qDpk~Lk~g~~pl~aag~~p~RL~lsP~------  342 (420)
T KOG2096|consen  283 AAAFSNSSTRAVTVSKDGKWRIWDTDVR---------Y--EA---GQDPKILKEGSAPLHAAGSEPVRLELSPS------  342 (420)
T ss_pred             eeeeCCCcceeEEEecCCcEEEeeccce---------E--ec---CCCchHhhcCCcchhhcCCCceEEEeCCC------
Confidence            9999999999999 99999999997531         1  11   2345566554322222222 2  222232      


Q ss_pred             cCCCCceEEEEEcCCeEEEEeChh
Q 047036          544 ENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       544 ~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                        |   +.++.|.|..+.++.-+.
T Consensus       343 --g---~~lA~s~gs~l~~~~se~  361 (420)
T KOG2096|consen  343 --G---DSLAVSFGSDLKVFASED  361 (420)
T ss_pred             --C---cEEEeecCCceEEEEccc
Confidence              3   577778888888887764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=2.5e-12  Score=133.67  Aligned_cols=214  Identities=15%  Similarity=0.184  Sum_probs=145.5

Q ss_pred             EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceE
Q 047036          346 VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQ  425 (634)
Q Consensus       346 V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fs  425 (634)
                      +-.|..|...+  +.++++          +..+||||.|.+|+++|++.+.+ +..|..|.+.               ++
T Consensus        36 lF~~~aH~~si--tavAVs----------~~~~aSGssDetI~IYDm~k~~q-lg~ll~Hags---------------it   87 (362)
T KOG0294|consen   36 LFAFSAHAGSI--TALAVS----------GPYVASGSSDETIHIYDMRKRKQ-LGILLSHAGS---------------IT   87 (362)
T ss_pred             cccccccccce--eEEEec----------ceeEeccCCCCcEEEEeccchhh-hcceeccccc---------------eE
Confidence            44678898864  555665          57999999999999999998654 3555444433               57


Q ss_pred             EEEECCCC---eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036          426 CFASTGDG---SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       426 sva~s~dG---~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      |+-|.+.-   +|.+|+.||.|-+|+...- .+..+|.+|...|+.|++.|.|+.-+| +.|..||+|++.    +|+  
T Consensus        88 aL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV----~Gr--  160 (362)
T KOG0294|consen   88 ALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV----RGR--  160 (362)
T ss_pred             EEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh----cCc--
Confidence            77777664   7999999999999998876 477889999999999999999999999 999999999986    333  


Q ss_pred             eeecCCCCCCCCCceeEeecCCCcccc------------C-----CCcccc----cccccccccCCCCceEEEEEcCCeE
Q 047036          502 TGFSGRMGNKIPAPRLLKLTPLDSHLA------------G-----TDNKIH----GGHFSWVTENGKQERHLVATVGKFS  560 (634)
Q Consensus       502 ~gF~gh~~~~~p~pr~L~L~Pe~~~~~------------g-----~~i~Ft----~a~Fs~~t~~g~~E~~IvtStg~~v  560 (634)
                      ..|.-.+.   ..+-++...|...++.            .     ..+.+.    -+.|      +.++.++|+..+..+
T Consensus       161 ~a~v~~L~---~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~------l~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  161 VAFVLNLK---NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF------LDGSELLVGGDNEWI  231 (362)
T ss_pred             cceeeccC---CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee------cCCceEEEecCCceE
Confidence            23433332   2233455555443211            0     011111    2222      234577888888999


Q ss_pred             EEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc---ccCCCCCCCEEE
Q 047036          561 VIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF---AVTDSPEAPLVV  619 (634)
Q Consensus       561 iiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f---~~~~~~~~~iiv  619 (634)
                      ..||-..     ..||           ..+..|...|.+..|.-++|   -...++|..|.|
T Consensus       232 ~~~D~ds-----~~~~-----------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  232 SLKDTDS-----DTPL-----------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV  277 (362)
T ss_pred             EEeccCC-----Cccc-----------eeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence            9999764     2232           35777888888777644433   333344455544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=4.8e-12  Score=144.91  Aligned_cols=211  Identities=14%  Similarity=0.222  Sum_probs=147.9

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC-cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG-KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG-K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      .++++.+++.|++++.|      +.||+|+...- ..-.++.-|...    +.+++..        +..+++|+.+++|+
T Consensus        18 ~i~~d~~gefi~tcgsd------g~ir~~~~~sd~e~P~ti~~~g~~----v~~ia~~--------s~~f~~~s~~~tv~   79 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSD------GDIRKWKTNSDEEEPETIDISGEL----VSSIACY--------SNHFLTGSEQNTVL   79 (933)
T ss_pred             EEEEcCCCCEEEEecCC------CceEEeecCCcccCCchhhccCce----eEEEeec--------ccceEEeeccceEE
Confidence            34455566678888886      57999986543 222333325443    3455554        46899999999999


Q ss_pred             EEEcCCCCc--eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036          389 QWDMRDRSG--IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP  465 (634)
Q Consensus       389 lWD~R~~~~--~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~  465 (634)
                      +.-.-.+..  ++..                  ...++.+++++.+| +||.||.|-.|+|-+.... .....|.||..|
T Consensus        80 ~y~fps~~~~~iL~R------------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~ap  140 (933)
T KOG1274|consen   80 RYKFPSGEEDTILAR------------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAP  140 (933)
T ss_pred             EeeCCCCCccceeee------------------eeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCc
Confidence            998765432  2111                  23467889999999 8999999999999998775 467889999999


Q ss_pred             eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCC--C--CCceeEeecCCCccc-------------
Q 047036          466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNK--I--PAPRLLKLTPLDSHL-------------  527 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~--~--p~pr~L~L~Pe~~~~-------------  527 (634)
                      |.+|+|+|.|.+||+ +||+.|++||+.    +|.++.++.+-....  .  ...-++...|...+.             
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~  216 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS  216 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence            999999999999999 999999999986    677776666644311  1  112334455552111             


Q ss_pred             -cCC-----------CcccccccccccccCCCCceEEEEE-cCCeEEEEeChh
Q 047036          528 -AGT-----------DNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDFQQ  567 (634)
Q Consensus       528 -~g~-----------~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl~~  567 (634)
                       .+.           .-.|+-..|+++   |   ++|+|| .++-|.|||+++
T Consensus       217 r~~we~~f~Lr~~~~ss~~~~~~wsPn---G---~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSSSKFSDLQWSPN---G---KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCceeheeecccccccceEEEEEcCC---C---cEEeeeccCCcEEEEeccc
Confidence             011           112556667764   5   788885 599999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=6.8e-11  Score=118.72  Aligned_cols=231  Identities=14%  Similarity=0.169  Sum_probs=156.3

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeC--CCCcEE---EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCe
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDI--ETGKIV---TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNR  386 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDl--eTGK~V---~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~t  386 (634)
                      ++.++.+|..+++|      ++|+++-.  +|.+.+   -+|..|.+.|+  -++|--+..    +.+.+|++|+ .|+.
T Consensus        97 ws~~geliatgsnd------k~ik~l~fn~dt~~~~g~dle~nmhdgtir--dl~fld~~~----s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   97 WSPCGELIATGSND------KTIKVLPFNADTCNATGHDLEFNMHDGTIR--DLAFLDDPE----SGGAILASAGAGDCK  164 (350)
T ss_pred             ecCccCeEEecCCC------ceEEEEecccccccccCcceeeeecCCcee--eeEEecCCC----cCceEEEecCCCcce
Confidence            34445566666654      79998754  343333   36888988764  458854422    1256888876 5899


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc----ccC
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA----FPG  461 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~----L~G  461 (634)
                      |.+=|...+.. .+.+.||...++               ++- +=+| .+|+||.|.+||+||++-. .+..+    +.+
T Consensus       165 iy~tdc~~g~~-~~a~sghtghil---------------aly-swn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~  226 (350)
T KOG0641|consen  165 IYITDCGRGQG-FHALSGHTGHIL---------------ALY-SWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHD  226 (350)
T ss_pred             EEEeecCCCCc-ceeecCCcccEE---------------EEE-EecCcEEEccCCCceEEEEeeecc-ceeeeccCcccC
Confidence            99999887653 577888876443               111 2245 7999999999999998743 24433    333


Q ss_pred             CC---CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          462 LG---SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       462 H~---d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      -+   ..|.+|++-|.|+.|++ -.|...+|+|++    -|+.++.|.-|..+.    |+              +.|+|.
T Consensus       227 ~glessavaav~vdpsgrll~sg~~dssc~lydir----g~r~iq~f~phsadi----r~--------------vrfsp~  284 (350)
T KOG0641|consen  227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----GGRMIQRFHPHSADI----RC--------------VRFSPG  284 (350)
T ss_pred             CCcccceeEEEEECCCcceeeeccCCCceEEEEee----CCceeeeeCCCccce----eE--------------EEeCCC
Confidence            33   67999999999999999 789999999987    578888888776533    33              455555


Q ss_pred             cccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcccc-CCCCCCC
Q 047036          538 HFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAV-TDSPEAP  616 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~-~~~~~~~  616 (634)
                      ..          ..+..|-|..|.+=||+.-+.-++.            ...+.-|.+.++..+.-...|.| +++-|+.
T Consensus       285 a~----------yllt~syd~~ikltdlqgdla~el~------------~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  285 AH----------YLLTCSYDMKIKLTDLQGDLAHELP------------IMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             ce----------EEEEecccceEEEeecccchhhcCc------------eEEEEeccCceEEEEecCccceeeeccCcce
Confidence            22          3455577888999999866665554            24556677888888885556655 3443444


Q ss_pred             E
Q 047036          617 L  617 (634)
Q Consensus       617 i  617 (634)
                      +
T Consensus       343 ~  343 (350)
T KOG0641|consen  343 A  343 (350)
T ss_pred             E
Confidence            3

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.44  E-value=7.4e-13  Score=153.57  Aligned_cols=169  Identities=14%  Similarity=0.196  Sum_probs=127.6

Q ss_pred             EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe--CCCeEEEEEcCCC----CceEEecccCCCCcccccccccccc
Q 047036          347 TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL--DDNRLCQWDMRDR----SGIVQNMVKGDSPVLHWTQGHQFSR  420 (634)
Q Consensus       347 ~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS--~D~tIklWD~R~~----~~~Vq~l~gh~s~V~~~~~g~~y~~  420 (634)
                      ..|-+|.... |..++++||        +..++||+  .|+.+++|....=    ......+..|-..+        -.+
T Consensus         6 p~wv~H~~~~-IfSIdv~pd--------g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m--------~~h   68 (942)
T KOG0973|consen    6 PTWVNHNEKS-IFSIDVHPD--------GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM--------DDH   68 (942)
T ss_pred             ccccccCCee-EEEEEecCC--------ceeEecCCccccccceeeccccccchhhhhhcccchhheee--------ccc
Confidence            4577888775 566799999        67899999  9999999986521    00000111111100        013


Q ss_pred             CcceEEEEECCCC-eEEEEECCCcEEEEeccc------cc-----------cccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036          421 GTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS------MR-----------QAKTAFPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       421 ~~~fssva~s~dG-~IASGS~DGtIRLWD~~t------~r-----------~akt~L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                      ...++|+-|++|| +||+||+|+.|-+|....      ..           ++...|.||...|..|++|||+.|||| +
T Consensus        69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence            3457899999999 899999999999999872      00           155678999999999999999999999 9


Q ss_pred             cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeE
Q 047036          482 TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFS  560 (634)
Q Consensus       482 ~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~v  560 (634)
                      .|++|.||+.+    +.+++..+.||.+-.                  +.+.|-|.        |   +++++ |.|+.+
T Consensus       149 ~DnsViiwn~~----tF~~~~vl~~H~s~V------------------KGvs~DP~--------G---ky~ASqsdDrti  195 (942)
T KOG0973|consen  149 LDNSVIIWNAK----TFELLKVLRGHQSLV------------------KGVSWDPI--------G---KYFASQSDDRTL  195 (942)
T ss_pred             ccceEEEEccc----cceeeeeeecccccc------------------cceEECCc--------c---CeeeeecCCceE
Confidence            99999999986    678888888887622                  45777776        5   68877 889999


Q ss_pred             EEEeC
Q 047036          561 VIWDF  565 (634)
Q Consensus       561 iiWdl  565 (634)
                      .||..
T Consensus       196 kvwrt  200 (942)
T KOG0973|consen  196 KVWRT  200 (942)
T ss_pred             EEEEc
Confidence            99984

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=7.4e-12  Score=143.38  Aligned_cols=199  Identities=15%  Similarity=0.192  Sum_probs=144.2

Q ss_pred             EEEeeeCCCeEEEe--cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          258 SLTLGALDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       258 ~LavG~~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      +++.+-.-+-|++.  ..+|++|+-...  +..+.+-+|.          .|-..+.++++++|++.+++|      -.|
T Consensus        59 v~~ia~~s~~f~~~s~~~tv~~y~fps~--~~~~iL~Rft----------lp~r~~~v~g~g~~iaagsdD------~~v  120 (933)
T KOG1274|consen   59 VSSIACYSNHFLTGSEQNTVLRYKFPSG--EEDTILARFT----------LPIRDLAVSGSGKMIAAGSDD------TAV  120 (933)
T ss_pred             eEEEeecccceEEeeccceEEEeeCCCC--Cccceeeeee----------ccceEEEEecCCcEEEeecCc------eeE
Confidence            33333344555554  368999985432  1222232331          477778889999999999987      689


Q ss_pred             EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036          336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG  415 (634)
Q Consensus       336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g  415 (634)
                      ++.++..+-.+..++||+..|  ..++|+|.        ++.||+.+-||.|++||+..+.. ..+|.+-. +.+     
T Consensus       121 K~~~~~D~s~~~~lrgh~apV--l~l~~~p~--------~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~-k~n-----  183 (933)
T KOG1274|consen  121 KLLNLDDSSQEKVLRGHDAPV--LQLSYDPK--------GNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVD-KDN-----  183 (933)
T ss_pred             EEEeccccchheeecccCCce--eeeeEcCC--------CCEEEEEecCceEEEEEcccchh-hhhcccCC-ccc-----
Confidence            999999999999999999987  45599997        78999999999999999997643 34443211 110     


Q ss_pred             cccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc-ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          416 HQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA-FPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       416 ~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~-L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                       .+...-.++-++++|+| .+|+.+.|++|++|++.+...+... ..-|...+..+.|||+|+|||+ +.|+-|.|||+.
T Consensus       184 -~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  184 -EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             -cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence             11112234567899985 9999999999999998876322222 2234455999999999999999 999999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=4.6e-12  Score=128.15  Aligned_cols=193  Identities=12%  Similarity=0.106  Sum_probs=134.2

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCC-C--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIET-G--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleT-G--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      ++|.++++|      ++||+..++. |  +.+.+|+||.+.|  .-++|.. -||     |.+|||+|.|+.|.+|--..
T Consensus        24 krlATcsSD------~tVkIf~v~~n~~s~ll~~L~Gh~GPV--wqv~wah-Pk~-----G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   24 KRLATCSSD------GTVKIFEVRNNGQSKLLAELTGHSGPV--WKVAWAH-PKF-----GTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             ceeeeecCC------ccEEEEEEcCCCCceeeeEecCCCCCe--eEEeecc-ccc-----CcEeeEeecCceEEEEecCC
Confidence            457788876      7999999865 3  6889999999987  4568864 355     78999999999999998765


Q ss_pred             CC-ceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEecccc--ccccccccCCCCCeEE
Q 047036          395 RS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSM--RQAKTAFPGLGSPITH  468 (634)
Q Consensus       395 ~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~--r~akt~L~GH~d~Its  468 (634)
                      ++ ........|               ...+.++++-|.  | .||+||.||+|++.+..+-  -........|.-.|++
T Consensus        90 g~w~k~~e~~~h---------------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns  154 (299)
T KOG1332|consen   90 GRWTKAYEHAAH---------------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS  154 (299)
T ss_pred             Cchhhhhhhhhh---------------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence            42 001112222               333567777665  4 5999999999999886542  1122345589999999


Q ss_pred             EEECCC---C-----------CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036          469 VDVTYD---G-----------KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK  533 (634)
Q Consensus       469 VdfSpD---G-----------k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~  533 (634)
                      |+..|-   |           +.|+| +||+.|+||+..-  ..=..-.+|++|.+=                  ..++.
T Consensus       155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~--~~w~~e~~l~~H~dw------------------VRDVA  214 (299)
T KOG1332|consen  155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS--DSWKLERTLEGHKDW------------------VRDVA  214 (299)
T ss_pred             eeecCcCCCccccccCcccccceeeccCCccceeeeecCC--cchhhhhhhhhcchh------------------hhhhh
Confidence            999998   7           77999 9999999998531  111222346777641                  12344


Q ss_pred             cccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          534 IHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       534 Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      ..|.     .  |-...+|++ |.|+.|+||--.
T Consensus       215 waP~-----~--gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  215 WAPS-----V--GLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             hccc-----c--CCCceeeEEecCCCcEEEEEec
Confidence            4444     3  223457777 679999999765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=2.7e-12  Score=134.41  Aligned_cols=138  Identities=20%  Similarity=0.258  Sum_probs=107.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V~~  411 (634)
                      ++||++|..||+.+++|++|...++  .+.|..+.   +   +..+.||+.||+||+||+|+.++. +...         
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N--~vrf~~~d---s---~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~---------  112 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTN--GVRFISCD---S---PHGVISCSSDGTVRLWDIRSQAESARISW---------  112 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCccc--ceEEecCC---C---CCeeEEeccCCeEEEEEeecchhhhheec---------
Confidence            6899999999999999999998764  55887642   1   578999999999999999987542 1111         


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEE----CCCcEEEEecccccc-ccccccCCCCCeEEEEECCCC-CEEEE-EcC
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGS----LDGKIRLYSKTSMRQ-AKTAFPGLGSPITHVDVTYDG-KWILG-TTD  483 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS----~DGtIRLWD~~t~r~-akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D  483 (634)
                       .   ++ ...+|.|++....+ .|+.|.    .|-.+.|||++..++ .......|.+-||+|.|.|.- ..||| |.|
T Consensus       113 -~---~~-~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  113 -T---QQ-SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             -c---CC-CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence             1   11 24578999887555 677775    577899999987544 334567999999999999976 56677 999


Q ss_pred             CcEEEEEcc
Q 047036          484 TYLILICTL  492 (634)
Q Consensus       484 ~tIrLWD~~  492 (634)
                      +.|.|+|+.
T Consensus       188 GLvnlfD~~  196 (376)
T KOG1188|consen  188 GLVNLFDTK  196 (376)
T ss_pred             ceEEeeecC
Confidence            999999987

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.41  E-value=1.5e-12  Score=145.48  Aligned_cols=211  Identities=14%  Similarity=0.170  Sum_probs=155.4

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      +..+.+|++..|+.+|+              -++||++|+..-+.......|...|  -++.|+.-    .++ ..+||+
T Consensus       463 R~~~vSp~gqhLAsGDr--------------~GnlrVy~Lq~l~~~~~~eAHesEi--lcLeyS~p----~~~-~kLLAS  521 (1080)
T KOG1408|consen  463 RALAVSPDGQHLASGDR--------------GGNLRVYDLQELEYTCFMEAHESEI--LCLEYSFP----VLT-NKLLAS  521 (1080)
T ss_pred             EEEEECCCcceecccCc--------------cCceEEEEehhhhhhhheeccccee--EEEeecCc----hhh-hHhhhh
Confidence            44556666665554443              2789999999888888899999875  33466532    233 469999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccc----------------------------------cccccccCcceEE
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT----------------------------------QGHQFSRGTNFQC  426 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~----------------------------------~g~~y~~~~~fss  426 (634)
                      ||.|+.|.++|+...-.++|+|.+|++.|+.-.                                  .+|+-..+..+.-
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD  601 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD  601 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence            999999999999754457788888887654311                                  1111123444556


Q ss_pred             EEECCCC-eEEEEECCCcEEEEecccccccccccc---CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036          427 FASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP---GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       427 va~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~---GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      ++..|.- ++++++.|..||+||+.+++ .+.+|+   +|.+...-|.+-|.|-|||+ ..|++|.++|..    .|+|+
T Consensus       602 m~Vdp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~----sgEcv  676 (1080)
T KOG1408|consen  602 MAVDPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV----SGECV  676 (1080)
T ss_pred             eeeCCCcceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec----cchhh
Confidence            6777765 89999999999999999885 667777   46567788999999999999 669999999975    79999


Q ss_pred             eeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE-EEEcCCeEEEEeCh
Q 047036          502 TGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL-VATVGKFSVIWDFQ  566 (634)
Q Consensus       502 ~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I-vtStg~~viiWdl~  566 (634)
                      ....||...                  ...+.|++++           ++| ..|.|+-|+||-|.
T Consensus       677 A~m~GHsE~------------------VTG~kF~nDC-----------kHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  677 AQMTGHSEA------------------VTGVKFLNDC-----------KHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hhhcCcchh------------------eeeeeecccc-----------hhheeecCCceEEEEECc
Confidence            988888631                  1357777763           344 45889999999884

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.38  E-value=7.7e-12  Score=129.45  Aligned_cols=112  Identities=15%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEE
Q 047036          358 ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIV  436 (634)
Q Consensus       358 I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IA  436 (634)
                      |+.++|||..       ..+++.||.|++||+|++...+..+-.-              ++.+.-++.+++++.+| .++
T Consensus        30 IS~l~FSP~~-------~~~~~A~SWD~tVR~wevq~~g~~~~ka--------------~~~~~~PvL~v~WsddgskVf   88 (347)
T KOG0647|consen   30 ISALAFSPQA-------DNLLAAGSWDGTVRIWEVQNSGQLVPKA--------------QQSHDGPVLDVCWSDDGSKVF   88 (347)
T ss_pred             hheeEecccc-------CceEEecccCCceEEEEEecCCcccchh--------------hhccCCCeEEEEEccCCceEE
Confidence            4678999942       3578899999999999998643221100              12234456789999999 799


Q ss_pred             EEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC--EEEE-EcCCcEEEEEcc
Q 047036          437 VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK--WILG-TTDTYLILICTL  492 (634)
Q Consensus       437 SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk--~LlS-S~D~tIrLWD~~  492 (634)
                      +|+-|+.++|||+.++  ....+-.|..||..+.|=+-..  .|++ |-|+||+.||++
T Consensus        89 ~g~~Dk~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             eeccCCceEEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            9999999999999986  3466778999999999988777  7888 999999999986

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.38  E-value=1.1e-11  Score=140.95  Aligned_cols=194  Identities=15%  Similarity=0.210  Sum_probs=140.9

Q ss_pred             CCCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          254 GGVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       254 ~~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      .+++.+||+- ..+.|++-|   -.|.+|.. ..|++-+    .|. .   +-..=.|...+..++-++.+++++.+   
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm-QSGi~r~----sf~-~---~~ah~~~V~gla~D~~n~~~vsa~~~---  514 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNM-QSGIHRK----SFG-D---SPAHKGEVTGLAVDGTNRLLVSAGAD---  514 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEc-ccCeeec----ccc-c---CccccCceeEEEecCCCceEEEccCc---
Confidence            4678999998 899999987   47778874 4454321    121 0   00111244444455555567777765   


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                         +-++.||...+..+..|+-....   .....+..        ..+++.+.+|-.|++.|+.+++ +|+.+.||+.  
T Consensus       515 ---Gilkfw~f~~k~l~~~l~l~~~~---~~iv~hr~--------s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~n--  577 (910)
T KOG1539|consen  515 ---GILKFWDFKKKVLKKSLRLGSSI---TGIVYHRV--------SDLLAIALDDFSIRVVDVVTRK-VVREFWGHGN--  577 (910)
T ss_pred             ---ceEEEEecCCcceeeeeccCCCc---ceeeeeeh--------hhhhhhhcCceeEEEEEchhhh-hhHHhhcccc--
Confidence               78999999988888888755432   22233333        4689999999999999998854 6777877655  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC-CcE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD-TYL  486 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D-~tI  486 (634)
                                   +++.++||||| .|++++.|++||+||+.++. +.-.| ....|.++|.|||+|.+||+ ..| +-|
T Consensus       578 -------------ritd~~FS~DgrWlisasmD~tIr~wDlpt~~-lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gI  642 (910)
T KOG1539|consen  578 -------------RITDMTFSPDGRWLISASMDSTIRTWDLPTGT-LIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGI  642 (910)
T ss_pred             -------------ceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-eeeeE-ecCCcceeeEECCCCCEEEEEEecCceE
Confidence                         45788999999 79999999999999998874 44333 25689999999999999999 666 889


Q ss_pred             EEEEc
Q 047036          487 ILICT  491 (634)
Q Consensus       487 rLWD~  491 (634)
                      .||-.
T Consensus       643 ylWsN  647 (910)
T KOG1539|consen  643 YLWSN  647 (910)
T ss_pred             EEEEc
Confidence            99964

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.37  E-value=4.5e-12  Score=132.32  Aligned_cols=190  Identities=16%  Similarity=0.231  Sum_probs=129.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.||+.|+.++++...+.||...|+  -..|.|+.       .+++++||.|.+||+|++++..| |..+.|.       
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sIN--eik~~p~~-------~qlvls~SkD~svRlwnI~~~~C-v~VfGG~-------  177 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSIN--EIKFHPDR-------PQLVLSASKDHSVRLWNIQTDVC-VAVFGGV-------  177 (385)
T ss_pred             eEEEEEecchhhhccceeccCccch--hhhcCCCC-------CcEEEEecCCceEEEEeccCCeE-EEEeccc-------
Confidence            7999999999999999999999865  44888872       47999999999999999998765 4555431       


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--c-------------------ccccccC------CCC
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--Q-------------------AKTAFPG------LGS  464 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~-------------------akt~L~G------H~d  464 (634)
                       .||.+    .+.++-++.+| +|||++.|.+|+||++...+  .                   .++.||.      |.+
T Consensus       178 -egHrd----eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn  252 (385)
T KOG1034|consen  178 -EGHRD----EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN  252 (385)
T ss_pred             -ccccC----cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence             23322    35678899999 89999999999999987321  0                   1122332      445


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCc----eeEeecCCCccccCCCcccccccc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP----RLLKLTPLDSHLAGTDNKIHGGHF  539 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~p----r~L~L~Pe~~~~~g~~i~Ft~a~F  539 (634)
                      +|-+|.|=  |.+|+| ||++.|..|-.      |+.    .-...+.+|..    .+..+.     +..-++-|.+=.|
T Consensus       253 yVDCvrw~--gd~ilSkscenaI~~w~p------gkl----~e~~~~vkp~es~~Ti~~~~~-----~~~c~iWfirf~~  315 (385)
T KOG1034|consen  253 YVDCVRWF--GDFILSKSCENAIVCWKP------GKL----EESIHNVKPPESATTILGEFD-----YPMCDIWFIRFAF  315 (385)
T ss_pred             hHHHHHHH--hhheeecccCceEEEEec------chh----hhhhhccCCCccceeeeeEec-----cCccceEEEEEee
Confidence            55555443  579999 99999999974      321    11111222321    111111     0012456777777


Q ss_pred             cccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          540 SWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       540 s~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      ++.      .++||. ...+.|++|||+.
T Consensus       316 d~~------~~~la~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  316 DPW------QKMLALGNQSGKVYVWDLDN  338 (385)
T ss_pred             cHH------HHHHhhccCCCcEEEEECCC
Confidence            763      256666 4688899999973

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.37  E-value=1.1e-11  Score=131.10  Aligned_cols=138  Identities=16%  Similarity=0.202  Sum_probs=102.8

Q ss_pred             CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC---cEEEE
Q 047036          273 LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG---KIVTE  348 (634)
Q Consensus       273 ~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG---K~V~~  348 (634)
                      .+|.+|+...++  ++.-...|.+| .++-..+++|..       .+|+++++-|      ++||+||+..|   -++.+
T Consensus       234 ~~I~lw~~~~g~--W~vd~~Pf~gH~~SVEDLqWSptE-------~~vfaScS~D------gsIrIWDiRs~~~~~~~~~  298 (440)
T KOG0302|consen  234 KGIHLWEPSTGS--WKVDQRPFTGHTKSVEDLQWSPTE-------DGVFASCSCD------GSIRIWDIRSGPKKAAVST  298 (440)
T ss_pred             cceEeeeeccCc--eeecCccccccccchhhhccCCcc-------CceEEeeecC------ceEEEEEecCCCccceeEe
Confidence            477888866633  44445556666 345677788763       4677788776      79999999999   45554


Q ss_pred             EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC--CceEEecccCCCCccccccccccccCcceEE
Q 047036          349 WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR--SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQC  426 (634)
Q Consensus       349 lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~--~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fss  426 (634)
                       +.|...|  .|++|+..        -.+||+|++|++++|||+|.-  +++|.++..|               +.+++|
T Consensus       299 -kAh~sDV--NVISWnr~--------~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---------------k~pIts  352 (440)
T KOG0302|consen  299 -KAHNSDV--NVISWNRR--------EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---------------KAPITS  352 (440)
T ss_pred             -eccCCce--eeEEccCC--------cceeeecCCCceEEEEEhhhccCCCcceeEEec---------------cCCeeE
Confidence             8999876  47788865        248999999999999999963  3455555544               445789


Q ss_pred             EEECCC--CeEEEEECCCcEEEEeccc
Q 047036          427 FASTGD--GSIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       427 va~s~d--G~IASGS~DGtIRLWD~~t  451 (634)
                      +.++|.  +.||++|.|.+|.|||+..
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeec
Confidence            999875  4799999999999999863

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.35  E-value=2.3e-10  Score=113.50  Aligned_cols=132  Identities=21%  Similarity=0.316  Sum_probs=106.5

Q ss_pred             CcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +++++||+.. +..+..+.+|...|  ..++|+|+        +..+++++. |+++++|+++... .+..+.+|..   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---  199 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESV--TSLAFSPD--------GKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTD---  199 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccE--EEEEECCC--------CCEEEecCCCCCceEEEEcCCCc-eEEeeccCCC---
Confidence            7999999998 89999999999976  46699998        567888886 9999999998743 4566654443   


Q ss_pred             ccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc-cccCCCCCeEEEEECCCCCEEEE-EcCCcE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPITHVDVTYDGKWILG-TTDTYL  486 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~ItsVdfSpDGk~LlS-S~D~tI  486 (634)
                                  .+.++++++++  .+++++.|++|++||...+. ... .+.+|...+ -..|+|+|.++++ +.|+++
T Consensus       200 ------------~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~  265 (466)
T COG2319         200 ------------PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI  265 (466)
T ss_pred             ------------ceEEEEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCCCCcce-eEeECCCCCEEEEecCCCcE
Confidence                        35788888888  34555999999999977543 444 688999886 4499999988887 999999


Q ss_pred             EEEEcc
Q 047036          487 ILICTL  492 (634)
Q Consensus       487 rLWD~~  492 (634)
                      ++|++.
T Consensus       266 ~~~~~~  271 (466)
T COG2319         266 RLWDLR  271 (466)
T ss_pred             EEeeec
Confidence            999976

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.33  E-value=5.2e-12  Score=133.14  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=112.1

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      ..+.|+|.       +.+.|.++++|      ++|.|+|+.+++.+++..  .-++    . ++|+|.        +-.+
T Consensus       191 ~svkfNpv-------ETsILas~~sD------rsIvLyD~R~~~Pl~KVi~~mRTN----~-IswnPe--------afnF  244 (433)
T KOG0268|consen  191 SSVKFNPV-------ETSILASCASD------RSIVLYDLRQASPLKKVILTMRTN----T-ICWNPE--------AFNF  244 (433)
T ss_pred             eEEecCCC-------cchheeeeccC------CceEEEecccCCccceeeeecccc----c-eecCcc--------ccce
Confidence            44555554       34556666665      689999999998887643  3333    2 399996        4578


Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                      ++|+.|..|..+|+|.-..+++...+|.+.|               ..|.|||-| -||+||.|.+||||.+..++ ...
T Consensus       245 ~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRd  308 (433)
T KOG0268|consen  245 VAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRD  308 (433)
T ss_pred             eeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCCCc-chh
Confidence            9999999999999996555556666665544               567889999 59999999999999987653 111


Q ss_pred             cc-cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          458 AF-PGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       458 ~L-~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .. .--..-|.+|.+|.|.+||+| |.|+.||||-..
T Consensus       309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            11 112246999999999999999 899999999865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=4e-11  Score=121.47  Aligned_cols=193  Identities=11%  Similarity=0.078  Sum_probs=132.5

Q ss_pred             CcEEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          256 VQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       256 ~~~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      ++-||.++.|+       +|+||....+|.  -....+|.||. |+--++|      +|-.-+++|.+++.|      +.
T Consensus        23 gkrlATcsSD~-------tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~w------ahPk~G~iLAScsYD------gk   81 (299)
T KOG1332|consen   23 GKRLATCSSDG-------TVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAW------AHPKFGTILASCSYD------GK   81 (299)
T ss_pred             cceeeeecCCc-------cEEEEEEcCCCC--ceeeeEecCCCCCeeEEee------cccccCcEeeEeecC------ce
Confidence            45677777665       466777666552  12456777772 2222222      222345667777776      78


Q ss_pred             EEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-eEEe-cccCCCCcc
Q 047036          335 VQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-IVQN-MVKGDSPVL  410 (634)
Q Consensus       335 IrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-~Vq~-l~gh~s~V~  410 (634)
                      |.+|.-+.|+-  ..++..|...|+  .++|.|..-      |-.||+||+|++|.+.+.+..+. .... ...|.    
T Consensus        82 VIiWke~~g~w~k~~e~~~h~~SVN--sV~waphey------gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~----  149 (299)
T KOG1332|consen   82 VIIWKEENGRWTKAYEHAAHSASVN--SVAWAPHEY------GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE----  149 (299)
T ss_pred             EEEEecCCCchhhhhhhhhhcccce--eeccccccc------ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc----
Confidence            99999998853  456889999986  559999732      56899999999999999987521 1111 12222    


Q ss_pred             ccccccccccCcceEEEEECCC---------------CeEEEEECCCcEEEEeccccc-cccccccCCCCCeEEEEECCC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGD---------------GSIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYD  474 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~d---------------G~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpD  474 (634)
                                 .-+++++..|.               -+||||+.|+.|+||+....+ .+-.+|.+|.+.|+.|+..|.
T Consensus       150 -----------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  150 -----------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS  218 (299)
T ss_pred             -----------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence                       22334433332               259999999999999976532 133569999999999999997


Q ss_pred             C----CEEEE-EcCCcEEEEEcc
Q 047036          475 G----KWILG-TTDTYLILICTL  492 (634)
Q Consensus       475 G----k~LlS-S~D~tIrLWD~~  492 (634)
                      =    .+||| |.|+++.||-..
T Consensus       219 ~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  219 VGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             cCCCceeeEEecCCCcEEEEEec
Confidence            5    57899 999999999754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.4e-11  Score=126.53  Aligned_cols=222  Identities=17%  Similarity=0.175  Sum_probs=148.7

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      ..+.|+|-+-+        |.+|..|      +.|-+||.-|-.+-+.|.+|.-.|  +.+++|+|        |+.|+|
T Consensus        27 ~~~~Fs~~G~~--------lAvGc~n------G~vvI~D~~T~~iar~lsaH~~pi--~sl~WS~d--------gr~Llt   82 (405)
T KOG1273|consen   27 ECCQFSRWGDY--------LAVGCAN------GRVVIYDFDTFRIARMLSAHVRPI--TSLCWSRD--------GRKLLT   82 (405)
T ss_pred             ceEEeccCcce--------eeeeccC------CcEEEEEccccchhhhhhccccce--eEEEecCC--------CCEeee
Confidence            45667766644        4455554      789999999999999999999865  67899999        789999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCcccccccc--------------------------ccc-------cCcceEEE
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGH--------------------------QFS-------RGTNFQCF  427 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~--------------------------~y~-------~~~~fssv  427 (634)
                      +|.|+.|++||++.+.+ ++.+. -.+||+. .+.|                          .+-       .+..-++.
T Consensus        83 sS~D~si~lwDl~~gs~-l~rir-f~spv~~-~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   83 SSRDWSIKLWDLLKGSP-LKRIR-FDSPVWG-AQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG  159 (405)
T ss_pred             ecCCceeEEEeccCCCc-eeEEE-ccCccce-eeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc
Confidence            99999999999997653 33321 1222211 0111                          000       11112334


Q ss_pred             EECCCC-eEEEEECCCcEEEEeccccccccccccCCC-CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036          428 ASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLG-SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       428 a~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~-d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      .|.+.| +|.+|...|.|-+||..+.+ +...+.-.. ..|.+|-|+..|+.|+. |.|..||.+++.-.+..|+     
T Consensus       160 ~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r-----  233 (405)
T KOG1273|consen  160 VFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR-----  233 (405)
T ss_pred             cccCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc-----
Confidence            567777 89999999999999998863 666555444 78999999999999999 9999999999762221121     


Q ss_pred             cCCCCCCCCCceeEeecCCCccc-cCCCcccccccccccccCCCCceEEEEE--cCCeEEEEe-----Chhhhcccc
Q 047036          505 SGRMGNKIPAPRLLKLTPLDSHL-AGTDNKIHGGHFSWVTENGKQERHLVAT--VGKFSVIWD-----FQQVKNSAH  573 (634)
Q Consensus       505 ~gh~~~~~p~pr~L~L~Pe~~~~-~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS--tg~~viiWd-----l~~v~~~~~  573 (634)
                                  -..+.|+|-.. ..+.+....++|+. +  |  | +|+++  ...-++||-     |-+||.|..
T Consensus       234 ------------~~e~e~~~K~qDvVNk~~Wk~ccfs~-d--g--e-Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  234 ------------DGEVEPEHKLQDVVNKLQWKKCCFSG-D--G--E-YVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             ------------cCCcChhHHHHHHHhhhhhhheeecC-C--c--c-EEEeccccceeEEEEecCCcceeeeecCCc
Confidence                        11233444211 12345677888874 2  3  4 56553  356789994     446666543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.31  E-value=2.1e-11  Score=128.61  Aligned_cols=133  Identities=12%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      .|-+||.+.-..++.+.--.+.  |.++.|+|-.       -..|++|.+|++|-|+|+|+.. +++.+.          
T Consensus       168 ~i~IWD~~R~~Pv~smswG~Dt--i~svkfNpvE-------TsILas~~sDrsIvLyD~R~~~-Pl~KVi----------  227 (433)
T KOG0268|consen  168 QIDIWDEQRDNPVSSMSWGADS--ISSVKFNPVE-------TSILASCASDRSIVLYDLRQAS-PLKKVI----------  227 (433)
T ss_pred             eeeecccccCCccceeecCCCc--eeEEecCCCc-------chheeeeccCCceEEEecccCC-ccceee----------
Confidence            4999999999999998777775  4566999862       2589999999999999999864 233321          


Q ss_pred             cccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                            .+..-..+|++|.+ .+++|+.|..+.+||.+.+..+.....+|.+.|.+|+|||-|+-++| |.|++|||+.+
T Consensus       228 ------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  228 ------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             ------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence                  12223567889988 58999999999999976655555667799999999999999999999 99999999997


Q ss_pred             c
Q 047036          492 L  492 (634)
Q Consensus       492 ~  492 (634)
                      .
T Consensus       302 ~  302 (433)
T KOG0268|consen  302 N  302 (433)
T ss_pred             C
Confidence            5

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.29  E-value=1.7e-11  Score=130.48  Aligned_cols=142  Identities=12%  Similarity=0.116  Sum_probs=108.2

Q ss_pred             EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC------ceEEecccCCCCccccccccccccC
Q 047036          348 EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS------GIVQNMVKGDSPVLHWTQGHQFSRG  421 (634)
Q Consensus       348 ~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~------~~Vq~l~gh~s~V~~~~~g~~y~~~  421 (634)
                      .+.||+..| +.+ +|+|-.       .+.|||||.|.+|++|++-..+      .+|..|.||...|            
T Consensus        76 ~v~GHt~~v-LDi-~w~Pfn-------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV------------  134 (472)
T KOG0303|consen   76 LVCGHTAPV-LDI-DWCPFN-------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV------------  134 (472)
T ss_pred             CccCccccc-ccc-ccCccC-------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE------------
Confidence            468999987 344 888852       4799999999999999975432      2345566665433            


Q ss_pred             cceEEEEECCC--CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC
Q 047036          422 TNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG  498 (634)
Q Consensus       422 ~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G  498 (634)
                         -.++..|-  ..|+|+|.|++|.|||+.++. +..+|. |.+.|++++|+.||.+|++ +.|+.||+||.+    +|
T Consensus       135 ---g~V~wHPtA~NVLlsag~Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr----~~  205 (472)
T KOG0303|consen  135 ---GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR----RG  205 (472)
T ss_pred             ---EEEeecccchhhHhhccCCceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCC----CC
Confidence               34455554  368999999999999999984 777777 9999999999999999999 679999999986    67


Q ss_pred             CeeeeecCCCCCCCCCceeEeec
Q 047036          499 KTKTGFSGRMGNKIPAPRLLKLT  521 (634)
Q Consensus       499 ~~~~gF~gh~~~~~p~pr~L~L~  521 (634)
                      +.+..-.+|.|.+  ++|.+-|.
T Consensus       206 ~~v~e~~~heG~k--~~Raifl~  226 (472)
T KOG0303|consen  206 TVVSEGVAHEGAK--PARAIFLA  226 (472)
T ss_pred             cEeeecccccCCC--cceeEEec
Confidence            7776667777743  23555443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.29  E-value=4.5e-11  Score=124.98  Aligned_cols=229  Identities=14%  Similarity=0.132  Sum_probs=140.2

Q ss_pred             CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CC--cEEEEEec--cCCCcceeEEEEecCCCCCCCCC
Q 047036          300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TG--KIVTEWKF--EKDGTDITMRDITNDTKSSQLDP  374 (634)
Q Consensus       300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TG--K~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~  374 (634)
                      +-|++|.+-   +--.+.....+.+.       +.|.++... .|  ++++.+..  |...  ..-++++-+..-    +
T Consensus        41 I~gv~fN~~---~~~~e~~vfatvG~-------~rvtiy~c~~d~~ir~lq~y~D~d~~Es--fytcsw~yd~~~----~  104 (385)
T KOG1034|consen   41 IFGVAFNSF---LGCDEPQVFATVGG-------NRVTIYECPGDGGIRLLQSYADEDHDES--FYTCSWSYDSNT----G  104 (385)
T ss_pred             cceeeeehh---cCCCCCceEEEeCC-------cEEEEEEECCccceeeeeeccCCCCCcc--eEEEEEEecCCC----C
Confidence            356666532   22233334444444       245555533 23  55666543  3332  234588877542    1


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc
Q 047036          375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~  452 (634)
                      +-.+|.|+.-|.||+.|+.++. +...+.||...|               ..+-|-|..  +|++||.|-+||||++++.
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~-~~~~~~ghG~sI---------------Neik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQ-CSKNYRGHGGSI---------------NEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             CeeEEeecceeEEEEEecchhh-hccceeccCccc---------------hhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            3589999999999999998765 457788887654               344556665  7999999999999999886


Q ss_pred             ccccccc---cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC--CeeeeecCCCCCCCCCceeEeecCCCcc
Q 047036          453 RQAKTAF---PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG--KTKTGFSGRMGNKIPAPRLLKLTPLDSH  526 (634)
Q Consensus       453 r~akt~L---~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G--~~~~gF~gh~~~~~p~pr~L~L~Pe~~~  526 (634)
                      . +...|   .||.+.|.+|+|++||.+|+| ++|.+|+||++..++...  ++..+|... +...|-|+.-.+.|.-..
T Consensus       169 ~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~-~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  169 V-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN-KTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             e-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC-CccCcCCccccccccccc
Confidence            3 65544   589999999999999999999 999999999986433222  222223211 122355555554554210


Q ss_pred             ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhc
Q 047036          527 LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKN  570 (634)
Q Consensus       527 ~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~  570 (634)
                      .  .-..+--++--| -  |   ..|++ |.++-|+.|-.-++.+
T Consensus       247 ~--diHrnyVDCvrw-~--g---d~ilSkscenaI~~w~pgkl~e  283 (385)
T KOG1034|consen  247 T--DIHRNYVDCVRW-F--G---DFILSKSCENAIVCWKPGKLEE  283 (385)
T ss_pred             c--ccccchHHHHHH-H--h---hheeecccCceEEEEecchhhh
Confidence            0  000000111111 1  3   35666 8899999998744443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.28  E-value=2.3e-11  Score=132.25  Aligned_cols=196  Identities=14%  Similarity=0.206  Sum_probs=131.8

Q ss_pred             CCcEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecC-CCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDG-GSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~-~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      +.-++||.. +..+.|-.|  .-|.||....-|-..-...+..-. ...++++...        .|++.||.++.-    
T Consensus       419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--------pdgrtLivGGea----  486 (705)
T KOG0639|consen  419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGRTLIVGGEA----  486 (705)
T ss_pred             CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec--------CCCceEEecccc----
Confidence            444788887 677777766  467889875443111111111100 0112333333        344556666653    


Q ss_pred             CCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          331 QAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       331 ~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                        .||-+||+.+-  ++-.++....-.  -..++++||        ....|++..|+.|.+||++.. .+|..|.||.+.
T Consensus       487 --stlsiWDLAapTprikaeltssapa--CyALa~spD--------akvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDG  553 (705)
T KOG0639|consen  487 --STLSIWDLAAPTPRIKAELTSSAPA--CYALAISPD--------AKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDG  553 (705)
T ss_pred             --ceeeeeeccCCCcchhhhcCCcchh--hhhhhcCCc--------cceeeeeccCCcEEEEEcccc-eeeecccCCCCC
Confidence              69999999764  344445432221  134588999        458999999999999999974 468889888764


Q ss_pred             ccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc-CCcE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT-DTYL  486 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~-D~tI  486 (634)
                                     .+|+.++++| .|-+|+.|++||-||++.+|+...  ......|.+|..+|.|.|||.+| .+.+
T Consensus       554 ---------------ascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~v  616 (705)
T KOG0639|consen  554 ---------------ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNV  616 (705)
T ss_pred             ---------------ceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcE
Confidence                           3799999999 799999999999999887653211  13457899999999999999966 4666


Q ss_pred             EEEEcc
Q 047036          487 ILICTL  492 (634)
Q Consensus       487 rLWD~~  492 (634)
                      -|..+.
T Consensus       617 evlh~s  622 (705)
T KOG0639|consen  617 EVLHTS  622 (705)
T ss_pred             EEEecC
Confidence            666653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.28  E-value=9.4e-10  Score=109.11  Aligned_cols=178  Identities=18%  Similarity=0.312  Sum_probs=123.3

Q ss_pred             CcEEEEeCCCCc-EEEEEeccCC-CcceeEEEE-ecCCCCCCCCCCC-EEEEEeC-CCeEEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGK-IVTEWKFEKD-GTDITMRDI-TNDTKSSQLDPSE-STFLGLD-DNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK-~V~~lkgH~~-~V~I~vvsf-sPd~K~~q~~~g~-~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                      +.+.+|+...+. .+..+.++.. .+  ....+ +++        +. .++..+. |+++++||+......+..+.+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  156 (466)
T COG2319          87 GTIKLWDLDNGEKLIKSLEGLHDSSV--SKLALSSPD--------GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE  156 (466)
T ss_pred             CcEEEEEcCCCceeEEEEeccCCCce--eeEEEECCC--------cceEEeccCCCCccEEEEEecCCCeEEEEEecCcc
Confidence            689999999887 8888888543 32  23344 565        33 4455444 999999999862233445544433


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEE-EcC
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILG-TTD  483 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlS-S~D  483 (634)
                                     .+.++++++++ .+++++. |+.|++|+.... .....+.+|..+|.+++++|+|. .+++ +.|
T Consensus       157 ---------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         157 ---------------SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             ---------------cEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence                           34688999999 7888885 999999998764 35677888999999999999998 6667 889


Q ss_pred             CcEEEEEcccccCCCCeee-eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEE
Q 047036          484 TYLILICTLFSDKDGKTKT-GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVI  562 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~-gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vii  562 (634)
                      ++|++||..    .+..+. .+.+|...                   . +.    .|++.   +  ...+.++.++.+.+
T Consensus       221 ~~i~~wd~~----~~~~~~~~~~~~~~~-------------------~-~~----~~~~~---~--~~~~~~~~d~~~~~  267 (466)
T COG2319         221 GTIRLWDLS----TGKLLRSTLSGHSDS-------------------V-VS----SFSPD---G--SLLASGSSDGTIRL  267 (466)
T ss_pred             CcEEEEECC----CCcEEeeecCCCCcc-------------------e-eE----eECCC---C--CEEEEecCCCcEEE
Confidence            999999864    455444 34444320                   0 11    34321   2  24455678999999


Q ss_pred             EeChhhh
Q 047036          563 WDFQQVK  569 (634)
Q Consensus       563 Wdl~~v~  569 (634)
                      |++....
T Consensus       268 ~~~~~~~  274 (466)
T COG2319         268 WDLRSSS  274 (466)
T ss_pred             eeecCCC
Confidence            9987433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=2.9e-10  Score=131.91  Aligned_cols=242  Identities=15%  Similarity=0.189  Sum_probs=148.9

Q ss_pred             CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcce---eeEEeCCcceEEecCCCCCCCCCCcEEE
Q 047036          264 LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKK---ALLMRGETNMMLMSPLKDGKPQAPGVQQ  337 (634)
Q Consensus       264 ~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~---~mL~~~D~~mllsss~d~~~~~~~TIrl  337 (634)
                      .|.+.++.++   .|+||+...++ ..+-..++-.  .+..+..+.+.+   ++-..+.+-.|+.+++-      +.||+
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~-~~~~eLVTaw--~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~------r~IRI 1191 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADK-WKKPELVTAW--SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV------RSIRI 1191 (1387)
T ss_pred             cchhheeeeccCceEEEecccccc-cCCceeEEee--ccccccCccCCCCCeeeehhhhCCeEEecCCe------eEEEE
Confidence            4666666654   67777775543 1111122100  011222222221   23344555566666653      68999


Q ss_pred             EeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccc
Q 047036          338 LDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQG  415 (634)
Q Consensus       338 WDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g  415 (634)
                      ||+++.++++..-..++.   ++.+.+++.    . .|++++.|..||+||++|.|...  +.|.....|+.+       
T Consensus      1192 WDa~~E~~~~diP~~s~t---~vTaLS~~~----~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~------- 1256 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPYGSST---LVTALSADL----V-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV------- 1256 (1387)
T ss_pred             EecccceeEeecccCCCc---cceeecccc----c-CCceEEEeecCCceEEeecccCCccccceeecccCCc-------
Confidence            999999999987666553   456788762    2 26899999999999999999753  345555555543       


Q ss_pred             cccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc---cccCC---CCCeEEEEECCCCCEEEEEcCCcEE
Q 047036          416 HQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT---AFPGL---GSPITHVDVTYDGKWILGTTDTYLI  487 (634)
Q Consensus       416 ~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt---~L~GH---~d~ItsVdfSpDGk~LlSS~D~tIr  487 (634)
                            .++.-+.+-+.|  .|++||.||.|++||++..  .+.   ++..|   |+..+++.++++...|||+.-+.|+
T Consensus      1257 ------~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1257 ------EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred             ------ccceeEEeecCCCcceeeeccCCeEEEEecccC--cccccceeeeccccCccceeeeeccCCCeeeecCcceEE
Confidence                  012333445555  6999999999999998752  222   22233   4569999999999999993339999


Q ss_pred             EEEcccccCCCCeeeeecC---CCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          488 LICTLFSDKDGKTKTGFSG---RMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~g---h~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      ||++.     |+.+..|.-   -++.++..+-              .+.|+|-+-          ...+++.|.+|.|+.
T Consensus      1329 Iy~~~-----G~~l~~~k~n~~F~~q~~gs~s--------------cL~FHP~~~----------llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1329 IYSLS-----GEQLNIIKYNPGFMGQRIGSVS--------------CLAFHPHRL----------LLAAGSADSTVSIYS 1379 (1387)
T ss_pred             EEecC-----hhhhcccccCcccccCcCCCcc--------------eeeecchhH----------hhhhccCCceEEEee
Confidence            99974     665554442   2233333222              345555521          233446788888886


Q ss_pred             Ch
Q 047036          565 FQ  566 (634)
Q Consensus       565 l~  566 (634)
                      -+
T Consensus      1380 ~~ 1381 (1387)
T KOG1517|consen 1380 CE 1381 (1387)
T ss_pred             cC
Confidence            55

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1.4e-10  Score=117.56  Aligned_cols=164  Identities=19%  Similarity=0.292  Sum_probs=107.6

Q ss_pred             ceeeEEeCCcc-eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          308 KKALLMRGETN-MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       308 ~~~mL~~~D~~-mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      .++|+.++..+ +|+++ .|      +.|+.||+|+|++.++|+||++.|. +|+.=+.         ..+|+||+.|+|
T Consensus       117 INam~ldP~enSi~~Ag-GD------~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~---------~~qilsG~EDGt  179 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAG-GD------GVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNA---------NGQILSGAEDGT  179 (325)
T ss_pred             cceeEeccCCCcEEEec-CC------eEEEEEEecCCEEEEEEcCCcceee-eeeeccc---------CcceeecCCCcc
Confidence            46788885444 55555 43      6999999999999999999999875 4432222         358999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      +|+||.+++++ |+.+.                                          .|+-..     ..=|.-+.+|
T Consensus       180 vRvWd~kt~k~-v~~ie------------------------------------------~yk~~~-----~lRp~~g~wi  211 (325)
T KOG0649|consen  180 VRVWDTKTQKH-VSMIE------------------------------------------PYKNPN-----LLRPDWGKWI  211 (325)
T ss_pred             EEEEeccccce-eEEec------------------------------------------cccChh-----hcCcccCcee
Confidence            99999998764 44442                                          233111     1112345678


Q ss_pred             EEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCC
Q 047036          467 THVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENG  546 (634)
Q Consensus       467 tsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g  546 (634)
                      -+|+.+-|  ||+++--..+-||.++.    -++.+.|-               -|.+++.    +     .|-      
T Consensus       212 gala~~ed--WlvCGgGp~lslwhLrs----se~t~vfp---------------ipa~v~~----v-----~F~------  255 (325)
T KOG0649|consen  212 GALAVNED--WLVCGGGPKLSLWHLRS----SESTCVFP---------------IPARVHL----V-----DFV------  255 (325)
T ss_pred             EEEeccCc--eEEecCCCceeEEeccC----CCceEEEe---------------cccceeE----e-----eee------
Confidence            88887766  99998778889999762    23322221               1222221    2     232      


Q ss_pred             CCceEEEEEcCCeEEEEeChhhhcccc
Q 047036          547 KQERHLVATVGKFSVIWDFQQVKNSAH  573 (634)
Q Consensus       547 ~~E~~IvtStg~~viiWdl~~v~~~~~  573 (634)
                       +...++++.|+.|-.|.+..|++.+.
T Consensus       256 -~d~vl~~G~g~~v~~~~l~Gvl~a~i  281 (325)
T KOG0649|consen  256 -DDCVLIGGEGNHVQSYTLNGVLQANI  281 (325)
T ss_pred             -cceEEEeccccceeeeeeccEEEEec
Confidence             12345556788999999988887554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=1.5e-10  Score=124.71  Aligned_cols=191  Identities=14%  Similarity=0.187  Sum_probs=125.7

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcE---EEEE------------------eccCCCcceeEEEEecCCCCCCC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKI---VTEW------------------KFEKDGTDITMRDITNDTKSSQL  372 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~---V~~l------------------kgH~~~V~I~vvsfsPd~K~~q~  372 (634)
                      .+-+|++..|..+      ..|.+||+.---.   .-+|                  .||++.|. .+ +++..  +   
T Consensus       189 ~~~gNyvAiGtmd------p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl-~L-s~n~~--~---  255 (463)
T KOG0270|consen  189 GGAGNYVAIGTMD------PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL-AL-SWNRN--F---  255 (463)
T ss_pred             CCCcceEEEeccC------ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH-HH-Hhccc--c---
Confidence            3456788888886      4899999742110   1112                  37988762 32 44443  1   


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecc
Q 047036          373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKT  450 (634)
Q Consensus       373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~  450 (634)
                        .+.|||||.|+||++||+.++++ .+++..|+.               +++++.+.+..  .|++||.|++++|+|.+
T Consensus       256 --~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k---------------~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  256 --RNVLASGSADKTVKLWDVDTGKP-KSSITHHGK---------------KVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             --ceeEEecCCCceEEEEEcCCCCc-ceehhhcCC---------------ceeEEEecCCCceEEEeccccceEEeeecc
Confidence              36999999999999999999765 466654433               46788887764  79999999999999976


Q ss_pred             ccccccccccCCCCCeEEEEECCCCCE--EEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc
Q 047036          451 SMRQAKTAFPGLGSPITHVDVTYDGKW--ILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA  528 (634)
Q Consensus       451 t~r~akt~L~GH~d~ItsVdfSpDGk~--LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~  528 (634)
                      ...++-.... ....|-.|++.|-...  ++++.|++|+-+|+|   ..|+++-....|-+..                 
T Consensus       318 ~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---~~~~~vwt~~AHd~~I-----------------  376 (463)
T KOG0270|consen  318 DPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---NPGKPVWTLKAHDDEI-----------------  376 (463)
T ss_pred             CccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC---CCCCceeEEEeccCCc-----------------
Confidence            3211211121 2346888888876643  334889999999998   4667666666665311                 


Q ss_pred             CCCcccccccccccccCCCCceEEE-EEcCCeEEEEeChh
Q 047036          529 GTDNKIHGGHFSWVTENGKQERHLV-ATVGKFSVIWDFQQ  567 (634)
Q Consensus       529 g~~i~Ft~a~Fs~~t~~g~~E~~Iv-tStg~~viiWdl~~  567 (634)
                       ..+.+.+.     +     ..+++ +|++++|.+|+|.-
T Consensus       377 -Sgl~~n~~-----~-----p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  377 -SGLSVNIQ-----T-----PGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             -ceEEecCC-----C-----CcceeeccccceEEEEeecC
Confidence             12332222     1     12444 48999999999973

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=1.6e-10  Score=127.53  Aligned_cols=166  Identities=18%  Similarity=0.276  Sum_probs=121.5

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      +.+|...+.|++.++..       .||..+|+.|+.++.|+.....+  .++.++|.        ..+|++|..+++|-.
T Consensus       139 m~y~~~scDly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~l--N~v~in~~--------hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGEL--NVVSINEE--------HGLLACGTEDGVVEF  201 (703)
T ss_pred             ccccCCCccEEEeecCc-------ceEEEEccccccccccccccccc--eeeeecCc--------cceEEecccCceEEE
Confidence            45677888888888774       49999999999999999988876  47799987        579999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccc-cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFS-RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~-~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It  467 (634)
                      ||+|.+.. |.+|...++ |..    |.+. ....++++.|+.+| .+|+|...|.|.|||+++.+.....=.+..-||.
T Consensus       202 wDpR~ksr-v~~l~~~~~-v~s----~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~  275 (703)
T KOG2321|consen  202 WDPRDKSR-VGTLDAASS-VNS----HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK  275 (703)
T ss_pred             ecchhhhh-heeeecccc-cCC----CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence            99998753 455542222 211    1111 23347999999999 7999999999999998763211111224457899


Q ss_pred             EEEECCC--CCEEEEEcCCcEEEEEcccccCCCCeee
Q 047036          468 HVDVTYD--GKWILGTTDTYLILICTLFSDKDGKTKT  502 (634)
Q Consensus       468 sVdfSpD--Gk~LlSS~D~tIrLWD~~~~~~~G~~~~  502 (634)
                      .|+|-+.  +..|+|.....|+|||-.    +|+...
T Consensus       276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~~----~Gk~~a  308 (703)
T KOG2321|consen  276 KLDWQDTDQQNKVVSMDKRILKIWDEC----TGKPMA  308 (703)
T ss_pred             eecccccCCCceEEecchHHhhhcccc----cCCcee
Confidence            9999766  445555556789999953    566443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.19  E-value=4.8e-10  Score=122.07  Aligned_cols=197  Identities=16%  Similarity=0.122  Sum_probs=134.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|+|||+..-.+.+.+++|+..|  ..|.+...        .++||+++.-+-|.+-.+.++.. ..++. |.+     
T Consensus       101 ~~Vkiwdl~~kl~hr~lkdh~stv--t~v~YN~~--------DeyiAsvs~gGdiiih~~~t~~~-tt~f~-~~s-----  163 (673)
T KOG4378|consen  101 GCVKIWDLRAKLIHRFLKDHQSTV--TYVDYNNT--------DEYIASVSDGGDIIIHGTKTKQK-TTTFT-IDS-----  163 (673)
T ss_pred             ceeeehhhHHHHHhhhccCCccee--EEEEecCC--------cceeEEeccCCcEEEEecccCcc-cccee-cCC-----
Confidence            799999999777888899999865  34466554        58999999999999999988643 23332 221     


Q ss_pred             ccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEE-EE-EcCCcEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWI-LG-TTDTYLIL  488 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~L-lS-S~D~tIrL  488 (634)
                              +-.+.-+-+++..  .|.++|.+|+|.|||+.+++.....+..|..|-.+|||||-..-| |+ ++|+.|.|
T Consensus       164 --------gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  164 --------GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             --------CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence                    1112334556554  689999999999999998653334567899999999999987655 55 99999999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      +|+.-+    +             -..   +|..+        .-|+.-.|..+   |   .++++ +..+-||-+|+..
T Consensus       236 yD~~s~----~-------------s~~---~l~y~--------~Plstvaf~~~---G---~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  236 YDIRSQ----A-------------STD---RLTYS--------HPLSTVAFSEC---G---TYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             eecccc----c-------------ccc---eeeec--------CCcceeeecCC---c---eEEEeecCCceEEEEeccc
Confidence            997520    0             001   11222        22333344332   4   56666 5577899999975


Q ss_pred             hhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          568 VKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                      .++--               -.|-.|+.+|..+.|.
T Consensus       282 ~k~Pv---------------~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  282 TKAPV---------------AVRSAHDASVTRVAFQ  302 (673)
T ss_pred             CCCCc---------------eEeeecccceeEEEee
Confidence            44321               2466677778877773

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=2e-10  Score=122.90  Aligned_cols=171  Identities=12%  Similarity=0.168  Sum_probs=127.7

Q ss_pred             ccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          304 NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       304 ~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      .|.-.+++.++++++.|.+++.|      +++|+|+...-..+-+...|...|.  -+.|+||        |..|++-+.
T Consensus       143 ~~g~~k~vaf~~~gs~latgg~d------g~lRv~~~Ps~~t~l~e~~~~~eV~--DL~FS~d--------gk~lasig~  206 (398)
T KOG0771|consen  143 DFGQQKVVAFNGDGSKLATGGTD------GTLRVWEWPSMLTILEEIAHHAEVK--DLDFSPD--------GKFLASIGA  206 (398)
T ss_pred             hcCcceEEEEcCCCCEeeecccc------ceEEEEecCcchhhhhhHhhcCccc--cceeCCC--------CcEEEEecC
Confidence            34455788888998888888886      7999999777777778888888775  5699999        567999999


Q ss_pred             CCeEEEEEcCCCCceEEecc----------------------------cCCCCc-----ccccccc-----cc-ccCcce
Q 047036          384 DNRLCQWDMRDRSGIVQNMV----------------------------KGDSPV-----LHWTQGH-----QF-SRGTNF  424 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~----------------------------gh~s~V-----~~~~~g~-----~y-~~~~~f  424 (634)
                      | ..++||++++.+ ++.+.                            .-...|     ..|..+.     +. ....-+
T Consensus       207 d-~~~VW~~~~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si  284 (398)
T KOG0771|consen  207 D-SARVWSVNTGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI  284 (398)
T ss_pred             C-ceEEEEeccCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence            9 999999998722 11111                            000111     1111110     00 113367


Q ss_pred             EEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          425 QCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       425 ssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +|++.+++| ++|.|+.||.|-+++...++.....=..|...|++|.|+||-+++++ |.|+.++|.-+.
T Consensus       285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            999999999 79999999999999998885333333489999999999999999999 999999998765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.19  E-value=5e-10  Score=125.79  Aligned_cols=235  Identities=13%  Similarity=0.141  Sum_probs=145.7

Q ss_pred             ccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEE---EEEeccCCCcceeEEEEec-CCC--CCC-CCC
Q 047036          302 GSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIV---TEWKFEKDGTDITMRDITN-DTK--SSQ-LDP  374 (634)
Q Consensus       302 g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V---~~lkgH~~~V~I~vvsfsP-d~K--~~q-~~~  374 (634)
                      .-+.-|+.+-+...+.+--|++-.++     ..||+||+..-+.+   ..+--|...|  +-+..-| +-+  -++ +. 
T Consensus       320 ~~a~fPD~IA~~Fdet~~klscVYnd-----hSlYvWDvrD~~kvgk~~s~lyHS~ci--W~Ve~~p~nv~~~~~aclp-  391 (1080)
T KOG1408|consen  320 SPAIFPDAIACQFDETTDKLSCVYND-----HSLYVWDVRDVNKVGKCSSMLYHSACI--WDVENLPCNVHSPTAACLP-  391 (1080)
T ss_pred             CcccCCceeEEEecCCCceEEEEEcC-----ceEEEEeccccccccceeeeeecccee--eeeccccccccCcccccCC-
Confidence            44455777555445455455555543     78999998763332   2344576643  2222222 111  112 22 


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCC--ce-----E--------------EecccCCCCccccccccccccCcceEEEEECCCC
Q 047036          375 SESTFLGLDDNRLCQWDMRDRS--GI-----V--------------QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG  433 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~--~~-----V--------------q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG  433 (634)
                      ..-++++|+|+|||+||+....  .+     .              |.+.....++.+-+....|-..+-|.|++.+|+|
T Consensus       392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g  471 (1080)
T KOG1408|consen  392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG  471 (1080)
T ss_pred             ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence            3578999999999999998521  10     0              0010111122111112234457789999999999


Q ss_pred             -eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCC---CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          434 -SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD---GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       434 -~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD---Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                       +||+|-.-|.||+||+...+ ....+.+|...|.+|.+|.-   -+.||| +.|.-|.++|+.   ....+++++.+|.
T Consensus       472 qhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HS  547 (1080)
T KOG1408|consen  472 QHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHS  547 (1080)
T ss_pred             ceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccc
Confidence             89999999999999998874 66788999999999999953   255667 899999999986   3555566676665


Q ss_pred             CCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccccc
Q 047036          509 GNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHE  574 (634)
Q Consensus       509 ~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~  574 (634)
                      ...                  ..++|-.+        |-+-+.|..++|+.++.=-+++.-.|.+-
T Consensus       548 ssI------------------TsvKFa~~--------gln~~MiscGADksimFr~~qk~~~g~~f  587 (1080)
T KOG1408|consen  548 SSI------------------TSVKFACN--------GLNRKMISCGADKSIMFRVNQKASSGRLF  587 (1080)
T ss_pred             cce------------------eEEEEeec--------CCceEEEeccCchhhheehhccccCceec
Confidence            421                  23555544        33346777778887665444443334443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.18  E-value=5.1e-10  Score=124.67  Aligned_cols=193  Identities=14%  Similarity=0.134  Sum_probs=124.8

Q ss_pred             CcEEEEeCCCCcE------EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe--ccc
Q 047036          333 PGVQQLDIETGKI------VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN--MVK  404 (634)
Q Consensus       333 ~TIrlWDleTGK~------V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~--l~g  404 (634)
                      +.|.+.|.+.-+.      +..|..|.+.| +-+ .+.| +       ..+|++++.|.||++||+...+. +..  +. 
T Consensus        74 G~i~l~dt~~~~fr~ee~~lk~~~aH~nAi-fDl-~wap-g-------e~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~-  141 (720)
T KOG0321|consen   74 GGIILFDTKSIVFRLEERQLKKPLAHKNAI-FDL-KWAP-G-------ESLLVSASGDSTIRPWDVKTSRL-VGGRLNL-  141 (720)
T ss_pred             Cceeeecchhhhcchhhhhhccccccccee-Eee-ccCC-C-------ceeEEEccCCceeeeeeecccee-ecceeec-
Confidence            7888988764332      46788999875 233 5666 2       36899999999999999987653 222  33 


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccc----------------c-------ccc--
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMR----------------Q-------AKT--  457 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r----------------~-------akt--  457 (634)
                                ||++.    +-++||.+..  -+++|+.||.|.|||.+-..                .       .+.  
T Consensus       142 ----------GH~~S----vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  142 ----------GHTGS----VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             ----------ccccc----cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence                      44443    3566777765  68999999999999975210                0       000  


Q ss_pred             -cccCCCCCeEE---EEECCCCCEEEE-Ec-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          458 -AFPGLGSPITH---VDVTYDGKWILG-TT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       458 -~L~GH~d~Its---VdfSpDGk~LlS-S~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                       .=..|+..|.+   |-+..|...||+ +. |+.|++||++    +..+.  |.       ..|+...-.|-+.....+-
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR----k~~~~--~r-------~ep~~~~~~~t~skrs~G~  274 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR----KNYTA--YR-------QEPRGSDKYPTHSKRSVGQ  274 (720)
T ss_pred             cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec----ccccc--cc-------cCCCcccCccCcccceeee
Confidence             11256778888   888899999998 65 9999999987    22211  11       2222222223332111133


Q ss_pred             cccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccc
Q 047036          532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSA  572 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~  572 (634)
                      .+|+-+.|      |  .+..+.++|+.|+.||+.....+-
T Consensus       275 ~nL~lDss------G--t~L~AsCtD~sIy~ynm~s~s~sP  307 (720)
T KOG0321|consen  275 VNLILDSS------G--TYLFASCTDNSIYFYNMRSLSISP  307 (720)
T ss_pred             EEEEecCC------C--CeEEEEecCCcEEEEeccccCcCc
Confidence            66776654      3  355666889999999997554443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.17  E-value=3.4e-10  Score=126.98  Aligned_cols=220  Identities=17%  Similarity=0.201  Sum_probs=133.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCC---
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSP---  408 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~---  408 (634)
                      ..|-+||..+-.++.++.||...|+  ++.+-|++++.     ..++||+.|++|.+|-+|... ..++++.+|...   
T Consensus        34 ~~Iav~dp~k~~i~t~l~GH~a~Vn--C~~~l~~s~~~-----a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c  106 (764)
T KOG1063|consen   34 PAIAVADPEKILIVTTLDGHVARVN--CVHWLPTSEIV-----AEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC  106 (764)
T ss_pred             ceEEEeCcccceeEEeccCCccceE--EEEEccccccc-----ceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE
Confidence            5799999998888899999999874  66999986532     389999999999999999432 234556554432   


Q ss_pred             ----------------cccccc-cccc--ccCcce-------EEEEECC-CC--eEEEEECCCcEEEEeccccc-ccccc
Q 047036          409 ----------------VLHWTQ-GHQF--SRGTNF-------QCFASTG-DG--SIVVGSLDGKIRLYSKTSMR-QAKTA  458 (634)
Q Consensus       409 ----------------V~~~~~-g~~y--~~~~~f-------ssva~s~-dG--~IASGS~DGtIRLWD~~t~r-~akt~  458 (634)
                                      |..|.. ....  ....+|       .|++..+ .+  .+|.|+.+..|.||--...+ +.+..
T Consensus       107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e  186 (764)
T KOG1063|consen  107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE  186 (764)
T ss_pred             EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence                            222322 1000  000001       2333333 33  46888888888888754321 13457


Q ss_pred             ccCCCCCeEEEEECCCCC---EEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCce-----eEeecCCCccccC
Q 047036          459 FPGLGSPITHVDVTYDGK---WILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPR-----LLKLTPLDSHLAG  529 (634)
Q Consensus       459 L~GH~d~ItsVdfSpDGk---~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr-----~L~L~Pe~~~~~g  529 (634)
                      |.||+|+|.+|+|..-|.   +||| |.|.|||||.+.+.+..++....+.-....+.|.--     .++++-+.. .+|
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal-l~G  265 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL-LMG  265 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh-hcC
Confidence            889999999999998776   6667 889999999998765333322222222211122211     122222221 223


Q ss_pred             CCcccccccccccccCCCCceEEEEEcCCeEEEEeC
Q 047036          530 TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF  565 (634)
Q Consensus       530 ~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl  565 (634)
                      .+---..-.|.+   .+  ...+.+|.|+..+||-=
T Consensus       266 HeDWV~sv~W~p---~~--~~LLSASaDksmiiW~p  296 (764)
T KOG1063|consen  266 HEDWVYSVWWHP---EG--LDLLSASADKSMIIWKP  296 (764)
T ss_pred             cccceEEEEEcc---ch--hhheecccCcceEEEec
Confidence            321112223332   12  46778899999999953

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.16  E-value=1e-09  Score=117.36  Aligned_cols=142  Identities=11%  Similarity=0.127  Sum_probs=111.5

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCc---------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGK---------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK---------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .|.+++.|      +.||+|-++++.         .+..|..|...|+  ++.|+|+        |++||||++++.|.+
T Consensus        28 ~laT~G~D------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN--~vRf~p~--------gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   28 KLATAGGD------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN--VVRFSPD--------GELLASGGDGGEVFL   91 (434)
T ss_pred             ceecccCc------cceeeeeeeecCCCCCceeEEEeecccCCcceeE--EEEEcCC--------cCeeeecCCCceEEE
Confidence            67777776      579999887642         3456889999875  7799998        899999999999999


Q ss_pred             EEcC--------C-----CC--ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036          390 WDMR--------D-----RS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       390 WD~R--------~-----~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r  453 (634)
                      |-..        +     +.  .+.+.+.+|..               .+.-+|.++++ ++++||.|+++++||+..+ 
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~---------------diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-  155 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD---------------DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-  155 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEeccccc---------------chhhhhccCCCceeeeeeccceEEEEEeccc-
Confidence            9765        1     10  11223333333               23345778888 7999999999999999988 


Q ss_pred             cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          454 QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       454 ~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +....+.+|...|.++++-|-++||++ ++|...+.+.+.
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            478889999999999999999999999 999866666654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=2.1e-09  Score=117.72  Aligned_cols=126  Identities=16%  Similarity=0.201  Sum_probs=81.7

Q ss_pred             CcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEE--EcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQW--DMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklW--D~R~~~~~Vq~l~gh~s  407 (634)
                      .+|++||+.+|+  ++..+.+|..     ..+|+||        |+.|+.++ .++.+.+|  |+.++.  +..+..+. 
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~~~-----~~~wSPD--------G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~-  291 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGHNG-----APAFSPD--------GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGA-  291 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCccC-----ceeECCC--------CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCC-
Confidence            579999999986  4666777753     2489999        56676654 67765555  665443  23443221 


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                    ....+.+++||| +|+.++ .+|.++||++.........+ ++..  .+++|||||++|+. +.+ 
T Consensus       292 --------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-  353 (429)
T PRK01742        292 --------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-  353 (429)
T ss_pred             --------------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-
Confidence                          123567889999 576555 67899999864311122333 3433  46889999999988 554 


Q ss_pred             cEEEEEcc
Q 047036          485 YLILICTL  492 (634)
Q Consensus       485 tIrLWD~~  492 (634)
                      .|.+||+.
T Consensus       354 ~i~~~Dl~  361 (429)
T PRK01742        354 NVVKQDLT  361 (429)
T ss_pred             CEEEEECC
Confidence            56668864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.14  E-value=1.6e-09  Score=118.14  Aligned_cols=198  Identities=17%  Similarity=0.154  Sum_probs=131.4

Q ss_pred             CCcEEEEeCCCCc-----EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          332 APGVQQLDIETGK-----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       332 ~~TIrlWDleTGK-----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                      |+.+++|--. |+     +++.+.|...   .||.+.+ .        ..++++|+..++|+|||+|.+ .+.+.|.+|.
T Consensus        56 dk~~~~~~K~-g~~~~Vp~~~k~~gd~~---~Cv~~~s-~--------S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~  121 (673)
T KOG4378|consen   56 DKVMRIKEKD-GKTPEVPRVRKLTGDNA---FCVACAS-Q--------SLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQ  121 (673)
T ss_pred             ceeEEEeccc-CCCCccceeeccccchH---HHHhhhh-c--------ceeeeccCcCceeeehhhHHH-HHhhhccCCc
Confidence            3789999643 44     4556666643   2443333 2        368999999999999999954 3456777776


Q ss_pred             CCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEE--Ec
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILG--TT  482 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlS--S~  482 (634)
                      +.               ++|+..+- |-|||++|.-|.|-|-.+.++. ..++|. +-++.|+.|.+||--+.||+  +.
T Consensus       122 st---------------vt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd  185 (673)
T KOG4378|consen  122 ST---------------VTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASD  185 (673)
T ss_pred             ce---------------eEEEEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeecccccceeeEeecc
Confidence            54               45666654 4599999999999999998852 335554 34677889999999999997  78


Q ss_pred             CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEE
Q 047036          483 DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSV  561 (634)
Q Consensus       483 D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vi  561 (634)
                      +++|.|||+.     |.-. .|  |..            -.|.+.+ ..++|+|.          +|..||+ +-|+.|+
T Consensus       186 ~G~VtlwDv~-----g~sp-~~--~~~------------~~HsAP~-~gicfsps----------ne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  186 KGAVTLWDVQ-----GMSP-IF--HAS------------EAHSAPC-RGICFSPS----------NEALLVSVGYDKKIN  234 (673)
T ss_pred             CCeEEEEecc-----CCCc-cc--chh------------hhccCCc-CcceecCC----------ccceEEEecccceEE
Confidence            9999999985     2210 00  010            1111111 24666665          3677777 7899999


Q ss_pred             EEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          562 IWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       562 iWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                      ++|...            +.+.+|..|.-+.     ..+.||.+-+
T Consensus       235 ~yD~~s------------~~s~~~l~y~~Pl-----stvaf~~~G~  263 (673)
T KOG4378|consen  235 IYDIRS------------QASTDRLTYSHPL-----STVAFSECGT  263 (673)
T ss_pred             Eeeccc------------ccccceeeecCCc-----ceeeecCCce
Confidence            999862            1234455555443     4566766666

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.13  E-value=1.7e-09  Score=117.00  Aligned_cols=202  Identities=12%  Similarity=0.099  Sum_probs=132.2

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-Cc---EEEEEeccCCCcceeEEEEecCCCCCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GK---IVTEWKFEKDGTDITMRDITNDTKSSQLDPSE  376 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK---~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~  376 (634)
                      .+.+|.|..      ..+|+++|.. .     ++|-+||+.+ ++   -+.-|..|...|  +.+.|+|..       -.
T Consensus       190 t~l~fHPt~------~~~lva~GdK-~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~V--s~l~F~P~n-------~s  248 (498)
T KOG4328|consen  190 TSLAFHPTE------NRKLVAVGDK-G-----GQVGLWNFGTQEKDKDGVYLFTPHSGPV--SGLKFSPAN-------TS  248 (498)
T ss_pred             EEEEecccC------cceEEEEccC-C-----CcEEEEecCCCCCccCceEEeccCCccc--cceEecCCC-------hh
Confidence            456666654      2345555543 3     8999999942 22   344577888766  456899872       36


Q ss_pred             EEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEECCCcEEEEecccccc
Q 047036          377 STFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMRQ  454 (634)
Q Consensus       377 ~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r~  454 (634)
                      ++++.|.||+|++-|+.... ..|.++.  .             ...-|+.+-++.. +.++.|..=|...+||+++...
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~--~-------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s  313 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLD--T-------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS  313 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcC--c-------------cceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence            89999999999999997532 1111110  0             1123555666554 4677777777999999877543


Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCc
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDN  532 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i  532 (634)
                      ....+.-|.-.|++|+|+|--.|+++  |.|.|++|||++.              +.. |+.| .|... +|      ..
T Consensus       314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~--------------l~~-K~sp-~lst~-~H------rr  370 (498)
T KOG4328|consen  314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ--------------LRG-KASP-FLSTL-PH------RR  370 (498)
T ss_pred             cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh--------------hcC-CCCc-ceecc-cc------cc
Confidence            33456678889999999999988765  7899999999872              211 1223 22211 12      12


Q ss_pred             ccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          533 KIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       533 ~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      .-..|+|||..  |   +.++|+.|.+|.|||..
T Consensus       371 sV~sAyFSPs~--g---tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  371 SVNSAYFSPSG--G---TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eeeeeEEcCCC--C---ceEeeccCCceEEeecc
Confidence            33467777622  3   56666899999999985

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3e-09  Score=110.80  Aligned_cols=225  Identities=13%  Similarity=0.075  Sum_probs=137.9

Q ss_pred             eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc---eEEecccCCCCccccccccccccCcceEE
Q 047036          350 KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG---IVQNMVKGDSPVLHWTQGHQFSRGTNFQC  426 (634)
Q Consensus       350 kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~---~Vq~l~gh~s~V~~~~~g~~y~~~~~fss  426 (634)
                      .+|.+-|  ..+.|.+-        |+.+|+||.|.+|++||.+....   +......|.+.|               -.
T Consensus        10 s~h~Dli--hdVs~D~~--------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si---------------~r   64 (361)
T KOG2445|consen   10 SGHKDLI--HDVSFDFY--------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSI---------------WR   64 (361)
T ss_pred             cCCccee--eeeeeccc--------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcE---------------EE
Confidence            3677754  45577775        78999999999999999865421   222333444432               22


Q ss_pred             EEE-CC-CC-eEEEEECCCcEEEEeccc--cc------cccccccCCCCCeEEEEECCC--CCEEEE-EcCCcEEEEEcc
Q 047036          427 FAS-TG-DG-SIVVGSLDGKIRLYSKTS--MR------QAKTAFPGLGSPITHVDVTYD--GKWILG-TTDTYLILICTL  492 (634)
Q Consensus       427 va~-s~-dG-~IASGS~DGtIRLWD~~t--~r------~akt~L~GH~d~ItsVdfSpD--Gk~LlS-S~D~tIrLWD~~  492 (634)
                      |.. +| =| -||++|.|++|+||.-..  .+      ...++|..-...|+.|.|.|-  |-.||+ +.|++|||+++.
T Consensus        65 V~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~  144 (361)
T KOG2445|consen   65 VVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP  144 (361)
T ss_pred             EEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence            222 33 36 589999999999998521  10      123456666788999999985  667888 999999999864


Q ss_pred             cccCCCCeee-eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCC------eEEEEeC
Q 047036          493 FSDKDGKTKT-GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGK------FSVIWDF  565 (634)
Q Consensus       493 ~~~~~G~~~~-gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~------~viiWdl  565 (634)
                      -   -+.+.+ .+..-+.+.       ...|.-.+..-..++..|.+|.        +..|+.+.+.      -++||-+
T Consensus       145 d---p~nLs~W~Lq~Ei~~~-------~~pp~~~~~~~~CvsWn~sr~~--------~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  145 D---PMNLSQWTLQHEIQNV-------IDPPGKNKQPCFCVSWNPSRMH--------EPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             C---ccccccchhhhhhhhc-------cCCcccccCcceEEeecccccc--------CceEEEEcccCCccccceEEEEe
Confidence            1   111110 111111100       0011111110112444455543        5688887777      8899976


Q ss_pred             hhhhcccccccccccCCccee-eEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCceeeeeccCCC
Q 047036          566 QQVKNSAHECYRNQQGLKSCY-CYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR  634 (634)
Q Consensus       566 ~~v~~~~~~~y~~~~~~~~~~-~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~~~  634 (634)
                      ..-.+             +|. -=.++.+...|.+..| ++|-  |-+ -.-|-||+.+-|.-+++..+|
T Consensus       207 ~e~~r-------------Kw~kva~L~d~~dpI~di~w-APn~--Gr~-y~~lAvA~kDgv~I~~v~~~~  259 (361)
T KOG2445|consen  207 NENGR-------------KWLKVAELPDHTDPIRDISW-APNI--GRS-YHLLAVATKDGVRIFKVKVAR  259 (361)
T ss_pred             cCCcc-------------eeeeehhcCCCCCcceeeee-cccc--CCc-eeeEEEeecCcEEEEEEeecc
Confidence            53221             111 1246788999999999 8887  432 356778998888888876543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=9.2e-09  Score=115.45  Aligned_cols=206  Identities=17%  Similarity=0.167  Sum_probs=137.8

Q ss_pred             EEEeee--CCCeEEEe--cCeeeEEEccCCceecceeEEEecCCC--CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          258 SLTLGA--LDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGS--SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       258 ~LavG~--~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~--~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ..++||  .+++..+.  .-.|.+|....+=.    +...+.++.  ++.+.+|.         ++..|++++.+     
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~---------e~~RLFS~g~s-----   89 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWA---------EGGRLFSSGLS-----   89 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEc---------cCCeEEeecCC-----
Confidence            455566  44443332  35788887655321    122334431  22333333         55667777765     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|.-||+.+++.+..+..-.+.  |+..+++|.        +..++.|++|+.++..+...+.  ++--     .++ 
T Consensus        90 -g~i~EwDl~~lk~~~~~d~~gg~--IWsiai~p~--------~~~l~IgcddGvl~~~s~~p~~--I~~~-----r~l-  150 (691)
T KOG2048|consen   90 -GSITEWDLHTLKQKYNIDSNGGA--IWSIAINPE--------NTILAIGCDDGVLYDFSIGPDK--ITYK-----RSL-  150 (691)
T ss_pred             -ceEEEEecccCceeEEecCCCcc--eeEEEeCCc--------cceEEeecCCceEEEEecCCce--EEEE-----eec-
Confidence             79999999999999998877664  577799998        5789999999988888775532  2110     011 


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc---ccccCCC----CCeEEEEECCCCCEEEEEcC
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK---TAFPGLG----SPITHVDVTYDGKWILGTTD  483 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak---t~L~GH~----d~ItsVdfSpDGk~LlSS~D  483 (634)
                         .   ..+.++.|+.+.++| +||+||.||.||+||+..+....   ..+.+.+    --|++|.|=.||..+..-.-
T Consensus       151 ---~---rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~  224 (691)
T KOG2048|consen  151 ---M---RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA  224 (691)
T ss_pred             ---c---cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Confidence               1   123467899999999 59999999999999998764222   1233333    24789999999875544667


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCCCC
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRMGN  510 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~~~  510 (634)
                      ++|.+||..    .|.+++.|.-|.++
T Consensus       225 G~V~FWd~~----~gTLiqS~~~h~ad  247 (691)
T KOG2048|consen  225 GTVTFWDSI----FGTLIQSHSCHDAD  247 (691)
T ss_pred             ceEEEEccc----Ccchhhhhhhhhcc
Confidence            999999975    57777777766653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=1.2e-08  Score=114.56  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=116.7

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcE-EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKI-VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~-V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      ...|.++-.++.|..+-.+      ++|-+|++..+=+ ...+.||.+. .|..++|++         +..|+|.+-+++
T Consensus        28 I~slA~s~kS~~lAvsRt~------g~IEiwN~~~~w~~~~vi~g~~dr-sIE~L~W~e---------~~RLFS~g~sg~   91 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTD------GNIEIWNLSNNWFLEPVIHGPEDR-SIESLAWAE---------GGRLFSSGLSGS   91 (691)
T ss_pred             eEEEEEeccCCceeeeccC------CcEEEEccCCCceeeEEEecCCCC-ceeeEEEcc---------CCeEEeecCCce
Confidence            3466777777778887775      6899999998754 4568888887 367779995         468999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccccCCCC
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGS  464 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d  464 (634)
                      |.-||+.+.+.. ..+..               ....+.++|.+|.+ .+++|+.||.+.+++..... .-++.|.--..
T Consensus        92 i~EwDl~~lk~~-~~~d~---------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   92 ITEWDLHTLKQK-YNIDS---------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             EEEEecccCcee-EEecC---------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence            999999876532 23321               23346788888888 79999999977666654421 12345666678


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .|.+|+|+|+|..|++ |.|+-||+||+.
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcC
Confidence            9999999999999999 889999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=1.3e-09  Score=113.33  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=87.7

Q ss_pred             eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEE
Q 047036          358 ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVV  437 (634)
Q Consensus       358 I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IAS  437 (634)
                      |+.+.|+|.        ++.|+.+|.|++++++|+.... +.+.                |.+..++.++||.++..+++
T Consensus        16 IS~v~f~~~--------~~~LLvssWDgslrlYdv~~~~-l~~~----------------~~~~~plL~c~F~d~~~~~~   70 (323)
T KOG1036|consen   16 ISSVKFSPS--------SSDLLVSSWDGSLRLYDVPANS-LKLK----------------FKHGAPLLDCAFADESTIVT   70 (323)
T ss_pred             eeeEEEcCc--------CCcEEEEeccCcEEEEeccchh-hhhh----------------eecCCceeeeeccCCceEEE
Confidence            466799976        4677778899999999987532 2112                33455677889998889999


Q ss_pred             EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          438 GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       438 GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |+.||.||++|+.++  ....+..|..+|++|..++--..++| |-|++|++||.+
T Consensus        71 G~~dg~vr~~Dln~~--~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTG--NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             eccCceEEEEEecCC--cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            999999999999875  45677789999999999987677777 999999999976

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.08  E-value=1.5e-09  Score=121.31  Aligned_cols=215  Identities=17%  Similarity=0.203  Sum_probs=147.1

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      ...+|.|++.       .+|++.++        .+.++|+..|-.+++++||++.|.  .|+++.|        |..+||
T Consensus        16 ~d~afkPDGs-------qL~lAAg~--------rlliyD~ndG~llqtLKgHKDtVy--cVAys~d--------GkrFAS   70 (1081)
T KOG1538|consen   16 NDIAFKPDGT-------QLILAAGS--------RLLVYDTSDGTLLQPLKGHKDTVY--CVAYAKD--------GKRFAS   70 (1081)
T ss_pred             heeEECCCCc-------eEEEecCC--------EEEEEeCCCcccccccccccceEE--EEEEccC--------Cceecc
Confidence            4556777663       23444432        599999999999999999999874  5699998        679999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      |+.|+.|.+|.+...+-    |              .|+++-.+.|+.|+|-. .|||+|. ...-||.....  +...-
T Consensus        71 G~aDK~VI~W~~klEG~----L--------------kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK--~V~K~  129 (1081)
T KOG1538|consen   71 GSADKSVIIWTSKLEGI----L--------------KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQK--SVSKH  129 (1081)
T ss_pred             CCCceeEEEecccccce----e--------------eeccCCeeeEeecCchHHHhhhcch-hhccccChhhh--hHHhh
Confidence            99999999999876542    2              24555668999999977 6899987 56779996542  22222


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC--------------
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD--------------  524 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~--------------  524 (634)
                      . ....|.+.+++.||+|++- -.++||-|=+.     .|+.+-.....-|.+.|. -.++..|.-              
T Consensus       130 k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-----~gEek~~I~Rpgg~Nspi-wsi~~~p~sg~G~~di~aV~DW~  202 (1081)
T KOG1538|consen  130 K-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-----NGEEKVKIERPGGSNSPI-WSICWNPSSGEGRNDILAVADWG  202 (1081)
T ss_pred             h-hheeEEEeeecCCCcEEEEeccCceEEeecC-----CCCcceEEeCCCCCCCCc-eEEEecCCCCCCccceEEEEecc
Confidence            1 3457899999999999998 56999887753     455554455443332221 122222211              


Q ss_pred             ---------ccccC--CCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036          525 ---------SHLAG--TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS  571 (634)
Q Consensus       525 ---------~~~~g--~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~  571 (634)
                               ....|  ..+.|.|.+.+.++. |  |..+++++++.+.++--+.|.-|
T Consensus       203 qTLSFy~LsG~~Igk~r~L~FdP~CisYf~N-G--Ey~LiGGsdk~L~~fTR~GvrLG  257 (1081)
T KOG1538|consen  203 QTLSFYQLSGKQIGKDRALNFDPCCISYFTN-G--EYILLGGSDKQLSLFTRDGVRLG  257 (1081)
T ss_pred             ceeEEEEecceeecccccCCCCchhheeccC-C--cEEEEccCCCceEEEeecCeEEe
Confidence                     11112  358899999887652 3  78888888877766655555443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.06  E-value=9.1e-09  Score=101.80  Aligned_cols=126  Identities=15%  Similarity=0.236  Sum_probs=86.8

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE--EEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST--FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l--aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      .|+.++.. +..+..+.-...+ +|.-++|+|+        |+.+  +.|..++.|.+||++.  ..+..+.        
T Consensus        40 ~l~~~~~~-~~~~~~i~l~~~~-~I~~~~WsP~--------g~~favi~g~~~~~v~lyd~~~--~~i~~~~--------   99 (194)
T PF08662_consen   40 ELFYLNEK-NIPVESIELKKEG-PIHDVAWSPN--------GNEFAVIYGSMPAKVTLYDVKG--KKIFSFG--------   99 (194)
T ss_pred             EEEEEecC-CCccceeeccCCC-ceEEEEECcC--------CCEEEEEEccCCcccEEEcCcc--cEeEeec--------
Confidence            46777665 4455665543332 1345699998        4554  4466788999999973  3344442        


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec----
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT----  482 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~----  482 (634)
                               .....+++++|+| +||+|+.+   |.|++||....+ ...++. |. .++.+++||||++||+ ++    
T Consensus       100 ---------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen  100 ---------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFE-HS-DATDVEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             ---------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-Eeeccc-cC-cEEEEEEcCCCCEEEEEEeccce
Confidence                     1224578999999 78888754   679999987653 334443 44 4799999999999998 43    


Q ss_pred             --CCcEEEEEc
Q 047036          483 --DTYLILICT  491 (634)
Q Consensus       483 --D~tIrLWD~  491 (634)
                        |+.++||+.
T Consensus       168 ~~dng~~Iw~~  178 (194)
T PF08662_consen  168 RVDNGFKIWSF  178 (194)
T ss_pred             eccccEEEEEe
Confidence              899999995

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.05  E-value=1.3e-09  Score=121.27  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             CcEEEEeCCC-CcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc------eEEeccc
Q 047036          333 PGVQQLDIET-GKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG------IVQNMVK  404 (634)
Q Consensus       333 ~TIrlWDleT-GK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~------~Vq~l~g  404 (634)
                      +.|.++++.. |++-.. +.+--++..|.-..|.|-   .    .++||.|++|+.|++|-+...+.      +-..|.+
T Consensus       603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF---D----~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF---D----DERLAVATDDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             ceEEEEEcCCCCCCCcccccccccCceeeecccCCC---C----hHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence            6899999865 654322 111111112233355553   2    47999999999999999876531      1122333


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                      |               .-.++++-|.|=-  .||++|.|-||+|||+.++. .+..|.||++.|.++++||||+.||+ +
T Consensus       676 h---------------~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVc  739 (1012)
T KOG1445|consen  676 H---------------GEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVC  739 (1012)
T ss_pred             c---------------cceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeee
Confidence            3               2346777777743  79999999999999999874 77889999999999999999999999 8


Q ss_pred             cCCcEEEEEcc
Q 047036          482 TDTYLILICTL  492 (634)
Q Consensus       482 ~D~tIrLWD~~  492 (634)
                      .|++|+++..+
T Consensus       740 KDg~~rVy~Pr  750 (1012)
T KOG1445|consen  740 KDGTLRVYEPR  750 (1012)
T ss_pred             cCceEEEeCCC
Confidence            89999999865

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.05  E-value=1.4e-09  Score=112.39  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=118.0

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      .+-+++|.+      +++|+++.++       ++++.||+.|-++.-.. ..|...|+ . ++|+|+.       ...|+
T Consensus       174 tsg~WspHH------dgnqv~tt~d-------~tl~~~D~RT~~~~~sI~dAHgq~vr-d-lDfNpnk-------q~~lv  231 (370)
T KOG1007|consen  174 TSGAWSPHH------DGNQVATTSD-------STLQFWDLRTMKKNNSIEDAHGQRVR-D-LDFNPNK-------QHILV  231 (370)
T ss_pred             cccccCCCC------ccceEEEeCC-------CcEEEEEccchhhhcchhhhhcceee-e-ccCCCCc-------eEEEE
Confidence            455678864      5677777654       69999999998776655 46766663 4 4999973       35899


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccccc----
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMR----  453 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r----  453 (634)
                      ||++|+.||+||.|.-..+|+++.+|+.+|               .||-|+|-  ..|.+||.|..|-||-.....    
T Consensus       232 t~gDdgyvriWD~R~tk~pv~el~~HsHWv---------------W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q  296 (370)
T KOG1007|consen  232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWV---------------WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ  296 (370)
T ss_pred             EcCCCccEEEEeccCCCccccccCCCceEE---------------EEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence            999999999999998777899999998775               35556664  479999999999999764310    


Q ss_pred             -----------------c-------ccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEc
Q 047036          454 -----------------Q-------AKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICT  491 (634)
Q Consensus       454 -----------------~-------akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~  491 (634)
                                       +       ...++..|.+.|+++++|.---||.+  |.|+.+.|=.+
T Consensus       297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence                             0       12255679999999999998899876  88999877654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.05  E-value=8.1e-08  Score=100.64  Aligned_cols=156  Identities=8%  Similarity=0.130  Sum_probs=93.7

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-C---cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCC
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-G---KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDN  385 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-G---K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~  385 (634)
                      +.++++++.|+++...+     +.|.+||+.+ |   +.+..+.++.. .  ..++|+|+        ++.+ ++...++
T Consensus        85 i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~-~--~~~~~~p~--------g~~l~v~~~~~~  148 (330)
T PRK11028         85 ISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQIIEGLEG-C--HSANIDPD--------NRTLWVPCLKED  148 (330)
T ss_pred             EEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceeeccCCCc-c--cEeEeCCC--------CCEEEEeeCCCC
Confidence            34456666666665432     6899999964 4   34454444332 1  23489998        4455 5666789


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEeccc--cc-ccccc--
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKTS--MR-QAKTA--  458 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~t--~r-~akt~--  458 (634)
                      +|.+||+...+.+ .....+.-.+         ........++++|+| +|++++. +++|++||+..  +. .....  
T Consensus       149 ~v~v~d~~~~g~l-~~~~~~~~~~---------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        149 RIRLFTLSDDGHL-VAQEPAEVTT---------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             EEEEEEECCCCcc-cccCCCceec---------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            9999999864322 1100000000         001113467889998 6777765 99999999862  11 01112  


Q ss_pred             -ccC---CCCCeEEEEECCCCCEEEEE--cCCcEEEEEcc
Q 047036          459 -FPG---LGSPITHVDVTYDGKWILGT--TDTYLILICTL  492 (634)
Q Consensus       459 -L~G---H~d~ItsVdfSpDGk~LlSS--~D~tIrLWD~~  492 (634)
                       ++.   +.....+|.|+|||++|+++  .+++|.+|++.
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence             222   11223469999999999884  47899999975

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=9.5e-09  Score=112.68  Aligned_cols=130  Identities=15%  Similarity=0.073  Sum_probs=92.7

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCc-eEEecccCCC
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSG-IVQNMVKGDS  407 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~-~Vq~l~gh~s  407 (634)
                      +.+|++||.. |...+.+..|...|  ...+|+||        |+.|+.++.+   ..|++||++++.. .+..+.+|  
T Consensus       183 ~~~i~i~d~d-g~~~~~lt~~~~~v--~~p~wSPD--------G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~--  249 (429)
T PRK01742        183 PYEVRVADYD-GFNQFIVNRSSQPL--MSPAWSPD--------GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH--  249 (429)
T ss_pred             eEEEEEECCC-CCCceEeccCCCcc--ccceEcCC--------CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--
Confidence            4789999986 55567788887765  34599999        6678777654   4799999987642 22222211  


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEE--eccccccccccccCCCCCeEEEEECCCCCEEEE-E-
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLY--SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T-  481 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLW--D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S-  481 (634)
                                      ..+++++||| +||.++ .+|.++||  |+.++  ....+.+|...+.+++|||||++|+. + 
T Consensus       250 ----------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        250 ----------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             ----------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence                            1246889999 687764 78877766  55553  34557777778899999999999886 4 


Q ss_pred             cCCcEEEEEcc
Q 047036          482 TDTYLILICTL  492 (634)
Q Consensus       482 ~D~tIrLWD~~  492 (634)
                      .++...||++.
T Consensus       312 ~~g~~~I~~~~  322 (429)
T PRK01742        312 RSGSPQVYRMS  322 (429)
T ss_pred             CCCCceEEEEE
Confidence            46889999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.03  E-value=7.5e-09  Score=110.58  Aligned_cols=198  Identities=13%  Similarity=0.115  Sum_probs=131.4

Q ss_pred             CCcEEEeee-C-CCeEEEec---CeeeEEEccCCcee--cceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCC
Q 047036          255 GVQSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIH--NKGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLK  326 (634)
Q Consensus       255 ~~~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~--~~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d  326 (634)
                      .+.+|-+.+ + +..-+++|   .+|.||+...+|+.  .....+.|.||.- +.-+++.|.       -.|.|++++.|
T Consensus        81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-------A~NVLlsag~D  153 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-------APNVLLSAGSD  153 (472)
T ss_pred             cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-------chhhHhhccCC
Confidence            456788887 4 33444555   59999999888742  2223566777732 133444444       34667777775


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          327 DGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       327 ~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                            ++|.+||+.||+.+-+++ |.+.|  ..++|+.|        |.++++.+.|+.||+||+|++. +|+.-.+|.
T Consensus       154 ------n~v~iWnv~tgeali~l~-hpd~i--~S~sfn~d--------Gs~l~TtckDKkvRv~dpr~~~-~v~e~~~he  215 (472)
T KOG0303|consen  154 ------NTVSIWNVGTGEALITLD-HPDMV--YSMSFNRD--------GSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHE  215 (472)
T ss_pred             ------ceEEEEeccCCceeeecC-CCCeE--EEEEeccC--------CceeeeecccceeEEEcCCCCc-Eeeeccccc
Confidence                  699999999999999998 98865  56699988        7899999999999999999864 566655554


Q ss_pred             CCccccccccccccCcceEEEEECCCCeEEEEE----CCCcEEEEeccccccc--cccccCCCCCeEEEEECCCCCEEE-
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS----LDGKIRLYSKTSMRQA--KTAFPGLGSPITHVDVTYDGKWIL-  479 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS----~DGtIRLWD~~t~r~a--kt~L~GH~d~ItsVdfSpDGk~Ll-  479 (634)
                      +.           .  + .-+.|-.+|.|++.+    .+..|-|||...+...  ...|. -+..|.-=-+-||-+.|. 
T Consensus       216 G~-----------k--~-~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl  280 (472)
T KOG0303|consen  216 GA-----------K--P-ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYL  280 (472)
T ss_pred             CC-----------C--c-ceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEE
Confidence            32           1  1 122345566566544    6789999997654321  12232 233444445567776654 


Q ss_pred             E-EcCCcEEEEEcc
Q 047036          480 G-TTDTYLILICTL  492 (634)
Q Consensus       480 S-S~D~tIrLWD~~  492 (634)
                      + --|+.||-+.+.
T Consensus       281 ~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  281 CGKGDSSIRYFEIT  294 (472)
T ss_pred             EecCCcceEEEEec
Confidence            3 569999999865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=8.6e-09  Score=111.75  Aligned_cols=203  Identities=16%  Similarity=0.211  Sum_probs=136.8

Q ss_pred             CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC--CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC
Q 047036          299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE--TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE  376 (634)
Q Consensus       299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle--TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~  376 (634)
                      .++++.|.|...        +||.++.|      ++++++-+.  +...|+.+.-..-.  |....|+|+        |+
T Consensus       215 ~I~sv~FHp~~p--------lllvaG~d------~~lrifqvDGk~N~~lqS~~l~~fP--i~~a~f~p~--------G~  270 (514)
T KOG2055|consen  215 GITSVQFHPTAP--------LLLVAGLD------GTLRIFQVDGKVNPKLQSIHLEKFP--IQKAEFAPN--------GH  270 (514)
T ss_pred             CceEEEecCCCc--------eEEEecCC------CcEEEEEecCccChhheeeeeccCc--cceeeecCC--------Cc
Confidence            346777777765        45667775      678887664  44566766555554  456699998        44


Q ss_pred             -EEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc
Q 047036          377 -STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ  454 (634)
Q Consensus       377 -~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~  454 (634)
                       .+++++.-..+..||+.+++  +..+.    ++    .|+.   ..-+..+..++++ +||.++..|-|.|--..++ .
T Consensus       271 ~~i~~s~rrky~ysyDle~ak--~~k~~----~~----~g~e---~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-e  336 (514)
T KOG2055|consen  271 SVIFTSGRRKYLYSYDLETAK--VTKLK----PP----YGVE---EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-E  336 (514)
T ss_pred             eEEEecccceEEEEeeccccc--ccccc----CC----CCcc---cchhheeEecCCCCeEEEcccCceEEeehhhhh-h
Confidence             89999999999999998754  23331    10    0111   1123445678888 8999999999999998886 4


Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK  533 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~  533 (634)
                      ..+++. ..+.|.+++||.||+.|++ +.++-|.+||++    ...++..|...-+                 ..|..++
T Consensus       337 li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~-----------------v~gts~~  394 (514)
T KOG2055|consen  337 LITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR----QNSCLHRFVDDGS-----------------VHGTSLC  394 (514)
T ss_pred             hhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecC----CcceEEEEeecCc-----------------cceeeee
Confidence            666665 4557999999999999998 779999999987    4466666652211                 1112222


Q ss_pred             cccccccccccCCCCceEEEEEcC-CeEEEEeChhhhccc
Q 047036          534 IHGGHFSWVTENGKQERHLVATVG-KFSVIWDFQQVKNSA  572 (634)
Q Consensus       534 Ft~a~Fs~~t~~g~~E~~IvtStg-~~viiWdl~~v~~~~  572 (634)
                      .++.        |   .+++++++ +.|-|+|.+...++.
T Consensus       395 ~S~n--------g---~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  395 ISLN--------G---SYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             ecCC--------C---ceEEeccCcceEEEeccchhhccC
Confidence            2222        3   47777665 555599988777643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.99  E-value=8.2e-09  Score=112.86  Aligned_cols=142  Identities=20%  Similarity=0.244  Sum_probs=106.5

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      +..++.+++++++-|      ++++||+  .-|++-+-......   .+++|.|.        | .+|.|..-+..++.|
T Consensus       375 a~hps~~q~~T~gqd------k~v~lW~--~~k~~wt~~~~d~~---~~~~fhps--------g-~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  375 ATHPSKNQLLTCGQD------KHVRLWN--DHKLEWTKIIEDPA---ECADFHPS--------G-VVAVGTATGRWFVLD  434 (626)
T ss_pred             EcCCChhheeeccCc------ceEEEcc--CCceeEEEEecCce---eEeeccCc--------c-eEEEeeccceEEEEe
Confidence            334556677888765      7999999  35666554444332   24599997        5 899999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc-cccccccccCCCCCeEEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-MRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-~r~akt~L~GH~d~ItsV  469 (634)
                      ..+. .+|+.-.                -+.+++++.++|+| +||+||.|+-|.||-+.. +|..+..=.-|+.||++|
T Consensus       435 ~e~~-~lv~~~~----------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL  497 (626)
T KOG2106|consen  435 TETQ-DLVTIHT----------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL  497 (626)
T ss_pred             cccc-eeEEEEe----------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe
Confidence            9873 3333211                14578999999999 899999999999998753 222222222456999999


Q ss_pred             EECCCCCEEEE-EcCCcEEEEE
Q 047036          470 DVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       470 dfSpDGk~LlS-S~D~tIrLWD  490 (634)
                      +||+|++||.+ |-|=-|+.|.
T Consensus       498 DwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  498 DWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             eecCCCceEEeccCceEEEEEc
Confidence            99999999999 9999999994

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.6e-09  Score=126.90  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=102.2

Q ss_pred             CcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +.|.+||+..=+.-.++-+  -.+.  |.+++++  .|.     .++++||+.++++-+||+|..+. |-.+..|..   
T Consensus       139 geI~iWDlnn~~tP~~~~~~~~~~e--I~~lsWN--rkv-----qhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~---  205 (1049)
T KOG0307|consen  139 GEILIWDLNKPETPFTPGSQAPPSE--IKCLSWN--RKV-----SHILASGSPSGRAVIWDLRKKKP-IIKLSDTPG---  205 (1049)
T ss_pred             CcEEEeccCCcCCCCCCCCCCCccc--ceEeccc--hhh-----hHHhhccCCCCCceeccccCCCc-ccccccCCC---
Confidence            7999999985333222311  1122  3444554  444     35899999999999999997644 334433221   


Q ss_pred             ccccccccccCcceEEEEECCCC--eEEEEECCC---cEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-EcC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDG---KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-TTD  483 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG--~IASGS~DG---tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D  483 (634)
                                ...++.+++.|++  +|+++|.|.   .|.|||++........|.+|.-.|.+|++++.+ ++|+| ++|
T Consensus       206 ----------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD  275 (1049)
T KOG0307|consen  206 ----------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD  275 (1049)
T ss_pred             ----------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC
Confidence                      2457889999998  688888765   799999764333445678999999999999988 88888 899


Q ss_pred             CcEEEEEcccccCCCCeee
Q 047036          484 TYLILICTLFSDKDGKTKT  502 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~  502 (634)
                      +.|++|+..    +|+-+-
T Consensus       276 ~~ii~wN~~----tgEvl~  290 (1049)
T KOG0307|consen  276 NRIICWNPN----TGEVLG  290 (1049)
T ss_pred             CCeeEecCC----CceEee
Confidence            999999975    565443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=1.6e-09  Score=119.44  Aligned_cols=128  Identities=13%  Similarity=0.211  Sum_probs=99.3

Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC-------CceEEecccCCC
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR-------SGIVQNMVKGDS  407 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~-------~~~Vq~l~gh~s  407 (634)
                      .+-|.+.-     ++..|.+.++  ...|.|.        ...+++|+.|++|++|.+...       -..+.++.+|..
T Consensus       281 ~k~w~ik~-----tl~s~~d~ir--~l~~~~s--------ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g  345 (577)
T KOG0642|consen  281 TKKWNIKF-----TLRSHDDCIR--ALAFHPS--------EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG  345 (577)
T ss_pred             heecceee-----eeecchhhhh--hhhcCCC--------CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC
Confidence            45688753     7888988764  5588876        358999999999999999421       123445555554


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc---------cccccccccCCCCCeEEEEECCCCCE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS---------MRQAKTAFPGLGSPITHVDVTYDGKW  477 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t---------~r~akt~L~GH~d~ItsVdfSpDGk~  477 (634)
                                     ++-|++.+.+| ++.+|+.||+||+|++..         ......+|.||++.|+.|++|+.-..
T Consensus       346 ---------------PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~  410 (577)
T KOG0642|consen  346 ---------------PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR  410 (577)
T ss_pred             ---------------ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence                           45799999999 899999999999994421         11244578899999999999999999


Q ss_pred             EEE-EcCCcEEEEEcc
Q 047036          478 ILG-TTDTYLILICTL  492 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~  492 (634)
                      |++ |.|+|+|+|...
T Consensus       411 Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPT  426 (577)
T ss_pred             eeeecCCceEEeeccC
Confidence            999 999999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=4.5e-08  Score=114.20  Aligned_cols=189  Identities=16%  Similarity=0.254  Sum_probs=121.2

Q ss_pred             CCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcc----eeeEEeCCcceEEecCCCCCCCCCCcEEEE
Q 047036          265 DNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPK----KALLMRGETNMMLMSPLKDGKPQAPGVQQL  338 (634)
Q Consensus       265 D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~----~~mL~~~D~~mllsss~d~~~~~~~TIrlW  338 (634)
                      ...+++.+  .+|.||.-..+.     ....|+.+     . |-+.    -.++...|..|+|+++.|      +.||+|
T Consensus      1076 ~p~i~~ad~r~~i~vwd~e~~~-----~l~~F~n~-----~-~~~t~Vs~l~liNe~D~aLlLtas~d------GvIRIw 1138 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGR-----LLNGFDNG-----A-FPDTRVSDLELINEQDDALLLTASSD------GVIRIW 1138 (1387)
T ss_pred             CceeEEcCCcceEEEEecccCc-----eeccccCC-----C-CCCCccceeeeecccchhheeeeccC------ceEEEe
Confidence            44555555  588998854432     12233322     1 2222    234555788899999886      799999


Q ss_pred             eC-----CCCcEEEEEeccCCCcce-----eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          339 DI-----ETGKIVTEWKFEKDGTDI-----TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       339 Dl-----eTGK~V~~lkgH~~~V~I-----~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                      +-     .+-++|.-|.+=++-+..     .|+++-..        ...|+++++-+.||+||+.... +++.+.     
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~--------~G~Ll~tGd~r~IRIWDa~~E~-~~~diP----- 1204 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ--------SGHLLVTGDVRSIRIWDAHKEQ-VVADIP----- 1204 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhh--------CCeEEecCCeeEEEEEecccce-eEeecc-----
Confidence            73     334677777553331110     24455443        3467777779999999997543 345543     


Q ss_pred             ccccccccccccCcceEEEEEC-CCC-eEEEEECCCcEEEEeccccc--cccccccCCCCC--eEEEEECCCCCE-EEE-
Q 047036          409 VLHWTQGHQFSRGTNFQCFAST-GDG-SIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSP--ITHVDVTYDGKW-ILG-  480 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s-~dG-~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~--ItsVdfSpDGk~-LlS-  480 (634)
                               |.+...++++..+ ..| .||.|-.||.||+||.+...  ........|.++  |.++.|-+.|-- |+| 
T Consensus      1205 ---------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1205 ---------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred             ---------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence                     1233334444332 234 79999999999999976421  123455689988  999999998866 888 


Q ss_pred             EcCCcEEEEEccc
Q 047036          481 TTDTYLILICTLF  493 (634)
Q Consensus       481 S~D~tIrLWD~~~  493 (634)
                      |.|+.|.+||+++
T Consensus      1276 s~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRM 1288 (1387)
T ss_pred             ccCCeEEEEeccc
Confidence            9999999999873

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=7.9e-09  Score=108.01  Aligned_cols=88  Identities=14%  Similarity=0.161  Sum_probs=66.8

Q ss_pred             EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEE
Q 047036          360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG  438 (634)
Q Consensus       360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG  438 (634)
                      ++.|++-        |.+||+|+.||+|-+||+-+.+ +...|.+|.-               +++|+|.|++| .|+++
T Consensus        28 ~~~Fs~~--------G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~---------------pi~sl~WS~dgr~Llts   83 (405)
T KOG1273|consen   28 CCQFSRW--------GDYLAVGCANGRVVIYDFDTFR-IARMLSAHVR---------------PITSLCWSRDGRKLLTS   83 (405)
T ss_pred             eEEeccC--------cceeeeeccCCcEEEEEccccc-hhhhhhcccc---------------ceeEEEecCCCCEeeee
Confidence            4599998        7899999999999999998875 3455655543               56899999999 69999


Q ss_pred             ECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036          439 SLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       439 S~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp  473 (634)
                      |.|..|+|||+..+. +...+. ...||+++.|.|
T Consensus        84 S~D~si~lwDl~~gs-~l~rir-f~spv~~~q~hp  116 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGS-PLKRIR-FDSPVWGAQWHP  116 (405)
T ss_pred             cCCceeEEEeccCCC-ceeEEE-ccCccceeeecc
Confidence            999999999998763 333332 334555555544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=7.7e-08  Score=100.47  Aligned_cols=204  Identities=13%  Similarity=0.141  Sum_probs=120.9

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCC--C--cEEEEEeccCCCcceeEEEE-ecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIET--G--KIVTEWKFEKDGTDITMRDI-TNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleT--G--K~V~~lkgH~~~V~I~vvsf-sPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .-++.+.+++.|      .+|++||.+.  |  .+-..|+.|.+.| ..| .+ +|.  |     |+.+|++|.|+||.+
T Consensus        23 ~~GRRmAtCSsD------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si-~rV-~WAhPE--f-----GqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   23 FYGRRMATCSSD------QTVKIWDSTSDSGTWSCTSSWRAHDGSI-WRV-VWAHPE--F-----GQVVATCSYDRTVSI   87 (361)
T ss_pred             ccCceeeeccCC------CcEEEEeccCCCCceEEeeeEEecCCcE-EEE-EecCcc--c-----cceEEEEecCCceee
Confidence            334556777776      6999999543  3  4778899999987 355 55 444  4     679999999999999


Q ss_pred             EEcCCCCceEEecccCCCCcccccccccc-ccCcceEEEEECCC--C-eEEEEECCCcEEEEecccccccc---------
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQF-SRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAK---------  456 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y-~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~ak---------  456 (634)
                      |.=..     ..+.+|..   .|..-... -....++.|.|.|.  | .+|+++.||++|||+....-.+.         
T Consensus        88 WEE~~-----~~~~~~~~---~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~  159 (361)
T KOG2445|consen   88 WEEQE-----KSEEAHGR---RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ  159 (361)
T ss_pred             eeecc-----cccccccc---eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence            97531     11222211   01100000 12345677788775  5 69999999999999975421111         


Q ss_pred             ---ccccCCCCCeEEEEECCCC---CEEEEEcCC------cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEee--cC
Q 047036          457 ---TAFPGLGSPITHVDVTYDG---KWILGTTDT------YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKL--TP  522 (634)
Q Consensus       457 ---t~L~GH~d~ItsVdfSpDG---k~LlSS~D~------tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L--~P  522 (634)
                         ..+..+..+--+|.++|.-   .+||.++|.      .+.||...   ..|+                |.+++  .|
T Consensus       160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~---e~~r----------------Kw~kva~L~  220 (361)
T KOG2445|consen  160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN---ENGR----------------KWLKVAELP  220 (361)
T ss_pred             hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec---CCcc----------------eeeeehhcC
Confidence               1111466677788888542   346667776      88888632   1221                11111  12


Q ss_pred             CCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhh
Q 047036          523 LDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQV  568 (634)
Q Consensus       523 e~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v  568 (634)
                      .|.-. ...++|.|.     .  |..-..|++++...|.||+++.+
T Consensus       221 d~~dp-I~di~wAPn-----~--Gr~y~~lAvA~kDgv~I~~v~~~  258 (361)
T KOG2445|consen  221 DHTDP-IRDISWAPN-----I--GRSYHLLAVATKDGVRIFKVKVA  258 (361)
T ss_pred             CCCCc-ceeeeeccc-----c--CCceeeEEEeecCcEEEEEEeec
Confidence            22111 135777776     3  33334565555444999999853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.95  E-value=2.4e-08  Score=103.49  Aligned_cols=135  Identities=15%  Similarity=0.199  Sum_probs=96.4

Q ss_pred             CcEEEEeCCCCcE-EEEEec-----cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEec-ccC
Q 047036          333 PGVQQLDIETGKI-VTEWKF-----EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM-VKG  405 (634)
Q Consensus       333 ~TIrlWDleTGK~-V~~lkg-----H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l-~gh  405 (634)
                      ..|-+|+++.+.. +.++..     |...  ++.-+++|--      .+.++++ ..|+++..||+|+-.+. ..+ ..|
T Consensus       144 n~i~l~~l~ess~~vaev~ss~s~e~~~~--ftsg~WspHH------dgnqv~t-t~d~tl~~~D~RT~~~~-~sI~dAH  213 (370)
T KOG1007|consen  144 NNIVLWSLDESSKIVAEVLSSESAEMRHS--FTSGAWSPHH------DGNQVAT-TSDSTLQFWDLRTMKKN-NSIEDAH  213 (370)
T ss_pred             CceEEEEcccCcchheeecccccccccce--ecccccCCCC------ccceEEE-eCCCcEEEEEccchhhh-cchhhhh
Confidence            4699999988765 555532     2221  1233556631      1456665 46899999999986542 222 223


Q ss_pred             CCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-E
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-T  481 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S  481 (634)
                      ..               .+..+-|+|+-  +||+|+.||-|||||.+..+.+.+.|++|..+|++|.|.|-- +.||+ +
T Consensus       214 gq---------------~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  214 GQ---------------RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             cc---------------eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence            22               24555667776  699999999999999876566778999999999999999865 45567 9


Q ss_pred             cCCcEEEEEcc
Q 047036          482 TDTYLILICTL  492 (634)
Q Consensus       482 ~D~tIrLWD~~  492 (634)
                      .|..|.||.+.
T Consensus       279 SDs~V~Lsca~  289 (370)
T KOG1007|consen  279 SDSAVNLSCAS  289 (370)
T ss_pred             CCceeEEEecc
Confidence            99999999875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.93  E-value=3.2e-09  Score=108.74  Aligned_cols=149  Identities=15%  Similarity=0.225  Sum_probs=108.1

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCC----------cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETG----------KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTG----------K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      ...+..+++.+..     ++.+-+||+.+|          +++.....|...|  ..+.|.+.        -..=++|+.
T Consensus       161 ~c~s~~lllaGyE-----sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv--lsldyas~--------~~rGisgga  225 (323)
T KOG0322|consen  161 ACGSTFLLLAGYE-----SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV--LSLDYASS--------CDRGISGGA  225 (323)
T ss_pred             cccceEEEEEecc-----CCeEEEEEccCCceeeccccccccccchhhccCcc--eeeeechh--------hcCCcCCCc
Confidence            3445566666664     389999999999          6666677888876  23466654        124567888


Q ss_pred             CCeEEEEEcCCC-CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccC
Q 047036          384 DNRLCQWDMRDR-SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG  461 (634)
Q Consensus       384 D~tIklWD~R~~-~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~G  461 (634)
                      +..+-.|.+.-. +.+ + +   ...       +. ..+.-++-+.+-||+ .+|+++.|+.||+|..++++ +...|.-
T Consensus       226 ~dkl~~~Sl~~s~gsl-q-~---~~e-------~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLky  291 (323)
T KOG0322|consen  226 DDKLVMYSLNHSTGSL-Q-I---RKE-------IT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKY  291 (323)
T ss_pred             cccceeeeeccccCcc-c-c---cce-------EE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhh
Confidence            888888887632 111 1 0   000       00 012234455667898 58999999999999999985 8889999


Q ss_pred             CCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          462 LGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      |.+.|.+|+||||-..+|+ |.|.+|-||++
T Consensus       292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999888888 99999999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.92  E-value=2.1e-08  Score=105.17  Aligned_cols=190  Identities=14%  Similarity=0.180  Sum_probs=126.7

Q ss_pred             EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCC---CC-CcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGG---SS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~---~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ...++| +|+..+..|  +.|+||....-|.........+.+.   +. +..-+|+|..       ..|+..++.-.   
T Consensus       161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-------~~~~a~gsY~q---  230 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-------SKTLAVGSYGQ---  230 (406)
T ss_pred             heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-------Ccceeeecccc---
Confidence            677889 999999988  6899998744442111111111110   00 1333455543       34555565532   


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                       .--||-||  .+..+..+-||.++|  +-++|.++        |+.+++|+. |-.|-.||+|..+.+|-.|.+|..- 
T Consensus       231 -~~giy~~~--~~~pl~llggh~gGv--ThL~~~ed--------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~-  296 (406)
T KOG2919|consen  231 -RVGIYNDD--GRRPLQLLGGHGGGV--THLQWCED--------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD-  296 (406)
T ss_pred             -eeeeEecC--CCCceeeecccCCCe--eeEEeccC--------cCeecccccCCCeEEEEeehhccchhhhhhhhccC-
Confidence             12355555  567889999999997  56799999        789999987 7889999999877666667655321 


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT  482 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~  482 (634)
                                ++-++ -+-+.|.| .||+|+-||.|++||+.+.-.....++.|.+.|++|+++|-=..+|++.
T Consensus       297 ----------TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  297 ----------TNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ----------ccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence                      11111 12346777 7999999999999998872234567788999999999999955444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=3.4e-08  Score=104.17  Aligned_cols=155  Identities=16%  Similarity=0.230  Sum_probs=109.0

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----CCCeEEEEE
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----DDNRLCQWD  391 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----~D~tIklWD  391 (634)
                      ..+++++.|      ++||+||+.+-..  +..|.+|....   ..+|.-..|      .+++++|.    +|-.|.+||
T Consensus        85 h~v~s~ssD------G~Vr~wD~Rs~~e~a~~~~~~~~~~~---f~~ld~nck------~~ii~~GtE~~~s~A~v~lwD  149 (376)
T KOG1188|consen   85 HGVISCSSD------GTVRLWDIRSQAESARISWTQQSGTP---FICLDLNCK------KNIIACGTELTRSDASVVLWD  149 (376)
T ss_pred             CeeEEeccC------CeEEEEEeecchhhhheeccCCCCCc---ceEeeccCc------CCeEEeccccccCceEEEEEE
Confidence            456777776      7999999987543  45678887432   336665444      46888885    578899999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccc--ccccccCCCCCeE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQ--AKTAFPGLGSPIT  467 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~--akt~L~GH~d~It  467 (634)
                      +|...+++..+          .+.    +.-.++++.|.|..  .|+|||.||-|-|||+..-..  +....-.|+..|-
T Consensus       150 vR~~qq~l~~~----------~eS----H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~  215 (376)
T KOG1188|consen  150 VRSEQQLLRQL----------NES----HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH  215 (376)
T ss_pred             eccccchhhhh----------hhh----ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence            99876533332          111    23457899998865  799999999999999865321  2222225889999


Q ss_pred             EEEECCCC-CEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          468 HVDVTYDG-KWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       468 sVdfSpDG-k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      .+.|.-+| +.|-+ |...+..+|+..    .|.+...|.
T Consensus       216 ~igw~~~~ykrI~clTH~Etf~~~ele----~~~~~~~~~  251 (376)
T KOG1188|consen  216 LIGWLSKKYKRIMCLTHMETFAIYELE----DGSEETWLE  251 (376)
T ss_pred             eeeeecCCcceEEEEEccCceeEEEcc----CCChhhccc
Confidence            99999999 34667 999999999986    455444333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.90  E-value=2.9e-07  Score=96.48  Aligned_cols=197  Identities=13%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             eee-CCCeEEEe----cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          261 LGA-LDNSFLVS----DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       261 vG~-~D~sfvv~----G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      +++ +|+.++.-    +.+|.||....+|.... ....+.+.....+.+|        ++++++|+.+....     ++|
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~--------~p~g~~l~v~~~~~-----~~v  150 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-PIQIIEGLEGCHSANI--------DPDNRTLWVPCLKE-----DRI  150 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-ceeeccCCCcccEeEe--------CCCCCEEEEeeCCC-----CEE
Confidence            444 45544432    36788888755552211 1111212111133334        44555555544432     689


Q ss_pred             EEEeCCCCcEEE-------EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCC-C--ceEEeccc
Q 047036          336 QQLDIETGKIVT-------EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDR-S--GIVQNMVK  404 (634)
Q Consensus       336 rlWDleTGK~V~-------~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~-~--~~Vq~l~g  404 (634)
                      ++||+.+...+.       ....... .  .-+.|+|+        ++.++++.. +++|.+||+... +  .+++.+..
T Consensus       151 ~v~d~~~~g~l~~~~~~~~~~~~g~~-p--~~~~~~pd--------g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~  219 (330)
T PRK11028        151 RLFTLSDDGHLVAQEPAEVTTVEGAG-P--RHMVFHPN--------QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM  219 (330)
T ss_pred             EEEEECCCCcccccCCCceecCCCCC-C--ceEEECCC--------CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence            999998743221       1111222 1  23499998        567877765 999999999742 1  22344321


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccccccccccccCC---CCCeEEEEECCCCCEEE
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFPGL---GSPITHVDVTYDGKWIL  479 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~GH---~d~ItsVdfSpDGk~Ll  479 (634)
                      +..         .+.....-..++++|+| +|+++. .++.|.+|++.... ...++.+|   +....++.|+|||++|+
T Consensus       220 ~p~---------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~~~~~~~~~~~p~~~~~~~dg~~l~  289 (330)
T PRK11028        220 MPA---------DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLSFEGHQPTETQPRGFNIDHSGKYLI  289 (330)
T ss_pred             CCC---------cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEEEeEEEeccccCCceEECCCCCEEE
Confidence            100         00000011357789999 677774 57999999974321 11122222   23456899999999999


Q ss_pred             E-E-cCCcEEEEEcc
Q 047036          480 G-T-TDTYLILICTL  492 (634)
Q Consensus       480 S-S-~D~tIrLWD~~  492 (634)
                      + . .+++|.+|++.
T Consensus       290 va~~~~~~v~v~~~~  304 (330)
T PRK11028        290 AAGQKSHHISVYEID  304 (330)
T ss_pred             EEEccCCcEEEEEEc
Confidence            7 4 48999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=3.4e-08  Score=109.02  Aligned_cols=218  Identities=13%  Similarity=0.082  Sum_probs=141.2

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      ++.+-++.++.+|+++++|      ..|.+||.-.-|.+... .||...|  -.+.|-|-.      ..++++||..|.-
T Consensus        53 VN~LeWn~dG~lL~SGSDD------~r~ivWd~~~~KllhsI~TgHtaNI--FsvKFvP~t------nnriv~sgAgDk~  118 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGSDD------TRLIVWDPFEYKLLHSISTGHTANI--FSVKFVPYT------NNRIVLSGAGDKL  118 (758)
T ss_pred             ecceeecCCCCEEeecCCc------ceEEeecchhcceeeeeecccccce--eEEeeeccC------CCeEEEeccCcce
Confidence            5677788888888888776      57999999888888776 6898854  566898863      3689999999999


Q ss_pred             EEEEEcCCCCc------e---EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccc
Q 047036          387 LCQWDMRDRSG------I---VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQA  455 (634)
Q Consensus       387 IklWD~R~~~~------~---Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~a  455 (634)
                      |++.|+.....      +   ......|...               +--+|+-|++  .+-|+|.||+||=||++....+
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r---------------VKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDR---------------VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhh---------------hhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence            99999874211      0   0111122221               2235667777  5889999999999998642222


Q ss_pred             ccccc-------CCC--CCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecC---CCCCCCCC-ceeEee
Q 047036          456 KTAFP-------GLG--SPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSG---RMGNKIPA-PRLLKL  520 (634)
Q Consensus       456 kt~L~-------GH~--d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~g---h~~~~~p~-pr~L~L  520 (634)
                      .....       -|.  -...++++||.-.++++  +.|-+.||+|.+..      +..|.+   ++. -.|. .|+++-
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~------lks~~s~~~~~~-~pp~~~~cv~y  256 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV------LKSFRSDGTMNT-CPPKDCRCVRY  256 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh------ccCCCCCccccC-CCCcccchhhe
Confidence            22111       111  23578999998877666  88999999995421      111221   111 1122 266654


Q ss_pred             -cCCCc-cccCCC----cccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          521 -TPLDS-HLAGTD----NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       521 -~Pe~~-~~~g~~----i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                       .|.|. ...|+-    ...+--.||+     +.+..+|.=.+.+|+++|+.
T Consensus       257 f~p~hlkn~~gn~~~~~~~~t~vtfnp-----NGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  257 FSPGHLKNSQGNLDRYITCCTYVTFNP-----NGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             ecCccccCcccccccceeeeEEEEECC-----CCcEEEEeeCCeEEEEEeec
Confidence             47776 221211    1233445664     23678999889999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.89  E-value=1.4e-07  Score=100.33  Aligned_cols=156  Identities=13%  Similarity=0.166  Sum_probs=108.9

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-CCCcceeEEEEecCCCCCCCCCCCEEEE-Ee
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-KDGTDITMRDITNDTKSSQLDPSESTFL-GL  382 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-~~~V~I~vvsfsPd~K~~q~~~g~~laS-GS  382 (634)
                      +-|...+...=.++.|+..=.       ..|+++|+.+-|++.++..- .+.  -.+.+++|..-      +.++|- ++
T Consensus        85 ~fpt~IL~VrmNr~RLvV~Le-------e~IyIydI~~MklLhTI~t~~~n~--~gl~AlS~n~~------n~ylAyp~s  149 (391)
T KOG2110|consen   85 FFPTSILAVRMNRKRLVVCLE-------ESIYIYDIKDMKLLHTIETTPPNP--KGLCALSPNNA------NCYLAYPGS  149 (391)
T ss_pred             ecCCceEEEEEccceEEEEEc-------ccEEEEecccceeehhhhccCCCc--cceEeeccCCC------CceEEecCC
Confidence            345544444444555554433       24999999999999887543 121  13557777632      234443 33


Q ss_pred             C-CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCc-EEEEeccccccccccc
Q 047036          383 D-DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGK-IRLYSKTSMRQAKTAF  459 (634)
Q Consensus       383 ~-D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGt-IRLWD~~t~r~akt~L  459 (634)
                      . -+.|.+||+-.-+ .+.++..|.+               .+.|+||+++| .||+||..|| ||+|.+..++ ..+.|
T Consensus       150 ~t~GdV~l~d~~nl~-~v~~I~aH~~---------------~lAalafs~~G~llATASeKGTVIRVf~v~~G~-kl~eF  212 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQ-PVNTINAHKG---------------PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ-KLYEF  212 (391)
T ss_pred             CCCceEEEEEcccce-eeeEEEecCC---------------ceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-Eeeee
Confidence            3 5889999987643 3566666654               46899999999 7999999997 6999998874 55555


Q ss_pred             c-CCC-CCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          460 P-GLG-SPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       460 ~-GH~-d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      . |-. -.|.+|+||||+++|++ |.-.||.++-+.
T Consensus       213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            5 322 35899999999999998 788999999754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.88  E-value=5.1e-08  Score=109.84  Aligned_cols=190  Identities=15%  Similarity=0.155  Sum_probs=125.8

Q ss_pred             EEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEE
Q 047036          258 SLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQ  336 (634)
Q Consensus       258 ~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIr  336 (634)
                      .||+|..++.+.+.+..++-|+          ....+.||. ++++.+|.-.+.      ..++|++++.|     ..||
T Consensus       161 lla~Ggs~~~v~~~s~~~d~f~----------~v~el~GH~DWIrsl~f~~~~~------~~~~laS~SQD-----~yIR  219 (764)
T KOG1063|consen  161 LLACGGSKFVVDLYSSSADSFA----------RVAELEGHTDWIRSLAFARLGG------DDLLLASSSQD-----RYIR  219 (764)
T ss_pred             EEEecCcceEEEEeccCCccee----------EEEEeeccchhhhhhhhhccCC------CcEEEEecCCc-----eEEE
Confidence            5666665555544443344333          123566774 457888774432      24445554433     8999


Q ss_pred             EEeCCCCc---------------------EEEEE----------eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          337 QLDIETGK---------------------IVTEW----------KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       337 lWDleTGK---------------------~V~~l----------kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      ||.+.-+-                     +..++          .||.++|  ..+.++|.        +..|+|+|.|+
T Consensus       220 iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV--~sv~W~p~--------~~~LLSASaDk  289 (764)
T KOG1063|consen  220 IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV--YSVWWHPE--------GLDLLSASADK  289 (764)
T ss_pred             EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce--EEEEEccc--------hhhheecccCc
Confidence            99875433                     22233          3999998  46699998        57899999999


Q ss_pred             eEEEEEcCCCCce---EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--cccccc
Q 047036          386 RLCQWDMRDRSGI---VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--QAKTAF  459 (634)
Q Consensus       386 tIklWD~R~~~~~---Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~akt~L  459 (634)
                      ++.+|-+.....+   +-.+..-         +   -...-|..+-+++++ .|++-|.-|-.|||-.....  .+...+
T Consensus       290 smiiW~pd~~tGiWv~~vRlGe~---------g---g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i  357 (764)
T KOG1063|consen  290 SMIIWKPDENTGIWVDVVRLGEV---------G---GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI  357 (764)
T ss_pred             ceEEEecCCccceEEEEEEeecc---------c---ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence            9999998754221   1112100         0   011236677778888 67888999999999832211  122345


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                      .||.+.|++|++.|.|.||+| |.|.|-||+-
T Consensus       358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             ccccccceeeeecCCCCEEEEeccccceeeec
Confidence            699999999999999999999 9999999974

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=1.2e-07  Score=96.51  Aligned_cols=205  Identities=18%  Similarity=0.220  Sum_probs=131.2

Q ss_pred             ccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC---------CCc-EEEEEeccCCCcceeEEEEecCCCCCC
Q 047036          302 GSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE---------TGK-IVTEWKFEKDGTDITMRDITNDTKSSQ  371 (634)
Q Consensus       302 g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle---------TGK-~V~~lkgH~~~V~I~vvsfsPd~K~~q  371 (634)
                      ..+++|.+..|+        ++..+      ++|.+..+.         -|| .+-.+++|...|  .-++|..      
T Consensus        15 ~qa~sp~~~~l~--------agn~~------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi--y~~~f~d------   72 (325)
T KOG0649|consen   15 AQAISPSKQYLF--------AGNLF------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI--YYLAFHD------   72 (325)
T ss_pred             HHhhCCcceEEE--------EecCC------CeEEEEEehhhhccccCCCCCcceeeccccCCCe--eeeeeeh------
Confidence            445677776544        23222      566666542         233 455679999875  4557773      


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc----ccccccCcceEEEEECCC-CeEEEEECCCcEEE
Q 047036          372 LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ----GHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRL  446 (634)
Q Consensus       372 ~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~----g~~y~~~~~fssva~s~d-G~IASGS~DGtIRL  446 (634)
                          ..|++|++ +.|+=|--+.-.+   .+  |..+.  |-.    ...-..-..+.++...|. +.|..++.|+.|.-
T Consensus        73 ----~~Lls~gd-G~V~gw~W~E~~e---s~--~~K~l--we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~  140 (325)
T KOG0649|consen   73 ----DFLLSGGD-GLVYGWEWNEEEE---SL--ATKRL--WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ  140 (325)
T ss_pred             ----hheeeccC-ceEEEeeehhhhh---hc--cchhh--hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE
Confidence                47888776 9999998663211   00  01100  100    001112334677777765 47888889999999


Q ss_pred             EeccccccccccccCCCCCeEEEEE-CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036          447 YSKTSMRQAKTAFPGLGSPITHVDV-TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD  524 (634)
Q Consensus       447 WD~~t~r~akt~L~GH~d~ItsVdf-SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~  524 (634)
                      ||+.+++ .+..+.||+|.|.+|.- +.+|+ |+| +.|+++||||++    ++++.+..+-.-.     |-+|+  |.-
T Consensus       141 ~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~k----t~k~v~~ie~yk~-----~~~lR--p~~  207 (325)
T KOG0649|consen  141 VDLEDGR-IQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTK----TQKHVSMIEPYKN-----PNLLR--PDW  207 (325)
T ss_pred             EEecCCE-EEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEecc----ccceeEEeccccC-----hhhcC--ccc
Confidence            9999996 88999999999999999 66665 566 999999999986    6777765542221     11222  221


Q ss_pred             ccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          525 SHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       525 ~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      .       +++.|       ...+|.|+|.+.|+-+-+|+|..
T Consensus       208 g-------~wiga-------la~~edWlvCGgGp~lslwhLrs  236 (325)
T KOG0649|consen  208 G-------KWIGA-------LAVNEDWLVCGGGPKLSLWHLRS  236 (325)
T ss_pred             C-------ceeEE-------EeccCceEEecCCCceeEEeccC
Confidence            1       12222       12347899999999999999973

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.85  E-value=6.5e-07  Score=93.98  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=113.8

Q ss_pred             EEEeee-CCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeC-CcceEEecCCCCCCCCCCcE
Q 047036          258 SLTLGA-LDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRG-ETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~~~~~~~TI  335 (634)
                      .++|-. .|+-.||--++|-||.-.+ +++   .+..+.+.       -.|++.+.... ..+++|+-|.-+    -+.|
T Consensus        97 I~~V~l~r~riVvvl~~~I~VytF~~-n~k---~l~~~et~-------~NPkGlC~~~~~~~k~~LafPg~k----~Gqv  161 (346)
T KOG2111|consen   97 IKAVKLRRDRIVVVLENKIYVYTFPD-NPK---LLHVIETR-------SNPKGLCSLCPTSNKSLLAFPGFK----TGQV  161 (346)
T ss_pred             eeeEEEcCCeEEEEecCeEEEEEcCC-Chh---heeeeecc-------cCCCceEeecCCCCceEEEcCCCc----cceE
Confidence            788888 7888899999999998543 222   23333332       13555444332 235677777753    3899


Q ss_pred             EEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe-EEEEEcCCCCceEEecccCCCCcccc
Q 047036          336 QQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR-LCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       336 rlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t-IklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++.|+..-+.  -.....|...  |.+++++-+        |..+||||..|| ||+||.+++.. ++.+..        
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~--Iacv~Ln~~--------Gt~vATaStkGTLIRIFdt~~g~~-l~E~RR--------  222 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSD--IACVALNLQ--------GTLVATASTKGTLIRIFDTEDGTL-LQELRR--------  222 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCc--eeEEEEcCC--------ccEEEEeccCcEEEEEEEcCCCcE-eeeeec--------
Confidence            9999986554  3667899986  567788877        789999999998 58999999764 577642        


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t  451 (634)
                        |.   ....+.|++|||++ +||++|..|||++|.+..
T Consensus       223 --G~---d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 --GV---DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             --CC---chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence              21   23468999999999 899999999999999764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.84  E-value=3.7e-07  Score=97.22  Aligned_cols=180  Identities=11%  Similarity=0.236  Sum_probs=126.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.+++.+...+..|.++...+..   -.|.++.          +.|+.+..+. |+++|++.=+ ++.++..       |
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~I---L~VrmNr----------~RLvV~Lee~-IyIydI~~Mk-lLhTI~t-------~  125 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSI---LAVRMNR----------KRLVVCLEES-IYIYDIKDMK-LLHTIET-------T  125 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCce---EEEEEcc----------ceEEEEEccc-EEEEecccce-eehhhhc-------c
Confidence            68999999999999998887753   2336654          3677777666 9999998532 3444421       0


Q ss_pred             ccccccccCcceEEEEECCCC-eEEE-EE-CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc-EE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVV-GS-LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY-LI  487 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IAS-GS-~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t-Ir  487 (634)
                      -     .....+.++.++..+ +||- +| .-|.|.|||+.+.+ ...++..|.++|-+|+|||||..||+ |..+| ||
T Consensus       126 ~-----~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR  199 (391)
T KOG2110|consen  126 P-----PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR  199 (391)
T ss_pred             C-----CCccceEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence            0     011124445555555 7875 33 46999999998874 78899999999999999999999999 77776 78


Q ss_pred             EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE-EEEcCCeEEEEeCh
Q 047036          488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL-VATVGKFSVIWDFQ  566 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I-vtStg~~viiWdl~  566 (634)
                      ++.+.    +|+.+..|..-.-   |    .+|         ..+.|++.        +   +.| ++|.-.+|-|+-|+
T Consensus       200 Vf~v~----~G~kl~eFRRG~~---~----~~I---------ySL~Fs~d--------s---~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  200 VFSVP----EGQKLYEFRRGTY---P----VSI---------YSLSFSPD--------S---QFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EEEcC----CccEeeeeeCCce---e----eEE---------EEEEECCC--------C---CeEEEecCCCeEEEEEec
Confidence            88874    7888887875441   1    110         24677776        2   355 45677889999998


Q ss_pred             hhhcc
Q 047036          567 QVKNS  571 (634)
Q Consensus       567 ~v~~~  571 (634)
                      ++...
T Consensus       249 ~~~~~  253 (391)
T KOG2110|consen  249 KVSNN  253 (391)
T ss_pred             ccccC
Confidence            87743

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.84  E-value=4.1e-07  Score=99.86  Aligned_cols=143  Identities=14%  Similarity=0.213  Sum_probs=105.5

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE---EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE---WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~---lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      -|.++|++.+.       +.++.|++++|-++++   |+.+...- +.+++|.++         ..+++|-+++.|.+|+
T Consensus       211 td~nliit~Gk-------~H~~Fw~~~~~~l~k~~~~fek~ekk~-Vl~v~F~en---------gdviTgDS~G~i~Iw~  273 (626)
T KOG2106|consen  211 TDPNLIITCGK-------GHLYFWTLRGGSLVKRQGIFEKREKKF-VLCVTFLEN---------GDVITGDSGGNILIWS  273 (626)
T ss_pred             CCCcEEEEeCC-------ceEEEEEccCCceEEEeeccccccceE-EEEEEEcCC---------CCEEeecCCceEEEEe
Confidence            45678888876       5799999999876654   77777643 456699986         4799999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccc-------------
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTA-------------  458 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~-------------  458 (634)
                      .++-+ +.+....|...               +.|++.-.+|.|+||+.|..|-+||-.=.+...+.             
T Consensus       274 ~~~~~-~~k~~~aH~gg---------------v~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  274 KGTNR-ISKQVHAHDGG---------------VFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             CCCce-EEeEeeecCCc---------------eEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence            97643 33333345443               46788889999999999999999993210000011             


Q ss_pred             --------------------------ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          459 --------------------------FPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       459 --------------------------L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                                                ..||++..++++.+|+-..+++ +.|+.++||+
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence                                      1268888888888888888887 8888888887

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.83  E-value=1.7e-08  Score=109.65  Aligned_cols=196  Identities=13%  Similarity=0.119  Sum_probs=135.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.++++|-. |.-+.-++-|.. |  .-+.|-|-        .=+|++++.-+-++--|+.+++ +|..+.--..     
T Consensus       191 ~y~yvYD~~-GtElHClk~~~~-v--~rLeFLPy--------HfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G-----  252 (545)
T KOG1272|consen  191 KYVYVYDNN-GTELHCLKRHIR-V--ARLEFLPY--------HFLLVAASEAGFLKYQDVSTGK-LVASIRTGAG-----  252 (545)
T ss_pred             ceEEEecCC-CcEEeehhhcCc-h--hhhcccch--------hheeeecccCCceEEEeechhh-hhHHHHccCC-----
Confidence            579999955 888888888865 2  34588885        4588899999999999998864 4444421111     


Q ss_pred             ccccccccCcceEEEEECCC-CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                                ....++-+|- .-|-+|...|+|-||..... .....+-.|..+|.+|+|.++|+|+|+ +.|..|+|||
T Consensus       253 ----------~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  253 ----------RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             ----------ccchhhcCCccceEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence                      1223333443 36789999999999998764 466667789999999999999999999 9999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhc
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKN  570 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~  570 (634)
                      ++.    -..+.++..               |-++    ..++|+-            .-.++.|.|++|-||-  ..+.
T Consensus       322 lR~----~~ql~t~~t---------------p~~a----~~ls~Sq------------kglLA~~~G~~v~iw~--d~~~  364 (545)
T KOG1272|consen  322 LRN----FYQLHTYRT---------------PHPA----SNLSLSQ------------KGLLALSYGDHVQIWK--DALK  364 (545)
T ss_pred             ecc----ccccceeec---------------CCCc----ccccccc------------ccceeeecCCeeeeeh--hhhc
Confidence            873    111111111               1111    2233332            2378889999999993  3333


Q ss_pred             ccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          571 SAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       571 ~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                      +..         +...+|---+....|.+++|.
T Consensus       365 ~s~---------~~~~pYm~H~~~~~V~~l~Fc  388 (545)
T KOG1272|consen  365 GSG---------HGETPYMNHRCGGPVEDLRFC  388 (545)
T ss_pred             CCC---------CCCcchhhhccCcccccceec
Confidence            322         223477777777888888884

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.7e-07  Score=104.47  Aligned_cols=237  Identities=11%  Similarity=0.175  Sum_probs=147.0

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI  398 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~  398 (634)
                      .|.+|+.|      +|||+|-+.||+||+++.....   |.+++|+|.++      ...||.+-..+ +.+-++.-+..+
T Consensus       414 wlasGsdD------GtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~------~~vLAvA~~~~-~~ivnp~~G~~~  477 (733)
T KOG0650|consen  414 WLASGSDD------GTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSD------LCVLAVAVGEC-VLIVNPIFGDRL  477 (733)
T ss_pred             eeeecCCC------CcEEEEEeecceEEEEEeecce---eEEEEecCCCC------ceeEEEEecCc-eEEeCccccchh
Confidence            34455544      8999999999999999887652   56779999854      23555555555 888888765221


Q ss_pred             EE-----ecccC---C---CCcccccccc----------ccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccc
Q 047036          399 VQ-----NMVKG---D---SPVLHWTQGH----------QFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMR  453 (634)
Q Consensus       399 Vq-----~l~gh---~---s~V~~~~~g~----------~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r  453 (634)
                      ..     .|...   .   ..|..|+...          ...+...+..+.....| |||+...+   ..|-|.++... 
T Consensus       478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-  556 (733)
T KOG0650|consen  478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-  556 (733)
T ss_pred             hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc-
Confidence            11     11111   1   1244566431          11133455667777888 88886554   56788887643 


Q ss_pred             cccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036          454 QAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK  533 (634)
Q Consensus       454 ~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~  533 (634)
                      .....|.--.+.|..+.|.|---+|+.++..+|||+|+.    ++..+..+.       +..|-|.           .++
T Consensus       557 ~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~----kqelvKkL~-------tg~kwiS-----------~ms  614 (733)
T KOG0650|consen  557 KSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS----KQELVKKLL-------TGSKWIS-----------SMS  614 (733)
T ss_pred             cccCchhhcCCceeEEEecCCCceEEEEeccceEEEehh----HHHHHHHHh-------cCCeeee-----------eee
Confidence            233345444567999999999999999999999999975    222221111       1001110           111


Q ss_pred             cccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc-cc-CC
Q 047036          534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF-AV-TD  611 (634)
Q Consensus       534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f-~~-~~  611 (634)
                      -+|.        |  +..|+++-++-++.+|+.    -..++|+           .++.|...|.+|.| |..| -| ++
T Consensus       615 ihp~--------G--Dnli~gs~d~k~~WfDld----lsskPyk-----------~lr~H~~avr~Va~-H~ryPLfas~  668 (733)
T KOG0650|consen  615 IHPN--------G--DNLILGSYDKKMCWFDLD----LSSKPYK-----------TLRLHEKAVRSVAF-HKRYPLFASG  668 (733)
T ss_pred             ecCC--------C--CeEEEecCCCeeEEEEcc----cCcchhH-----------Hhhhhhhhhhhhhh-ccccceeeee
Confidence            1222        3  468888999999999987    2233454           45666667777888 9988 22 34


Q ss_pred             CCCCCEEEE
Q 047036          612 SPEAPLVVA  620 (634)
Q Consensus       612 ~~~~~iivA  620 (634)
                      +.|..|||-
T Consensus       669 sdDgtv~Vf  677 (733)
T KOG0650|consen  669 SDDGTVIVF  677 (733)
T ss_pred             cCCCcEEEE
Confidence            445677663

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=3.9e-09  Score=116.21  Aligned_cols=130  Identities=18%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      .-||..+++     ++|.||++-|+  .+.|+.+        |++|+|||+|-.|.+||+-.. +++..+.         
T Consensus        35 ~~lrrL~lE-----~eL~GH~GCVN--~LeWn~d--------G~lL~SGSDD~r~ivWd~~~~-KllhsI~---------   89 (758)
T KOG1310|consen   35 TWLRRLDLE-----AELTGHTGCVN--CLEWNAD--------GELLASGSDDTRLIVWDPFEY-KLLHSIS---------   89 (758)
T ss_pred             HHHhhcchh-----hhhccccceec--ceeecCC--------CCEEeecCCcceEEeecchhc-ceeeeee---------
Confidence            467777766     48999999875  5588887        799999999999999999854 4444442         


Q ss_pred             ccccccccCcceEEEEECC---CCeEEEEECCCcEEEEeccc---------cccccccccCCCCCeEEEEECCCC-CEEE
Q 047036          413 TQGHQFSRGTNFQCFASTG---DGSIVVGSLDGKIRLYSKTS---------MRQAKTAFPGLGSPITHVDVTYDG-KWIL  479 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~---dG~IASGS~DGtIRLWD~~t---------~r~akt~L~GH~d~ItsVdfSpDG-k~Ll  479 (634)
                       +||.    .++.|+-|-|   +..|++|+.|..|||||+..         +........-|.+.|.-|+.-|+| ..+.
T Consensus        90 -TgHt----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw  164 (758)
T KOG1310|consen   90 -TGHT----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW  164 (758)
T ss_pred             -cccc----cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence             2332    2455666655   33689999999999999874         111222345799999999999999 5666


Q ss_pred             E-EcCCcEEEEEcc
Q 047036          480 G-TTDTYLILICTL  492 (634)
Q Consensus       480 S-S~D~tIrLWD~~  492 (634)
                      + +.|++||-+|++
T Consensus       165 sasEDGtirQyDiR  178 (758)
T KOG1310|consen  165 SASEDGTIRQYDIR  178 (758)
T ss_pred             EecCCcceeeeccc
Confidence            6 999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.83  E-value=9.7e-10  Score=125.22  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=98.3

Q ss_pred             CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCc
Q 047036          343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGT  422 (634)
Q Consensus       343 GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~  422 (634)
                      -|.|+.+.||.+.|  .++.|...        |..|++|++|.-+++|-+.+..| ..++.||+..+             
T Consensus       180 mk~ikrLlgH~naV--yca~fDrt--------g~~Iitgsdd~lvKiwS~et~~~-lAs~rGhs~di-------------  235 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAV--YCAIFDRT--------GRYIITGSDDRLVKIWSMETARC-LASCRGHSGDI-------------  235 (1113)
T ss_pred             HHHHHHHHhhhhhe--eeeeeccc--------cceEeecCccceeeeeeccchhh-hccCCCCcccc-------------
Confidence            35667889999987  45577765        78999999999999999988766 46777877654             


Q ss_pred             ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                        +-+|.+.+. .||+||.|..||+|-+..+ .....|.||++.|++|+|||=-   .++.|+++++||.+
T Consensus       236 --tdlavs~~n~~iaaaS~D~vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  236 --TDLAVSSNNTMIAAASNDKVIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             --chhccchhhhhhhhcccCceEEEEecCCC-chHHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence              333445455 7999999999999999887 4778999999999999999975   33889999999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=7.4e-08  Score=104.65  Aligned_cols=147  Identities=17%  Similarity=0.283  Sum_probs=113.4

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      +.+++.|+..+..      +.|+|.-..|++.|.+++-...   +.-.+|+.+        +..|++.+.++-|.+||+|
T Consensus       312 Shd~~fia~~G~~------G~I~lLhakT~eli~s~KieG~---v~~~~fsSd--------sk~l~~~~~~GeV~v~nl~  374 (514)
T KOG2055|consen  312 SHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEGV---VSDFTFSSD--------SKELLASGGTGEVYVWNLR  374 (514)
T ss_pred             cCCCCeEEEcccC------ceEEeehhhhhhhhheeeeccE---EeeEEEecC--------CcEEEEEcCCceEEEEecC
Confidence            4677777777764      7899999999999999987643   456688877        5678888888999999999


Q ss_pred             CCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-----cccccccCCCCCeE
Q 047036          394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-----QAKTAFPGLGSPIT  467 (634)
Q Consensus       394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-----~akt~L~GH~d~It  467 (634)
                      ...+ +..+..         +|     .+.-+++|.+.+| +||+||.-|.|-|||..+..     +...++..+.-.|+
T Consensus       375 ~~~~-~~rf~D---------~G-----~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It  439 (514)
T KOG2055|consen  375 QNSC-LHRFVD---------DG-----SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT  439 (514)
T ss_pred             Ccce-EEEEee---------cC-----ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence            8744 444431         11     1223678899999 89999999999999976421     24456667888999


Q ss_pred             EEEECCCCCEEEE---EcCCcEEEEEcc
Q 047036          468 HVDVTYDGKWILG---TTDTYLILICTL  492 (634)
Q Consensus       468 sVdfSpDGk~LlS---S~D~tIrLWD~~  492 (634)
                      +|.|+||++.||-   ..++.+||..+-
T Consensus       440 sl~Fn~d~qiLAiaS~~~knalrLVHvP  467 (514)
T KOG2055|consen  440 SLQFNHDAQILAIASRVKKNALRLVHVP  467 (514)
T ss_pred             eeeeCcchhhhhhhhhccccceEEEecc
Confidence            9999999999874   468999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=5.6e-08  Score=107.55  Aligned_cols=196  Identities=9%  Similarity=0.134  Sum_probs=129.1

Q ss_pred             CeeeEEEc---cCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC------CCC
Q 047036          273 LGLQVYRN---YNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI------ETG  343 (634)
Q Consensus       273 ~~igV~k~---~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl------eTG  343 (634)
                      .+|.+|..   ....-.....+.+|.+|.       -|+-.+.+...+..+++++-|      ++|+.|.+      ...
T Consensus       316 ~~lk~WnLqk~~~s~~~~~epi~tfraH~-------gPVl~v~v~~n~~~~ysgg~D------g~I~~w~~p~n~dp~ds  382 (577)
T KOG0642|consen  316 GTLKLWNLQKAKKSAEKDVEPILTFRAHE-------GPVLCVVVPSNGEHCYSGGID------GTIRCWNLPPNQDPDDS  382 (577)
T ss_pred             cchhhhhhcccCCccccceeeeEEEeccc-------CceEEEEecCCceEEEeeccC------ceeeeeccCCCCCcccc
Confidence            57777876   332211223566777772       355556666677778888765      79999932      222


Q ss_pred             ----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCc----ccccc
Q 047036          344 ----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPV----LHWTQ  414 (634)
Q Consensus       344 ----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V----~~~~~  414 (634)
                          -+...|.||++.|  +.+++++.        ..+|+++|.|+|+++|.+.....+ ...-..|.-|.    ..|.-
T Consensus       383 ~dp~vl~~~l~Ghtdav--w~l~~s~~--------~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  383 YDPSVLSGTLLGHTDAV--WLLALSST--------KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             cCcchhccceeccccce--eeeeeccc--------ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence                2345689999986  56788876        468999999999999998753221 00000111000    00000


Q ss_pred             ccccc------------------------------cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCC
Q 047036          415 GHQFS------------------------------RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       415 g~~y~------------------------------~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~  463 (634)
                      .|.++                              ....+.-+...|.+ ...++..|+.||++|..++. .......|-
T Consensus       453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~a~~  531 (577)
T KOG0642|consen  453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMVAHK  531 (577)
T ss_pred             HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc-cchheeecc
Confidence            11111                              01122233344544 78899999999999988874 667777899


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +.+++++|-|+|-+|++ +.|+.++||.+.
T Consensus       532 ~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             ceecceeecCCCceEEeecCCceeehhhcc
Confidence            99999999999999999 999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.2e-08  Score=109.46  Aligned_cols=111  Identities=24%  Similarity=0.328  Sum_probs=82.2

Q ss_pred             EEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036          425 QCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT  502 (634)
Q Consensus       425 ssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~  502 (634)
                      -++||+++| .||+|+.||++|+|+...+. ....+..|...|..|+|||||+.|++ +.| ..++|++.    +|.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~----~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN----TGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec----cCchhh
Confidence            578999997 79999999999999976653 44456689999999999999999999 888 99999986    453322


Q ss_pred             eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE-EEEEc--CCeEEEEeC
Q 047036          503 GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH-LVATV--GKFSVIWDF  565 (634)
Q Consensus       503 gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~-IvtSt--g~~viiWdl  565 (634)
                                      +++|.     .++..|..++|+.+   +.++.+ |+++.  ++.|+.|++
T Consensus       222 ----------------~~t~~-----~k~~~~~~cRF~~d---~~~~~l~laa~~~~~~~v~~~~~  263 (398)
T KOG0771|consen  222 ----------------RKTPF-----SKDEMFSSCRFSVD---NAQETLRLAASQFPGGGVRLCDI  263 (398)
T ss_pred             ----------------hcCCc-----ccchhhhhceeccc---CCCceEEEEEecCCCCceeEEEe
Confidence                            12232     24678999999853   223444 45543  566776554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=1e-06  Score=96.97  Aligned_cols=128  Identities=14%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCC--eEEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDN--RLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~--tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                      ..|++||+.+|+.  +..+.+|..     ...|+||        |..|+ +.+.++  .|++||+.++..  ..+..+. 
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~-----~~~~SPD--------G~~La~~~~~~g~~~I~~~d~~tg~~--~~lt~~~-  286 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNG-----APAFSPD--------GSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGR-  286 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcC-----CeEECCC--------CCEEEEEEcCCCCcEEEEEECCCCCE--EEccCCC-
Confidence            5799999999964  444556543     2489999        45555 444444  599999987542  3332111 


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECC-CcEEEE--eccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-GKIRLY--SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-GtIRLW--D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                                    ......+++||| +||..+.+ |..+||  |+.++.  ...+..++..+.+++|||||++|+. +.
T Consensus       287 --------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        287 --------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             --------------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEc
Confidence                          123456889999 68777754 455555  655542  2344445556778999999999987 54


Q ss_pred             C---CcEEEEEcc
Q 047036          483 D---TYLILICTL  492 (634)
Q Consensus       483 D---~tIrLWD~~  492 (634)
                      +   ..|.+||+.
T Consensus       351 ~~g~~~I~~~dl~  363 (429)
T PRK03629        351 NGGQQHIAKQDLA  363 (429)
T ss_pred             cCCCceEEEEECC
Confidence            3   357778864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.80  E-value=1.5e-08  Score=112.91  Aligned_cols=141  Identities=14%  Similarity=0.167  Sum_probs=105.2

Q ss_pred             EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcce
Q 047036          345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF  424 (634)
Q Consensus       345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f  424 (634)
                      -|--+-+|.+.|  +-..|+|-   +    ..+||+||.|..|+||-+-.+-  -+.|. +-..++    |+   .+..+
T Consensus        71 ~i~~l~~H~d~V--tDl~FspF---~----D~LLAT~S~D~~VKiW~lp~g~--~q~LS-ape~~~----g~---~~~~v  131 (1012)
T KOG1445|consen   71 DIGILAAHGDQV--TDLGFSPF---A----DELLATCSRDEPVKIWKLPRGH--SQKLS-APEIDV----GG---GNVIV  131 (1012)
T ss_pred             ccceeeccccee--eccCcccc---c----hhhhhcccCCCeeEEEecCCCc--ccccC-Ccceee----cC---CceEE
Confidence            455678999976  34578874   2    4799999999999999976221  13341 001110    11   23456


Q ss_pred             EEEEECC--CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036          425 QCFASTG--DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       425 ssva~s~--dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      -|+-|.|  ||.+|+|+. |+++|||+.+. +....|.+|++-|.+.++|-||+.|++ ..|+.|||+|.+   ..++.+
T Consensus       132 E~l~fHpTaDgil~s~a~-g~v~i~D~stq-k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR---a~~~pi  206 (1012)
T KOG1445|consen  132 ECLRFHPTADGILASGAH-GSVYITDISTQ-KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR---ASMEPI  206 (1012)
T ss_pred             EEeecccCcCceEEeccC-ceEEEEEcccC-ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc---cCCCcc
Confidence            7777754  778888876 89999999886 466788899999999999999999999 558999999987   478888


Q ss_pred             eeecCCCC
Q 047036          502 TGFSGRMG  509 (634)
Q Consensus       502 ~gF~gh~~  509 (634)
                      +..++|-+
T Consensus       207 Q~te~H~~  214 (1012)
T KOG1445|consen  207 QTTEGHGG  214 (1012)
T ss_pred             cccccccc
Confidence            88888876

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.79  E-value=2.9e-08  Score=106.38  Aligned_cols=131  Identities=13%  Similarity=0.215  Sum_probs=97.0

Q ss_pred             EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC---C--ceE---EecccCCCCccccccccccc
Q 047036          348 EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR---S--GIV---QNMVKGDSPVLHWTQGHQFS  419 (634)
Q Consensus       348 ~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~---~--~~V---q~l~gh~s~V~~~~~g~~y~  419 (634)
                      .|-.|+.   +..+.|.+.++       ..+|||+.|.-|++|-+...   +  ..|   ..|.+|.             
T Consensus         9 ~wH~~~p---v~s~dfq~n~~-------~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~-------------   65 (434)
T KOG1009|consen    9 SWHDHEP---VYSVDFQKNSL-------NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT-------------   65 (434)
T ss_pred             EecCCCc---eEEEEeccCcc-------cceecccCccceeeeeeeecCCCCCceeEEEeecccCCc-------------
Confidence            3545553   45668877632       38999999999999987642   1  112   1222222             


Q ss_pred             cCcceEEEEECCCC-eEEEEECCCcEEEEecc--------c-----c--ccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          420 RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT--------S-----M--RQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       420 ~~~~fssva~s~dG-~IASGS~DGtIRLWD~~--------t-----~--r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                        -.+.++-|+|+| .||||+.+|.|-||-..        +     .  ...+..+.||.+.|..++++||+.+|++ ++
T Consensus        66 --~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~  143 (434)
T KOG1009|consen   66 --RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV  143 (434)
T ss_pred             --ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence              235788999999 89999999999999754        1     0  0123467799999999999999999999 99


Q ss_pred             CCcEEEEEcccccCCCCeeeeecCC
Q 047036          483 DTYLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       483 D~tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                      |+++++||+.    .|+...++..|
T Consensus       144 dns~~l~Dv~----~G~l~~~~~dh  164 (434)
T KOG1009|consen  144 DNSVRLWDVH----AGQLLAILDDH  164 (434)
T ss_pred             cceEEEEEec----cceeEeecccc
Confidence            9999999996    67777777665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.79  E-value=1.9e-07  Score=97.02  Aligned_cols=185  Identities=12%  Similarity=0.200  Sum_probs=116.0

Q ss_pred             cEEEEeCCC--CcEE--EEEeccCCCcc-eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC--ceEEecccCC
Q 047036          334 GVQQLDIET--GKIV--TEWKFEKDGTD-ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGD  406 (634)
Q Consensus       334 TIrlWDleT--GK~V--~~lkgH~~~V~-I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~  406 (634)
                      .+|+|-+..  +++.  ..+..|++.-. -++.+|.    ...+++ .+|.+.|-|-|+.+||+.++.  .+-..|..|.
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFD----Wne~dp-~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD  196 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFD----WNEVDP-NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD  196 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccc----cccCCc-ceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence            699999863  3321  22333332100 0122332    122333 699999999999999999852  1222344455


Q ss_pred             CCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccc---cCCCCCeEEEEECCCC-CEEEE
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAF---PGLGSPITHVDVTYDG-KWILG  480 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L---~GH~d~ItsVdfSpDG-k~LlS  480 (634)
                      ..               +.-++|..+|  .+||.|.||.+|+||++... -.|.+   |.-..|...|++++.- +|+|+
T Consensus       197 KE---------------V~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymAT  260 (364)
T KOG0290|consen  197 KE---------------VYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMAT  260 (364)
T ss_pred             cc---------------eeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhh
Confidence            44               4567888876  58999999999999987642 22222   2225677888888644 67777


Q ss_pred             -EcC-CcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEc-C
Q 047036          481 -TTD-TYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATV-G  557 (634)
Q Consensus       481 -S~D-~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtSt-g  557 (634)
                       .+| +.|.|.|++.   -+..+..+.+|.+..                  +.+...|..          ..+|+|+. |
T Consensus       261 f~~dS~~V~iLDiR~---P~tpva~L~~H~a~V------------------NgIaWaPhS----------~~hictaGDD  309 (364)
T KOG0290|consen  261 FAMDSNKVVILDIRV---PCTPVARLRNHQASV------------------NGIAWAPHS----------SSHICTAGDD  309 (364)
T ss_pred             hhcCCceEEEEEecC---CCcceehhhcCcccc------------------cceEecCCC----------CceeeecCCc
Confidence             776 5688889884   455566666666522                  335555541          24787765 5


Q ss_pred             CeEEEEeChhhhc
Q 047036          558 KFSVIWDFQQVKN  570 (634)
Q Consensus       558 ~~viiWdl~~v~~  570 (634)
                      --+.|||+.++-+
T Consensus       310 ~qaliWDl~q~~~  322 (364)
T KOG0290|consen  310 CQALIWDLQQMPR  322 (364)
T ss_pred             ceEEEEecccccc
Confidence            5566999998887

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.78  E-value=1.3e-07  Score=110.49  Aligned_cols=188  Identities=10%  Similarity=0.023  Sum_probs=127.1

Q ss_pred             CCcEEEeeeCCCeEEEecCeeeEEEc-cCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          255 GVQSLTLGALDNSFLVSDLGLQVYRN-YNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       255 ~~~~LavG~~D~sfvv~G~~igV~k~-~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      .+..++++..+++.+++..+-+..-. ...+ +    ...+..   .-.+.++|+....        .++..=      +
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~-e----r~~l~~---~~~~g~s~~~~~i--------~~gsv~------~  155 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSD-E----RCTLYS---SLIIGDSAEELYI--------ASGSVF------G  155 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCC-c----eEEEEe---EEEEeccCcEEEE--------Eecccc------c
Confidence            34688888888999998865554322 1211 1    111111   0233344554332        223221      5


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      .|.+|+..--+.-..+.||.+.+ +. +.++.|        |..++|.|+|++||+|++.++....-+.-||+.+     
T Consensus       156 ~iivW~~~~dn~p~~l~GHeG~i-F~-i~~s~d--------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----  220 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLKGHEGSI-FS-IVTSLD--------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----  220 (967)
T ss_pred             cEEEEeccccCCcceecccCCce-EE-EEEccC--------CcEEEEEecCcceeeeecccccccCcccccccce-----
Confidence            79999986222222699999975 24 377777        7899999999999999999875432133345443     


Q ss_pred             cccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCC-CCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          414 QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLG-SPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~-d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                                +..+++.|+ +|+++|.|.+.|+|+....  ....+.+|. .-|+.+++.++--++++ +.|++|++||.
T Consensus       221 ----------vw~~~~~~n-~i~t~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  221 ----------VWACCFLPN-RIITVGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             ----------eEEEEeccc-eeEEeccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence                      345577777 9999999999999987652  344666765 57999999999999999 99999999996


Q ss_pred             c
Q 047036          492 L  492 (634)
Q Consensus       492 ~  492 (634)
                      .
T Consensus       288 ~  288 (967)
T KOG0974|consen  288 N  288 (967)
T ss_pred             h
Confidence            5

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=1.6e-06  Score=95.44  Aligned_cols=140  Identities=16%  Similarity=0.150  Sum_probs=84.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-C--eEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-N--RLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~--tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|++||+.+|++.+-..++. .+  ...+|+||        |+.|+..+.+ +  .|+++|+.++.  ++.+..+    
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~-~~--~~~~wSPD--------G~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~----  329 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRS-NN--TEPTWFPD--------SQNLAYTSDQAGRPQVYKVNINGGA--PQRITWE----  329 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCC-Cc--CceEECCC--------CCEEEEEeCCCCCceEEEEECCCCC--eEEeecC----
Confidence            369999999998765544443 22  34599999        5667666654 4  45555665542  2333211    


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                 .....+.+++|+| +||..+.+   ..|.+||+.+++ . ..|... ....+..|||||++|+. +.++
T Consensus       330 -----------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        330 -----------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLTDT-FLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             -----------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence                       0112356789999 67766543   358899987753 3 333321 23457889999999998 7665


Q ss_pred             c---EEEEEcccccCCCCeeeeecCCC
Q 047036          485 Y---LILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       485 t---IrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      .   |.+|++     +|.....+.+|.
T Consensus       396 ~~~~l~~~~~-----~G~~~~~l~~~~  417 (429)
T PRK03629        396 MGSVLNLVST-----DGRFKARLPATD  417 (429)
T ss_pred             CceEEEEEEC-----CCCCeEECccCC
Confidence            4   555564     455544454443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=1.5e-07  Score=100.72  Aligned_cols=137  Identities=14%  Similarity=0.166  Sum_probs=107.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccC---CC----ccee--EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc
Q 047036          333 PGVQQLDIETGKIVTEWKFEK---DG----TDIT--MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~---~~----V~I~--vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~  403 (634)
                      +-+.+||+++++  +.|.+-.   +.    |+|+  -..|-|.      .+...+|++..=+.||++|+|.++.+|..+.
T Consensus       173 n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g------~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd  244 (412)
T KOG3881|consen  173 NELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEG------SPNYKFATITRYHQVRLYDTRHQRRPVAQFD  244 (412)
T ss_pred             cceeeeecccce--eeeeccCCCCccccceeeeeeccceecCC------CCCceEEEEecceeEEEecCcccCcceeEec
Confidence            469999999884  4454321   11    1121  1234332      1146899999999999999998877777663


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                                    | ..++++|++..|+| .|++|-.-|.+..||.++++-....|.|..+.|++|-..|.+++||+ +
T Consensus       245 --------------~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  245 --------------F-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             --------------c-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec
Confidence                          1 34568999999999 79999999999999998876455568999999999999999999999 9


Q ss_pred             cCCcEEEEEcc
Q 047036          482 TDTYLILICTL  492 (634)
Q Consensus       482 ~D~tIrLWD~~  492 (634)
                      .|.||||+|+.
T Consensus       310 LDRyvRIhD~k  320 (412)
T KOG3881|consen  310 LDRYVRIHDIK  320 (412)
T ss_pred             cceeEEEeecc
Confidence            99999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.74  E-value=2.4e-08  Score=114.19  Aligned_cols=150  Identities=11%  Similarity=0.088  Sum_probs=108.0

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      +..-..+++..+..|+.+++|      ..+++|..+|+.++....||...+  +-.+++..        +-.+++||.|+
T Consensus       191 naVyca~fDrtg~~Iitgsdd------~lvKiwS~et~~~lAs~rGhs~di--tdlavs~~--------n~~iaaaS~D~  254 (1113)
T KOG0644|consen  191 NAVYCAIFDRTGRYIITGSDD------RLVKIWSMETARCLASCRGHSGDI--TDLAVSSN--------NTMIAAASNDK  254 (1113)
T ss_pred             hheeeeeeccccceEeecCcc------ceeeeeeccchhhhccCCCCcccc--chhccchh--------hhhhhhcccCc
Confidence            344455678888899999876      689999999999999999999864  44455544        45899999999


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccc---cc-C
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTA---FP-G  461 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~---L~-G  461 (634)
                      .|++|-++.+. +|..|.||.+.               +++++|+|-.   +.|.||++|+||.+- ...++.   +. .
T Consensus       255 vIrvWrl~~~~-pvsvLrghtga---------------vtaiafsP~~---sss~dgt~~~wd~r~-~~~~y~prp~~~~  314 (1113)
T KOG0644|consen  255 VIRVWRLPDGA-PVSVLRGHTGA---------------VTAIAFSPRA---SSSDDGTCRIWDARL-EPRIYVPRPLKFT  314 (1113)
T ss_pred             eEEEEecCCCc-hHHHHhccccc---------------eeeeccCccc---cCCCCCceEeccccc-cccccCCCCCCcc
Confidence            99999999754 56778887765               4788888753   889999999999761 001111   11 1


Q ss_pred             CCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          462 LGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      -++-+-++-|-..|.-.++ +.|+.-+.|..
T Consensus       315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  315 EKDLVDSILFENNGDRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             cccceeeeeccccccccccccCCcccccchh
Confidence            2345566666666666666 66666666643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.74  E-value=1.4e-08  Score=110.28  Aligned_cols=156  Identities=15%  Similarity=0.194  Sum_probs=115.1

Q ss_pred             EEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCC
Q 047036          292 VRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQ  371 (634)
Q Consensus       292 ~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q  371 (634)
                      +++..+..+.-..|-|.+-+|         ++.++.     +-++.-|+.+|++|..+..-.+.+  .|.+-+|-     
T Consensus       204 HClk~~~~v~rLeFLPyHfLL---------~~~~~~-----G~L~Y~DVS~GklVa~~~t~~G~~--~vm~qNP~-----  262 (545)
T KOG1272|consen  204 HCLKRHIRVARLEFLPYHFLL---------VAASEA-----GFLKYQDVSTGKLVASIRTGAGRT--DVMKQNPY-----  262 (545)
T ss_pred             eehhhcCchhhhcccchhhee---------eecccC-----CceEEEeechhhhhHHHHccCCcc--chhhcCCc-----
Confidence            355544444556677776443         333332     799999999999999998877765  46677775     


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc
Q 047036          372 LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT  450 (634)
Q Consensus       372 ~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~  450 (634)
                         +-.+-+|...|+|-+|-|.++..+|+.| .|.++               ++++|+.++| |+|+.+.|..|++||++
T Consensus       263 ---NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~---------------V~siAv~~~G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  263 ---NAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGP---------------VSSIAVDRGGRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             ---cceEEEcCCCceEEecCCCCcchHHHHH-hcCCC---------------cceEEECCCCcEEeecccccceeEeeec
Confidence               5688999999999999999877665544 46554               5899999999 89999999999999987


Q ss_pred             ccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          451 SMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                      +.++..+...  .-+...|+||.-|- ||.+.-..|.||-
T Consensus       324 ~~~ql~t~~t--p~~a~~ls~Sqkgl-LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  324 NFYQLHTYRT--PHPASNLSLSQKGL-LALSYGDHVQIWK  360 (545)
T ss_pred             cccccceeec--CCCccccccccccc-eeeecCCeeeeeh
Confidence            7543322222  24678899998774 4447888999994

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.74  E-value=9.8e-08  Score=112.85  Aligned_cols=135  Identities=19%  Similarity=0.289  Sum_probs=89.3

Q ss_pred             EeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036          338 LDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ  417 (634)
Q Consensus       338 WDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~  417 (634)
                      |.++ |.+|..+.-|...|. .+ +.++.    +   +.+++|||+|||||+||.|.-..-..+.   .+ .+      .
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~-k~-a~s~~----~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~---rS-~l------t 1093 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVI-KL-AVSSE----H---TSLFVSGSDDGTVKVWNLRKLEGEGGSA---RS-EL------T 1093 (1431)
T ss_pred             CCcc-ceEeehhhhcccccc-ce-eecCC----C---CceEEEecCCceEEEeeehhhhcCccee---ee-eE------E
Confidence            8887 999999999999873 55 44443    0   4799999999999999998421000000   00 01      1


Q ss_pred             cc-cCcceEEEEECCCC-eEEEEECCCcEEEEeccc--------------------------------------------
Q 047036          418 FS-RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS--------------------------------------------  451 (634)
Q Consensus       418 y~-~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t--------------------------------------------  451 (634)
                      |. .+..+.++..-+.| ++|+|+.||.|++.++.-                                            
T Consensus      1094 ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred             EeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc
Confidence            22 34456666665666 677777777777665532                                            


Q ss_pred             ---------cccccc-ccc-CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036          452 ---------MRQAKT-AFP-GLGSPITHVDVTYDGKWILG-TTDTYLILICTLF  493 (634)
Q Consensus       452 ---------~r~akt-~L~-GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~  493 (634)
                               .+.+-+ .++ .| +.|++++++|-|.|++. |..|.+.|||+++
T Consensus      1174 ~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHDAWRLKNQLRH-GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             ceEEecchhhhhHHhhhcCccc-cceeEEEecCCceEEEEecCCceEEEEEeec
Confidence                     110000 011 23 46999999999999999 8999999999986

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=2.4e-07  Score=102.38  Aligned_cols=43  Identities=26%  Similarity=0.373  Sum_probs=38.4

Q ss_pred             ceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCceeeeeccCC
Q 047036          584 SCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGR  633 (634)
Q Consensus       584 ~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~~  633 (634)
                      .-|||+|.+|...|+     ++||.||.+  ..||||+|+||.+++.++.
T Consensus       579 ~~~~Yri~r~~~~v~-----adnf~fg~d--s~Viv~l~dDv~~v~~~s~  621 (644)
T KOG2395|consen  579 KHYSYRIRRYLALVV-----ADNFEFGED--SIVIVALPDDVFKVSVRSL  621 (644)
T ss_pred             Ccchhhhhhhcccee-----EeeEEecCC--ceEEEecccchhhhccccc
Confidence            468999999999988     899999964  7999999999999999753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.72  E-value=1.9e-07  Score=97.05  Aligned_cols=191  Identities=12%  Similarity=0.061  Sum_probs=126.0

Q ss_pred             EEecCeeeEEEccCCc--eecceeEEEecCCCCCcccccCcceeeEEe-CCcceEEecCCCCCCCCCCcEEEEeCCCCcE
Q 047036          269 LVSDLGLQVYRNYNRG--IHNKGVSVRFDGGSSKIGSNSTPKKALLMR-GETNMMLMSPLKDGKPQAPGVQQLDIETGKI  345 (634)
Q Consensus       269 vv~G~~igV~k~~~~g--l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~-~D~~mllsss~d~~~~~~~TIrlWDleTGK~  345 (634)
                      ...|+-+++|+...+.  ++-.   ..+..+  +++....|-...-.+ -|-++|.+++-|      .|+-+||+++|..
T Consensus       117 ATs~D~LRlWri~~ee~~~~~~---~~L~~~--kns~~~aPlTSFDWne~dp~~igtSSiD------TTCTiWdie~~~~  185 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEESRVELQ---SVLNNN--KNSEFCAPLTSFDWNEVDPNLIGTSSID------TTCTIWDIETGVS  185 (364)
T ss_pred             hcccCeEEEEeccCcCCceehh---hhhccC--cccccCCcccccccccCCcceeEeeccc------CeEEEEEEeeccc
Confidence            3457888999975422  2111   112222  234444455444333 567788888886      7999999999844


Q ss_pred             ---EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCc
Q 047036          346 ---VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGT  422 (634)
Q Consensus       346 ---V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~  422 (634)
                         -..|-.|...|.  -++|...+       -+.+||.+.||+||++|+|....  .++..- ++          ....
T Consensus       186 ~~vkTQLIAHDKEV~--DIaf~~~s-------~~~FASvgaDGSvRmFDLR~leH--STIIYE-~p----------~~~~  243 (364)
T KOG0290|consen  186 GTVKTQLIAHDKEVY--DIAFLKGS-------RDVFASVGADGSVRMFDLRSLEH--STIIYE-DP----------SPST  243 (364)
T ss_pred             cceeeEEEecCccee--EEEeccCc-------cceEEEecCCCcEEEEEeccccc--ceEEec-CC----------CCCC
Confidence               556999999873  44888642       36899999999999999997532  111100 00          1123


Q ss_pred             ceEEEEECCCC--eEEE-EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCE-EEE-EcCCcEEEEEcc
Q 047036          423 NFQCFASTGDG--SIVV-GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW-ILG-TTDTYLILICTL  492 (634)
Q Consensus       423 ~fssva~s~dG--~IAS-GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~-LlS-S~D~tIrLWD~~  492 (634)
                      ++.-++.++..  ++|+ +-....|-+-|++..-.+...|.+|+.+|++|++.|-.+- |++ +.|..+.|||+.
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            34444555433  6666 4455688899976543466789999999999999997765 555 678999999975

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2e-06  Score=94.41  Aligned_cols=129  Identities=16%  Similarity=0.090  Sum_probs=83.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCe--EEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNR--LCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~t--IklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|++||+.+|+.. .+..+...+  ...+|+||        |..| ++.+.++.  |++||+.++.  ++.|..+..  
T Consensus       226 ~~i~~~dl~~g~~~-~l~~~~g~~--~~~~~SPD--------G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~--  290 (435)
T PRK05137        226 PRVYLLDLETGQRE-LVGNFPGMT--FAPRFSPD--------GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPA--  290 (435)
T ss_pred             CEEEEEECCCCcEE-EeecCCCcc--cCcEECCC--------CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCC--
Confidence            68999999998763 444444433  23489999        4444 56666655  8888988754  244432211  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC-
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD-  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D-  483 (634)
                                   ...+.+++||| +||..|. +|  .|.+||+.++. . +.+..+...+....|||||++|+. +.+ 
T Consensus       291 -------------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~  355 (435)
T PRK05137        291 -------------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-P-RRISFGGGRYSTPVWSPRGDLIAFTKQGG  355 (435)
T ss_pred             -------------ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-e-EEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence                         12345789999 6877764 33  68888877642 3 334334556778899999999987 443 


Q ss_pred             --CcEEEEEc
Q 047036          484 --TYLILICT  491 (634)
Q Consensus       484 --~tIrLWD~  491 (634)
                        ..|.+||+
T Consensus       356 ~~~~i~~~d~  365 (435)
T PRK05137        356 GQFSIGVMKP  365 (435)
T ss_pred             CceEEEEEEC
Confidence              35777774

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2.2e-06  Score=94.17  Aligned_cols=130  Identities=16%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCC--eEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDN--RLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~--tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|++||+.+|+... +..+...+  ...+|+||        |+.| ++.+.++  .|++||+.++.  ++.+..|..  
T Consensus       228 ~~l~~~dl~~g~~~~-l~~~~g~~--~~~~~SpD--------G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~--  292 (433)
T PRK04922        228 SAIYVQDLATGQREL-VASFRGIN--GAPSFSPD--------GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFG--  292 (433)
T ss_pred             cEEEEEECCCCCEEE-eccCCCCc--cCceECCC--------CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCC--
Confidence            579999999987643 22222211  23489999        4444 5656555  59999998754  234432211  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEEC-CCc--EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGK--IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGt--IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                   .....+++|+| +|+.+|. +|.  |.++|+.+++ . ..+..++....+++|||||++|+. +.++
T Consensus       293 -------------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~  357 (433)
T PRK04922        293 -------------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-A-ERLTFQGNYNARASVSPDGKKIAMVHGSG  357 (433)
T ss_pred             -------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCC-e-EEeecCCCCccCEEECCCCCEEEEEECCC
Confidence                         12345789999 6877764 455  6666765542 2 223334455668999999999987 4432


Q ss_pred             ---cEEEEEcc
Q 047036          485 ---YLILICTL  492 (634)
Q Consensus       485 ---tIrLWD~~  492 (634)
                         .|.+||+.
T Consensus       358 ~~~~I~v~d~~  368 (433)
T PRK04922        358 GQYRIAVMDLS  368 (433)
T ss_pred             CceeEEEEECC
Confidence               58899964

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.69  E-value=1.8e-06  Score=90.77  Aligned_cols=242  Identities=17%  Similarity=0.225  Sum_probs=147.3

Q ss_pred             CcEEEeee-CCCe-EEE-ecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcce-EEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNS-FLV-SDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNM-MLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~s-fvv-~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~m-llsss~d~~~~~  331 (634)
                      .+.|.|.+ -|-| |.+ .....++|...+=+.   .....+..    .|  +. .-.||+.-  |+ .|.++....+.-
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke---~~~r~~~~----~G--~~-~veMLfR~--N~laLVGGg~~pky~   73 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKE---SASRQFID----GG--FK-IVEMLFRS--NYLALVGGGSRPKYP   73 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhh---hhhhcccc----Cc--hh-hhhHhhhh--ceEEEecCCCCCCCC
Confidence            45777888 4665 444 346777788655210   01111111    22  22 22456643  33 334444322333


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      -+.|.+||=...++|.++.....   |..+.+.++          .|+. --.++|++|..-..-+.+..+.--..|   
T Consensus        74 pNkviIWDD~k~~~i~el~f~~~---I~~V~l~r~----------riVv-vl~~~I~VytF~~n~k~l~~~et~~NP---  136 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFNSE---IKAVKLRRD----------RIVV-VLENKIYVYTFPDNPKLLHVIETRSNP---  136 (346)
T ss_pred             CceEEEEecccCcEEEEEEeccc---eeeEEEcCC----------eEEE-EecCeEEEEEcCCChhheeeeecccCC---
Confidence            45799999888999999988764   345577775          3444 357899999875321112222100111   


Q ss_pred             cccccccccCcceEEEEECCCC-eEEE-EECCCcEEEEecccccc-ccccccCCCCCeEEEEECCCCCEEEE-EcCCc-E
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKTSMRQ-AKTAFPGLGSPITHVDVTYDGKWILG-TTDTY-L  486 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~t~r~-akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t-I  486 (634)
                                .-..+++.+.+- .||- |-.-|.|+|=|+...+. +-..+++|...|.+|+++-+|..||+ |..+| |
T Consensus       137 ----------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI  206 (346)
T KOG2111|consen  137 ----------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI  206 (346)
T ss_pred             ----------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence                      113444444343 4554 56779999999865321 23568899999999999999999999 88777 8


Q ss_pred             EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE-cCCeEEEEeC
Q 047036          487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDF  565 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl  565 (634)
                      ||||+.    +|..+..|..-..              +++.  ..++|+|+           ..+|++| .-+++-|+.+
T Consensus       207 RIFdt~----~g~~l~E~RRG~d--------------~A~i--y~iaFSp~-----------~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  207 RIFDTE----DGTLLQELRRGVD--------------RADI--YCIAFSPN-----------SSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEEcC----CCcEeeeeecCCc--------------hheE--EEEEeCCC-----------ccEEEEEcCCCeEEEEEe
Confidence            999986    7888877764332              1111  35777777           2566664 5577889999


Q ss_pred             hh
Q 047036          566 QQ  567 (634)
Q Consensus       566 ~~  567 (634)
                      +.
T Consensus       256 ~~  257 (346)
T KOG2111|consen  256 RD  257 (346)
T ss_pred             ec
Confidence            75

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.68  E-value=3.4e-07  Score=101.88  Aligned_cols=148  Identities=14%  Similarity=0.205  Sum_probs=114.8

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      +-.+..|..||+.|-..      +.|-++++..|++-.++.  .|.+.|+ ++ ..+.+        -..|.|++.|+.+
T Consensus        63 ~~~~s~~t~~lvlgt~~------g~v~~ys~~~g~it~~~st~~h~~~v~-~~-~~~~~--------~~ciyS~~ad~~v  126 (541)
T KOG4547|consen   63 AKKASLDTSMLVLGTPQ------GSVLLYSVAGGEITAKLSTDKHYGNVN-EI-LDAQR--------LGCIYSVGADLKV  126 (541)
T ss_pred             HhhccCCceEEEeecCC------ccEEEEEecCCeEEEEEecCCCCCcce-ee-ecccc--------cCceEecCCceeE
Confidence            44567788888888664      689999999999999997  5777663 22 22322        3589999999999


Q ss_pred             EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      ..|++.... ++....               .....++++|.+||| .+++||  ++|++||..+. ....+|+||+.||
T Consensus       127 ~~~~~~~~~-~~~~~~---------------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v  187 (541)
T KOG4547|consen  127 VYILEKEKV-IIRIWK---------------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPV  187 (541)
T ss_pred             EEEecccce-eeeeec---------------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcce
Confidence            999998753 222221               123346788999998 678886  68999999996 4788999999999


Q ss_pred             EEEEECCC-----CCEEEE--EcCCcEEEEEcc
Q 047036          467 THVDVTYD-----GKWILG--TTDTYLILICTL  492 (634)
Q Consensus       467 tsVdfSpD-----Gk~LlS--S~D~tIrLWD~~  492 (634)
                      +++.|..+     |.++++  ..+..|.+|-+.
T Consensus       188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            99999999     999998  457888888765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=6.7e-06  Score=90.40  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             CcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|++||+.+|+..+-  +.++.     ...+|+||        |..| ++.+.++...+|.+......++.+..|..  
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~-----~~~~~SPD--------G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~--  284 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSN-----SAPAWSPD--------GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG--  284 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCc-----cceEECCC--------CCEEEEEEccCCCceEEEEECCCCCcEECCCCCC--
Confidence            4699999999976432  33332     23589999        4555 46777877666654322222344432211  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEec--cccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSK--TSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~--~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                   ...+.+++||| +|+..|. +|...||..  .+++ . ..+..++......+|||||++|+. +.++
T Consensus       285 -------------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        285 -------------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-A-QRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             -------------CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-e-EEEecCCCCcCceEECCCCCEEEEEEccC
Confidence                         11345689999 6776654 567777764  3332 2 222223344567899999999997 5443


Q ss_pred             ---cEEEEEcc
Q 047036          485 ---YLILICTL  492 (634)
Q Consensus       485 ---tIrLWD~~  492 (634)
                         .|.+||+.
T Consensus       350 g~~~I~v~d~~  360 (427)
T PRK02889        350 GAFKLYVQDLA  360 (427)
T ss_pred             CcEEEEEEECC
Confidence               69999964

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.65  E-value=3.4e-07  Score=107.01  Aligned_cols=159  Identities=12%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCccee--EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDIT--MRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~--vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      -.+.+..+.++.       +.+-+||..-+.++.+........-++  +.-++++        .=.+++|+.-+-|.+|+
T Consensus        97 ~e~k~i~l~~~~-------ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--------~~~i~~gsv~~~iivW~  161 (967)
T KOG0974|consen   97 EENKKIALVTSR-------NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--------ELYIASGSVFGEIIVWK  161 (967)
T ss_pred             hhcceEEEEEcC-------ceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--------EEEEEeccccccEEEEe
Confidence            344455556655       369999999888888776544321111  1123333        23799999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVD  470 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVd  470 (634)
                      +..-+..+ .+.||...               +.++.++.+| +||+.|.|.+||||++.+.+....+.=||+..|+.++
T Consensus       162 ~~~dn~p~-~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  162 PHEDNKPI-RLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             ccccCCcc-eecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            98433333 35555443               2356677777 8999999999999999886544335558999999999


Q ss_pred             ECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCC
Q 047036          471 VTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGN  510 (634)
Q Consensus       471 fSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~  510 (634)
                      |.|+  .|++ +.|.|.++|+.     .|+.+..|.+|.+.
T Consensus       226 ~~~n--~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~  259 (967)
T KOG0974|consen  226 FLPN--RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGK  259 (967)
T ss_pred             eccc--eeEEeccceEEEEEec-----ccceehhhhhhhhc
Confidence            9999  7777 99999999974     58888899999873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=2.3e-06  Score=94.04  Aligned_cols=129  Identities=16%  Similarity=-0.002  Sum_probs=86.2

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCC
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                      ..+|++||.. |...+.+..|...+  ...+|+||        |+.|+..+..   ..|++||+.++..  +.+..+.  
T Consensus       183 ~~~l~i~D~~-g~~~~~lt~~~~~v--~~p~wSpD--------g~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~--  247 (433)
T PRK04922        183 RYALQVADSD-GYNPQTILRSAEPI--LSPAWSPD--------GKKLAYVSFERGRSAIYVQDLATGQR--ELVASFR--  247 (433)
T ss_pred             eEEEEEECCC-CCCceEeecCCCcc--ccccCCCC--------CCEEEEEecCCCCcEEEEEECCCCCE--EEeccCC--
Confidence            3579999986 66666777776654  34489999        5677777643   4799999987543  2232111  


Q ss_pred             ccccccccccccCcceEEEEECCCC-eEE-EEECCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc--
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT--  482 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~--  482 (634)
                            +       ...+.+++|+| +|| +.+.+|  .|.+||+.+++  ...+..|.....+++|||||++|+.+.  
T Consensus       248 ------g-------~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        248 ------G-------INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             ------C-------CccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECC
Confidence                  1       12356789999 565 556666  59999988753  345666666667899999999999733  


Q ss_pred             CCcEEEEE
Q 047036          483 DTYLILIC  490 (634)
Q Consensus       483 D~tIrLWD  490 (634)
                      ++...||.
T Consensus       313 ~g~~~iy~  320 (433)
T PRK04922        313 GGRPQIYR  320 (433)
T ss_pred             CCCceEEE
Confidence            34444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.64  E-value=8.3e-07  Score=87.93  Aligned_cols=133  Identities=13%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC
Q 047036          274 GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK  353 (634)
Q Consensus       274 ~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~  353 (634)
                      ...+|.....+...  ..+.+....++...+|+|++..++      ++.+..+      .+|.+||++ ++.+.++..+.
T Consensus        38 ~~~l~~~~~~~~~~--~~i~l~~~~~I~~~~WsP~g~~fa------vi~g~~~------~~v~lyd~~-~~~i~~~~~~~  102 (194)
T PF08662_consen   38 EFELFYLNEKNIPV--ESIELKKEGPIHDVAWSPNGNEFA------VIYGSMP------AKVTLYDVK-GKKIFSFGTQP  102 (194)
T ss_pred             eEEEEEEecCCCcc--ceeeccCCCceEEEEECcCCCEEE------EEEccCC------cccEEEcCc-ccEeEeecCCC
Confidence            45566654433221  222332222345666777653321      3333222      589999997 88888886432


Q ss_pred             CCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEEC
Q 047036          354 DGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAST  430 (634)
Q Consensus       354 ~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s  430 (634)
                        +  ..+.|+|+        |+.+++|+.+   +.|.+||++... .+.+..                 ....+.++++
T Consensus       103 --~--n~i~wsP~--------G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~-----------------~~~~t~~~Ws  152 (194)
T PF08662_consen  103 --R--NTISWSPD--------GRFLVLAGFGNLNGDLEFWDVRKKK-KISTFE-----------------HSDATDVEWS  152 (194)
T ss_pred             --c--eEEEECCC--------CCEEEEEEccCCCcEEEEEECCCCE-Eeeccc-----------------cCcEEEEEEc
Confidence              2  34599999        6788888755   459999999643 333331                 1135788999


Q ss_pred             CCC-eEEEEE------CCCcEEEEeccc
Q 047036          431 GDG-SIVVGS------LDGKIRLYSKTS  451 (634)
Q Consensus       431 ~dG-~IASGS------~DGtIRLWD~~t  451 (634)
                      |+| +||+++      .|+.++||+..+
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEecC
Confidence            999 777765      489999999875

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=2e-06  Score=92.27  Aligned_cols=200  Identities=16%  Similarity=0.090  Sum_probs=124.6

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecce-eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKG-VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~-~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+-|+-| +.+.|++.|   ....||....- +.-++ .-+.+.+|.. .+..|    .+.++-....|++++.+     
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~-~~~k~~KPI~~~~~~H-~SNIF----~L~F~~~N~~~~SG~~~-----  126 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDEL-MVRKTPKPIGVMEHPH-RSNIF----SLEFDLENRFLYSGERW-----  126 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHH-HhhcCCCCceeccCcc-ccceE----EEEEccCCeeEecCCCc-----
Confidence            3455666 567888876   46677765221 11111 0111222210 12222    24455555566677665     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccC--CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          332 APGVQQLDIETGKIVTEWKFEK--DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~--~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                       ++|.+-|++|-+.|..+.-..  +.|  .-++.+|.        .+.+++.+.++.|-+||.|.+...+       +++
T Consensus       127 -~~VI~HDiEt~qsi~V~~~~~~~~~V--Y~m~~~P~--------DN~~~~~t~~~~V~~~D~Rd~~~~~-------~~~  188 (609)
T KOG4227|consen  127 -GTVIKHDIETKQSIYVANENNNRGDV--YHMDQHPT--------DNTLIVVTRAKLVSFIDNRDRQNPI-------SLV  188 (609)
T ss_pred             -ceeEeeecccceeeeeecccCcccce--eecccCCC--------CceEEEEecCceEEEEeccCCCCCC-------cee
Confidence             799999999999888775333  244  44577776        5799999999999999999765322       222


Q ss_pred             cccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc---cccCCCC---CeEEEEECCCCCEEEE-
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT---AFPGLGS---PITHVDVTYDGKWILG-  480 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt---~L~GH~d---~ItsVdfSpDGk~LlS-  480 (634)
                      +.-+      ....|.++.|.|-.  .|++++..+-+-|||++.......   -+.|+..   .-.++-|+|+|..+++ 
T Consensus       189 ~~AN------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  189 LPAN------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             eecC------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            1111      23457888898865  799999999999999764211111   1223333   2368999999999999 


Q ss_pred             EcCCcEEEEEc
Q 047036          481 TTDTYLILICT  491 (634)
Q Consensus       481 S~D~tIrLWD~  491 (634)
                      -.-..-.++|+
T Consensus       263 RR~~~P~~~D~  273 (609)
T KOG4227|consen  263 RRGKCPLYFDF  273 (609)
T ss_pred             hccCCCEEeee
Confidence            66666667775

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=2.1e-06  Score=94.30  Aligned_cols=130  Identities=12%  Similarity=-0.009  Sum_probs=88.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|.+||. .|+..+.+..|...+  ...+|+||        |+.|+..+.+   ..|.+||++++..  ..+...    
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v--~~p~wSPD--------G~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~----  238 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPI--ISPAWSPD--------GTKLAYVSFESKKPVVYVHDLATGRR--RVVANF----  238 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCc--ccceEcCC--------CCEEEEEEccCCCcEEEEEECCCCCE--EEeecC----
Confidence            57999998 477777777777765  34599999        5677776643   4599999987643  222110    


Q ss_pred             cccccccccccCcceEEEEECCCC-eEE-EEECCCcEEEEec--cccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGKIRLYSK--TSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGtIRLWD~--~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                                 .....+.+++||| .|| +.+.+|..+||..  .++  ....|..|...+++.+|||||++|+. +. +
T Consensus       239 -----------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~  305 (427)
T PRK02889        239 -----------KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG  305 (427)
T ss_pred             -----------CCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCC
Confidence                       0112467889999 676 5688888777764  332  23456556666788999999999987 43 4


Q ss_pred             CcEEEEEcc
Q 047036          484 TYLILICTL  492 (634)
Q Consensus       484 ~tIrLWD~~  492 (634)
                      +...||.+.
T Consensus       306 g~~~Iy~~~  314 (427)
T PRK02889        306 GAPQIYRMP  314 (427)
T ss_pred             CCcEEEEEE
Confidence            667777643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=4.7e-06  Score=91.54  Aligned_cols=129  Identities=14%  Similarity=0.016  Sum_probs=88.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC---CCeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD---DNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~---D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|++||.. |...+.+..|...|  ...+|+||        |+.|+..+.   +..|++||++++..  +.+..+..  
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v--~~p~wSpD--------G~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g--  246 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLV--LTPRFSPN--------RQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPG--  246 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCe--EeeEECCC--------CCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCC--
Confidence            589999985 66677788887765  34599999        566776653   47899999987643  23321111  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEE-EEECCCc--EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGK--IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGt--IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                                   ...+.+++||| +|| +.+.+|.  |.+||+.++.  ...|..+...+++.+|||||++|+. +. +
T Consensus       247 -------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~  311 (435)
T PRK05137        247 -------------MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRS  311 (435)
T ss_pred             -------------cccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence                         12456789999 565 5666665  7777887752  3456666667788999999999987 42 2


Q ss_pred             C--cEEEEEc
Q 047036          484 T--YLILICT  491 (634)
Q Consensus       484 ~--tIrLWD~  491 (634)
                      +  .|.+||+
T Consensus       312 g~~~Iy~~d~  321 (435)
T PRK05137        312 GSPQLYVMNA  321 (435)
T ss_pred             CCCeEEEEEC
Confidence            2  4666664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.6e-07  Score=110.57  Aligned_cols=148  Identities=11%  Similarity=0.092  Sum_probs=115.8

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC---eEEEEEcCC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN---RLCQWDMRD  394 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~---tIklWD~R~  394 (634)
                      ..||+++...     +++-+||+..-+.|-.+.-|......+++.|+|+.       ..+|++++.|.   .|.+||+|-
T Consensus       174 qhILAS~s~s-----g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~-------aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  174 SHILASGSPS-----GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH-------ATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             hHHhhccCCC-----CCceeccccCCCcccccccCCCccceeeeeeCCCC-------ceeeeeecCCCCCceeEeecccc
Confidence            3466665543     68999999988888888888775555788999983       35788887764   699999997


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECC-C-CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-D-GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-d-G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS  472 (634)
                      ....++++.+|...|               .++...+ | .+|+|++.|+.|-+|+..++. ....|+.-++++..|.|+
T Consensus       242 assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  242 ASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             cCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeec
Confidence            666778888777654               3344443 3 379999999999999999874 778899999999999999


Q ss_pred             CCCC-EEEE-EcCCcEEEEEccc
Q 047036          473 YDGK-WILG-TTDTYLILICTLF  493 (634)
Q Consensus       473 pDGk-~LlS-S~D~tIrLWD~~~  493 (634)
                      |--- .+++ +.|+.|-|+.+.-
T Consensus       306 pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  306 PRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             CCCcchhhhheeccceeeeeeec
Confidence            9876 4444 9999999998763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.9e-06  Score=92.34  Aligned_cols=197  Identities=17%  Similarity=0.187  Sum_probs=130.0

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCc----EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC--CeE
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGK----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD--NRL  387 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D--~tI  387 (634)
                      ..++.+|+.-++       +.|.+|-++.|-    .+..|..|..   ++.+.-+|..       ...+++|+-.  +-+
T Consensus       113 ~~dg~Litc~~s-------G~l~~~~~k~~d~hss~l~~la~g~g---~~~~r~~~~~-------p~Iva~GGke~~n~l  175 (412)
T KOG3881|consen  113 LADGTLITCVSS-------GNLQVRHDKSGDLHSSKLIKLATGPG---LYDVRQTDTD-------PYIVATGGKENINEL  175 (412)
T ss_pred             hcCCEEEEEecC-------CcEEEEeccCCccccccceeeecCCc---eeeeccCCCC-------CceEecCchhcccce
Confidence            445555555443       569999988543    5566776654   2344445442       2578889999  999


Q ss_pred             EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036          388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS  464 (634)
Q Consensus       388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d  464 (634)
                      ++||+...   .|.+.+.+-+ .+|.+   ...-+-++.+.|.++  . .||+++.-+.+||||.+.+|+....|+-...
T Consensus       176 kiwdle~~---~qiw~aKNvp-nD~L~---LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~  248 (412)
T KOG3881|consen  176 KIWDLEQS---KQIWSAKNVP-NDRLG---LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN  248 (412)
T ss_pred             eeeecccc---eeeeeccCCC-Ccccc---ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence            99999864   3444322211 11111   112223466677665  4 7999999999999999988878888888889


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee-eecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT-GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV  542 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~-gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~  542 (634)
                      +|+++...|+|+.|.+ ..-+.|-.+|++    .|+.+. +|.|-.|    .+|-+...|.|                  
T Consensus       249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tG----sirsih~hp~~------------------  302 (412)
T KOG3881|consen  249 PISSTGLTPSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITG----SIRSIHCHPTH------------------  302 (412)
T ss_pred             cceeeeecCCCcEEEEecccchhheeccc----CceeeccccCCccC----CcceEEEcCCC------------------
Confidence            9999999999999998 778999999987    333322 2333333    12333322221                  


Q ss_pred             ccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          543 TENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       543 t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                             ++|++ +-|+||.|.|++.
T Consensus       303 -------~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  303 -------PVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             -------ceEEeeccceeEEEeeccc
Confidence                   34444 6699999999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=3.4e-07  Score=97.99  Aligned_cols=182  Identities=12%  Similarity=0.059  Sum_probs=122.8

Q ss_pred             EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC----C-ceEEecccCCCCccccccccccccC
Q 047036          347 TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR----S-GIVQNMVKGDSPVLHWTQGHQFSRG  421 (634)
Q Consensus       347 ~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~----~-~~Vq~l~gh~s~V~~~~~g~~y~~~  421 (634)
                      +.+.+|.+-|+  .+.|+.+        ++.|++|++|..+++|.+...    . ++|+.. +|             .+.
T Consensus        50 KD~~~H~GCiN--AlqFS~N--------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~-------------~H~  105 (609)
T KOG4227|consen   50 KDVREHTGCIN--ALQFSHN--------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EH-------------PHR  105 (609)
T ss_pred             hhhhhhccccc--eeeeccC--------CeEEeecCCcceeeeechHHHHhhcCCCCceec-cC-------------ccc
Confidence            34668998764  5589887        689999999999999998631    1 223322 11             133


Q ss_pred             cceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC---CeEEEEECCCCCEEEE-EcCCcEEEEEcccccC
Q 047036          422 TNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS---PITHVDVTYDGKWILG-TTDTYLILICTLFSDK  496 (634)
Q Consensus       422 ~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d---~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~  496 (634)
                      .++.|++|.-.. .|.+|..+++|-+-|+.+. +.+..+ .|.+   .|++++.+|--..+++ |.++.|.+||.+-.  
T Consensus       106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~--  181 (609)
T KOG4227|consen  106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETK-QSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR--  181 (609)
T ss_pred             cceEEEEEccCCeeEecCCCcceeEeeecccc-eeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCC--
Confidence            467899997665 7999999999999998874 333333 3555   8999999999888888 89999999997621  


Q ss_pred             CCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccc
Q 047036          497 DGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHEC  575 (634)
Q Consensus       497 ~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~  575 (634)
                                      |.|..+-+      .+..+.+|..+-|++.+     ..+|++ +.-+.+-+||..+-. ..+..
T Consensus       182 ----------------~~~~~~~~------~AN~~~~F~t~~F~P~~-----P~Li~~~~~~~G~~~~D~R~~~-~~~~~  233 (609)
T KOG4227|consen  182 ----------------QNPISLVL------PANSGKNFYTAEFHPET-----PALILVNSETGGPNVFDRRMQA-RPVYQ  233 (609)
T ss_pred             ----------------CCCCceee------ecCCCccceeeeecCCC-----ceeEEeccccCCCCceeecccc-chHHh
Confidence                            11111111      11235688888898754     255554 555667899986433 22334


Q ss_pred             cccccCCcc
Q 047036          576 YRNQQGLKS  584 (634)
Q Consensus       576 y~~~~~~~~  584 (634)
                      |.+-.||.+
T Consensus       234 ~~~~~~L~~  242 (609)
T KOG4227|consen  234 RSMFKGLPQ  242 (609)
T ss_pred             hhccccCcc
Confidence            445555554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=9.2e-08  Score=106.49  Aligned_cols=146  Identities=13%  Similarity=0.208  Sum_probs=113.5

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ++.+-...++.+..       +.||++|+..+.+|.++......|  +..+++|.        |..|+.|+.|+.++.+|
T Consensus       573 ~FHPs~p~lfVaTq-------~~vRiYdL~kqelvKkL~tg~kwi--S~msihp~--------GDnli~gs~d~k~~WfD  635 (733)
T KOG0650|consen  573 KFHPSKPYLFVATQ-------RSVRIYDLSKQELVKKLLTGSKWI--SSMSIHPN--------GDNLILGSYDKKMCWFD  635 (733)
T ss_pred             EecCCCceEEEEec-------cceEEEehhHHHHHHHHhcCCeee--eeeeecCC--------CCeEEEecCCCeeEEEE
Confidence            34444445555544       469999999999999988777765  56699997        78999999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc----ccc----ccccccCC
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS----MRQ----AKTAFPGL  462 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t----~r~----akt~L~GH  462 (634)
                      +....++.++|.-|...               +++|++.+.- .+||||.||++.+|-..-    +++    ....|+||
T Consensus       636 ldlsskPyk~lr~H~~a---------------vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  636 LDLSSKPYKTLRLHEKA---------------VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             cccCcchhHHhhhhhhh---------------hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            98877777887655443               4667777765 799999999999886321    011    23467899


Q ss_pred             CCC----eEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          463 GSP----ITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       463 ~d~----ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                      .-.    |..+.|+|---||.| +.|++||||
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeecccceEeecccCCCceEEecCCCceEEee
Confidence            877    999999999999999 999999998

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.58  E-value=3.1e-06  Score=96.27  Aligned_cols=167  Identities=15%  Similarity=0.100  Sum_probs=106.4

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcE--EEEE----eccCCCcceeEEEEecCCCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKI--VTEW----KFEKDGTDITMRDITNDTKSSQLDP  374 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~--V~~l----kgH~~~V~I~vvsfsPd~K~~q~~~  374 (634)
                      ....|+|...       ++|+.|..+      |+|-+||+..+..  ...+    -.|...|  ..+.+..+.     . 
T Consensus       246 ~~~~f~p~~p-------~ll~gG~y~------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v--~~vvW~~~~-----~-  304 (555)
T KOG1587|consen  246 TCLKFCPFDP-------NLLAGGCYN------GQVVLWDLRKGSDTPPSGLSALEVSHSEPV--TAVVWLQNE-----H-  304 (555)
T ss_pred             eEEEeccCCc-------ceEEeeccC------ceEEEEEccCCCCCCCcccccccccCCcCe--EEEEEeccC-----C-
Confidence            4555665543       344555443      7999999998776  3222    3466654  344555531     1 


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc
Q 047036          375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~  452 (634)
                      +.-++|+|.||.|+.|+++.-..++..+..  ....  ..+.+.......+++.|.+.-  .+++|+..|.|.-=++.+.
T Consensus       305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~--~~~~--~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLL--ESKK--HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             CCceEEEecCCcEeeeeccccccchhhccc--cccc--ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            245999999999999999864433222210  0000  001122334566888887654  7999999999987555544


Q ss_pred             cccc-------ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          453 RQAK-------TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       453 r~ak-------t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +.+.       ..+..|.++|++|.++|=+.-+.. ++|-+++||...
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence            3222       244568899999999999977665 889999999853

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.48  E-value=2e-06  Score=90.44  Aligned_cols=164  Identities=13%  Similarity=0.080  Sum_probs=122.1

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      ..|...+..+.|+.+|..++.+    |+=.||-|+-.+ -+..++|+-|...|  +.++++|.        .+.|++|+.
T Consensus        10 ~~pitchAwn~drt~iAv~~~~----~evhiy~~~~~~~w~~~htls~Hd~~v--tgvdWap~--------snrIvtcs~   75 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNN----HEVHIYSMLGADLWEPAHTLSEHDKIV--TGVDWAPK--------SNRIVTCSH   75 (361)
T ss_pred             cCceeeeeecCCCceEEeccCC----ceEEEEEecCCCCceeceehhhhCcce--eEEeecCC--------CCceeEccC
Confidence            3577778888999999999875    233344444444 46889999999987  45799997        578999999


Q ss_pred             CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc---ccccc
Q 047036          384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ---AKTAF  459 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~---akt~L  459 (634)
                      |+..++|-.+.++.-..+|.      +       ...+-..+||-.+|.+ .+|+||.-..|-+|-...-+.   .|..-
T Consensus        76 drnayVw~~~~~~~Wkptlv------L-------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik  142 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPTLV------L-------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK  142 (361)
T ss_pred             CCCccccccCCCCeecccee------E-------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC
Confidence            99999999976653222221      0       0122235788889988 799999999999998765211   22233


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccccc
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSD  495 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~  495 (634)
                      ..+...|++|++.|++-.|++ |||...|++.+.+++
T Consensus       143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~  179 (361)
T KOG1523|consen  143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG  179 (361)
T ss_pred             CccccceeeeeccCCcceecccccCcceeEEEEeeec
Confidence            357889999999999999999 999999999987654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.46  E-value=1.1e-05  Score=87.65  Aligned_cols=132  Identities=14%  Similarity=0.190  Sum_probs=89.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|.+.|.+|.+++.++.++.. +. ..+.|+||        |+++++++.|+.|.+||+.+.+ ++.++.         
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~-~h-~~~~~s~D--------gr~~yv~~rdg~vsviD~~~~~-~v~~i~---------   75 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGA-PH-AGLKFSPD--------GRYLYVANRDGTVSVIDLATGK-VVATIK---------   75 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STT-EE-EEEE-TT---------SSEEEEEETTSEEEEEETTSSS-EEEEEE---------
T ss_pred             CEEEEEECCCCeEEEEEcCCCC-ce-eEEEecCC--------CCEEEEEcCCCeEEEEECCccc-EEEEEe---------
Confidence            6899999999999999987654 22 33589999        6789999999999999999865 566653         


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEE-ECCCcEEEEeccccccccccccC-------CCCCeEEEEECCCCC-EEEEEc
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVG-SLDGKIRLYSKTSMRQAKTAFPG-------LGSPITHVDVTYDGK-WILGTT  482 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASG-S~DGtIRLWD~~t~r~akt~L~G-------H~d~ItsVdfSpDGk-~LlSS~  482 (634)
                             .+..-.++++|+|| +|+++ -..+++.++|..+++ ....++.       -...+.+|-.+|.+. ||++-.
T Consensus        76 -------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk  147 (369)
T PF02239_consen   76 -------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK  147 (369)
T ss_dssp             --------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred             -------cCCCcceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence                   12234678999999 66665 479999999998874 5555543       234678999999999 566656


Q ss_pred             C-CcEEEEEcc
Q 047036          483 D-TYLILICTL  492 (634)
Q Consensus       483 D-~tIrLWD~~  492 (634)
                      | +.|.+.|..
T Consensus       148 d~~~I~vVdy~  158 (369)
T PF02239_consen  148 DTGEIWVVDYS  158 (369)
T ss_dssp             TTTEEEEEETT
T ss_pred             cCCeEEEEEec
Confidence            5 556666743

...

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=2.9e-06  Score=98.06  Aligned_cols=130  Identities=21%  Similarity=0.299  Sum_probs=100.4

Q ss_pred             CcEEEEeCCCCcEEEEEe------ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC-CC-c-eEEecc
Q 047036          333 PGVQQLDIETGKIVTEWK------FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD-RS-G-IVQNMV  403 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lk------gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~-~~-~-~Vq~l~  403 (634)
                      ..+++|+++++.  +...      -|.-.  +.+++++|.        ++.+|+|-.||.|.+|---. .. . -.+.  
T Consensus       181 ~~~~~~~v~~~~--~~~~~~~~~~~Htf~--~t~~~~spn--------~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~--  246 (792)
T KOG1963|consen  181 CKIHIYFVPKHT--KHTSSRDITVHHTFN--ITCVALSPN--------ERYLAAGDSDGRILVWRDFGSSDDSETCTL--  246 (792)
T ss_pred             eeEEEEEecccc--eeeccchhhhhhccc--ceeEEeccc--------cceEEEeccCCcEEEEeccccccccccceE--
Confidence            469999998865  2222      24332  467899998        68999999999999995322 11 1 0122  


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                            ++|       +...+.+++|+.+| +|.||+..|.+-+|-+.+++  ++-||-++.||.++.+||||.+.+. .
T Consensus       247 ------lHW-------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  247 ------LHW-------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             ------EEe-------cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEe
Confidence                  223       23457889999998 99999999999999998863  7889999999999999999998877 8


Q ss_pred             cCCcEEEEEc
Q 047036          482 TDTYLILICT  491 (634)
Q Consensus       482 ~D~tIrLWD~  491 (634)
                      .|+.|.|...
T Consensus       312 ~DNqI~li~~  321 (792)
T KOG1963|consen  312 EDNQIHLIKA  321 (792)
T ss_pred             cCceEEEEec
Confidence            8999999975

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.43  E-value=7.5e-06  Score=88.12  Aligned_cols=130  Identities=15%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCC--CeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDD--NRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D--~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      .+|++||+.+|+.... ..+...+  ...+|+||        +..| ++.+.+  ..|++||+.++.  .+.+..+..  
T Consensus       214 ~~i~v~d~~~g~~~~~-~~~~~~~--~~~~~spD--------g~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~--  278 (417)
T TIGR02800       214 PEIYVQDLATGQREKV-ASFPGMN--GAPAFSPD--------GSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPG--  278 (417)
T ss_pred             cEEEEEECCCCCEEEe-ecCCCCc--cceEECCC--------CCEEEEEECCCCCccEEEEECCCCC--EEECCCCCC--
Confidence            5799999999976443 3333332  23589999        4444 455544  469999998653  234432211  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECC-C--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-G--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-G--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                   ...+.+++++| +|+.++.. +  .|.+||+.+++  ...+..++..+..++|||||++|+. +.+.
T Consensus       279 -------------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       279 -------------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             -------------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence                         11234678888 67766653 3  57778876642  3345556677889999999999998 6655


Q ss_pred             ---cEEEEEcc
Q 047036          485 ---YLILICTL  492 (634)
Q Consensus       485 ---tIrLWD~~  492 (634)
                         .|.+||+.
T Consensus       344 ~~~~i~~~d~~  354 (417)
T TIGR02800       344 GGFNIAVMDLD  354 (417)
T ss_pred             CceEEEEEeCC
Confidence               67788854

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.42  E-value=2.8e-05  Score=94.82  Aligned_cols=166  Identities=11%  Similarity=0.132  Sum_probs=100.8

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC---------C-----cceeEEEEecCCCCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD---------G-----TDITMRDITNDTKSSQ  371 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~---------~-----V~I~vvsfsPd~K~~q  371 (634)
                      .|..+.+...++.++++...+      ++|++||+.+|.+ ..+.|...         .     -+ .-++|+|+     
T Consensus       684 ~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P-~GIavspd-----  750 (1057)
T PLN02919        684 SPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVT-RVFSGDGYERNLNGSSGTSTSFAQP-SGISLSPD-----  750 (1057)
T ss_pred             CCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeE-EEEecCCccccCCCCccccccccCc-cEEEEeCC-----
Confidence            465544433355666776554      5899999998865 34433210         0     00 12478888     


Q ss_pred             CCCCC-EEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc---cc----cccc-cccCcceEEEEECCCC-eEEEEECC
Q 047036          372 LDPSE-STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH---WT----QGHQ-FSRGTNFQCFASTGDG-SIVVGSLD  441 (634)
Q Consensus       372 ~~~g~-~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~---~~----~g~~-y~~~~~fssva~s~dG-~IASGS~D  441 (634)
                         +. +.++-+.+++|++||+.+++.  ..+.+ ..++..   ..    .+.- -..-..-..++++++| .+++-+.+
T Consensus       751 ---G~~LYVADs~n~~Irv~D~~tg~~--~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N  824 (1057)
T PLN02919        751 ---LKELYIADSESSSIRALDLKTGGS--RLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN  824 (1057)
T ss_pred             ---CCEEEEEECCCCeEEEEECCCCcE--EEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence               44 566777789999999987542  11211 111000   00    0000 0000112477889998 45667889


Q ss_pred             CcEEEEeccccccccccccCC--------------CCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          442 GKIRLYSKTSMRQAKTAFPGL--------------GSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       442 GtIRLWD~~t~r~akt~L~GH--------------~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +.|++||..++. . .++.|.              -....+|++++||+.+++ +.+++|++||+.
T Consensus       825 ~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        825 HKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            999999987642 2 223222              235689999999998888 899999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.41  E-value=9e-07  Score=97.90  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=69.7

Q ss_pred             EEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE
Q 047036          361 RDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS  439 (634)
Q Consensus       361 vsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS  439 (634)
                      -+|+||        |..||+-|.|+.+||+|..+.. ++-.             .|.|--  -+.|+|+|||| +||+|+
T Consensus       296 f~FS~D--------G~~LA~VSqDGfLRvF~fdt~e-Llg~-------------mkSYFG--GLLCvcWSPDGKyIvtGG  351 (636)
T KOG2394|consen  296 FAFSPD--------GKYLATVSQDGFLRIFDFDTQE-LLGV-------------MKSYFG--GLLCVCWSPDGKYIVTGG  351 (636)
T ss_pred             eeEcCC--------CceEEEEecCceEEEeeccHHH-HHHH-------------HHhhcc--ceEEEEEcCCccEEEecC
Confidence            489999        6799999999999999987532 1111             233321  36899999999 899999


Q ss_pred             CCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036          440 LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       440 ~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS  472 (634)
                      .|--|-+|.....| ....=.||..+|..|+|-
T Consensus       352 EDDLVtVwSf~erR-VVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  352 EDDLVTVWSFEERR-VVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             CcceEEEEEeccce-EEEeccccccceeeEeec
Confidence            99999999987743 666677999999999998

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.37  E-value=1.4e-05  Score=88.74  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=96.4

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |.......++++-++.+-.       +.|++=-+.-.-.+-.|+.|.+.|  -.++++|.        +++|+||+.|..
T Consensus       147 ~v~c~~W~p~S~~vl~c~g-------~h~~IKpL~~n~k~i~WkAHDGii--L~~~W~~~--------s~lI~sgGED~k  209 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG-------GHISIKPLAANSKIIRWRAHDGLV--LSLSWSTQ--------SNIIASGGEDFR  209 (737)
T ss_pred             eeEEEEECCCCCceEEecC-------CeEEEeecccccceeEEeccCcEE--EEeecCcc--------ccceeecCCcee
Confidence            4444455555665555544       357776666555677899999876  34599987        689999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                      .++||.... .+ -+     +      +    .+.++++++++.|+-..|+||. ++.||=.   +         -.+.|
T Consensus       210 fKvWD~~G~-~L-f~-----S------~----~~ey~ITSva~npd~~~~v~S~-nt~R~~~---p---------~~GSi  259 (737)
T KOG1524|consen  210 FKIWDAQGA-NL-FT-----S------A----AEEYAITSVAFNPEKDYLLWSY-NTARFSS---P---------RVGSI  259 (737)
T ss_pred             EEeecccCc-cc-cc-----C------C----hhccceeeeeeccccceeeeee-eeeeecC---C---------Cccce
Confidence            999998642 11 11     1      1    2445789999999977888887 5777311   2         24579


Q ss_pred             EEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          467 THVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       467 tsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      ..|++||||..+++ +.-+.|.+-.+
T Consensus       260 fnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  260 FNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             EEEEEcCCCceeeccccCceEEEeee
Confidence            99999999999999 55666555443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=2.5e-05  Score=90.48  Aligned_cols=199  Identities=14%  Similarity=0.141  Sum_probs=125.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC------
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD------  406 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~------  406 (634)
                      .+|.++-+.||.+++.|.+|...+. + +.+.|..--     -..+++++.||+|++||-+.+. +++++.-+.      
T Consensus        37 ~~V~VyS~~Tg~~i~~l~~~~a~l~-s-~~~~~~~~~-----~~~~~~~sl~G~I~vwd~~~~~-Llkt~~~~~~v~~~~  108 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLEDHTAPLT-S-VIVLPSSEN-----ANYLIVCSLDGTIRVWDWSDGE-LLKTFDNNLPVHALV  108 (792)
T ss_pred             CEEEEEecchHhhhhhcccccCccc-e-eeecCCCcc-----ceEEEEEecCccEEEecCCCcE-EEEEEecCCceeEEE
Confidence            4799999999999999999999873 4 477775210     1467899999999999988642 222221110      


Q ss_pred             ------C-Cccc--cc---------------cccccc------cCcc-------eEEEEECCCCeEEEEECCCcEEEEec
Q 047036          407 ------S-PVLH--WT---------------QGHQFS------RGTN-------FQCFASTGDGSIVVGSLDGKIRLYSK  449 (634)
Q Consensus       407 ------s-~V~~--~~---------------~g~~y~------~~~~-------fssva~s~dG~IASGS~DGtIRLWD~  449 (634)
                            . ++..  +.               ++..+.      ...+       =.++..++.|.++.--.+..|.+|..
T Consensus       109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v  188 (792)
T KOG1963|consen  109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV  188 (792)
T ss_pred             echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe
Confidence                  0 0000  00               000000      0001       14567777887777777788899997


Q ss_pred             cccccccccc-----cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCC
Q 047036          450 TSMRQAKTAF-----PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPL  523 (634)
Q Consensus       450 ~t~r~akt~L-----~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe  523 (634)
                      ....  +.+.     .-|.-+|+++++||+|++||+ -.|+.|++|.-.     |.         .+.+-.+++|...-.
T Consensus       189 ~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~-----~~---------~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  189 PKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF-----GS---------SDDSETCTLLHWHHD  252 (792)
T ss_pred             cccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc-----cc---------ccccccceEEEeccc
Confidence            6521  2211     248888999999999999999 789999999732     10         122334556654422


Q ss_pred             CccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036          524 DSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK  569 (634)
Q Consensus       524 ~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~  569 (634)
                      -    ...++|++.        |  ...+.++..+-+++|.++.-+
T Consensus       253 ~----V~~L~fS~~--------G--~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  253 E----VNSLSFSSD--------G--AYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             c----cceeEEecC--------C--ceEeecccceEEEEEeecCCC
Confidence            1    234677655        3  344555778889999998644

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.36  E-value=3.5e-05  Score=82.96  Aligned_cols=129  Identities=14%  Similarity=0.025  Sum_probs=83.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|++||.. |...+.+..|...+  ...+|+||        |+.|+.++..   ..|++||+.++..  ..+..+..  
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~--~~p~~Spd--------g~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~--  234 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPI--LSPAWSPD--------GQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPG--  234 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCce--ecccCCCC--------CCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCC--
Confidence            579999986 55556666666543  23489999        5667766544   5899999987642  22221111  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEE-EEECCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                                   ...+++++|+| .|+ +.+.++  .|.+||+.++  ....+..|...+.+.+|+|||++|+. +. .
T Consensus       235 -------------~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~  299 (417)
T TIGR02800       235 -------------MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG  299 (417)
T ss_pred             -------------CccceEECCCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCC
Confidence                         12346789998 565 445544  5889998764  23445556666678899999999987 43 3


Q ss_pred             C--cEEEEEc
Q 047036          484 T--YLILICT  491 (634)
Q Consensus       484 ~--tIrLWD~  491 (634)
                      +  .|.+||+
T Consensus       300 g~~~iy~~d~  309 (417)
T TIGR02800       300 GSPQIYMMDA  309 (417)
T ss_pred             CCceEEEEEC
Confidence            3  3555564

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.36  E-value=2.1e-05  Score=88.90  Aligned_cols=206  Identities=17%  Similarity=0.247  Sum_probs=127.8

Q ss_pred             EEEeee-CCCe--EEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          258 SLTLGA-LDNS--FLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       258 ~LavG~-~D~s--fvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      .--++| ||++  +++.|+++-||...+++     ...++.+|+.       -+..+.++.|+.+..+++.|      +.
T Consensus        15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~-----llqtLKgHKD-------tVycVAys~dGkrFASG~aD------K~   76 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAGSRLLVYDTSDGT-----LLQPLKGHKD-------TVYCVAYAKDGKRFASGSAD------KS   76 (1081)
T ss_pred             hheeEECCCCceEEEecCCEEEEEeCCCcc-----cccccccccc-------eEEEEEEccCCceeccCCCc------ee
Confidence            455788 8886  45578999999977665     2335566632       12233444555556666665      57


Q ss_pred             EEEEeCCCCcEEEEEeccCCC-------------------------------------cceeEEEEecCCCCCCCCCCCE
Q 047036          335 VQQLDIETGKIVTEWKFEKDG-------------------------------------TDITMRDITNDTKSSQLDPSES  377 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~-------------------------------------V~I~vvsfsPd~K~~q~~~g~~  377 (634)
                      |.+|...-.-+++ + .|.+.                                     ++++..+++.|        |++
T Consensus        77 VI~W~~klEG~Lk-Y-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--------Gqy  146 (1081)
T KOG1538|consen   77 VIIWTSKLEGILK-Y-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--------GQY  146 (1081)
T ss_pred             EEEecccccceee-e-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC--------CcE
Confidence            7788743211111 1 23332                                     22333455555        789


Q ss_pred             EEEEeCCCeEEEEEcCCCCc-eEEecccCCCC-------------------ccccccccccc----------cCcce--E
Q 047036          378 TFLGLDDNRLCQWDMRDRSG-IVQNMVKGDSP-------------------VLHWTQGHQFS----------RGTNF--Q  425 (634)
Q Consensus       378 laSGS~D~tIklWD~R~~~~-~Vq~l~gh~s~-------------------V~~~~~g~~y~----------~~~~f--s  425 (634)
                      ++.|..++||-+=+.....+ .++.-.|.+++                   |.+|++.-.|-          ....|  .
T Consensus       147 lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~  226 (1081)
T KOG1538|consen  147 LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPC  226 (1081)
T ss_pred             EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCch
Confidence            99999999998865432211 12222222222                   44565432211          12223  4


Q ss_pred             EEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036          426 CFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF  493 (634)
Q Consensus       426 sva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~  493 (634)
                      |+..-++| ++..|+.|+.+++|.+.+.+  .-++.....+|++|.+.|+|++++- ..|+||--+++.+
T Consensus       227 CisYf~NGEy~LiGGsdk~L~~fTR~Gvr--LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  227 CISYFTNGEYILLGGSDKQLSLFTRDGVR--LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             hheeccCCcEEEEccCCCceEEEeecCeE--EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            55556788 99999999999999988764  3445556679999999999999998 6699998887653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=5.1e-05  Score=81.24  Aligned_cols=145  Identities=17%  Similarity=0.172  Sum_probs=94.5

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      .|..-|-.+.|+..++.++-++     ..|++||+.+|..+.- +++-.+   ++++.||||        +..++.+.-|
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gs-----ssi~iWdpdtg~~~pL~~~glgg---~slLkwSPd--------gd~lfaAt~d  259 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGS-----SSIMIWDPDTGQKIPLIPKGLGG---FSLLKWSPD--------GDVLFAATCD  259 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCc-----ceEEEEcCCCCCcccccccCCCc---eeeEEEcCC--------CCEEEEeccc
Confidence            5777777777777777777654     7899999999987764 355443   468899999        7899999999


Q ss_pred             CeEEEEEc-CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccc--------
Q 047036          385 NRLCQWDM-RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMR--------  453 (634)
Q Consensus       385 ~tIklWD~-R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r--------  453 (634)
                      .+.++|.. ++-.+.-..+            +.    . .++..+.+|.| +| .+.+  |.=+||.+.-..        
T Consensus       260 avfrlw~e~q~wt~erw~l------------gs----g-rvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~  320 (445)
T KOG2139|consen  260 AVFRLWQENQSWTKERWIL------------GS----G-RVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRP  320 (445)
T ss_pred             ceeeeehhcccceecceec------------cC----C-ceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCc
Confidence            99999953 3322211111            11    1 35667778887 33 3333  333455543100        


Q ss_pred             ------------cccccccC---CCCCeEEEEECCCCCEEEEEcCCc
Q 047036          454 ------------QAKTAFPG---LGSPITHVDVTYDGKWILGTTDTY  485 (634)
Q Consensus       454 ------------~akt~L~G---H~d~ItsVdfSpDGk~LlSS~D~t  485 (634)
                                  +..+...|   .++++.+|++-|-|.|||.+..+.
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence                        01111122   357899999999999999866544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.26  E-value=0.00013  Score=87.39  Aligned_cols=264  Identities=18%  Similarity=0.186  Sum_probs=152.4

Q ss_pred             CcEEEeeeCCCeEEEecC---eeeEEEccCCceecce--eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGALDNSFLVSDL---GLQVYRNYNRGIHNKG--VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~~D~sfvv~G~---~igV~k~~~~gl~~~~--~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+.+|+-.++.+|.+.|+   .|+||+...  +.+++  +.-.+.-+ + .|   ++...+-+-+.++.++.++.|    
T Consensus      1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys-~-~~---sr~~~vt~~~~~~~~Av~t~D---- 1119 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYS-P-EG---SRVEKVTMCGNGDQFAVSTKD---- 1119 (1431)
T ss_pred             ccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEe-c-cC---CceEEEEeccCCCeEEEEcCC----
Confidence            347777777889999886   555665422  22221  11111100 0 11   122233333445556666544    


Q ss_pred             CCCcEEEEeCCC-------CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc
Q 047036          331 QAPGVQQLDIET-------GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       331 ~~~TIrlWDleT-------GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~  403 (634)
                        |.|++.++..       +.+++...-+..++-+.+.+|....+      ...++-+..-+.|-.||+|+... +..+.
T Consensus      1120 --G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~------S~~lvy~T~~~~iv~~D~r~~~~-~w~lk 1190 (1431)
T KOG1240|consen 1120 --GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ------SHVLVYATDLSRIVSWDTRMRHD-AWRLK 1190 (1431)
T ss_pred             --CeEEEEEccccccccceeeeeecccccCCCceEEeeccccccc------ceeEEEEEeccceEEecchhhhh-HHhhh
Confidence              7899999876       34556666666665445555555422      23788888999999999998642 22221


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc--ccccCCCCCeEEEEECCC---CCE
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK--TAFPGLGSPITHVDVTYD---GKW  477 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak--t~L~GH~d~ItsVdfSpD---Gk~  477 (634)
                                  ++..++ -++++|++|.+ .+++|+.-|.+-|||++- +...  -..| |.-+|+.|...|-   ..+
T Consensus      1191 ------------~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1191 ------------NQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP-ARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred             ------------cCcccc-ceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc-ccCCcceEEeeccCCCCce
Confidence                        122222 37889999988 799999999999999763 2222  2344 4478998887754   357


Q ss_pred             EEE-E--cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036          478 ILG-T--TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA  554 (634)
Q Consensus       478 LlS-S--~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt  554 (634)
                      +++ +  .-+-|-+|+..    +|.+.+.|-..-    ++|-+--..|-........+.-..+.+.  -+   +...+.+
T Consensus      1256 ~vs~~~~~~nevs~wn~~----~g~~~~vl~~s~----~~p~ls~~~Ps~~~~kp~~~~~~~~~~~--~~---~~~~ltg 1322 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNME----TGLRQTVLWASD----GAPILSYALPSNDARKPDSLAGISCGVC--EK---NGFLLTG 1322 (1431)
T ss_pred             EEEecccCCCceeeeecc----cCcceEEEEcCC----CCcchhhhcccccCCCCCcccceeeecc--cC---Cceeeec
Confidence            776 3  57889999986    677777776441    1222211222221110011111222232  11   2245666


Q ss_pred             EcCCeEEEEeChh
Q 047036          555 TVGKFSVIWDFQQ  567 (634)
Q Consensus       555 Stg~~viiWdl~~  567 (634)
                      ++|..|.-||...
T Consensus      1323 gsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTR 1335 (1431)
T ss_pred             CCccceeeccCCC
Confidence            8899999999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.00017  Score=80.24  Aligned_cols=125  Identities=14%  Similarity=0.100  Sum_probs=74.7

Q ss_pred             CcEEEEeCCCCcEE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCe--EEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGKIV--TEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNR--LCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~t--IklWD~R~~~~~Vq~l~gh~s  407 (634)
                      ..|++||+.+|+..  ..+.++..     ...|+||        |+.| ++.+.++.  |++||+.++.  ++.+..+..
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~-----~~~wSPD--------G~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~  306 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGING-----APRFSPD--------GKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRA  306 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcC-----CeeECCC--------CCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCC
Confidence            47999999998753  33444332     2489999        4545 45566664  8888987653  234432111


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                                     .....+++||| +|+..+. +|  .|.++|+.+++ .. .+.-.+....+.+|||||++|+. +.
T Consensus       307 ---------------~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        307 ---------------IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VS-RLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ---------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EEecCCCCCcCeeECCCCCEEEEEEe
Confidence                           12345788998 6765553 44  46666776653 22 22222333456899999999987 44


Q ss_pred             -CCcEEEE
Q 047036          483 -DTYLILI  489 (634)
Q Consensus       483 -D~tIrLW  489 (634)
                       .+...||
T Consensus       370 ~~g~~~I~  377 (448)
T PRK04792        370 TNGKFNIA  377 (448)
T ss_pred             cCCceEEE
Confidence             3444444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.25  E-value=1.5e-06  Score=63.06  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                      ++.+|.+|..+|++|+|+|++++|++ +.|++|+|||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56789999999999999999999999 9999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.00015  Score=79.13  Aligned_cols=129  Identities=14%  Similarity=0.059  Sum_probs=83.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|.++|.. |...+.+..|...+  ...+|+||        |+.|+..+.+   ..|.+||+.++..  +.+....   
T Consensus       179 ~~l~~~d~~-g~~~~~l~~~~~~~--~~p~wSpD--------G~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~---  242 (430)
T PRK00178        179 YTLQRSDYD-GARAVTLLQSREPI--LSPRWSPD--------GKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFE---  242 (430)
T ss_pred             eEEEEECCC-CCCceEEecCCCce--eeeeECCC--------CCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCC---
Confidence            469999998 44456666666543  34589999        5667665543   3699999987642  2332100   


Q ss_pred             cccccccccccCcceEEEEECCCC-eEE-EEECCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                           +       ...+.+++|+| +|| +.+.+|  .|.+||+.+++  .+.|..+...+.+..|||||++|+. +. +
T Consensus       243 -----g-------~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~  308 (430)
T PRK00178        243 -----G-------LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRG  308 (430)
T ss_pred             -----C-------CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCC
Confidence                 1       12346789999 676 455555  68888988752  3446666666778999999999987 43 2


Q ss_pred             C--cEEEEEc
Q 047036          484 T--YLILICT  491 (634)
Q Consensus       484 ~--tIrLWD~  491 (634)
                      +  .|.++|+
T Consensus       309 g~~~iy~~d~  318 (430)
T PRK00178        309 GKPQIYKVNV  318 (430)
T ss_pred             CCceEEEEEC
Confidence            3  3555554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.00021  Score=78.13  Aligned_cols=128  Identities=14%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             CcEEEEeCCCCcEEE--EEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCC--eEEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGKIVT--EWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDN--RLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~--~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~--tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                      ..|++||+.+|+..+  .+.++.     ...+|+||        |+.|+ +.+.++  .|++||+.++.  ++.+..+..
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~-----~~~~~SpD--------G~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~  287 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLN-----GAPAWSPD--------GSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPA  287 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCc-----CCeEECCC--------CCEEEEEEccCCCceEEEEECCCCC--eEEcccCCC
Confidence            479999999997543  233332     23489999        45554 555554  68899998754  234432111


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                                     ......++|+| +|+..+. +|  .|.+||+.+++ ... +...+......+|||||++|+- +.
T Consensus       288 ---------------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~-lt~~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        288 ---------------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AER-VTFVGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             ---------------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE-eecCCCCccceEECCCCCEEEEEEc
Confidence                           12334678998 6766654 33  57777876653 222 2212233456789999999987 44


Q ss_pred             C-C--cEEEEEcc
Q 047036          483 D-T--YLILICTL  492 (634)
Q Consensus       483 D-~--tIrLWD~~  492 (634)
                      + +  .|.+||+.
T Consensus       351 ~~~~~~l~~~dl~  363 (430)
T PRK00178        351 QDGNFHVAAQDLQ  363 (430)
T ss_pred             cCCceEEEEEECC
Confidence            3 2  47777753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.21  E-value=7.4e-06  Score=90.82  Aligned_cols=80  Identities=19%  Similarity=0.208  Sum_probs=63.3

Q ss_pred             eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036          424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      +..+||++|| +||+-|.||.+||||-.++. ....++..-....+|++||||+|||+ +.|.-|-+|...    .++.+
T Consensus       293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~----erRVV  367 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE----ERRVV  367 (636)
T ss_pred             ccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec----cceEE
Confidence            4566899999 89999999999999987753 55555555567899999999999999 999999999875    44444


Q ss_pred             eeecCCC
Q 047036          502 TGFSGRM  508 (634)
Q Consensus       502 ~gF~gh~  508 (634)
                      ..=.||-
T Consensus       368 ARGqGHk  374 (636)
T KOG2394|consen  368 ARGQGHK  374 (636)
T ss_pred             Eeccccc
Confidence            4444443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.19  E-value=3.7e-05  Score=80.45  Aligned_cols=134  Identities=16%  Similarity=0.223  Sum_probs=87.3

Q ss_pred             CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE-EecccCCCCc
Q 047036          333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV-QNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V-q~l~gh~s~V  409 (634)
                      +.+..-+...+.+  +++|++|.-.  +.+..|+..      . .+++++|++|+.+..||+|..+..+ +...-|    
T Consensus       143 G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~------~-pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH----  209 (339)
T KOG0280|consen  143 GSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDK------E-PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH----  209 (339)
T ss_pred             CcEEEEecceeeeeeccccccccee--eeeeecccC------C-CceEEecCCCceEEEEEecCCcceeeecceee----
Confidence            4566555444443  4489999875  356567643      2 3799999999999999999654322 111112    


Q ss_pred             cccccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCC--CEEEEEcCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDG--KWILGTTDT  484 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDG--k~LlSS~D~  484 (634)
                                 ..-+.|+-.+| .+ +||+||.|-.||+||.+.+.+  ..++ ..++.|+.|.-+|-=  +.|++.|=+
T Consensus       210 -----------~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  210 -----------TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--PLFKAKVGGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             -----------ecceEEEecCCCCCceEEEeccccceeeeehhcccC--ccccCccccceEEEEecchhhhHHHHHHHhc
Confidence                       22345555554 56 899999999999999876532  2333 245779999888753  334456666


Q ss_pred             cEEEEEcc
Q 047036          485 YLILICTL  492 (634)
Q Consensus       485 tIrLWD~~  492 (634)
                      -.+|-+..
T Consensus       277 G~ki~~~~  284 (339)
T KOG0280|consen  277 GAKILDSS  284 (339)
T ss_pred             CceEEEec
Confidence            66776653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=2.3e-05  Score=83.86  Aligned_cols=140  Identities=16%  Similarity=0.142  Sum_probs=96.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc---eEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG---IVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~---~Vq~l~gh~s~V  409 (634)
                      .+||++|-.. ++...++..... +|..++|-|-+       +..++.|+.- .|++|-......   .+.....|...|
T Consensus       120 dvVriy~kss-t~pt~Lks~sQr-nvtclawRPls-------aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qv  189 (445)
T KOG2139|consen  120 DVVRIYDKSS-TCPTKLKSVSQR-NVTCLAWRPLS-------ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQV  189 (445)
T ss_pred             cEEEEeccCC-CCCceecchhhc-ceeEEEeccCC-------cceeeeeecc-eeEEEEcCcccccccccccccccchhh
Confidence            4899999876 777777754443 36778999974       3467777754 689996542211   111112222222


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                      +      ++...++++++...+|| .++++| .|..|+|||+.++  .+..|+ --...+.=|-|||||.||.+ ++|..
T Consensus       190 l------~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg--~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav  261 (445)
T KOG2139|consen  190 L------QDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG--QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV  261 (445)
T ss_pred             e------eCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCC--CcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence            2      23344678999999999 788888 4678999999885  344444 22345788999999999998 99999


Q ss_pred             EEEEE
Q 047036          486 LILIC  490 (634)
Q Consensus       486 IrLWD  490 (634)
                      .+||.
T Consensus       262 frlw~  266 (445)
T KOG2139|consen  262 FRLWQ  266 (445)
T ss_pred             eeeeh
Confidence            99993

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=3.3e-05  Score=85.00  Aligned_cols=150  Identities=16%  Similarity=0.188  Sum_probs=99.4

Q ss_pred             ceEEecCCCCCCCCCCcEEEEe-CCCCcEE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLD-IETGKIV--TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWD-leTGK~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      ..|++++.|      +.||+=- +++|.+.  ..+--|.+.|.  .+++-|++       ...+.|++.|+.++-.|+|.
T Consensus       200 ~ti~~~s~d------gqvr~s~i~~t~~~e~t~rl~~h~g~vh--klav~p~s-------p~~f~S~geD~~v~~~Dlr~  264 (559)
T KOG1334|consen  200 RTIVTSSRD------GQVRVSEILETGYVENTKRLAPHEGPVH--KLAVEPDS-------PKPFLSCGEDAVVFHIDLRQ  264 (559)
T ss_pred             cCceecccc------CceeeeeeccccceecceecccccCccc--eeeecCCC-------CCcccccccccceeeeeecc
Confidence            345566554      6788766 3667665  34666888764  55777873       25799999999999999997


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccc------cccccCC---C
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQA------KTAFPGL---G  463 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~a------kt~L~GH---~  463 (634)
                      ... ...+.         +..+.-...+...+++.+|-.  .+|+|+.|--+|+||.+..+..      +.-+|-|   .
T Consensus       265 ~~p-a~~~~---------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d  334 (559)
T KOG1334|consen  265 DVP-AEKFV---------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVED  334 (559)
T ss_pred             CCc-cceee---------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccccc
Confidence            642 11111         011111123456788888864  6999999999999997653211      2222222   1


Q ss_pred             --CCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          464 --SPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       464 --d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                        --|+++.+|.+|.-|++ =.|--|.|+.-.
T Consensus       335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             CcccceeEEecCCccceeeeecccceEEeccc
Confidence              24899999999988887 578889888533

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.15  E-value=0.00034  Score=76.23  Aligned_cols=154  Identities=16%  Similarity=0.229  Sum_probs=93.8

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWD  391 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD  391 (634)
                      ++.|++.++..+.|      +.|.++|+.+++++++.+.....  .. +++|||        |++++++ ...++|.++|
T Consensus        44 ~s~Dgr~~yv~~rd------g~vsviD~~~~~~v~~i~~G~~~--~~-i~~s~D--------G~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   44 FSPDGRYLYVANRD------GTVSVIDLATGKVVATIKVGGNP--RG-IAVSPD--------GKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             -TT-SSEEEEEETT------SEEEEEETTSSSEEEEEE-SSEE--EE-EEE--T--------TTEEEEEEEETTEEEEEE
T ss_pred             ecCCCCEEEEEcCC------CeEEEEECCcccEEEEEecCCCc--ce-EEEcCC--------CCEEEEEecCCCceeEec
Confidence            34445555555443      68999999999999999887663  24 499999        5566655 5799999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC-CcEEEEeccccccccccccCCCCCeEEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-GKIRLYSKTSMRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-GtIRLWD~~t~r~akt~L~GH~d~ItsV  469 (634)
                      .++.+ +++.+.....+.     .   ....++.++..++.. .+++.-.| +.|-+-|....+..+.+....+......
T Consensus       107 ~~tle-~v~~I~~~~~~~-----~---~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen  107 AETLE-PVKTIPTGGMPV-----D---GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             TTT---EEEEEE--EE-T-----T---TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             ccccc-ceeecccccccc-----c---ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            98854 456653211000     0   023356777777776 45555444 7777778655433344444456677889


Q ss_pred             EECCCCCEEEE--EcCCcEEEEEcc
Q 047036          470 DVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       470 dfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                      .|+|||+|++.  -..+.|-++|+.
T Consensus       178 ~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  178 GFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             ccCcccceeeecccccceeEEEeec
Confidence            99999999765  457789999975

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.15  E-value=0.00077  Score=82.59  Aligned_cols=168  Identities=9%  Similarity=0.041  Sum_probs=99.1

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC--C--------------CcceeEEEEecCCC
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK--D--------------GTDITMRDITNDTK  368 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~--~--------------~V~I~vvsfsPd~K  368 (634)
                      ..|.++.+...+..++++...+      ..|+++|+.+|+ |.++.+-.  .              .-+ .-++|+|+. 
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n------~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P-~gVa~dp~~-  694 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTEN------HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSP-WDVCFEPVN-  694 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCC------ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCC-eEEEEecCC-
Confidence            3577765543333456666543      579999998765 55553310  0              001 124888851 


Q ss_pred             CCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccccccc--ccCcceEEEEECCCC-eE-EEEECCCcE
Q 047036          369 SSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQF--SRGTNFQCFASTGDG-SI-VVGSLDGKI  444 (634)
Q Consensus       369 ~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y--~~~~~fssva~s~dG-~I-ASGS~DGtI  444 (634)
                            +.+.++.+.+++|++||+..+.  +..+.+...... . .++..  ..-..-..++++++| +| ++-+.++.|
T Consensus       695 ------g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~-~-~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        695 ------EKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYERN-L-NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             ------CeEEEEECCCCeEEEEECCCCe--EEEEecCCcccc-C-CCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence                  4577788889999999997653  334432211000 0 00000  000123467889987 45 455778999


Q ss_pred             EEEeccccccccc-------------ccc---C-----CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          445 RLYSKTSMRQAKT-------------AFP---G-----LGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       445 RLWD~~t~r~akt-------------~L~---G-----H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |+||+.++. ...             .+.   |     +...-.+|+|++||+..++ +.+++|++||..
T Consensus       765 rv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        765 RALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             EEEECCCCc-EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            999987532 110             000   0     0012369999999998888 889999999964

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.00024  Score=78.66  Aligned_cols=132  Identities=14%  Similarity=0.050  Sum_probs=78.6

Q ss_pred             CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-----CCeEEEEEcCCC--CceEEecc
Q 047036          333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-----DNRLCQWDMRDR--SGIVQNMV  403 (634)
Q Consensus       333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-----D~tIklWD~R~~--~~~Vq~l~  403 (634)
                      ..|++.|+.+|+.  |..+.++..     .-+|+||        |..|+..++     |-.+.+||+..+  +...+...
T Consensus       211 ~~I~~~~l~~g~~~~lt~~~g~~~-----~p~wSPD--------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~  277 (428)
T PRK01029        211 PKIFLGSLENPAGKKILALQGNQL-----MPTFSPR--------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN  277 (428)
T ss_pred             ceEEEEECCCCCceEeecCCCCcc-----ceEECCC--------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeec
Confidence            4799999998864  344555432     2489999        455554442     334555777643  12212211


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEec--cccccccccccCCCCCeEEEEECCCCCEEE
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSK--TSMRQAKTAFPGLGSPITHVDVTYDGKWIL  479 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~--~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll  479 (634)
                      ++            +   ......+++||| +||..+ .+|..+||..  .........|..+...+...+|||||++|+
T Consensus       278 ~~------------~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La  342 (428)
T PRK01029        278 EA------------F---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA  342 (428)
T ss_pred             CC------------C---CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence            10            0   011345789999 677666 5777677753  211012344555566788999999999998


Q ss_pred             E-EcC---CcEEEEEcc
Q 047036          480 G-TTD---TYLILICTL  492 (634)
Q Consensus       480 S-S~D---~tIrLWD~~  492 (634)
                      . +.+   ..|.+||+.
T Consensus       343 f~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        343 FCSVIKGVRQICVYDLA  359 (428)
T ss_pred             EEEcCCCCcEEEEEECC
Confidence            7 443   468888864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.13  E-value=7e-06  Score=59.51  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       343 GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      |+++++|++|...|  ..++|+|+        +.++++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i--~~i~~~~~--------~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSI--NSIAWSPD--------GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSE--EEEEEETT--------SSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcE--EEEEEecc--------cccceeeCCCCEEEEEC
Confidence            68999999999986  46699998        68999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=0.00042  Score=77.56  Aligned_cols=130  Identities=13%  Similarity=0.166  Sum_probs=91.7

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ..+|++++++.-.++-.+.... .  |..+.|+|+++      .=-++-|-.--++-+.|+|.  .+|..+.        
T Consensus       250 Eq~Lyll~t~g~s~~V~L~k~G-P--Vhdv~W~~s~~------EF~VvyGfMPAkvtifnlr~--~~v~df~--------  310 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLLKEG-P--VHDVTWSPSGR------EFAVVYGFMPAKVTIFNLRG--KPVFDFP--------  310 (566)
T ss_pred             cceEEEEEecCceEEEecCCCC-C--ceEEEECCCCC------EEEEEEecccceEEEEcCCC--CEeEeCC--------
Confidence            3589999999556666665433 2  46679999843      01355566788999999973  4555553        


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEEC---CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec----
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSL---DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT----  482 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~---DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~----  482 (634)
                        +|       +-.++-|+|.| +|+.|+.   -|.|-+||+.+. .++..+....  -+-++++|||+|+++ |+    
T Consensus       311 --eg-------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRl  378 (566)
T KOG2315|consen  311 --EG-------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRL  378 (566)
T ss_pred             --CC-------CccceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccE
Confidence              11       12466789999 5666664   579999999884 4666666433  356899999999998 55    


Q ss_pred             --CCcEEEEEcc
Q 047036          483 --DTYLILICTL  492 (634)
Q Consensus       483 --D~tIrLWD~~  492 (634)
                        |+-++||+..
T Consensus       379 rvdNg~Kiwhyt  390 (566)
T KOG2315|consen  379 RVDNGIKIWHYT  390 (566)
T ss_pred             EecCCeEEEEec
Confidence              8999999963

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=7.3e-05  Score=82.39  Aligned_cols=253  Identities=10%  Similarity=0.070  Sum_probs=155.1

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      ...+.+++.+..|+++++|      .+|.+||-.+++.+-.| .||...|-  --.|-|.+      +.+.|++++.|+.
T Consensus       145 VntV~FN~~Gd~l~SgSDD------~~vv~WdW~~~~~~l~f~SGH~~Nvf--QaKFiP~s------~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGSDD------LQVVVWDWVSGSPKLSFESGHCNNVF--QAKFIPFS------GDRTIVTSSRDGQ  210 (559)
T ss_pred             cceeeecccCceeeccCcc------ceEEeehhhccCcccccccccccchh--hhhccCCC------CCcCceeccccCc
Confidence            4567788888888888876      69999999999988777 57887652  22566652      2468999999999


Q ss_pred             EEEEEcCCCCce--EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccccccc--
Q 047036          387 LCQWDMRDRSGI--VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFP--  460 (634)
Q Consensus       387 IklWD~R~~~~~--Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~--  460 (634)
                      |++=-+-..+++  +..+..|..+               +.-+|.-|+.  .+.+++.|+.+.=.|++..+ +...+.  
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~---------------vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr  274 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGP---------------VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCR  274 (559)
T ss_pred             eeeeeeccccceecceecccccCc---------------cceeeecCCCCCcccccccccceeeeeeccCC-ccceeeee
Confidence            998654432221  2233334333               3344556665  58999999999999987653 333222  


Q ss_pred             -CCCC---CeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccc
Q 047036          461 -GLGS---PITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKI  534 (634)
Q Consensus       461 -GH~d---~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~F  534 (634)
                       .+..   ...+|++.|-..+..+  ++|.++|++|.+-.+  .+..++-.            -+..|.|... -..+..
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~--~e~~n~~~------------~~f~p~hl~~-d~~v~I  339 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRID--KEENNGVL------------DKFCPHHLVE-DDPVNI  339 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchh--hccccchh------------hhcCCccccc-cCcccc
Confidence             2333   4578999999886655  899999999976322  11111111            1223444323 245677


Q ss_pred             ccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc-cccccccccCCcceeeEEEeccCCCeeeecccc--CccccCC
Q 047036          535 HGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS-AHECYRNQQGLKSCYCYKIVLKDESIVESRFMH--DKFAVTD  611 (634)
Q Consensus       535 t~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~-~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~--d~f~~~~  611 (634)
                      +.+.|+..   +  ...+++-.|-+|++++ +....| .+++--..+-+-.| -|+=-+....|..++|--  .+|+++.
T Consensus       340 Tgl~Ysh~---~--sElLaSYnDe~IYLF~-~~~~~G~~p~~~s~~~~~~k~-vYKGHrN~~TVKgVNFfGPrsEyVvSG  412 (559)
T KOG1334|consen  340 TGLVYSHD---G--SELLASYNDEDIYLFN-KSMGDGSEPDPSSPREQYVKR-VYKGHRNSRTVKGVNFFGPRSEYVVSG  412 (559)
T ss_pred             eeEEecCC---c--cceeeeecccceEEec-cccccCCCCCCCcchhhccch-hhcccccccccceeeeccCccceEEec
Confidence            78888852   1  2477887899999984 333333 11100000011111 155556667788888855  4566654


Q ss_pred             C
Q 047036          612 S  612 (634)
Q Consensus       612 ~  612 (634)
                      +
T Consensus       413 S  413 (559)
T KOG1334|consen  413 S  413 (559)
T ss_pred             C
Confidence            3

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.98  E-value=0.0025  Score=68.27  Aligned_cols=214  Identities=14%  Similarity=0.180  Sum_probs=114.4

Q ss_pred             CCcEEEeee-CCCeEEEe----cCeeeEEEccCCceecce-eEEEecCCCCCc--ccccCcceeeEEeCCcceEEecCCC
Q 047036          255 GVQSLTLGA-LDNSFLVS----DLGLQVYRNYNRGIHNKG-VSVRFDGGSSKI--GSNSTPKKALLMRGETNMMLMSPLK  326 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~----G~~igV~k~~~~gl~~~~-~~~~~~~~~~~~--g~~fsP~~~mL~~~D~~mllsss~d  326 (634)
                      +....-++. +|+.|++-    +..|.||....+|..... ....+.+..+..  ...-.| +.+.++++++.++.....
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~-H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP-HQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE-EEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc-eeEEECCCCCEEEEEecC
Confidence            334334444 56665542    578999998777632221 122222211100  111112 234445565655543221


Q ss_pred             CCCCCCCcEEEEeCCCCc--EE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCC-c--e
Q 047036          327 DGKPQAPGVQQLDIETGK--IV--TEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRS-G--I  398 (634)
Q Consensus       327 ~~~~~~~TIrlWDleTGK--~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~-~--~  398 (634)
                      .     ..|+++++..+.  +.  ..+....+.-+ .-+.|+|++        ..+ ++.-.+++|.++++.... .  .
T Consensus       165 ~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~GP-Rh~~f~pdg--------~~~Yv~~e~s~~v~v~~~~~~~g~~~~  230 (345)
T PF10282_consen  165 A-----DRVYVYDIDDDTGKLTPVDSIKVPPGSGP-RHLAFSPDG--------KYAYVVNELSNTVSVFDYDPSDGSLTE  230 (345)
T ss_dssp             T-----TEEEEEEE-TTS-TEEEEEEEECSTTSSE-EEEEE-TTS--------SEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             C-----CEEEEEEEeCCCceEEEeeccccccCCCC-cEEEEcCCc--------CEEEEecCCCCcEEEEeecccCCceeE
Confidence            1     379999886654  53  34443333323 345999984        444 455668999999988322 1  2


Q ss_pred             EEecccCCCCccccccccccccCcceEEEEECCCC-eEEE-EECCCcEEEEecc--ccc-cccccccCCCCCeEEEEECC
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKT--SMR-QAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~--t~r-~akt~L~GH~d~ItsVdfSp  473 (634)
                      ++.+.-.         ...+.....-..++++||| +|.+ --..++|-+|++.  +++ .....++..+...+++.|+|
T Consensus       231 ~~~~~~~---------~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~  301 (345)
T PF10282_consen  231 IQTISTL---------PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP  301 (345)
T ss_dssp             EEEEESC---------ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T
T ss_pred             EEEeeec---------cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC
Confidence            2222100         0011112235678999999 5544 4577899999983  221 12234444466689999999


Q ss_pred             CCCEEEEE--cCCcEEEEEcc
Q 047036          474 DGKWILGT--TDTYLILICTL  492 (634)
Q Consensus       474 DGk~LlSS--~D~tIrLWD~~  492 (634)
                      ||+||+.+  .++.|.+|++.
T Consensus       302 ~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  302 DGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEecCCCeEEEEEEe
Confidence            99999984  46789999763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=97.94  E-value=5.1e-05  Score=78.52  Aligned_cols=66  Identities=17%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEE
Q 047036          360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVG  438 (634)
Q Consensus       360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASG  438 (634)
                      =+.+-||        +..+||++.|++||++.-|+.+. +..|..|+..               +.|+||+|+ +.+|+|
T Consensus       256 gvrIRpD--------~KIlATAGWD~RiRVyswrtl~p-LAVLkyHsag---------------vn~vAfspd~~lmAaa  311 (323)
T KOG0322|consen  256 GVRIRPD--------GKILATAGWDHRIRVYSWRTLNP-LAVLKYHSAG---------------VNAVAFSPDCELMAAA  311 (323)
T ss_pred             ceEEccC--------CcEEeecccCCcEEEEEeccCCc-hhhhhhhhcc---------------eeEEEeCCCCchhhhc
Confidence            3488899        45899999999999999998653 4566655543               579999999 689999


Q ss_pred             ECCCcEEEEec
Q 047036          439 SLDGKIRLYSK  449 (634)
Q Consensus       439 S~DGtIRLWD~  449 (634)
                      |.|+.|-||++
T Consensus       312 skD~rISLWkL  322 (323)
T KOG0322|consen  312 SKDARISLWKL  322 (323)
T ss_pred             cCCceEEeeec
Confidence            99999999985

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.00077  Score=74.96  Aligned_cols=129  Identities=12%  Similarity=-0.019  Sum_probs=80.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|+++|... ...+.+..+...+  ....|+||        |+.|+..+.+   ..|++||+.++..  +.+...    
T Consensus       198 ~~l~i~d~dG-~~~~~l~~~~~~~--~~p~wSPD--------G~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~----  260 (448)
T PRK04792        198 YQLMIADYDG-YNEQMLLRSPEPL--MSPAWSPD--------GRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSF----  260 (448)
T ss_pred             eEEEEEeCCC-CCceEeecCCCcc--cCceECCC--------CCEEEEEEecCCCcEEEEEECCCCCe--EEecCC----
Confidence            4788999764 4345555555443  34599999        5666665543   2699999987542  222100    


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEE-EECCCc--EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGK--IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGt--IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                          .+       ...+.+++||| +||. .+.+|.  |.+||+.+++  ...+..+...+...+|||||++|+. +. +
T Consensus       261 ----~g-------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        261 ----PG-------INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             ----CC-------CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCC
Confidence                00       01245789999 5764 566775  7777887652  3455556666788999999999987 32 3


Q ss_pred             Cc--EEEEEc
Q 047036          484 TY--LILICT  491 (634)
Q Consensus       484 ~t--IrLWD~  491 (634)
                      +.  |.++|+
T Consensus       328 g~~~Iy~~dl  337 (448)
T PRK04792        328 GKPQIYRVNL  337 (448)
T ss_pred             CCceEEEEEC
Confidence            33  444454

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.91  E-value=0.00029  Score=75.26  Aligned_cols=120  Identities=18%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCce--EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccc
Q 047036          376 ESTFLGLDDNRLCQWDMRDRSGI--VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       376 ~~laSGS~D~tIklWD~R~~~~~--Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t  451 (634)
                      ..++...+|=.|-+|.+....+.  |-.+.-|+=        .+  ....+++.-|+|..  .++-.|..|+|||-|++.
T Consensus       176 ~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nm--------Ee--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  176 KETFLSADDLRINLWNLEIIDQSFNIVDIKPANM--------EE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             cceEeeccceeeeeccccccCCceeEEEccccCH--------HH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            46778889999999999864321  111211110        00  11235666777754  678888999999999653


Q ss_pred             ccc---cccccc------------CCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          452 MRQ---AKTAFP------------GLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       452 ~r~---akt~L~------------GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      .-.   ...++.            +--..|..|-||++|+||+|-.=.+|+|||+.+   ..+.+.++.-|-
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nm---e~~pv~t~~vh~  314 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNM---EAKPVETYPVHE  314 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccc---cCCcceEEeehH
Confidence            100   011121            222467789999999999985557999999863   455555555443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.86  E-value=0.00042  Score=73.40  Aligned_cols=194  Identities=11%  Similarity=0.118  Sum_probs=126.2

Q ss_pred             Eeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          260 TLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       260 avG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      .-++ .||+-++-+   .-+.||+....++- + ....|+.| ..++|+.+.|        .++.|++++-|      +.
T Consensus        15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w-~-~~htls~Hd~~vtgvdWap--------~snrIvtcs~d------rn   78 (361)
T KOG1523|consen   15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-E-PAHTLSEHDKIVTGVDWAP--------KSNRIVTCSHD------RN   78 (361)
T ss_pred             eeeecCCCceEEeccCCceEEEEEecCCCCc-e-eceehhhhCcceeEEeecC--------CCCceeEccCC------CC
Confidence            3445 577766643   47888886554421 1 12234444 2234555554        45778999876      46


Q ss_pred             EEEEeC-CCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCcc
Q 047036          335 VQQLDI-ETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPVL  410 (634)
Q Consensus       335 IrlWDl-eTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V~  410 (634)
                      -|+|-. ..|+-..+  +.-|...+  ..|.++|.        .+.+|+||.-+.|.+|=....+.- |....  ..|  
T Consensus        79 ayVw~~~~~~~WkptlvLlRiNrAA--t~V~WsP~--------enkFAVgSgar~isVcy~E~ENdWWVsKhi--kkP--  144 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKPTLVLLRINRAA--TCVKWSPK--------ENKFAVGSGARLISVCYYEQENDWWVSKHI--KKP--  144 (361)
T ss_pred             ccccccCCCCeeccceeEEEeccce--eeEeecCc--------CceEEeccCccEEEEEEEecccceehhhhh--CCc--
Confidence            899998 54543332  34455544  45699997        689999999999999988754320 00000  001  


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc--c--c-------------cccccccCCCCCeEEEEEC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS--M--R-------------QAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t--~--r-------------~akt~L~GH~d~ItsVdfS  472 (634)
                               ....+.|+...|++ .||.||-|+..|+|..--  .  +             +....+..-++.|.+|.||
T Consensus       145 ---------irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs  215 (361)
T KOG1523|consen  145 ---------IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS  215 (361)
T ss_pred             ---------cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence                     12236788889998 899999999999998521  0  0             1112232457899999999


Q ss_pred             CCCCEEEE-EcCCcEEEEEcc
Q 047036          473 YDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       473 pDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |+|..|+= +.|.++-+-|..
T Consensus       216 ~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  216 PSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             CCCCEeeEecCCCceEEeecC
Confidence            99999997 999999999964

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.85  E-value=0.0011  Score=73.47  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             cEEEEeCCC---CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEE--EcCCCCceEEecccCCC
Q 047036          334 GVQQLDIET---GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQW--DMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       334 TIrlWDleT---GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklW--D~R~~~~~Vq~l~gh~s  407 (634)
                      .+.+||+.+   |+..+-..++....  .-.+|+||        |..|+..+ .++...+|  ++...+...+.+..+. 
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~--~~p~wSPD--------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~-  326 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQ--GNPSFSPD--------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY-  326 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCc--CCeEECCC--------CCEEEEEECCCCCceEEEEECcccccceEEeccCC-
Confidence            344578876   34433333332221  23489999        55555554 46655555  4432221122232110 


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                                    ....+.+++||| +||..+.+   ..|.+||+.+++ . +.|......+.+..|||||++|+- +.
T Consensus       327 --------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        327 --------------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             --------------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCCCccceEECCCCCEEEEEEC
Confidence                          122456789999 67766543   479999998763 3 334433345788999999999985 33


Q ss_pred             ---CCcEEEEEcc
Q 047036          483 ---DTYLILICTL  492 (634)
Q Consensus       483 ---D~tIrLWD~~  492 (634)
                         ...|.+||+.
T Consensus       391 ~~g~~~L~~vdl~  403 (428)
T PRK01029        391 NSNESELYLISLI  403 (428)
T ss_pred             CCCCceEEEEECC
Confidence               3457777753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.82  E-value=0.00027  Score=79.30  Aligned_cols=143  Identities=16%  Similarity=0.179  Sum_probs=102.5

Q ss_pred             EEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEE
Q 047036          258 SLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQ  337 (634)
Q Consensus       258 ~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrl  337 (634)
                      .|+.|-+.++|++       |....++|..     +++     .++...|+..++..++...|-+++.|      ..+-+
T Consensus        72 ~lvlgt~~g~v~~-------ys~~~g~it~-----~~s-----t~~h~~~v~~~~~~~~~~ciyS~~ad------~~v~~  128 (541)
T KOG4547|consen   72 MLVLGTPQGSVLL-------YSVAGGEITA-----KLS-----TDKHYGNVNEILDAQRLGCIYSVGAD------LKVVY  128 (541)
T ss_pred             EEEeecCCccEEE-------EEecCCeEEE-----EEe-----cCCCCCcceeeecccccCceEecCCc------eeEEE
Confidence            6677777777665       4444433322     222     35556777788877777778888776      68999


Q ss_pred             EeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036          338 LDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ  417 (634)
Q Consensus       338 WDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~  417 (634)
                      |+...+++++.|++....|  ...+++||        +.++++||  +.|++||+.+++ +|+++.||.++|        
T Consensus       129 ~~~~~~~~~~~~~~~~~~~--~sl~is~D--------~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~v--------  187 (541)
T KOG4547|consen  129 ILEKEKVIIRIWKEQKPLV--SSLCISPD--------GKILLTAS--RQIKVLDIETKE-VVITFTGHGSPV--------  187 (541)
T ss_pred             EecccceeeeeeccCCCcc--ceEEEcCC--------CCEEEecc--ceEEEEEccCce-EEEEecCCCcce--------
Confidence            9999999999999998876  34599999        45777776  589999999864 689999998875        


Q ss_pred             cccCcceEEEEECCC-----C-e-EEEEECCCcEEEEeccc
Q 047036          418 FSRGTNFQCFASTGD-----G-S-IVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       418 y~~~~~fssva~s~d-----G-~-IASGS~DGtIRLWD~~t  451 (634)
                             +|++|...     | + |.++.....|-+|=+..
T Consensus       188 -------~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  188 -------RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -------EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                   34444332     5 4 66677777788886543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.80  E-value=4.5e-05  Score=81.28  Aligned_cols=139  Identities=17%  Similarity=0.215  Sum_probs=94.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC----CceEEecccCCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR----SGIVQNMVKGDSP  408 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~----~~~Vq~l~gh~s~  408 (634)
                      ..|-|-|++|| .-+.|... ..|      |+  -+|+++  +.+++.|+..+.|+..|+|.+    +.+++.| .|.+.
T Consensus       234 qqv~L~nvetg-~~qsf~sk-sDV------fA--lQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ss  300 (425)
T KOG2695|consen  234 QQVLLTNVETG-HQQSFQSK-SDV------FA--LQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSS  300 (425)
T ss_pred             ceeEEEEeecc-cccccccc-hhH------HH--HHhccc--CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcc
Confidence            46889999986 34556533 333      22  245555  469999999999999999986    2233443 24333


Q ss_pred             ccccccccccccCcceEEEEECC--CCeEEEEECCCcEEEEeccccccc---cccccCCCCCeEE--EEECCCCCEEEE-
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSKTSMRQA---KTAFPGLGSPITH--VDVTYDGKWILG-  480 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~--dG~IASGS~DGtIRLWD~~t~r~a---kt~L~GH~d~Its--VdfSpDGk~LlS-  480 (634)
                                     ++|+-+-.  +.+|.+.+.+|+|+|||.+-.+ +   .++..||-..-.-  +-+.+....|+| 
T Consensus       301 ---------------vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  301 ---------------VTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             ---------------hhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEc
Confidence                           33433322  3478899999999999987543 4   5678888754333  445577778888 


Q ss_pred             EcCCcEEEEEcccccCCCCeeeee
Q 047036          481 TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       481 S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      +.|.|.|||.+.    .|.++.+.
T Consensus       365 GdDcytRiWsl~----~ghLl~ti  384 (425)
T KOG2695|consen  365 GDDCYTRIWSLD----SGHLLCTI  384 (425)
T ss_pred             cCeeEEEEEecc----cCceeecc
Confidence            999999999975    57665543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.79  E-value=0.00028  Score=76.34  Aligned_cols=107  Identities=16%  Similarity=0.057  Sum_probs=77.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccc
Q 047036          377 STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQA  455 (634)
Q Consensus       377 ~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~a  455 (634)
                      ..-..++...+.+|.+..+.+  ..+.||-+.               ++.|+++||+ +|.++-.|..||+=......-.
T Consensus       124 v~dkagD~~~~di~s~~~~~~--~~~lGhvSm---------------l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I  186 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRC--EPILGHVSM---------------LLDVAVSPDDQFIITADRDEKIRVSRYPATFVI  186 (390)
T ss_pred             EEeecCCceeeeeecccccCc--chhhhhhhh---------------hheeeecCCCCEEEEecCCceEEEEecCcccch
Confidence            333456667788887664322  344566554               3567899998 7999999999998554322112


Q ss_pred             cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      ..-+-||...|..+++.++ +.|+| |-|++|++||.+    +|+++.+|.
T Consensus       187 esfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~----sgk~L~t~d  232 (390)
T KOG3914|consen  187 ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT----SGKLLDTCD  232 (390)
T ss_pred             hhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecc----cCCcccccc
Confidence            2334499999999999987 44788 999999999987    788886665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.79  E-value=0.00078  Score=75.78  Aligned_cols=155  Identities=11%  Similarity=0.203  Sum_probs=94.3

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecC-----------------------
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITND-----------------------  366 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd-----------------------  366 (634)
                      .|-.+.|+..|++.+..+     -.|+++|+..  +--.|.-|.+.=   +|.|-|=                       
T Consensus        56 ~ik~s~DGqY~lAtG~YK-----P~ikvydlan--LSLKFERhlDae---~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   56 RIKVSPDGQYLLATGTYK-----PQIKVYDLAN--LSLKFERHLDAE---VVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             eeEecCCCcEEEEecccC-----CceEEEEccc--ceeeeeeccccc---ceeEEEeccchhhheEeecCceeeehhhcC
Confidence            344567778888888775     5799999873  444566665532   2233221                       


Q ss_pred             -------------CCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-C
Q 047036          367 -------------TKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-D  432 (634)
Q Consensus       367 -------------~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-d  432 (634)
                                   -++.-  ++--|++|+.-..|++.++..++ -++.+.-               ....+.++..++ .
T Consensus       126 ~hy~~RIP~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGr-fL~P~~~---------------~~~~lN~v~in~~h  187 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGR-FLNPFET---------------DSGELNVVSINEEH  187 (703)
T ss_pred             eeeeeecCcCCccccccC--CCccEEEeecCcceEEEEccccc-ccccccc---------------ccccceeeeecCcc
Confidence                         00000  00124444445555555655432 1222210               112345556655 5


Q ss_pred             CeEEEEECCCcEEEEecccccccc-----ccccCCCC-----CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          433 GSIVVGSLDGKIRLYSKTSMRQAK-----TAFPGLGS-----PITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       433 G~IASGS~DGtIRLWD~~t~r~ak-----t~L~GH~d-----~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |.||+|+.+|.|-.||.+....+.     ..++.|..     .|++|.|+-||-.++. |..+.+.|+|++
T Consensus       188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence            689999999999999987632111     12223333     3999999999999999 999999999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.78  E-value=0.00011  Score=81.89  Aligned_cols=173  Identities=11%  Similarity=0.097  Sum_probs=109.2

Q ss_pred             cEEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          257 QSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       257 ~~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      .++++.++|+.|++=...-+|=+.             ++.| ....+-.++|+++        -|++++.|      +.|
T Consensus        76 d~~~i~s~DGkf~il~k~~rVE~s-------------v~AH~~A~~~gRW~~dGt--------gLlt~GED------G~i  128 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARVERS-------------ISAHAAAISSGRWSPDGA--------GLLTAGED------GVI  128 (737)
T ss_pred             ceEEEEcCCceEEEecccchhhhh-------------hhhhhhhhhhcccCCCCc--------eeeeecCC------ceE
Confidence            389999999999875443333221             1111 0012333666664        35666654      799


Q ss_pred             EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036          336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG  415 (634)
Q Consensus       336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g  415 (634)
                      ++|. .+|-+-.++--....|  .++++.|++       ...+++.+....|+=--+..  ++ -....|.+-       
T Consensus       129 KiWS-rsGMLRStl~Q~~~~v--~c~~W~p~S-------~~vl~c~g~h~~IKpL~~n~--k~-i~WkAHDGi-------  188 (737)
T KOG1524|consen  129 KIWS-RSGMLRSTVVQNEESI--RCARWAPNS-------NSIVFCQGGHISIKPLAANS--KI-IRWRAHDGL-------  188 (737)
T ss_pred             EEEe-ccchHHHHHhhcCcee--EEEEECCCC-------CceEEecCCeEEEeeccccc--ce-eEEeccCcE-------
Confidence            9998 4576655555445544  567999984       46778877766666544432  22 223344432       


Q ss_pred             cccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEE
Q 047036          416 HQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLI  487 (634)
Q Consensus       416 ~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIr  487 (634)
                              +.|+..++.. .||+|+.|-.-++||..+ + ...+-..|..||++|+|.||--|++-| =+++|
T Consensus       189 --------iL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R  250 (737)
T KOG1524|consen  189 --------VLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPEKDYLLWS-YNTAR  250 (737)
T ss_pred             --------EEEeecCccccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccccceeeee-eeeee
Confidence                    3456666655 899999999999999876 3 445555799999999999995554433 33444

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=5.9e-05  Score=80.40  Aligned_cols=146  Identities=12%  Similarity=0.137  Sum_probs=97.7

Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEecccccc---
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQ---  454 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~---  454 (634)
                      |+.+-+..|-+-|+.++-.  |.+.                ++.++.+.-|.. +..|..|...|.|-.+|++...+   
T Consensus       228 fs~G~sqqv~L~nvetg~~--qsf~----------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ--QSFQ----------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             ecccccceeEEEEeecccc--cccc----------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence            5566677777888877532  3432                222333444444 34788899999999999876311   


Q ss_pred             -ccccccCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          455 -AKTAFPGLGSPITHVDVTY-DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       455 -akt~L~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                       +.+.| -|...|++|-.=. ++++|++ +++++|+|||.+... -++.++.|+||.....+                  
T Consensus       290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~------------------  349 (425)
T KOG2695|consen  290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAY------------------  349 (425)
T ss_pred             cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccc------------------
Confidence             22233 3889999988776 8899988 999999999998642 46678999999964311                  


Q ss_pred             cccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhccccc
Q 047036          532 NKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHE  574 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~  574 (634)
                         .|+..+      ..|..|++ +-|-|..||.++   .|++-
T Consensus       350 ---l~~~v~------~eeg~I~s~GdDcytRiWsl~---~ghLl  381 (425)
T KOG2695|consen  350 ---LPAHVK------EEEGSIFSVGDDCYTRIWSLD---SGHLL  381 (425)
T ss_pred             ---cccccc------cccceEEEccCeeEEEEEecc---cCcee
Confidence               222222      12457766 557788899987   45554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.76  E-value=0.0037  Score=69.25  Aligned_cols=141  Identities=17%  Similarity=0.152  Sum_probs=104.3

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-eEEEEEcC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-RLCQWDMR  393 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-tIklWD~R  393 (634)
                      .+++||..-+.       +.+.+++.--|-.|+-  +|..+|.  -..+.-+        ++-++.|..|+ .|-+.|.+
T Consensus       330 ~~Gd~ia~VSR-------GkaFi~~~~~~~~iqv--~~~~~Vr--Y~r~~~~--------~e~~vigt~dgD~l~iyd~~  390 (668)
T COG4946         330 VNGDYIALVSR-------GKAFIMRPWDGYSIQV--GKKGGVR--YRRIQVD--------PEGDVIGTNDGDKLGIYDKD  390 (668)
T ss_pred             CCCcEEEEEec-------CcEEEECCCCCeeEEc--CCCCceE--EEEEccC--------CcceEEeccCCceEEEEecC
Confidence            45667776665       5799999887877764  6777774  3366665        46799999998 99999998


Q ss_pred             CCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036          394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS  472 (634)
                      ++.  ++.+...               --++.+++.+++| ++|+|.....|-+.|+.+++ .+..=..--+-|+.+++|
T Consensus       391 ~~e--~kr~e~~---------------lg~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~  452 (668)
T COG4946         391 GGE--VKRIEKD---------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWH  452 (668)
T ss_pred             Cce--EEEeeCC---------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEc
Confidence            764  2333210               1246788999999 69999999999999999874 444334555779999999


Q ss_pred             CCCCEEEEEc-----CCcEEEEEcc
Q 047036          473 YDGKWILGTT-----DTYLILICTL  492 (634)
Q Consensus       473 pDGk~LlSS~-----D~tIrLWD~~  492 (634)
                      |+++|||=+.     -..|+|+|+.
T Consensus       453 ~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         453 PNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             CCceeEEEecCcceeeeeEEEEecC
Confidence            9999999532     3568899964

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.75  E-value=0.012  Score=64.00  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             EEEEECCCC-eEEEEEC----------CCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEEE--cCCcEEEEE
Q 047036          425 QCFASTGDG-SIVVGSL----------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILGT--TDTYLILIC  490 (634)
Q Consensus       425 ssva~s~dG-~IASGS~----------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlSS--~D~tIrLWD  490 (634)
                      ..++++++| +|.++..          .+.|-++|..+.+ ....++ .+..+.+|+|||||+ +|.++  .+++|.++|
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            448899887 6666431          2579999998864 445554 356899999999999 77763  478999999


Q ss_pred             cccccCCCCeeeee
Q 047036          491 TLFSDKDGKTKTGF  504 (634)
Q Consensus       491 ~~~~~~~G~~~~gF  504 (634)
                      +.    +++.+...
T Consensus       329 ~~----t~k~i~~i  338 (352)
T TIGR02658       329 AE----TGKELSSV  338 (352)
T ss_pred             Cc----CCeEEeee
Confidence            85    56655443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.68  E-value=0.00076  Score=77.15  Aligned_cols=123  Identities=9%  Similarity=0.009  Sum_probs=85.3

Q ss_pred             EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcce
Q 047036          345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF  424 (634)
Q Consensus       345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f  424 (634)
                      .+..+..|.+.|  .++.++|-        +..+++.+.|.+|+||.-.....++..+.          ....     .+
T Consensus       390 ~~~~~~~h~g~v--~~v~~nPF--------~~k~fls~gDW~vriWs~~~~~~Pl~~~~----------~~~~-----~v  444 (555)
T KOG1587|consen  390 GHSTFITHIGPV--YAVSRNPF--------YPKNFLSVGDWTVRIWSEDVIASPLLSLD----------SSPD-----YV  444 (555)
T ss_pred             ccccccccCcce--EeeecCCC--------ccceeeeeccceeEeccccCCCCcchhhh----------hccc-----ee
Confidence            345677787765  46688885        45555555599999998753222221111          1111     26


Q ss_pred             EEEEECCCC--eEEEEECCCcEEEEeccccc-cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          425 QCFASTGDG--SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       425 ssva~s~dG--~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ++++.||-.  .+|++..||.|-|||+..-. .+..+.+-+....+.+.++++|+.|+. ...|++.++++.
T Consensus       445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             eeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            888999876  68999999999999986421 133344444666788899999999999 778999999974

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.56  E-value=0.00084  Score=78.72  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=101.4

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC------
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD------  383 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~------  383 (634)
                      +.++...++.++.+...      ++|.+-|+.+-+.+.+|..|++.+    .+|.-.        |++|++++.      
T Consensus       180 v~imR~Nnr~lf~G~t~------G~V~LrD~~s~~~iht~~aHs~si----SDfDv~--------GNlLitCG~S~R~~~  241 (1118)
T KOG1275|consen  180 VTIMRYNNRNLFCGDTR------GTVFLRDPNSFETIHTFDAHSGSI----SDFDVQ--------GNLLITCGYSMRRYN  241 (1118)
T ss_pred             eEEEEecCcEEEeeccc------ceEEeecCCcCceeeeeeccccce----eeeecc--------CCeEEEeeccccccc
Confidence            55666666666666543      799999999999999999999854    477765        788888874      


Q ss_pred             ---CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccc---cccc
Q 047036          384 ---DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTS---MRQA  455 (634)
Q Consensus       384 ---D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t---~r~a  455 (634)
                         |.=|++||+|+-+.+ ..+.=+-        +.+      |-  -|.|.  .++|++|.-|...+-|..+   ....
T Consensus       242 l~~D~FvkVYDLRmmral-~PI~~~~--------~P~------fl--rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  242 LAMDPFVKVYDLRMMRAL-SPIQFPY--------GPQ------FL--RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             ccccchhhhhhhhhhhcc-CCccccc--------Cch------hh--hhcccccceEEEEecccceeeccccccCCCccc
Confidence               555799999975432 1111111        111      11  22333  3789999999999999433   2112


Q ss_pred             cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                      +..+...+..|.+++||++|.-||- -.++.|.+|-
T Consensus       305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2333445667999999999999998 6799999996

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.55  E-value=0.00073  Score=73.14  Aligned_cols=121  Identities=16%  Similarity=0.205  Sum_probs=80.0

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |........+...++.....+    ...+.+|.+..|++ +..-||-..|  .-|+|+||        ++.|+++-.|..
T Consensus       110 ~~ai~~~~~~~sv~v~dkagD----~~~~di~s~~~~~~-~~~lGhvSml--~dVavS~D--------~~~IitaDRDEk  174 (390)
T KOG3914|consen  110 PTAISFIREDTSVLVADKAGD----VYSFDILSADSGRC-EPILGHVSML--LDVAVSPD--------DQFIITADRDEK  174 (390)
T ss_pred             cceeeeeeccceEEEEeecCC----ceeeeeecccccCc-chhhhhhhhh--heeeecCC--------CCEEEEecCCce
Confidence            333444455666666655533    25577777776554 4456898865  45699999        679999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCcccccccc-ccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGH-QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~-~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      ||+--.-.- -.+..          |..|| .|     ++.++..++-.|+|||.|++||+||..+++ +..++
T Consensus       175 IRvs~ypa~-f~Ies----------fclGH~eF-----VS~isl~~~~~LlS~sGD~tlr~Wd~~sgk-~L~t~  231 (390)
T KOG3914|consen  175 IRVSRYPAT-FVIES----------FCLGHKEF-----VSTISLTDNYLLLSGSGDKTLRLWDITSGK-LLDTC  231 (390)
T ss_pred             EEEEecCcc-cchhh----------hccccHhh-----eeeeeeccCceeeecCCCCcEEEEecccCC-ccccc
Confidence            998654321 12222          22333 34     356677777789999999999999999886 33443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.00047  Score=77.00  Aligned_cols=145  Identities=15%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             CcEEEEeCCC-------CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036          333 PGVQQLDIET-------GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       333 ~TIrlWDleT-------GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                      +||++|.+..       .-|--++..|+..|+  -..|-.+        .+.  .+|-|+.|.+||+-.++.+.|.+...
T Consensus       757 KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~--~igfL~~--------lr~--i~ScD~giHlWDPFigr~Laq~~dap  824 (1034)
T KOG4190|consen  757 KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH--DIGFLAD--------LRS--IASCDGGIHLWDPFIGRLLAQMEDAP  824 (1034)
T ss_pred             ceEEEEEeccccCccccceeeeEhhhccCccc--ceeeeec--------cce--eeeccCcceeecccccchhHhhhcCc
Confidence            7999999753       236667889998764  3355544        233  45569999999997655332222110


Q ss_pred             CCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---cc-cccccCCCCCeEEEEECCCCCEEEE
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---QA-KTAFPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---~a-kt~L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                               -|  ....++-|+-.-... .||-++...||||+|.+...   .. ...-+|-...+++|++-|.|.|+++
T Consensus       825 ---------k~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa  893 (1034)
T KOG4190|consen  825 ---------KE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA  893 (1034)
T ss_pred             ---------cc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence                     00  012234443221222 35666899999999987532   01 1223455667999999999999999


Q ss_pred             -EcCCcEEEEEcccccCCCCeeeee
Q 047036          481 -TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       481 -S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                       -..++|.+.|++    +|+.++..
T Consensus       894 ~LSnGci~~LDaR----~G~vINsw  914 (1034)
T KOG4190|consen  894 ALSNGCIAILDAR----NGKVINSW  914 (1034)
T ss_pred             HhcCCcEEEEecC----CCceeccC
Confidence             678999999987    67655533

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.32  E-value=0.1  Score=52.65  Aligned_cols=149  Identities=11%  Similarity=0.057  Sum_probs=86.1

Q ss_pred             eeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEe-cCCCCCCCCCCCEEEEEeCCCeE
Q 047036          309 KALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDIT-NDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       309 ~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs-Pd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      +..+...++.+++++-..      +.|+.||..+++.. .+....   +..+ .+. ++         ..++.+... .+
T Consensus         4 gp~~d~~~g~l~~~D~~~------~~i~~~~~~~~~~~-~~~~~~---~~G~-~~~~~~---------g~l~v~~~~-~~   62 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG------GRIYRVDPDTGEVE-VIDLPG---PNGM-AFDRPD---------GRLYVADSG-GI   62 (246)
T ss_dssp             EEEEETTTTEEEEEETTT------TEEEEEETTTTEEE-EEESSS---EEEE-EEECTT---------SEEEEEETT-CE
T ss_pred             ceEEECCCCEEEEEEcCC------CEEEEEECCCCeEE-EEecCC---CceE-EEEccC---------CEEEEEEcC-ce
Confidence            344443466666666543      68999999987653 344333   2233 666 44         355665554 44


Q ss_pred             EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECC---------CcEEEEecccccccccc
Q 047036          388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD---------GKIRLYSKTSMRQAKTA  458 (634)
Q Consensus       388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D---------GtIRLWD~~t~r~akt~  458 (634)
                      .++|+.++.  ++.+.....       +.  ........+++.++|.|..+...         |.|..++.. + +....
T Consensus        63 ~~~d~~~g~--~~~~~~~~~-------~~--~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~  129 (246)
T PF08450_consen   63 AVVDPDTGK--VTVLADLPD-------GG--VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVV  129 (246)
T ss_dssp             EEEETTTTE--EEEEEEEET-------TC--SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEE
T ss_pred             EEEecCCCc--EEEEeeccC-------CC--cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEE
Confidence            555988753  334321100       00  02234567899999976655432         456667765 2 23333


Q ss_pred             ccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          459 FPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       459 L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      +.+ -...++|+|||||+.|. + +..+.|..++..
T Consensus       130 ~~~-~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen  130 ADG-LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             EEE-ESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecC-cccccceEECCcchheeecccccceeEEEecc
Confidence            333 34468999999999875 5 778888888864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.30  E-value=0.053  Score=60.19  Aligned_cols=119  Identities=14%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC--CeEEEEEcCCCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD--NRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D--~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      ..|+++|+.+|+..+-.. ..+.+  ...+|+||++       .++++.+.+  ..|.++|+.++.  .+.|..+..   
T Consensus       213 ~~Iyv~dl~tg~~~~lt~-~~g~~--~~~~~SPDG~-------~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~---  277 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIAS-SQGML--VVSDVSKDGS-------KLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPG---  277 (419)
T ss_pred             CEEEEEECCCCcEEEEec-CCCcE--EeeEECCCCC-------EEEEEEccCCCcEEEEEECCCCc--EEEcccCCC---
Confidence            479999999997644333 22221  3458999942       344444433  568888987653  233421110   


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                                 . .....++||| +||-.|. .|  .|.+.|+.+++ ... +.-.+..  ..++||||++|+- +.
T Consensus       278 -----------~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~r-lt~~g~~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        278 -----------I-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQ-VVFHGKN--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             -----------c-cCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEe-CccCCCc--CceECCCCCEEEEEEc
Confidence                       0 1123579999 6766553 23  67788887763 322 2211222  2489999999987 44

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.29  E-value=0.094  Score=56.22  Aligned_cols=163  Identities=13%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEE---Ee--cc------CCCcceeEEEEecCCCCCCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTE---WK--FE------KDGTDITMRDITNDTKSSQLD  373 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~---lk--gH------~~~V~I~vvsfsPd~K~~q~~  373 (634)
                      .|.... .+.++++|+.+...     +++|.++++.. |++...   +.  |+      ...-....+.|+|+++     
T Consensus        88 ~p~~i~-~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-----  156 (345)
T PF10282_consen   88 SPCHIA-VDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-----  156 (345)
T ss_dssp             CEEEEE-ECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-----
T ss_pred             CcEEEE-EecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-----
Confidence            455433 35666766666543     37999999976 665443   21  11      0011123458999943     


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEecc-
Q 047036          374 PSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKT-  450 (634)
Q Consensus       374 ~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~-  450 (634)
                        ..+++......|+++++......+.....    +       ......--..++|+|+| ++ ++.-.+++|.+|+.. 
T Consensus       157 --~v~v~dlG~D~v~~~~~~~~~~~l~~~~~----~-------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  157 --FVYVPDLGADRVYVYDIDDDTGKLTPVDS----I-------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             --EEEEEETTTTEEEEEEE-TTS-TEEEEEE----E-------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             --EEEEEecCCCEEEEEEEeCCCceEEEeec----c-------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence              24445556678999998765421111100    0       00111223567899998 44 566788999999987 


Q ss_pred             -ccc----cccccccC-C-C-CCeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          451 -SMR----QAKTAFPG-L-G-SPITHVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       451 -t~r----~akt~L~G-H-~-d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                       .++    +...+++. . + ..-..|.+||||++|..  ...++|-++++.
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence             221    11123321 1 1 25789999999999987  347899999974

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.28  E-value=0.0026  Score=68.12  Aligned_cols=126  Identities=18%  Similarity=0.174  Sum_probs=83.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|+.+|+++|+++-+......    .  ....+        +..++.++.|+.|..+|+.++.. +-.....       
T Consensus       251 g~l~a~d~~tG~~~W~~~~~~~----~--~p~~~--------~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~-------  308 (377)
T TIGR03300       251 GRVAALDLRSGRVLWKRDASSY----Q--GPAVD--------DNRLYVTDADGVVVALDRRSGSE-LWKNDEL-------  308 (377)
T ss_pred             CEEEEEECCCCcEEEeeccCCc----c--CceEe--------CCEEEEECCCCeEEEEECCCCcE-EEccccc-------
Confidence            6899999999998866652211    0  11112        46899999999999999987642 2221000       


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILI  489 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLW  489 (634)
                        +     ...+++.+. .+++|++++.+|.|+++|..+++ .+..++-++.++.+--+..+++.++.+.|++|..+
T Consensus       309 --~-----~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~-~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       309 --K-----YRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGS-FVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             --c-----CCccccCEE-ECCEEEEEeCCCEEEEEECCCCC-EEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence              0     001111122 25689999999999999998874 66667666666666555667776667999988654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.24  E-value=0.0013  Score=69.71  Aligned_cols=184  Identities=17%  Similarity=0.244  Sum_probs=104.2

Q ss_pred             eEEEec--CeeeEEEccCCceecceeEEEecC--CCCCcccccCcceeeEEeC-CcceEEecCCCCCCCCCCcEEEEeCC
Q 047036          267 SFLVSD--LGLQVYRNYNRGIHNKGVSVRFDG--GSSKIGSNSTPKKALLMRG-ETNMMLMSPLKDGKPQAPGVQQLDIE  341 (634)
Q Consensus       267 sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~--~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~~~~~~~TIrlWDle  341 (634)
                      -|++.+  .+|.+||....++... +..+++.  |.++.|...+|...+|-.- +-.+|++.                  
T Consensus       101 hFLlstNdktiKlWKiyeknlk~v-a~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------------------  161 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVV-AENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------------------  161 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhh-hccccccccccccCCCcCCHHHhhcccccccceEEEe------------------
Confidence            467654  6899999877654432 1223332  2344555555554333221 11122222                  


Q ss_pred             CCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce--EEecccCCCCcccccccccc
Q 047036          342 TGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI--VQNMVKGDSPVLHWTQGHQF  418 (634)
Q Consensus       342 TGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~--Vq~l~gh~s~V~~~~~g~~y  418 (634)
                        +.-|.+ ..|.--+  ...+|..|         ..++..++|=.|-+|.+......  +-.+.-|+           +
T Consensus       162 --~p~rvyaNaH~yhi--NSiS~NsD---------~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~n-----------m  217 (460)
T COG5170         162 --KPCRVYANAHPYHI--NSISFNSD---------KETLLSADDLRINLWNLEIIDGSFNIVDIKPHN-----------M  217 (460)
T ss_pred             --ccceeccccceeEe--eeeeecCc---------hheeeeccceeeeeccccccCCceEEEeccCcc-----------H
Confidence              111122 4565432  34466665         46777889999999999754321  11222221           1


Q ss_pred             c-cCcceEEEEECCCC--eEEEEECCCcEEEEeccccc---ccccc------------ccCCCCCeEEEEECCCCCEEEE
Q 047036          419 S-RGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMR---QAKTA------------FPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       419 ~-~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r---~akt~------------L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                      . ....+++.-|+|..  .+.-.|..|+|+|-|++...   +.+.+            |.+....|..+-||++|+||||
T Consensus       218 eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls  297 (460)
T COG5170         218 EELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS  297 (460)
T ss_pred             HHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence            1 11224566677754  46667788999999976310   01111            1233467888999999999999


Q ss_pred             EcCCcEEEEEccc
Q 047036          481 TTDTYLILICTLF  493 (634)
Q Consensus       481 S~D~tIrLWD~~~  493 (634)
                      -.=.+|+|||+.+
T Consensus       298 RdyltvkiwDvnm  310 (460)
T COG5170         298 RDYLTVKIWDVNM  310 (460)
T ss_pred             eccceEEEEeccc
Confidence            6667999999874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.21  E-value=0.0015  Score=81.10  Aligned_cols=119  Identities=15%  Similarity=0.273  Sum_probs=84.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE---eCCCeEEEEEcCCCC--ceEEecccCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG---LDDNRLCQWDMRDRS--GIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG---S~D~tIklWD~R~~~--~~Vq~l~gh~s  407 (634)
                      +.|-+|.+. -|.+..|+.|.....    +|---        +..++++   ++++.+++||.-...  .+|.  ..|.+
T Consensus      2273 g~l~l~q~~-pk~~~s~qchnk~~~----Df~Fi--------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2273 GDLSLWQAS-PKPYTSWQCHNKALS----DFRFI--------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred             CceeecccC-CcceeccccCCcccc----ceeee--------ehhhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence            679999987 788999999987542    33221        2345544   467999999976532  2333  23332


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                                     -.+|+++-|.. .|.|||.+|.|+|||++. |+.+.+++.       ++   --.++++ +..++
T Consensus      2338 ---------------gaT~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~-------~~---~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2338 ---------------GATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA-------LD---TREYFVTGSSEGN 2391 (2439)
T ss_pred             ---------------CceEEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh-------hh---hhheeeccCcccc
Confidence                           24788998887 689999999999999876 345566654       22   3457787 99999


Q ss_pred             EEEEEcc
Q 047036          486 LILICTL  492 (634)
Q Consensus       486 IrLWD~~  492 (634)
                      |+||++.
T Consensus      2392 ikIw~~s 2398 (2439)
T KOG1064|consen 2392 IKIWRLS 2398 (2439)
T ss_pred             eEEEEcc
Confidence            9999975

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.20  E-value=0.0069  Score=65.03  Aligned_cols=169  Identities=13%  Similarity=0.221  Sum_probs=93.8

Q ss_pred             CcEEEeeeCCCeEEEec-CeeeEEEccCCceecceeEEEecCCC------CCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036          256 VQSLTLGALDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGS------SKIGSNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       256 ~~~LavG~~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~------~~~g~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      +|++.+-+.--.|+-.+ -+|.+|+..--...|  .||.++.+.      -+++..|.|...+       +++-+++.  
T Consensus       167 iNSIS~NsD~Et~lSADdLRINLWnlei~d~sF--nIVDIKP~nmEeLteVITsaEFhp~~cn-------~f~YSSSK--  235 (433)
T KOG1354|consen  167 INSISVNSDKETFLSADDLRINLWNLEIIDQSF--NIVDIKPANMEELTEVITSAEFHPHHCN-------VFVYSSSK--  235 (433)
T ss_pred             eeeeeecCccceEeeccceeeeeccccccCCce--eEEEccccCHHHHHHHHhhhccCHhHcc-------EEEEecCC--
Confidence            45666655333455444 599999974333222  355554431      1277889988754       45555553  


Q ss_pred             CCCCCcEEEEeCCCCcEE----EEEeccCCCcc----------eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          329 KPQAPGVQQLDIETGKIV----TEWKFEKDGTD----------ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       329 ~~~~~TIrlWDleTGK~V----~~lkgH~~~V~----------I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                          ++|||-|+...-+-    ..|.-..+.++          |+-+.|+++        |+++++ -+=.||++||+..
T Consensus       236 ----GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s--------Gryils-RDyltvk~wD~nm  302 (433)
T KOG1354|consen  236 ----GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS--------GRYILS-RDYLTVKLWDLNM  302 (433)
T ss_pred             ----CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC--------CcEEEE-eccceeEEEeccc
Confidence                79999998733211    11222222211          223355554        566665 3338999999966


Q ss_pred             CCceEEecccCCCCccccccccccccCc---ceEEEEECCCC-eEEEEECCCcEEEEeccc
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGT---NFQCFASTGDG-SIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~---~fssva~s~dG-~IASGS~DGtIRLWD~~t  451 (634)
                      ..+++.++.-|..--  -..-.-|....   .|.| ++++++ ++++||..+-.|+|++..
T Consensus       303 e~~pv~t~~vh~~lr--~kLc~lYEnD~IfdKFec-~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  303 EAKPVETYPVHEYLR--SKLCSLYENDAIFDKFEC-SWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             cCCcceEEeehHhHH--HHHHHHhhccchhheeEE-EEcCCcceEecccccceEEEecCCC
Confidence            555666665443100  00000122221   3555 456665 899999999999999543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.17  E-value=0.0071  Score=59.63  Aligned_cols=141  Identities=16%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             CcEEEEeCCCCcEEEEEec---cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKF---EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkg---H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ++|+.||+.+|+.+-+..-   ....    +....++        +..+++++.++.|..||+.+++ .+-.... ..++
T Consensus         3 g~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~--------~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~-~~~~   68 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLGPGIGGP----VATAVPD--------GGRVYVASGDGNLYALDAKTGK-VLWRFDL-PGPI   68 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECSSSCSSE----EETEEEE--------TTEEEEEETTSEEEEEETTTSE-EEEEEEC-SSCG
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCc----cceEEEe--------CCEEEEEcCCCEEEEEECCCCC-EEEEeec-cccc
Confidence            7999999999999988754   2221    1112323        4689999999999999998864 3333221 1110


Q ss_pred             cccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc-cCCCC---CeEEEEECCCCCEEEE-EcCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF-PGLGS---PITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L-~GH~d---~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                ...     ....++.|++++.++.|+.+|..+++ .+-.+ .....   ......+..+|..++. +.++
T Consensus        69 ----------~~~-----~~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  132 (238)
T PF13360_consen   69 ----------SGA-----PVVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG  132 (238)
T ss_dssp             ----------GSG-----EEEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred             ----------cce-----eeecccccccccceeeeEecccCCcc-eeeeeccccccccccccccCceEecCEEEEEeccC
Confidence                      000     12346688888899999999988775 33332 21111   2233344444777777 6699


Q ss_pred             cEEEEEcccccCCCCeeeeecCC
Q 047036          485 YLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                      .|..+|+.    +|+.+-.+..+
T Consensus       133 ~l~~~d~~----tG~~~w~~~~~  151 (238)
T PF13360_consen  133 KLVALDPK----TGKLLWKYPVG  151 (238)
T ss_dssp             EEEEEETT----TTEEEEEEESS
T ss_pred             cEEEEecC----CCcEEEEeecC
Confidence            99999975    68776656543

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.15  E-value=0.021  Score=61.25  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=81.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCC--cce-eEEEE--ecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDG--TDI-TMRDI--TNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~--V~I-~vvsf--sPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                      +.|+.+|+++|+.+.+.......  -.+ .+..+  +|-     . .+..++.++.++.++.||++++.. +-...    
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~-----~-~~~~vy~~~~~g~l~a~d~~tG~~-~W~~~----  268 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV-----V-DGGQVYAVSYQGRVAALDLRSGRV-LWKRD----  268 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE-----E-ECCEEEEEEcCCEEEEEECCCCcE-EEeec----
Confidence            68999999999987654321100  000 00011  111     0 035888999999999999987642 22211    


Q ss_pred             CccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCC-CeEEEEECCCCCEEEE-EcCCc
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS-PITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d-~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                              .   .  ...+.+. .+++|++++.||.|..+|..+++ .+-..+.... .+.+..+  .|..|+. +.+++
T Consensus       269 --------~---~--~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~  331 (377)
T TIGR03300       269 --------A---S--SYQGPAV-DDNRLYVTDADGVVVALDRRSGS-ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY  331 (377)
T ss_pred             --------c---C--CccCceE-eCCEEEEECCCCeEEEEECCCCc-EEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence                    0   0  0111111 25689999999999999998764 3333322111 1222222  3556666 88999


Q ss_pred             EEEEEcccccCCCCeeeeec
Q 047036          486 LILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~  505 (634)
                      |.++|..    +|+.+..+.
T Consensus       332 l~~~d~~----tG~~~~~~~  347 (377)
T TIGR03300       332 LHWLSRE----DGSFVARLK  347 (377)
T ss_pred             EEEEECC----CCCEEEEEE
Confidence            9999975    677654443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.13  E-value=0.022  Score=65.90  Aligned_cols=199  Identities=17%  Similarity=0.148  Sum_probs=119.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe------------------------------
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL------------------------------  382 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS------------------------------  382 (634)
                      +.+...|.++-+++.+.......   ..++++|++        .++++.+                              
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnp---d~v~~spdG--------k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea  283 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNL---DNVDTDYDG--------KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEE  283 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCc---ccceECCCC--------CEEEEeccCcccCcceeeeccccCceEEEEchHHHHH
Confidence            57888899988888887665432   245888884        4454443                              


Q ss_pred             ----------CCCeEEEEEcCC----CCceEEecccCCCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEE
Q 047036          383 ----------DDNRLCQWDMRD----RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRL  446 (634)
Q Consensus       383 ----------~D~tIklWD~R~----~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRL  446 (634)
                                .+++|.++|.++    +..++..+.                ....-..++++||| + +++|..+++|-+
T Consensus       284 ~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----------------VGKsPHGV~vSPDGkylyVanklS~tVSV  347 (635)
T PRK02888        284 AVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----------------VPKNPHGVNTSPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             hhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----------------CCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence                      235567777665    222222221                11112456889999 5 566778999999


Q ss_pred             Eecccccc----------ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCc
Q 047036          447 YSKTSMRQ----------AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP  515 (634)
Q Consensus       447 WD~~t~r~----------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~p  515 (634)
                      .|+...+.          ++..-+..+..-.+.+|.++|.-..| -.|+.|..|++.      +.+..|.|--.  .|.-
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~------~a~~~~~g~~~--~~v~  419 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE------AAIRAYKGEKV--DPIV  419 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH------HHHHHhccccC--Ccce
Confidence            99876431          01111123334478899999986666 779999999964      12223333221  1211


Q ss_pred             ee--EeecCCCcccc--------CC----Ccccccccccccc-cCCCCceEEEEEcCCeEEEEeCh
Q 047036          516 RL--LKLTPLDSHLA--------GT----DNKIHGGHFSWVT-ENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       516 r~--L~L~Pe~~~~~--------g~----~i~Ft~a~Fs~~t-~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      .+  ++-.|.|.+..        |+    -.+|++++|-++- .--.++++|=-|.+++..|-|.-
T Consensus       420 ~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p  485 (635)
T PRK02888        420 QKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHDGP  485 (635)
T ss_pred             ecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEecCC
Confidence            11  23346665331        11    2579999998751 11245677777888888888873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.10  E-value=0.24  Score=54.08  Aligned_cols=56  Identities=16%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCC-----CcceeEEEEecCCCCCCCCCCCEEEEEe-C-CCeEEEEEcCCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKD-----GTDITMRDITNDTKSSQLDPSESTFLGL-D-DNRLCQWDMRDRS  396 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~-----~V~I~vvsfsPd~K~~q~~~g~~laSGS-~-D~tIklWD~R~~~  396 (634)
                      ..|.+||++|++.++++.-..+     ...-...+++||        |..++... + +++|-++|+.+++
T Consensus        77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d--------gk~l~V~n~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658        77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD--------NKTLLFYQFSPSPAVGVVDLEGKA  139 (352)
T ss_pred             CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC--------CCEEEEecCCCCCEEEEEECCCCc
Confidence            5899999999999999874222     000124589999        45666554 4 8999999999763

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.08  E-value=0.0017  Score=74.77  Aligned_cols=156  Identities=9%  Similarity=0.110  Sum_probs=95.4

Q ss_pred             EEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccccccccCcceEEEEECCCC--eEE
Q 047036          361 RDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIV  436 (634)
Q Consensus       361 vsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IA  436 (634)
                      +.++|..+.     ...+++-+..++| +|.+....  .+--.+.||+..++               -+.+.+..  .+|
T Consensus        73 ~qws~h~a~-----~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsrait---------------d~n~~~q~pdVla  131 (1081)
T KOG0309|consen   73 VQWSPHPAK-----PYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAIT---------------DINFNPQHPDVLA  131 (1081)
T ss_pred             eecccCCCC-----ceeEEecCcchhh-hhhhhcCCccceEEEEecCcccee---------------ccccCCCCCccee
Confidence            466666443     2356666665554 88887542  22123456665542               22334443  589


Q ss_pred             EEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCc
Q 047036          437 VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP  515 (634)
Q Consensus       437 SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~p  515 (634)
                      ++|.|-.+.+||.++.+........-...-..|.++. |+..||++.-+-|++||++.   .+..+...++|...     
T Consensus       132 tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~---gs~pl~s~K~~vs~-----  203 (1081)
T KOG0309|consen  132 TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK---GSTPLCSLKGHVSS-----  203 (1081)
T ss_pred             eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC---CCcceEEeccccee-----
Confidence            9999999999998765433333333233446788884 66666679999999999872   34445555555431     


Q ss_pred             eeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          516 RLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       516 r~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                                   ...+.|.+.+.+         .....+.|+.|..||..+
T Consensus       204 -------------vn~~~fnr~~~s---------~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  204 -------------VNSIDFNRFKYS---------EIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             -------------eehHHHhhhhhh---------hhcccCCCCceeeecccc
Confidence                         134566666543         233447799999999874

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0021  Score=72.04  Aligned_cols=120  Identities=17%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce------EEecccCCCCcccccccccc
Q 047036          345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI------VQNMVKGDSPVLHWTQGHQF  418 (634)
Q Consensus       345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~------Vq~l~gh~s~V~~~~~g~~y  418 (634)
                      .+..|.||+..|+ .+.++++.         +.++++|.|+||++|.+|..+.-      .-++..|             
T Consensus       727 rL~nf~GH~~~iR-ai~AidNE---------NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-------------  783 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIR-AIAAIDNE---------NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-------------  783 (1034)
T ss_pred             eeecccCcHHHhH-HHHhcccc---------cceeeccCCceEEEEEeccccCccccceeeeEhhhc-------------
Confidence            4567999999876 55466653         67999999999999999865321      1222233             


Q ss_pred             ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc---c--CCCCCeEEEEECCCCCEEEE--EcCCcEEEEE
Q 047036          419 SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF---P--GLGSPITHVDVTYDGKWILG--TTDTYLILIC  490 (634)
Q Consensus       419 ~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L---~--GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD  490 (634)
                        +.++..+.|-.+- +||  |-||-|.|||.-.+| .....   +  |-+.-|.+|- +-|...|.+  |...||+++|
T Consensus       784 --kk~i~~igfL~~lr~i~--ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  784 --KKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             --cCcccceeeeeccceee--eccCcceeecccccc-hhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeee
Confidence              3344555555554 555  459999999986554 33221   2  2233344332 123334444  6689999999


Q ss_pred             ccc
Q 047036          491 TLF  493 (634)
Q Consensus       491 ~~~  493 (634)
                      .+.
T Consensus       858 aRs  860 (1034)
T KOG4190|consen  858 ARS  860 (1034)
T ss_pred             ccc
Confidence            874

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.99  E-value=0.074  Score=55.89  Aligned_cols=253  Identities=9%  Similarity=-0.025  Sum_probs=144.4

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEE-EEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT-EWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~-~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      .|..|.|-..++-   +-.|..++.-      +...+|...|.+... .-..|.+.|.  ++.=--+.|       -.+.
T Consensus        71 ~g~~F~p~s~~~k---c~~la~gG~~------g~fd~~~~~tn~~h~~~cd~snn~v~--~~~r~cd~~-------~~~~  132 (344)
T KOG4532|consen   71 TGMTFTPGSFINK---CVTLADGGAS------GQFDLFACNTNDGHLYQCDVSNNDVT--LVKRYCDLK-------FPLN  132 (344)
T ss_pred             ecccccchHhhcc---ccEEEecccc------ceeeeecccCcccceeeecccccchh--hhhhhcccc-------ccee
Confidence            5777888765432   2234444442      689999998765433 3345555543  222112322       3588


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc--cccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM--RQAK  456 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~--r~ak  456 (634)
                      .++.|.|+++.++..+-..   ..-|.             ......+++.++++ .+++-+.-..|-+|-+..-  .-.+
T Consensus       133 i~sndht~k~~~~~~~s~~---~~~h~-------------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~  196 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGDSNK---FAVHN-------------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN  196 (344)
T ss_pred             eccCCcceeEEEEecCccc---ceeec-------------cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee
Confidence            8899999999988754210   11011             11224567889998 6888889999999986531  1112


Q ss_pred             ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036          457 TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH  535 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft  535 (634)
                      +.+..-++.=-+.+||......|. +.|+++.|||++.   .+.... +..            .-+|.|      .-.|.
T Consensus       197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~---~~tpm~-~~s------------strp~h------nGa~R  254 (344)
T KOG4532|consen  197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN---MATPMA-EIS------------STRPHH------NGAFR  254 (344)
T ss_pred             eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc---cccchh-hhc------------ccCCCC------CCceE
Confidence            234344555578899988888887 9999999999983   232211 111            111222      13455


Q ss_pred             cccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc---Ccc--ccC
Q 047036          536 GGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH---DKF--AVT  610 (634)
Q Consensus       536 ~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~---d~f--~~~  610 (634)
                      -++|+..   |...-++++--=.++.+=|+...++              |+  .|+..+ .+   .|+|   +.|  .|.
T Consensus       255 ~c~Fsl~---g~lDLLf~sEhfs~~hv~D~R~~~~--------------~q--~I~i~~-d~---~~~~~tq~ifgt~f~  311 (344)
T KOG4532|consen  255 VCRFSLY---GLLDLLFISEHFSRVHVVDTRNYVN--------------HQ--VIVIPD-DV---ERKHNTQHIFGTNFN  311 (344)
T ss_pred             EEEecCC---CcceEEEEecCcceEEEEEcccCce--------------ee--EEecCc-cc---ccccccccccccccc
Confidence            6667641   3223334444457788888874433              22  233222 22   1221   122  223


Q ss_pred             CCCCCCEEEEcCCceeeeeccCC
Q 047036          611 DSPEAPLVVATPMKVSSISLSGR  633 (634)
Q Consensus       611 ~~~~~~iivA~~~~v~~~~~~~~  633 (634)
                      .. ...+.|++...+.-.+|-.|
T Consensus       312 ~~-n~s~~v~~e~~~ae~ni~sr  333 (344)
T KOG4532|consen  312 NE-NESNDVKNELQGAEYNILSR  333 (344)
T ss_pred             CC-Ccccccccchhhheeecccc
Confidence            32 45789999999988888554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=96.97  E-value=0.016  Score=62.07  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ....|+-.|+..-..+     ..|.+|+++.-+--.+......++  ...++|||++       +++.+...|-.|.+|.
T Consensus        55 eW~ads~~ilC~~yk~-----~~vqvwsl~Qpew~ckIdeg~agl--s~~~WSPdgr-------hiL~tseF~lriTVWS  120 (447)
T KOG4497|consen   55 EWKADSCHILCVAYKD-----PKVQVWSLVQPEWYCKIDEGQAGL--SSISWSPDGR-------HILLTSEFDLRITVWS  120 (447)
T ss_pred             eeeccceeeeeeeecc-----ceEEEEEeecceeEEEeccCCCcc--eeeeECCCcc-------eEeeeecceeEEEEEE
Confidence            3445666677666543     689999999877666666555553  4559999942       6777888899999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC------------------------------
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL------------------------------  440 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~------------------------------  440 (634)
                      +.+..+.  -+. |              -+.++..++|+++| +.|.++.                              
T Consensus       121 L~t~~~~--~~~-~--------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg  183 (447)
T KOG4497|consen  121 LNTQKGY--LLP-H--------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG  183 (447)
T ss_pred             eccceeE--Eec-c--------------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence            9876432  111 1              11122344555655 3333332                              


Q ss_pred             ------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          441 ------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       441 ------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                            ++-|-+||.--  ..+...-.-+-.|..+.+||-|++|+. +.|+.+|+.+
T Consensus       184 ieWsPdg~~laVwd~~L--eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  184 IEWSPDGNWLAVWDNVL--EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ceECCCCcEEEEecchh--hheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence                  33455676321  122112223456899999999999998 8999998865

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.5  Score=51.25  Aligned_cols=222  Identities=15%  Similarity=0.192  Sum_probs=121.2

Q ss_pred             CCCeEEEec----CeeeEEEccCCceecce-eEEEecCCCC--------CcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          264 LDNSFLVSD----LGLQVYRNYNRGIHNKG-VSVRFDGGSS--------KIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       264 ~D~sfvv~G----~~igV~k~~~~gl~~~~-~~~~~~~~~~--------~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+++||+..    ..|.|+....+|..... ..+.-.+..+        .+...|+|++        +.|++..-.-   
T Consensus        98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--------~~l~v~DLG~---  166 (346)
T COG2706          98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--------RYLVVPDLGT---  166 (346)
T ss_pred             CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--------CEEEEeecCC---
Confidence            577777753    58888888777733322 1111111100        1344455555        4444332211   


Q ss_pred             CCCcEEEEeCCCCcEEEE----EeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEcCCCCceEEecccC
Q 047036          331 QAPGVQQLDIETGKIVTE----WKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~----lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                        ..|++++++.|++...    ++--. +-+ .+ .|+|++|+        .++- =-+++|-+|........+..|+.+
T Consensus       167 --Dri~~y~~~dg~L~~~~~~~v~~G~-GPR-Hi-~FHpn~k~--------aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         167 --DRIFLYDLDDGKLTPADPAEVKPGA-GPR-HI-VFHPNGKY--------AYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             --ceEEEEEcccCccccccccccCCCC-Ccc-eE-EEcCCCcE--------EEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence              2699999998886432    22222 222 34 99999665        3333 347899999877532223344322


Q ss_pred             CCCccccccccccccCcceEEEEECCCCeEEEEEC--CCcEEEEeccc--cc-cccccccCCCCCeEEEEECCCCCEEEE
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL--DGKIRLYSKTS--MR-QAKTAFPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~--DGtIRLWD~~t--~r-~akt~L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                      ...      -.+|.-.+...++..+++|++.-+|.  ...|-+|-+.-  ++ ......+-++..-+...|+|.|++|++
T Consensus       234 ~tl------P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia  307 (346)
T COG2706         234 DTL------PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA  307 (346)
T ss_pred             ccC------ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence            221      12344455567888999995444443  33677776542  21 011223456666799999999999998


Q ss_pred             -Ec-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEee
Q 047036          481 -TT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKL  520 (634)
Q Consensus       481 -S~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L  520 (634)
                       .. ...|.++-...  .+|++.....-..   .|.|-++++
T Consensus       308 a~q~sd~i~vf~~d~--~TG~L~~~~~~~~---~p~Pvcv~f  344 (346)
T COG2706         308 ANQKSDNITVFERDK--ETGRLTLLGRYAV---VPEPVCVKF  344 (346)
T ss_pred             EccCCCcEEEEEEcC--CCceEEecccccC---CCCcEEEEE
Confidence             43 35588886532  3565443333222   255555543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=96.91  E-value=0.0069  Score=63.88  Aligned_cols=108  Identities=13%  Similarity=0.088  Sum_probs=73.5

Q ss_pred             EEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCC-C-eEEEE
Q 047036          362 DITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-G-SIVVG  438 (634)
Q Consensus       362 sfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G-~IASG  438 (634)
                      .|++.        +..++++.+++.+-..+..... +.||+...           |+|.    ...+.|+.. . .+.+|
T Consensus       128 D~~~~--------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-----------He~E----~Wta~f~~~~pnlvytG  184 (339)
T KOG0280|consen  128 DISTS--------GTKIFVSDSRGSISGVYETEMVLEKVQTWKV-----------HEFE----AWTAKFSDKEPNLVYTG  184 (339)
T ss_pred             Eeecc--------CceEEEEcCCCcEEEEecceeeeeecccccc-----------ccee----eeeeecccCCCceEEec
Confidence            66765        5679999999999866543221 12344433           3332    223344433 2 68999


Q ss_pred             ECCCcEEEEecccccccc-ccccCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcc
Q 047036          439 SLDGKIRLYSKTSMRQAK-TAFPGLGSPITHVDVTY-DGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       439 S~DGtIRLWD~~t~r~ak-t~L~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~  492 (634)
                      |.||.++-||.+..+... +...-|...|.+|--|| ++.+|++ +.|.+|++||++
T Consensus       185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            999999999976321111 22345888999998884 6889999 999999999998

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.88  E-value=0.065  Score=59.50  Aligned_cols=115  Identities=18%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CC--eEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DN--RLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~--tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ..|+++|+.+|+. +.+..+... .+. -.|+||        |+.|+-.++ .+  .|+++|+.++..  +.+..     
T Consensus       257 ~~Iy~~dl~~g~~-~~LT~~~~~-d~~-p~~SPD--------G~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~-----  318 (419)
T PRK04043        257 PDIYLYDTNTKTL-TQITNYPGI-DVN-GNFVED--------DKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVF-----  318 (419)
T ss_pred             cEEEEEECCCCcE-EEcccCCCc-cCc-cEECCC--------CCEEEEEECCCCCceEEEEECCCCCe--EeCcc-----
Confidence            5799999998874 445444321 112 379999        455554443 22  688888876542  22310     


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECC---------CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL  479 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll  479 (634)
                          .+.     ..   .+++|+| +||..+..         ..|.+.|+.++. . +.|...+ ...+..|||||++|+
T Consensus       319 ----~g~-----~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~-~~LT~~~-~~~~p~~SPDG~~I~  383 (419)
T PRK04043        319 ----HGK-----NN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-I-RRLTANG-VNQFPRFSSDGGSIM  383 (419)
T ss_pred             ----CCC-----cC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-e-EECCCCC-CcCCeEECCCCCEEE
Confidence                011     11   2578998 66655543         368888987753 3 3344332 334689999999987


Q ss_pred             E
Q 047036          480 G  480 (634)
Q Consensus       480 S  480 (634)
                      -
T Consensus       384 f  384 (419)
T PRK04043        384 F  384 (419)
T ss_pred             E
Confidence            5

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.85  E-value=0.39  Score=47.28  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=81.5

Q ss_pred             CcEEEEeCCCCcEEEEE-eccCCCcc-eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEW-KFEKDGTD-ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~l-kgH~~~V~-I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +.|+.+|+++|+++.+. ........ .....+...        +..++.+..++.|..+|+++++ ++-....+.....
T Consensus        86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~  156 (238)
T PF13360_consen   86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--------GDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGS  156 (238)
T ss_dssp             SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--------TTEEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS
T ss_pred             eeeEecccCCcceeeeeccccccccccccccCceEe--------cCEEEEEeccCcEEEEecCCCc-EEEEeecCCCCCC
Confidence            58999999999998884 44321110 011122222        4688999999999999999875 3444332221100


Q ss_pred             ccccccccccCcceEEEEECCCCeEEEEECCCc-EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGK-IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL  488 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG~IASGS~DGt-IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL  488 (634)
                           ..+..-....+-....++.|.+++.+|. +.+ |..+++ .+-..+ .+. +..+ +.++|..|+. +.++.|..
T Consensus       157 -----~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~-~~w~~~-~~~-~~~~-~~~~~~~l~~~~~~~~l~~  226 (238)
T PF13360_consen  157 -----SPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE-KLWSKP-ISG-IYSL-PSVDGGTLYVTSSDGRLYA  226 (238)
T ss_dssp             -------EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE-EEEEEC-SS--ECEC-EECCCTEEEEEETTTEEEE
T ss_pred             -----cceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC-EEEEec-CCC-ccCC-ceeeCCEEEEEeCCCEEEE
Confidence                 0000001122323334558888888885 666 988874 223333 122 3332 4577777777 77999999


Q ss_pred             EEcc
Q 047036          489 ICTL  492 (634)
Q Consensus       489 WD~~  492 (634)
                      ||+.
T Consensus       227 ~d~~  230 (238)
T PF13360_consen  227 LDLK  230 (238)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9986

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=96.84  E-value=0.0058  Score=65.58  Aligned_cols=93  Identities=16%  Similarity=0.282  Sum_probs=67.7

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      ++-....+.-..+.++++|.+.|  ...++.|-        ...++||+.|..|-+||+-.+......+.+|+..|    
T Consensus       178 t~lr~~~~~~~~i~~~~~h~~~~--~~l~Wd~~--------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV----  243 (404)
T KOG1409|consen  178 TMLKLEQNGCQLITTFNGHTGEV--TCLKWDPG--------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV----  243 (404)
T ss_pred             EEEEEeecCCceEEEEcCcccce--EEEEEcCC--------CcEEEeccccCceEEEeccCCcceeeeeccchhhh----
Confidence            34445556678899999999976  46688875        47999999999999999976655556677776543    


Q ss_pred             cccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccc
Q 047036          414 QGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t  451 (634)
                                 ++++--+ --.+.|++.||.|-+||...
T Consensus       244 -----------~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  244 -----------QALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             -----------hhhhhhhhheeeeeccCCCeEEEEeccc
Confidence                       1111111 12689999999999999654

>smart00320 WD40 WD40 repeats

Probab=96.70  E-value=0.0023  Score=42.34  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                      ...+.+|..+|++++++|++.++++ +.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4456688999999999999999998 8999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.68  E-value=0.32  Score=52.12  Aligned_cols=153  Identities=16%  Similarity=0.183  Sum_probs=90.6

Q ss_pred             ccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          304 NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       304 ~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      .|+|++..|+..+...         ....+.|-+||+. +-+.+.+|..|.-+-. - +.+.||        ++.|+.+-
T Consensus        57 ~fs~dG~~LytTEnd~---------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-e-l~l~pD--------G~tLvVAN  117 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDY---------ETGRGVIGVYDAARGYRRIGEFPSHGIGPH-E-LLLMPD--------GETLVVAN  117 (305)
T ss_pred             EEcCCCCEEEEecccc---------CCCcEEEEEEECcCCcEEEeEecCCCcChh-h-EEEcCC--------CCEEEEEc
Confidence            4788887776655532         2234789999999 6689999988765532 2 367888        44444442


Q ss_pred             ------------------CCCeEEEEEcCCCCceEEe--cccCCCCccccccccccccCcceEEEEECCCCeEEEEECC-
Q 047036          383 ------------------DDNRLCQWDMRDRSGIVQN--MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD-  441 (634)
Q Consensus       383 ------------------~D~tIklWD~R~~~~~Vq~--l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D-  441 (634)
                                        .+-+|-+.|.+++. ++..  |.         ...    +...+.-++..++|.++.|... 
T Consensus       118 GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp---------~~~----~~lSiRHLa~~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  118 GGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELP---------PDL----HQLSIRHLAVDGDGTVAFAMQYQ  183 (305)
T ss_pred             CCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecC---------ccc----cccceeeEEecCCCcEEEEEecC
Confidence                              22233334444332 1111  10         001    2234667788888877766532 


Q ss_pred             C-------cEEEEecccccccccc-------ccCCCCCeEEEEECCCCCEEEEEc--CCcEEEEEcc
Q 047036          442 G-------KIRLYSKTSMRQAKTA-------FPGLGSPITHVDVTYDGKWILGTT--DTYLILICTL  492 (634)
Q Consensus       442 G-------tIRLWD~~t~r~akt~-------L~GH~d~ItsVdfSpDGk~LlSS~--D~tIrLWD~~  492 (634)
                      |       -|-+++...   ....       .......|=||+|+++|.+|++|+  -+.+.+||..
T Consensus       184 g~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  184 GDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             CCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence            2       133333221   1111       224567899999999999998855  6899999975

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.63  E-value=0.057  Score=56.69  Aligned_cols=137  Identities=12%  Similarity=0.089  Sum_probs=89.9

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCcc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVL  410 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~  410 (634)
                      |.|+++++++-+- . .+..|-..|++...+++||        +...++-++-+.|+++-+.... .++.+....+    
T Consensus       137 dht~k~~~~~~~s-~-~~~~h~~~~~~ns~~~snd--------~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t----  202 (344)
T KOG4532|consen  137 DHTGKTMVVSGDS-N-KFAVHNQNLTQNSLHYSND--------PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT----  202 (344)
T ss_pred             CcceeEEEEecCc-c-cceeeccccceeeeEEcCC--------CceEEEecCCCcceEEEeCCccceeeeeEeccc----
Confidence            3789988887432 2 2334444333445688998        5688899999999999876443 2333111000    


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc----ccccCCCCCeEEEEECCCCCE--EEEE-c
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK----TAFPGLGSPITHVDVTYDGKW--ILGT-T  482 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak----t~L~GH~d~ItsVdfSpDGk~--LlSS-~  482 (634)
                               +..-| |..++... .+|+|+.||++-+||++.++...    .+-|.|.+.|+.+.|||-|..  |+-| -
T Consensus       203 ---------~D~gF-~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh  272 (344)
T KOG4532|consen  203 ---------SDHGF-YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH  272 (344)
T ss_pred             ---------CCCce-eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence                     11112 44566655 89999999999999998754221    234579999999999987753  2224 4


Q ss_pred             CCcEEEEEcc
Q 047036          483 DTYLILICTL  492 (634)
Q Consensus       483 D~tIrLWD~~  492 (634)
                      -+++.+.|++
T Consensus       273 fs~~hv~D~R  282 (344)
T KOG4532|consen  273 FSRVHVVDTR  282 (344)
T ss_pred             cceEEEEEcc
Confidence            6889999986

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.57  E-value=0.0023  Score=73.80  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=91.0

Q ss_pred             EEEEeCCC--CcEE-EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          335 VQQLDIET--GKIV-TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       335 IrlWDleT--GK~V-~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      -.+|.+..  -+.| --+-||+..|  +-..|.|..       ...+++++-|-.+..||+|+....+....        
T Consensus        93 aiiwnlA~ss~~aIef~lhghsrai--td~n~~~q~-------pdVlatcsvdt~vh~wd~rSp~~p~ys~~--------  155 (1081)
T KOG0309|consen   93 AIIWNLAKSSSNAIEFVLHGHSRAI--TDINFNPQH-------PDVLATCSVDTYVHAWDMRSPHRPFYSTS--------  155 (1081)
T ss_pred             hhhhhhhcCCccceEEEEecCccce--eccccCCCC-------CcceeeccccccceeeeccCCCcceeeee--------
Confidence            45666542  2223 3467888775  233777752       36999999999999999998765543321        


Q ss_pred             cccccccccCcceEEEEEC-CCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-EcCCcEEE
Q 047036          412 WTQGHQFSRGTNFQCFAST-GDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-TTDTYLIL  488 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s-~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D~tIrL  488 (634)
                             .+...-+.|+.+ .++.+.+.|..+.|++||.+-+-.....+++|...|++++|..-- ..|.+ ++|++|+.
T Consensus       156 -------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  156 -------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             -------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence                   111112334444 356777778889999999876545667899999999999997432 23455 89999999


Q ss_pred             EEc
Q 047036          489 ICT  491 (634)
Q Consensus       489 WD~  491 (634)
                      ||.
T Consensus       229 w~y  231 (1081)
T KOG0309|consen  229 WDY  231 (1081)
T ss_pred             ecc
Confidence            985

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.51  E-value=0.17  Score=60.35  Aligned_cols=198  Identities=18%  Similarity=0.190  Sum_probs=109.5

Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCC-ccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccc-ccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSP-VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSM-RQAKT  457 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~-V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~-r~akt  457 (634)
                      .....+.|+..|+..+ ++|+...-|... |.      +|.....|..  .++ .....|=.++.|-.||.+-. +.+..
T Consensus       499 ~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~------~~~p~~K~aq--lt~-e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERG-KVVEEWKVHDDIPVV------DIAPDSKFAQ--LTN-EQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             cCCCCCceEEEecCCC-cEEEEeecCCCccee------Eecccccccc--cCC-CceEEEECCCceEEeccCCCCCceee
Confidence            3346789999999875 577776543321 21      1111111211  112 25677888889999997631 11110


Q ss_pred             -ccc--CCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCC-eeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036          458 -AFP--GLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGK-TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK  533 (634)
Q Consensus       458 -~L~--GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~-~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~  533 (634)
                       .+.  ..+....|++-+.+|...++|.+|-|||+|-.     |+ .++.|- .+|                    .+|.
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-----g~~AKT~lp-~lG--------------------~pI~  622 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-----GKRAKTALP-GLG--------------------DPII  622 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-----chhhhhcCC-CCC--------------------CCee
Confidence             111  24456889999999998888999999999932     21 111111 111                    1111


Q ss_pred             cccccccccccCCCCceEEEEEcCCeEEEEeChhhhccc---ccccccc-cCCcceeeEEEeccCCCe--------eeec
Q 047036          534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSA---HECYRNQ-QGLKSCYCYKIVLKDESI--------VESR  601 (634)
Q Consensus       534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~---~~~y~~~-~~~~~~~~Y~i~~~~~~i--------~~~~  601 (634)
                      -.-.     |-+|   +||++.+..|+++.+.. +..|+   ..-|... .+-+.+.|+.|...++.+        ..+.
T Consensus       623 ~iDv-----t~DG---kwilaTc~tyLlLi~t~-~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~  693 (794)
T PF08553_consen  623 GIDV-----TADG---KWILATCKTYLLLIDTL-IKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPIS  693 (794)
T ss_pred             EEEe-----cCCC---cEEEEeecceEEEEEEe-eecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCce
Confidence            1111     2225   89999999999999974 22221   0001000 113567888998877654        3345


Q ss_pred             cccCccccCCCCCCCEEEEcC
Q 047036          602 FMHDKFAVTDSPEAPLVVATP  622 (634)
Q Consensus       602 f~~d~f~~~~~~~~~iivA~~  622 (634)
                      |-.-.|..|.+..-.-|||+-
T Consensus       694 Ft~a~Fnt~~~~~E~~Ivtst  714 (794)
T PF08553_consen  694 FTPAKFNTGIGKQETSIVTST  714 (794)
T ss_pred             eeceEEecCCCCccceEEEec
Confidence            555555444333345555543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.49  E-value=0.52  Score=49.82  Aligned_cols=31  Identities=16%  Similarity=0.041  Sum_probs=28.3

Q ss_pred             CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          462 LGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      -.+.|..|.+||||+.||+ ..++.|.||++-
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence            3578999999999999999 999999999964

>smart00320 WD40 WD40 repeats

Probab=96.48  E-value=0.0088  Score=39.40  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       343 GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ++++..+..|...|  ..++|.|.        ++.+++|+.|+.|++||
T Consensus         2 ~~~~~~~~~~~~~i--~~~~~~~~--------~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPV--TSVAFSPD--------GKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCce--eEEEECCC--------CCEEEEecCCCeEEEcC
Confidence            57788899998875  45588886        57899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=96.46  E-value=0.1  Score=56.41  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=106.4

Q ss_pred             CCeEEEe-cCeeeEEEccCCceecceeEEEecCCCCCccccc--CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC-
Q 047036          265 DNSFLVS-DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNS--TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI-  340 (634)
Q Consensus       265 D~sfvv~-G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~f--sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl-  340 (634)
                      ++-|-+. +..++||+..+.|-.+.            .=..+  +|..+|-+..+...|+.+=.+      +++.-.-+ 
T Consensus        37 ~gv~~~s~drtvrv~lkrds~q~wp------------sI~~~mP~~~~~~~y~~e~~~L~vg~~n------gtvtefs~s   98 (404)
T KOG1409|consen   37 EGVISVSEDRTVRVWLKRDSGQYWP------------SIYHYMPSPCSAMEYVSESRRLYVGQDN------GTVTEFALS   98 (404)
T ss_pred             CCeEEccccceeeeEEeccccccCc------------hhhhhCCCCceEeeeeccceEEEEEEec------ceEEEEEhh
Confidence            4445554 46889999876652221            11112  344566666777666666544      57776643 


Q ss_pred             ---CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036          341 ---ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ  417 (634)
Q Consensus       341 ---eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~  417 (634)
                         +.--.++.+..|...|  ..+-|+-.        .+++++.+.|+.+---=.+.+..    |.              
T Consensus        99 edfnkm~~~r~~~~h~~~v--~~~if~~~--------~e~V~s~~~dk~~~~hc~e~~~~----lg--------------  150 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARV--SAIVFSLT--------HEWVLSTGKDKQFAWHCTESGNR----LG--------------  150 (404)
T ss_pred             hhhhhcchhhhhhhhhcce--eeEEecCC--------ceeEEEeccccceEEEeeccCCc----cc--------------
Confidence               4445678888998875  33345432        47999999887663322333221    21              


Q ss_pred             cccCcceEEEEECCCC---eEEEEECCCcE---EEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          418 FSRGTNFQCFASTGDG---SIVVGSLDGKI---RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       418 y~~~~~fssva~s~dG---~IASGS~DGtI---RLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                         .+.+.|.++..+-   +..+|-.-|.|   |+.. ... ...+++.||.++|+++++.|--+.|.| .+|..+.+||
T Consensus       151 ---~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~-~~~-~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  151 ---GYNFETPASALQFDALYAFVGDHSGQITMLKLEQ-NGC-QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             ---ceEeeccCCCCceeeEEEEecccccceEEEEEee-cCC-ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence               1122222222110   33344444444   3333 222 366789999999999999999999999 8999999999


Q ss_pred             cc
Q 047036          491 TL  492 (634)
Q Consensus       491 ~~  492 (634)
                      +-
T Consensus       226 ig  227 (404)
T KOG1409|consen  226 IG  227 (404)
T ss_pred             cc
Confidence            74

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.42  E-value=0.27  Score=53.21  Aligned_cols=163  Identities=16%  Similarity=0.222  Sum_probs=95.4

Q ss_pred             CCcEEEEeCC--CCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---C--eEEEEEcCCCCceEEec
Q 047036          332 APGVQQLDIE--TGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---N--RLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       332 ~~TIrlWDle--TGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~--tIklWD~R~~~~~Vq~l  402 (634)
                      ++-|+.|++.  +|++  ++.. .+...+  +=++|+|+        ++.|+++-.+   +  ..+.||.+.+.  +.-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v-~~~~np--tyl~~~~~--------~~~LY~v~~~~~~ggvaay~iD~~~G~--Lt~l   81 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLV-AELGNP--TYLAVNPD--------QRHLYVVNEPGEEGGVAAYRIDPDDGR--LTFL   81 (346)
T ss_pred             CCceEEEEEeCcccccchhhhc-cccCCC--ceEEECCC--------CCEEEEEEecCCcCcEEEEEEcCCCCe--EEEe
Confidence            4679999886  4543  2222 233332  33599998        4578888665   3  34677777553  1222


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccc-cc-cccccccCCCCC----------eEE
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTS-MR-QAKTAFPGLGSP----------ITH  468 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t-~r-~akt~L~GH~d~----------Its  468 (634)
                      . +           +.....+-+-++++++| +|++++ .-|.|+++=++. +. .....+..|..+          +-.
T Consensus        82 n-~-----------~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          82 N-R-----------QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             e-c-----------cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence            1 1           11112222567889999 677776 448899988743 21 011122345555          889


Q ss_pred             EEECCCCCEEEEEc--CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036          469 VDVTYDGKWILGTT--DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD  524 (634)
Q Consensus       469 VdfSpDGk~LlSS~--D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~  524 (634)
                      ..|+|||++|++..  -..|.++++.    +|++...-...+ ....-||-+.+.|..
T Consensus       150 a~~tP~~~~l~v~DLG~Dri~~y~~~----dg~L~~~~~~~v-~~G~GPRHi~FHpn~  202 (346)
T COG2706         150 ANFTPDGRYLVVPDLGTDRIFLYDLD----DGKLTPADPAEV-KPGAGPRHIVFHPNG  202 (346)
T ss_pred             eeeCCCCCEEEEeecCCceEEEEEcc----cCcccccccccc-CCCCCcceEEEcCCC
Confidence            99999999998832  2368888875    454322111112 223448999988876

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.40  E-value=0.52  Score=47.53  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=94.0

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec--cC-CCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF--EK-DGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg--H~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      |.++.+...+..++++...        .++++|+.+|++..-...  .. ......-+++.|+        |.+.++.+.
T Consensus        42 ~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--------G~ly~t~~~  105 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--------GNLYVTDSG  105 (246)
T ss_dssp             EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--------S-EEEEEEC
T ss_pred             CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--------CCEEEEecC
Confidence            6666666466666666643        477779999976554443  11 1111233467776        666666554


Q ss_pred             C--------CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccc
Q 047036          384 D--------NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       384 D--------~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r  453 (634)
                      .        +.|.++++. +.  +..+..          +     -..-..++++++| .| ++-+..+.|.-||.....
T Consensus       106 ~~~~~~~~~g~v~~~~~~-~~--~~~~~~----------~-----~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~  167 (246)
T PF08450_consen  106 GGGASGIDPGSVYRIDPD-GK--VTVVAD----------G-----LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG  167 (246)
T ss_dssp             CBCTTCGGSEEEEEEETT-SE--EEEEEE----------E-----ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CCccccccccceEEECCC-Ce--EEEEec----------C-----cccccceEECCcchheeecccccceeEEEeccccc
Confidence            4        568889987 32  222210          0     0112578999999 45 567889999999985311


Q ss_pred             c------ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036          454 Q------AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT  502 (634)
Q Consensus       454 ~------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~  502 (634)
                      .      ....+++.....-++++.++|+..++ -..+.|.++|.     +|+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p-----~G~~~~  218 (246)
T PF08450_consen  168 GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP-----DGKLLR  218 (246)
T ss_dssp             CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET-----TSCEEE
T ss_pred             cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC-----CccEEE
Confidence            1      11123333234789999999998888 67889999984     466543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.27  E-value=0.011  Score=67.14  Aligned_cols=70  Identities=21%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          420 RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       420 ~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ...++.|+|.+|+. .++.|+.||.|+|||...   ..+++.-+.-..+.|+++|+|..++. +..+-|.+||+.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTR---GVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCC---CeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            34567888999987 899999999999999754   23444445556789999999999998 778999999975

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.13  E-value=0.029  Score=70.39  Aligned_cols=139  Identities=10%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI  398 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~  398 (634)
                      ..++++.|      +.|++|--..|+.|-.|+.-... .++-..|+.+        |+....+-.||-|.+|.+..  ++
T Consensus      2222 ~Yltgs~d------gsv~~~~w~~~~~v~~~rt~g~s-~vtr~~f~~q--------Gnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2222 YYLTGSQD------GSVRMFEWGHGQQVVCFRTAGNS-RVTRSRFNHQ--------GNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred             eEEecCCC------ceEEEEeccCCCeEEEeeccCcc-hhhhhhhccc--------CCceeeeccCCceeecccCC--cc
Confidence            46677665      79999999999999888754432 2233356654        67788888999999999862  34


Q ss_pred             EEecccCCCCccccccccccccCcceEEEEECCCCeEEEE---ECCCcEEEEeccc--cccccccccCCCCCeEEEEECC
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVG---SLDGKIRLYSKTS--MRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASG---S~DGtIRLWD~~t--~r~akt~L~GH~d~ItsVdfSp  473 (634)
                      +...+.|+...          +.+.|-  +    ..+|++   +.++.+.|||..-  ++....  ..|-..++.+++-|
T Consensus      2285 ~~s~qchnk~~----------~Df~Fi--~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2285 YTSWQCHNKAL----------SDFRFI--G----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred             eeccccCCccc----------cceeee--e----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence            45555555432          222232  1    234544   4788999999542  221112  57889999999999


Q ss_pred             CCCEEEE-EcCCcEEEEEcc
Q 047036          474 DGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD~~  492 (634)
                      .-+.|+| +.++-|+|||++
T Consensus      2347 ~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             cceEEEecCCcCcEEEeehH
Confidence            9999999 999999999987

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.05  E-value=1.8  Score=53.07  Aligned_cols=67  Identities=7%  Similarity=0.101  Sum_probs=50.5

Q ss_pred             EEEEECCCC-eEEEEEC---CCcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036          425 QCFASTGDG-SIVVGSL---DGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILGTTDTYLILICT  491 (634)
Q Consensus       425 ssva~s~dG-~IASGS~---DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~  491 (634)
                      .+++.-|.| .||+.-.   .-.|-+|...+.|.-...|+  .....|..|.+++|+..||.-....|.||-+
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~  332 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTR  332 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEe
Confidence            356788998 5777654   57899999887653334454  4567899999999999999855556999975

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.01  E-value=0.095  Score=62.31  Aligned_cols=143  Identities=14%  Similarity=0.191  Sum_probs=98.0

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +++.+ ...+++++-.      +.|-..|+.+++..+.......+|  .+..-+          ++.+++|..-|+|.+=
T Consensus       142 ~~~~~-~~~~i~Gg~Q------~~li~~Dl~~~~e~r~~~v~a~~v--~imR~N----------nr~lf~G~t~G~V~Lr  202 (1118)
T KOG1275|consen  142 SLHMG-PSTLIMGGLQ------EKLIHIDLNTEKETRTTNVSASGV--TIMRYN----------NRNLFCGDTRGTVFLR  202 (1118)
T ss_pred             HhccC-Ccceeecchh------hheeeeecccceeeeeeeccCCce--EEEEec----------CcEEEeecccceEEee
Confidence            45553 3445555543      368889999999999988877665  343433          4789999999999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE---------CCCcEEEEecccccccccccc
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS---------LDGKIRLYSKTSMRQAKTAFP  460 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS---------~DGtIRLWD~~t~r~akt~L~  460 (634)
                      |+++- ..++++..|++.+.++                 +=.| .|++++         .|.-|++||++.+| +...++
T Consensus       203 D~~s~-~~iht~~aHs~siSDf-----------------Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~  263 (1118)
T KOG1275|consen  203 DPNSF-ETIHTFDAHSGSISDF-----------------DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQ  263 (1118)
T ss_pred             cCCcC-ceeeeeeccccceeee-----------------eccCCeEEEeecccccccccccchhhhhhhhhhh-ccCCcc
Confidence            99975 4578888887765322                 1122 444444         47789999999886 666665


Q ss_pred             CCCCCeEEEEECCCC--CEEEEEcCCcEEEEEcc
Q 047036          461 GLGSPITHVDVTYDG--KWILGTTDTYLILICTL  492 (634)
Q Consensus       461 GH~d~ItsVdfSpDG--k~LlSS~D~tIrLWD~~  492 (634)
                      =|-+| .-|.|.|-=  +.+++|+-++..+.|+.
T Consensus       264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             cccCc-hhhhhcccccceEEEEecccceeecccc
Confidence            55555 456666643  33444888888888854

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.99  E-value=0.0074  Score=62.88  Aligned_cols=69  Identities=13%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             eEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcc
Q 047036          424 FQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       424 fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~  492 (634)
                      ++++|..|..  .+++|+.||.|-|||.+.......+|..|..+|+-|-|.| ++..|.+ +.|+.|.-||..
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            6778887765  5789999999999998765445567889999999999997 5677777 999999999964

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.91  E-value=0.008  Score=70.70  Aligned_cols=82  Identities=23%  Similarity=0.358  Sum_probs=65.6

Q ss_pred             CcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-CC-cEEEEEcccccC
Q 047036          421 GTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-DT-YLILICTLFSDK  496 (634)
Q Consensus       421 ~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D~-tIrLWD~~~~~~  496 (634)
                      ..-|+|++|+.+. +|++|+..|.|++|++.++ +......+|+.+|+.|-=|-||..+++ +. .. -.-||++.   .
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~---s 1176 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS---S 1176 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhccc---c
Confidence            3568999999876 8999999999999999988 466778899999999999999999987 33 22 46799975   2


Q ss_pred             CCCeeeeecC
Q 047036          497 DGKTKTGFSG  506 (634)
Q Consensus       497 ~G~~~~gF~g  506 (634)
                      .|..+..|.+
T Consensus      1177 ~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1177 TGGPRHSFDE 1186 (1516)
T ss_pred             ccCccccccc
Confidence            4555555543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.72  E-value=0.94  Score=48.67  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=72.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-----eCCCeEEEEEcCCCCceEEecccCC-
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-----LDDNRLCQWDMRDRSGIVQNMVKGD-  406 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-----S~D~tIklWD~R~~~~~Vq~l~gh~-  406 (634)
                      ..+.+||..+|+.++.+....+.--.-=-.||||        |+.|++.     ...+.|-+||++.+-..+..+..|. 
T Consensus        28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d--------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI   99 (305)
T PF07433_consen   28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD--------GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI   99 (305)
T ss_pred             cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC--------CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc
Confidence            5788999999998866533222110001279999        6777775     5578999999983323344544322 


Q ss_pred             CCccccccccccccCcceEEEEECCCC-eEEEE--E----------------CCCcEEEEecccccccc--cccc--CCC
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG--S----------------LDGKIRLYSKTSMRQAK--TAFP--GLG  463 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG--S----------------~DGtIRLWD~~t~r~ak--t~L~--GH~  463 (634)
                      .|       |+         +...||| .|++|  +                .+-.+-+-|..+++ ..  ..|+  -|.
T Consensus       100 GP-------He---------l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~  162 (305)
T PF07433_consen  100 GP-------HE---------LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELPPDLHQ  162 (305)
T ss_pred             Ch-------hh---------EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecCccccc
Confidence            11       11         2345666 44443  2                33344444555543 22  2464  377


Q ss_pred             CCeEEEEECCCCCEEEE
Q 047036          464 SPITHVDVTYDGKWILG  480 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS  480 (634)
                      ..|++|++.+||..+.+
T Consensus       163 lSiRHLa~~~~G~V~~a  179 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFA  179 (305)
T ss_pred             cceeeEEecCCCcEEEE
Confidence            89999999999987665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.67  E-value=0.6  Score=50.78  Aligned_cols=139  Identities=18%  Similarity=0.219  Sum_probs=78.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCC--cce---eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDG--TDI---TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~--V~I---~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                      +.|+..|+++|+.+.++......  -.+   ..+.-+|-     +. +..++.++.++.+..+|+++++. +-..     
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~-----v~-~~~vy~~~~~g~l~ald~~tG~~-~W~~-----  282 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV-----VV-GGVVYALAYNGNLVALDLRSGQI-VWKR-----  282 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcE-----EE-CCEEEEEEcCCeEEEEECCCCCE-EEee-----
Confidence            57999999999987665422110  000   00011221     01 35788888999999999998653 2111     


Q ss_pred             CccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCC-eEEEEECCCCCEEEEEcCCcE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP-ITHVDVTYDGKWILGTTDTYL  486 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~-ItsVdfSpDGk~LlSS~D~tI  486 (634)
                             .  +..   ...++ -.+++|++++.+|.|..+|..+++ .+-..+..... ..+..+ .+|+.++.+.|++|
T Consensus       283 -------~--~~~---~~~~~-~~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l  347 (394)
T PRK11138        283 -------E--YGS---VNDFA-VDGGRIYLVDQNDRVYALDTRGGV-ELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYL  347 (394)
T ss_pred             -------c--CCC---ccCcE-EECCEEEEEcCCCeEEEEECCCCc-EEEcccccCCCcccCCEE-ECCEEEEEeCCCEE
Confidence                   0  000   01111 135688889999999999988764 22111111111 112222 25655555899999


Q ss_pred             EEEEcccccCCCCeee
Q 047036          487 ILICTLFSDKDGKTKT  502 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~  502 (634)
                      ..+|+.    +|+.+-
T Consensus       348 ~~ld~~----tG~~~~  359 (394)
T PRK11138        348 HWINRE----DGRFVA  359 (394)
T ss_pred             EEEECC----CCCEEE
Confidence            999975    576543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.60  E-value=0.27  Score=57.97  Aligned_cols=125  Identities=15%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      +|.+.|++.+.. |.. ++-..|+.     +     +.+      |+.++|||.||+|-+--+-+....           
T Consensus        56 tH~g~v~~~~~~-~~~-~~~~~~s~-----~-----~~~------Gey~asCS~DGkv~I~sl~~~~~~-----------  106 (846)
T KOG2066|consen   56 THRGAVYLTTCQ-GNP-KTNFDHSS-----S-----ILE------GEYVASCSDDGKVVIGSLFTDDEI-----------  106 (846)
T ss_pred             cccceEEEEecC-Ccc-cccccccc-----c-----ccC------CceEEEecCCCcEEEeeccCCccc-----------
Confidence            355889999876 555 44444542     1     211      799999999999998776654321           


Q ss_pred             cccccccccccCcceEEEEECCC------CeEEEEECCCcEEEEeccccccccc-cccCCCCCeEEEEECCCCCEEEEEc
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGD------GSIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPITHVDVTYDGKWILGTT  482 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~d------G~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~ItsVdfSpDGk~LlSS~  482 (634)
                            |++.-+.++-+++++|+      +++++|+.-| +-|+...=..+.+. .+..-.++|.+|.+.  |.+||=+.
T Consensus       107 ------~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan  177 (846)
T KOG2066|consen  107 ------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN  177 (846)
T ss_pred             ------eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence                  12223456778899887      4799999999 88998643322222 244445789998875  66666589


Q ss_pred             CCcEEEEEcc
Q 047036          483 DTYLILICTL  492 (634)
Q Consensus       483 D~tIrLWD~~  492 (634)
                      |.-|+++|+.
T Consensus       178 d~Gv~vyd~~  187 (846)
T KOG2066|consen  178 DDGVKVYDTP  187 (846)
T ss_pred             CCCcEEEecc
Confidence            9999999974

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.59  E-value=0.23  Score=53.99  Aligned_cols=127  Identities=17%  Similarity=0.225  Sum_probs=76.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.++.+|+.+|+.+-+...  .... .+ .+  .        +..++.++.++.|..+|+.++.. +-..          
T Consensus       266 g~l~ald~~tG~~~W~~~~--~~~~-~~-~~--~--------~~~vy~~~~~g~l~ald~~tG~~-~W~~----------  320 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREY--GSVN-DF-AV--D--------GGRIYLVDQNDRVYALDTRGGVE-LWSQ----------  320 (394)
T ss_pred             CeEEEEECCCCCEEEeecC--CCcc-Cc-EE--E--------CCEEEEEcCCCeEEEEECCCCcE-EEcc----------
Confidence            6899999999998754332  2110 11 11  1        46899999999999999987642 2111          


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                        .. . ....+++.+. -+|+|++++.||.|.+.|..+++ .+...+-++..+.+=-+-.+|+.++.+.|++|..+.
T Consensus       321 --~~-~-~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~-~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        321 --SD-L-LHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGR-FVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             --cc-c-CCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCC-EEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence              00 0 0001111111 26799999999999999998875 443332122233321112466666669999988775

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.48  E-value=0.072  Score=60.67  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=50.5

Q ss_pred             eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE
Q 047036          359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV  437 (634)
Q Consensus       359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS  437 (634)
                      .+++++|+        .+.++.|+.|++|.+||.+.+   +..+..               ....-+.++..|+| .|++
T Consensus       263 ~~ca~sp~--------E~kLvlGC~DgSiiLyD~~~~---~t~~~k---------------a~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  263 ICCARSPS--------EDKLVLGCEDGSIILYDTTRG---VTLLAK---------------AEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             eEEecCcc--------cceEEEEecCCeEEEEEcCCC---eeeeee---------------ecccceEEEEcCCCcEEEE
Confidence            45699998        579999999999999998754   222210               11223667889999 7899


Q ss_pred             EECCCcEEEEecc
Q 047036          438 GSLDGKIRLYSKT  450 (634)
Q Consensus       438 GS~DGtIRLWD~~  450 (634)
                      ||.-|.|.+||..
T Consensus       317 ~s~qGelQ~FD~A  329 (545)
T PF11768_consen  317 GSEQGELQCFDMA  329 (545)
T ss_pred             EcCCceEEEEEee
Confidence            9999999999964

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.41  E-value=0.15  Score=57.38  Aligned_cols=130  Identities=18%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      .+|+|.+++ ++-++-..+-.+.|  .-.+|.|.++      +=-+++|-.+-++-+.|+|.  +++..+..        
T Consensus       255 snLyl~~~~-e~~i~V~~~~~~pV--hdf~W~p~S~------~F~vi~g~~pa~~s~~~lr~--Nl~~~~Pe--------  315 (561)
T COG5354         255 SNLYLLRIT-ERSIPVEKDLKDPV--HDFTWEPLSS------RFAVISGYMPASVSVFDLRG--NLRFYFPE--------  315 (561)
T ss_pred             ceEEEEeec-ccccceeccccccc--eeeeecccCC------ceeEEecccccceeeccccc--ceEEecCC--------
Confidence            468999987 56555554445555  3448888854      22477778999999999985  34433321        


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-----
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-----  482 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-----  482 (634)
                        +   ..+    .+.|+|.+ +|+.++.|   |.|-+||..+.-....++.|.+  -.-++|||||+++.+ +.     
T Consensus       316 --~---~rN----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~  384 (561)
T COG5354         316 --Q---KRN----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLR  384 (561)
T ss_pred             --c---ccc----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccc
Confidence              1   111    23568887 78887766   6799999887322334666544  355789999999987 32     


Q ss_pred             -CCcEEEEEcc
Q 047036          483 -DTYLILICTL  492 (634)
Q Consensus       483 -D~tIrLWD~~  492 (634)
                       |+.|.|||+.
T Consensus       385 ~Dn~i~l~~v~  395 (561)
T COG5354         385 VDNSIKLWDVY  395 (561)
T ss_pred             cCcceEEEEec
Confidence             8999999974

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.28  E-value=0.023  Score=59.26  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=62.1

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      ..+.|++.--+.+..-+--.+.|  +.++-.|.    |   .+++++|+.|+.|-+||+|....++..|..|..+     
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v--~~l~~hp~----q---q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----  225 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAV--TALCSHPA----Q---QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----  225 (319)
T ss_pred             ceeeecccccccccccccccccc--hhhhCCcc----c---ccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----
Confidence            47788875433222111112224  34566664    3   5799999999999999999765555555555443     


Q ss_pred             cccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccc
Q 047036          414 QGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t  451 (634)
                                +.-+.|.|. + +|.++|.||.+--||..+
T Consensus       226 ----------i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  226 ----------IWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ----------hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                      445667664 4 899999999999999653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=0.37  Score=56.84  Aligned_cols=178  Identities=19%  Similarity=0.177  Sum_probs=107.9

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036          375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r  453 (634)
                      +..++.|..+|.|++.+...  .+ .+...|++                     ..-+| ++||||.||+|-+-.+-+.+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~---------------------~~~~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSS---------------------SILEGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             cceeeeccccceEEEEecCC--cc-cccccccc---------------------cccCCceEEEecCCCcEEEeeccCCc
Confidence            46899999999999998753  11 22212211                     13356 99999999999998876654


Q ss_pred             cccccccCCCCCeEEEEECCC-----CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccc
Q 047036          454 QAKTAFPGLGSPITHVDVTYD-----GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHL  527 (634)
Q Consensus       454 ~akt~L~GH~d~ItsVdfSpD-----Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~  527 (634)
                       ..+++. ..-||.+|+++||     .+..++ ++.+ |.|..-.              =++++++.  .|  .     .
T Consensus       105 -~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~--------------wlgnk~~v--~l--~-----~  158 (846)
T KOG2066|consen  105 -EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN--------------WLGNKDSV--VL--S-----E  158 (846)
T ss_pred             -cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh--------------hhcCccce--ee--e-----c
Confidence             444443 5679999999999     344555 7777 7776522              12332221  11  1     1


Q ss_pred             cCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          528 AGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       528 ~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                      .  .-.-...+|.     |   ..|+=+.|-.|.|+|...-.+  +              =.|+.-...+....| .+.-
T Consensus       159 ~--eG~I~~i~W~-----g---~lIAWand~Gv~vyd~~~~~~--l--------------~~i~~p~~~~R~e~f-pphl  211 (846)
T KOG2066|consen  159 G--EGPIHSIKWR-----G---NLIAWANDDGVKVYDTPTRQR--L--------------TNIPPPSQSVRPELF-PPHL  211 (846)
T ss_pred             C--ccceEEEEec-----C---cEEEEecCCCcEEEeccccce--e--------------eccCCCCCCCCcccC-CCce
Confidence            0  1111234443     3   466668888899999763221  1              135555555554555 3333


Q ss_pred             ccCCCCCCCEEEEcCCceeeeecc
Q 047036          608 AVTDSPEAPLVVATPMKVSSISLS  631 (634)
Q Consensus       608 ~~~~~~~~~iivA~~~~v~~~~~~  631 (634)
                      .+.+  +..+|+.=-+.|.-++|+
T Consensus       212 ~W~~--~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  212 HWQD--EDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             EecC--CCeEEEecCCeEEEEEEe
Confidence            4444  368888888888888776

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.16  E-value=0.27  Score=58.25  Aligned_cols=165  Identities=19%  Similarity=0.280  Sum_probs=94.9

Q ss_pred             eEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCC-eEEEEECCCCCEEEE-EcCC-----cEEEEEcccccC
Q 047036          424 FQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP-ITHVDVTYDGKWILG-TTDT-----YLILICTLFSDK  496 (634)
Q Consensus       424 fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~-ItsVdfSpDGk~LlS-S~D~-----tIrLWD~~~~~~  496 (634)
                      ++|+ .+..|.||.|+.||.|-+.+..-  +..+-+.+|... |..|-...+-.+|+| +.|.     +|++|+....+ 
T Consensus        28 isc~-~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-  103 (933)
T KOG2114|consen   28 ISCC-SSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-  103 (933)
T ss_pred             eeEE-cCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-
Confidence            4443 35556999999999999998532  244667777766 666766666678888 7653     69999976322 


Q ss_pred             CCCeeeeecCCCCCCCCCceeE---eecCCCccccCCCcccccccccccccCCCCceEEEEE-cCCeEEEEeChhhhccc
Q 047036          497 DGKTKTGFSGRMGNKIPAPRLL---KLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDFQQVKNSA  572 (634)
Q Consensus       497 ~G~~~~gF~gh~~~~~p~pr~L---~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl~~v~~~~  572 (634)
                                  ++. | |-++   ++.|.-     .+.+-+|+.+=.+-   .+-.+||.+ +++.|+.. =-.+++.+
T Consensus       104 ------------~n~-s-P~c~~~~ri~~~~-----np~~~~p~s~l~Vs---~~l~~Iv~Gf~nG~V~~~-~GDi~RDr  160 (933)
T KOG2114|consen  104 ------------KNN-S-PQCLYEHRIFTIK-----NPTNPSPASSLAVS---EDLKTIVCGFTNGLVICY-KGDILRDR  160 (933)
T ss_pred             ------------CCC-C-cceeeeeeeeccC-----CCCCCCcceEEEEE---ccccEEEEEecCcEEEEE-cCcchhcc
Confidence                        111 1 3333   544421     12223344332111   123566665 45554443 23333321


Q ss_pred             ccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCceeeeeccCC
Q 047036          573 HECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGR  633 (634)
Q Consensus       573 ~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~~  633 (634)
                              |.  -+.|..+. .+.|....|       ..++-..+.|||+..|.+.+++||
T Consensus       161 --------gs--r~~~~~~~-~~pITgL~~-------~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  161 --------GS--RQDYSHRG-KEPITGLAL-------RSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             --------cc--ceeeeccC-CCCceeeEE-------ecCCceeEEEEecceeEEEEecCC
Confidence                    11  23455444 578886665       222223489999999999999986

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=95.16  E-value=0.07  Score=57.34  Aligned_cols=119  Identities=12%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      .+-+=|.+|=++++-|.-=...+  .+ -++-|+       ..+|...+-|..|.+|++....= --.+..         
T Consensus        30 rlviRd~~tlq~~qlf~cldki~--yi-eW~ads-------~~ilC~~yk~~~vqvwsl~Qpew-~ckIde---------   89 (447)
T KOG4497|consen   30 RLVIRDSETLQLHQLFLCLDKIV--YI-EWKADS-------CHILCVAYKDPKVQVWSLVQPEW-YCKIDE---------   89 (447)
T ss_pred             EEEEeccchhhHHHHHHHHHHhh--he-eeeccc-------eeeeeeeeccceEEEEEeeccee-EEEecc---------
Confidence            46677777777666554433322  23 555552       23555667788999999875431 011211         


Q ss_pred             cccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036          414 QGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                            ....+++++.||+| + |.+.+.|-.|.+|.+.+.  ....++--...+.+++|+|||++.+-
T Consensus        90 ------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   90 ------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLLPHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             ------CCCcceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEecccccCceeEEECCCCceeee
Confidence                  12246788999999 4 667889999999998772  44556544445799999999998764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.84  E-value=1.6  Score=49.17  Aligned_cols=164  Identities=18%  Similarity=0.163  Sum_probs=94.5

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-----CCCcceeEEEEecCCCCC---CCCCCCEEEEEeCC
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-----KDGTDITMRDITNDTKSS---QLDPSESTFLGLDD  384 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-----~~~V~I~vvsfsPd~K~~---q~~~g~~laSGS~D  384 (634)
                      ++.|++.|+.+..       +.|+++|.+|-++ .++.-.     +...+    .|..-.||.   .|.+|+.+++-|. 
T Consensus       274 ~nsDGkrIvFq~~-------GdIylydP~td~l-ekldI~lpl~rk~k~~----k~~~pskyledfa~~~Gd~ia~VSR-  340 (668)
T COG4946         274 ANSDGKRIVFQNA-------GDIYLYDPETDSL-EKLDIGLPLDRKKKQP----KFVNPSKYLEDFAVVNGDYIALVSR-  340 (668)
T ss_pred             cCCCCcEEEEecC-------CcEEEeCCCcCcc-eeeecCCccccccccc----cccCHHHhhhhhccCCCcEEEEEec-
Confidence            4667777665543       4599999998654 333321     11101    111112321   1234788888765 


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCC-cEEEEeccccccccccccCCC
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDG-KIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DG-tIRLWD~~t~r~akt~L~GH~  463 (634)
                      +.+++.++-.+ ..+|.  +|...             +...-+...+. .+|.|..|| .|-+||..++. ++...++++
T Consensus       341 GkaFi~~~~~~-~~iqv--~~~~~-------------VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg  402 (668)
T COG4946         341 GKAFIMRPWDG-YSIQV--GKKGG-------------VRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG  402 (668)
T ss_pred             CcEEEECCCCC-eeEEc--CCCCc-------------eEEEEEccCCc-ceEEeccCCceEEEEecCCce-EEEeeCCcc
Confidence            56677776543 22322  22222             22232222333 689999999 89999999873 666555554


Q ss_pred             CCeEEEEECCCCCEEEEEcC-CcEEEEEccccc------CCCCeeeeecCCC
Q 047036          464 SPITHVDVTYDGKWILGTTD-TYLILICTLFSD------KDGKTKTGFSGRM  508 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlSS~D-~tIrLWD~~~~~------~~G~~~~gF~gh~  508 (634)
                       -|-+|.+||||+++|.+.| --|.++|+..++      ..-.++..|.=|-
T Consensus       403 -~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~  453 (668)
T COG4946         403 -NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP  453 (668)
T ss_pred             -ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence             6999999999999988665 346666654221      1233455666553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.71  E-value=0.17  Score=46.76  Aligned_cols=57  Identities=19%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             CCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          430 TGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       430 s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                      +.+|  .|++||.|..||+|+-.   .....++ -.+.|++|+-...+++..+...+||-+++
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYD   69 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEe
Confidence            4566  69999999999999953   3445554 35689999999988887778888888887

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.52  E-value=0.26  Score=57.36  Aligned_cols=128  Identities=20%  Similarity=0.197  Sum_probs=80.7

Q ss_pred             CcEEEEeCCC----C-cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc----------
Q 047036          333 PGVQQLDIET----G-KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG----------  397 (634)
Q Consensus       333 ~TIrlWDleT----G-K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~----------  397 (634)
                      ++|.+.|..+    | +++..+......   .-++++||+|       ..+++|.-+++|-+.|++....          
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsP---HGV~vSPDGk-------ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNP---HGVNTSPDGK-------YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCc---cceEECCCCC-------EEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence            5799999998    4 677776555442   2358999955       2566777899999999986332          


Q ss_pred             -eEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEecccc---------ccccccc-----cC
Q 047036          398 -IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSM---------RQAKTAF-----PG  461 (634)
Q Consensus       398 -~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~---------r~akt~L-----~G  461 (634)
                       ++....-          |     .-+ ...+|+++|. ..|--.|..|--||+...         ...+..+     +|
T Consensus       366 ~vvaevev----------G-----lGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg  429 (635)
T PRK02888        366 AVVAEPEL----------G-----LGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG  429 (635)
T ss_pred             eEEEeecc----------C-----CCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence             1211110          0     111 2346788884 566789999999997641         0112223     24


Q ss_pred             CCCCeEEEEECCCCCEEEE----EcCCcE
Q 047036          462 LGSPITHVDVTYDGKWILG----TTDTYL  486 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS----S~D~tI  486 (634)
                      |...-.+=.-.|||+||++    |.|.+|
T Consensus       430 h~~~~~g~t~~~dgk~l~~~nk~skdrfl  458 (635)
T PRK02888        430 HNHASMGETKEADGKWLVSLNKFSKDRFL  458 (635)
T ss_pred             eeeecCCCcCCCCCCEEEEcccccccccc
Confidence            4444344455899999998    446555

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.48  E-value=0.43  Score=53.40  Aligned_cols=121  Identities=21%  Similarity=0.268  Sum_probs=71.1

Q ss_pred             cEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE--EEEEcCCCCceEEecccCCCCc
Q 047036          334 GVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL--CQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       334 TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI--klWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      .|+++|+++|+.  +-++.+|...     -+|+||++       .++++...|+..  .+.|++.+..  ..|. +..  
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~-----P~fspDG~-------~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt-~~~--  281 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGA-----PAFSPDGS-------KLAFSSSRDGSPDIYLMDLDGKNL--PRLT-NGF--  281 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCC-----ccCCCCCC-------EEEEEECCCCCccEEEEcCCCCcc--eecc-cCC--
Confidence            599999999864  4456777642     38999954       467777777665  5557776542  2232 111  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEE-CCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                           +.+       +.-.++||| +||-.| ..|  .|-++|+.+......++.+-...  .-.+||||++|+- +. +
T Consensus       282 -----gi~-------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         282 -----GIN-------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             -----ccc-------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccC
Confidence                 110       122458899 565444 334  56677776642112223322222  7789999999997 53 4


Q ss_pred             Cc
Q 047036          484 TY  485 (634)
Q Consensus       484 ~t  485 (634)
                      +.
T Consensus       348 g~  349 (425)
T COG0823         348 GQ  349 (425)
T ss_pred             Cc
Confidence            44

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.20  E-value=2.9  Score=50.06  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=91.2

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCc-EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-----e
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGK-IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-----R  386 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK-~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-----t  386 (634)
                      .+..+-.|+.+..+        .++|=+.++. .++.|+.|..++ +..+-....        .+.|++-+.|.     .
T Consensus        31 ~~s~~~~vvigt~~--------G~V~~Ln~s~~~~~~fqa~~~si-v~~L~~~~~--------~~~L~sv~Ed~~~np~l   93 (933)
T KOG2114|consen   31 CSSSTGSVVIGTAD--------GRVVILNSSFQLIRGFQAYEQSI-VQFLYILNK--------QNFLFSVGEDEQGNPVL   93 (933)
T ss_pred             EcCCCceEEEeecc--------ccEEEecccceeeehheecchhh-hhHhhcccC--------ceEEEEEeecCCCCceE
Confidence            34444556666654        3445455554 459999998762 122122221        25677666554     5


Q ss_pred             EEEEEcCCC--CceEEecccCCCCcccccccccc-ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc----ccccc
Q 047036          387 LCQWDMRDR--SGIVQNMVKGDSPVLHWTQGHQF-SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR----QAKTA  458 (634)
Q Consensus       387 IklWD~R~~--~~~Vq~l~gh~s~V~~~~~g~~y-~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r----~akt~  458 (634)
                      |++||+...  +..-+.+..|.  +    ..+.+ ....+.++++.+.+- .||+|=.+|.|-++-..-.|    +....
T Consensus        94 lkiw~lek~~~n~sP~c~~~~r--i----~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~  167 (933)
T KOG2114|consen   94 LKIWDLEKVDKNNSPQCLYEHR--I----FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS  167 (933)
T ss_pred             EEEecccccCCCCCcceeeeee--e----eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence            999998743  11001111110  0    01111 134567888998876 79999999999999643221    12222


Q ss_pred             ccCCCCCeEEEEECCCCCEEE-EEcCCcEEEEEcc
Q 047036          459 FPGLGSPITHVDVTYDGKWIL-GTTDTYLILICTL  492 (634)
Q Consensus       459 L~GH~d~ItsVdfSpDGk~Ll-SS~D~tIrLWD~~  492 (634)
                      .+ -.+|||+|+|-.||+-++ +.+-+.|+++.+.
T Consensus       168 ~~-~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  168 HR-GKEPITGLALRSDGKSVLFVATTEQVMLYSLS  201 (933)
T ss_pred             cc-CCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence            33 468999999999999843 3556678888864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.17  E-value=1.7  Score=40.21  Aligned_cols=56  Identities=18%  Similarity=0.383  Sum_probs=43.0

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecc
Q 047036          376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKT  450 (634)
Q Consensus       376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~  450 (634)
                      ..|+.||.|..||+++-.   .++..+..                ...+++++....+++|-|-..|||-+|+..
T Consensus        16 ~eLlvGs~D~~IRvf~~~---e~~~Ei~e----------------~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD---EIVAEITE----------------TDKVTSLCSLGGGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             ceEEEecCCcEEEEEeCC---cEEEEEec----------------ccceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence            589999999999999853   34444431                223567777777899999999999999954

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.54  Score=51.84  Aligned_cols=81  Identities=19%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      +++.+|+|...       -+|...+-+      ++|+++|++|--++..+..|.-   ++..+|.-+.       .+.|+
T Consensus       196 IrdlafSp~~~-------GLl~~asl~------nkiki~dlet~~~vssy~a~~~---~wSC~wDlde-------~h~IY  252 (463)
T KOG1645|consen  196 IRDLAFSPFNE-------GLLGLASLG------NKIKIMDLETSCVVSSYIAYNQ---IWSCCWDLDE-------RHVIY  252 (463)
T ss_pred             hhhhccCcccc-------ceeeeeccC------ceEEEEecccceeeeheeccCC---ceeeeeccCC-------cceeE
Confidence            47788888753       134455543      6899999999999999999953   4667888773       36899


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~  403 (634)
                      .|...|.|.++|+|.....+..+.
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~  276 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELV  276 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhh
Confidence            999999999999997655555554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.98  E-value=0.26  Score=52.77  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             ceEEEEECCCC-eEEEEECCCcEEEEeccccccc----cccccCCC------------CCeEEEEECCCC---CEEEEEc
Q 047036          423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQA----KTAFPGLG------------SPITHVDVTYDG---KWILGTT  482 (634)
Q Consensus       423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~a----kt~L~GH~------------d~ItsVdfSpDG---k~LlSS~  482 (634)
                      .+++|-|..-| |||+|-.-|.|-||.....+-+    .+.|.+|.            ..|..|.+-.++   .+|+++.
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN  107 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN  107 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence            47888898888 8999998999999997543211    23456665            345666655554   4789999


Q ss_pred             CCcEEEEEcccccC----CCCeeeeecCCCC
Q 047036          483 DTYLILICTLFSDK----DGKTKTGFSGRMG  509 (634)
Q Consensus       483 D~tIrLWD~~~~~~----~G~~~~gF~gh~~  509 (634)
                      |++|+||-+.-++.    .+.+.-+|...++
T Consensus       108 dktiKlWKiyeknlk~va~nnls~~~~~~~~  138 (460)
T COG5170         108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMG  138 (460)
T ss_pred             CceeeeeeeecccchhhhccccccccccccC
Confidence            99999999875432    2333445555554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=93.86  E-value=0.17  Score=57.39  Aligned_cols=73  Identities=18%  Similarity=0.377  Sum_probs=59.3

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----  382 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----  382 (634)
                      |.+.+++++.+++|+.++-.. .+  +.+-+||+.+-|+|.+++.-..    ++..|+||        |+.++|+.    
T Consensus       313 pRN~~~fnp~g~ii~lAGFGN-L~--G~mEvwDv~n~K~i~~~~a~~t----t~~eW~Pd--------Ge~flTATTaPR  377 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGFGN-LP--GDMEVWDVPNRKLIAKFKAANT----TVFEWSPD--------GEYFLTATTAPR  377 (566)
T ss_pred             CccceEECCCCCEEEEeecCC-CC--CceEEEeccchhhccccccCCc----eEEEEcCC--------CcEEEEEecccc
Confidence            667889999999988887753 33  6799999999999999998764    46699999        67777665    


Q ss_pred             --CCCeEEEEEcCC
Q 047036          383 --DDNRLCQWDMRD  394 (634)
Q Consensus       383 --~D~tIklWD~R~  394 (634)
                        -||.++||+.-.
T Consensus       378 lrvdNg~KiwhytG  391 (566)
T KOG2315|consen  378 LRVDNGIKIWHYTG  391 (566)
T ss_pred             EEecCCeEEEEecC
Confidence              489999999863

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.62  E-value=0.16  Score=52.28  Aligned_cols=102  Identities=15%  Similarity=0.107  Sum_probs=68.5

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEE-EEECCCC-eEEEEECCCcEEEEecccc
Q 047036          375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQC-FASTGDG-SIVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fss-va~s~dG-~IASGS~DGtIRLWD~~t~  452 (634)
                      +..++.|+.+++|.+|.+...+.       |...+-        .....+.| +....++ +.-+|+.||.||.|+..-.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~-------~~d~~~--------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGA-------HSDRVC--------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             CceEEeecccceEEEecCCccch-------HHHhhh--------cccccceeccccccccceeEEeccCCceeeeccccC
Confidence            46799999999999999864322       111110        01112233 3334455 5678999999999997653


Q ss_pred             ccccccccCCC-CCeEEEEECCCCCEEEE---EcCCcEEEEEcc
Q 047036          453 RQAKTAFPGLG-SPITHVDVTYDGKWILG---TTDTYLILICTL  492 (634)
Q Consensus       453 r~akt~L~GH~-d~ItsVdfSpDGk~LlS---S~D~tIrLWD~~  492 (634)
                      + ..-..-+|+ .++..+.++.-++.|+.   |+|..++.|++.
T Consensus       135 k-~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  135 K-VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             c-eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            2 333445677 78888888888888875   689999999875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.43  E-value=9  Score=47.62  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      -+-.+.+-|+.....      +.|.+-|++++...--=.. .++  |.+.++|||        .+.++....+.+|-+.+
T Consensus        75 ~fl~d~~~i~v~~~~------G~iilvd~et~~~eivg~v-d~G--I~aaswS~D--------ee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   75 QFLADTNSICVITAL------GDIILVDPETLELEIVGNV-DNG--ISAASWSPD--------EELLALITGRQTLLFMT  137 (1265)
T ss_pred             EEecccceEEEEecC------CcEEEEcccccceeeeeec-cCc--eEEEeecCC--------CcEEEEEeCCcEEEEEe
Confidence            344555554444332      4688889998764322222 233  456699999        67888888888887755


Q ss_pred             c----CCCCceEEecccCCCCcc-cccc-ccccc----------------------cCcceEEEEECCCC-eEEE-----
Q 047036          392 M----RDRSGIVQNMVKGDSPVL-HWTQ-GHQFS----------------------RGTNFQCFASTGDG-SIVV-----  437 (634)
Q Consensus       392 ~----R~~~~~Vq~l~gh~s~V~-~~~~-g~~y~----------------------~~~~fssva~s~dG-~IAS-----  437 (634)
                      -    -..+.+-+...+-+..|. .|-. ..|+.                      ....=+++.+-.|| ++|+     
T Consensus       138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~  217 (1265)
T KOG1920|consen  138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES  217 (1265)
T ss_pred             ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence            3    211111000000000000 0100 00110                      01111347788899 7777     


Q ss_pred             EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE----EcCCcEEEEE
Q 047036          438 GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG----TTDTYLILIC  490 (634)
Q Consensus       438 GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS----S~D~tIrLWD  490 (634)
                      ...-..||+||..+ .-..+.-| -...=.++++-|.|.+|++    +.|+.|.++.
T Consensus       218 ~~~~RkirV~drEg-~Lns~se~-~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  218 ETGTRKIRVYDREG-ALNSTSEP-VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             cCCceeEEEecccc-hhhcccCc-ccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence            33448999999763 11111111 1111247899999999998    3467788886

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.42  E-value=0.053  Score=62.33  Aligned_cols=148  Identities=13%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccC---CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEK---DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~---~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      |.+.|++| -|+ --++..+.+||+.++  -...++....   .++    .++++. ++     ..++.+|...+.|.+.
T Consensus       114 Dtn~LAag-ldk-hrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gq----ns~cwl-rd-----~klvlaGm~sr~~~if  181 (783)
T KOG1008|consen  114 DTNHLAAG-LDK-HRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQ----NSVCWL-RD-----TKLVLAGMTSRSVHIF  181 (783)
T ss_pred             cHHHHHhh-hhh-hcccCCccceecccccCCCccccccccccccCc----cccccc-cC-----cchhhcccccchhhhh
Confidence            44555554 332 245678999999998  3333333222   222    233444 22     3588899999999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-C-CeEEEEECCCcEEEEec-cccccccccccCCCC---
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-D-GSIVVGSLDGKIRLYSK-TSMRQAKTAFPGLGS---  464 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-d-G~IASGS~DGtIRLWD~-~t~r~akt~L~GH~d---  464 (634)
                      |+|....-++.+.            .+|+     +-+...| . +|+++-+ ||.|-+||. ....+....+..-..   
T Consensus       182 dlRqs~~~~~svn------------Tk~v-----qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~  243 (783)
T KOG1008|consen  182 DLRQSLDSVSSVN------------TKYV-----QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKP  243 (783)
T ss_pred             hhhhhhhhhhhhh------------hhhc-----ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcc
Confidence            9994321111110            1121     2233455 3 3777766 999999993 222222222322222   


Q ss_pred             -CeEEEEECCCCCEEEE--Ec-CCcEEEEEccc
Q 047036          465 -PITHVDVTYDGKWILG--TT-DTYLILICTLF  493 (634)
Q Consensus       465 -~ItsVdfSpDGk~LlS--S~-D~tIrLWD~~~  493 (634)
                       .+..+++.|--.-+++  +. .+||+++|+..
T Consensus       244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence             3899999998766665  44 48999999864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.39  E-value=1.9  Score=46.32  Aligned_cols=133  Identities=14%  Similarity=0.056  Sum_probs=74.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|..||.++|+. +.|..+....  ++..+..         +.+|+++  +..++++|+..+.. +..+..-.      
T Consensus        47 ~~i~r~~~~~g~~-~~~~~p~~~~--~~~~~d~---------~g~Lv~~--~~g~~~~~~~~~~~-~t~~~~~~------  105 (307)
T COG3386          47 GRIHRLDPETGKK-RVFPSPGGFS--SGALIDA---------GGRLIAC--EHGVRLLDPDTGGK-ITLLAEPE------  105 (307)
T ss_pred             CeEEEecCCcCce-EEEECCCCcc--cceeecC---------CCeEEEE--ccccEEEeccCCce-eEEecccc------
Confidence            6899999988753 4444443321  2333333         2345543  34567778754432 22221100      


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECC------------CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLD------------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-  479 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~D------------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-  479 (634)
                       .++..   +.+.-+...++|.|..|...            |.|..+|.. + .....+.+|-..-++|+|||||+.|. 
T Consensus       106 -~~~~~---~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g-~~~~l~~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         106 -DGLPL---NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G-GVVRLLDDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             -CCCCc---CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C-CEEEeecCcEEecCceEECCCCCEEEE
Confidence             12211   23334455788887777665            334445542 3 24555666544458999999997765 


Q ss_pred             E-EcCCcEEEEEcc
Q 047036          480 G-TTDTYLILICTL  492 (634)
Q Consensus       480 S-S~D~tIrLWD~~  492 (634)
                      + |..+.|.-++.-
T Consensus       180 aDT~~~~i~r~~~d  193 (307)
T COG3386         180 ADTPANRIHRYDLD  193 (307)
T ss_pred             EeCCCCeEEEEecC
Confidence            5 777888888753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.13  E-value=1.5  Score=49.25  Aligned_cols=140  Identities=16%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      ..-+|+|++..|       +++...|.    .-.|+++|+.++.. ..|. |..+++ +--+|+||++       .++|+
T Consensus       241 ~~P~fspDG~~l-------~f~~~rdg----~~~iy~~dl~~~~~-~~Lt-~~~gi~-~~Ps~spdG~-------~ivf~  299 (425)
T COG0823         241 GAPAFSPDGSKL-------AFSSSRDG----SPDIYLMDLDGKNL-PRLT-NGFGIN-TSPSWSPDGS-------KIVFT  299 (425)
T ss_pred             CCccCCCCCCEE-------EEEECCCC----CccEEEEcCCCCcc-eecc-cCCccc-cCccCCCCCC-------EEEEE
Confidence            455677776433       23333332    24699999997764 3343 333332 2347899943       24555


Q ss_pred             EeCCCeEEE--EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CCc--EEEEecccccc
Q 047036          381 GLDDNRLCQ--WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGK--IRLYSKTSMRQ  454 (634)
Q Consensus       381 GS~D~tIkl--WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGt--IRLWD~~t~r~  454 (634)
                      .+..+.-.+  .|+..+.  ++.+.-        . +-.+      ++-..+|+| +||..+. +|.  |-+.|+.++. 
T Consensus       300 Sdr~G~p~I~~~~~~g~~--~~riT~--------~-~~~~------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~-  361 (425)
T COG0823         300 SDRGGRPQIYLYDLEGSQ--VTRLTF--------S-GGGN------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG-  361 (425)
T ss_pred             eCCCCCcceEEECCCCCc--eeEeec--------c-CCCC------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC-
Confidence            444555444  4554332  222210        0 0001      133458999 6776654 455  6666665432 


Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                      ..+.| .++.-+.+-+++|||++|..
T Consensus       362 ~~~~l-t~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         362 KIRIL-TSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             cEEEc-cccccCCCCCcCCCCceEEE
Confidence            12222 24444567789999999986

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.93  E-value=0.53  Score=54.86  Aligned_cols=148  Identities=14%  Similarity=0.134  Sum_probs=94.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEE-EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT-EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~-~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .+.+.....|.++++-      +.||++.-.+|+... +..| ..++ +++.+++++        ..++|.|+..+.|.+
T Consensus        39 Tc~dst~~~l~~GsS~------G~lyl~~R~~~~~~~~~~~~-~~~~-~~~~~vs~~--------e~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSA------GSVYLYNRHTGEMRKLKNEG-ATGI-TCVRSVSSV--------EYLVAAGTASGRVSV  102 (726)
T ss_pred             EEeecCCceEEEeccc------ceEEEEecCchhhhcccccC-ccce-EEEEEecch--------hHhhhhhcCCceEEe
Confidence            3444555566666664      789999988776543 2333 2232 467788887        468888999999988


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc---cccccccccCCCCC
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS---MRQAKTAFPGLGSP  465 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t---~r~akt~L~GH~d~  465 (634)
                      .-+..+...-+.+..|.          +-.++..++|++++++| ++.+|-.-|+|.+=-+.+   .......+-....+
T Consensus       103 ~ql~~~~p~~~~~~t~~----------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen  103 FQLNKELPRDLDYVTPC----------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             ehhhccCCCcceeeccc----------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence            87765432212221111          11257789999999999 899999999998877655   11122233344578


Q ss_pred             eEEEEECCCCCEEEEEcCCc
Q 047036          466 ITHVDVTYDGKWILGTTDTY  485 (634)
Q Consensus       466 ItsVdfSpDGk~LlSS~D~t  485 (634)
                      |.-|+... +..|+|++-..
T Consensus       173 IVQlD~~q-~~LLVStl~r~  191 (726)
T KOG3621|consen  173 IVQLDYLQ-SYLLVSTLTRC  191 (726)
T ss_pred             eEEeeccc-ceehHhhhhhh
Confidence            88888863 44455544433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=92.53  E-value=0.27  Score=55.95  Aligned_cols=73  Identities=19%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             EEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-----C------CcEEEEEcc
Q 047036          426 CFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-----D------TYLILICTL  492 (634)
Q Consensus       426 sva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-----D------~tIrLWD~~  492 (634)
                      -+-+||-| ||++=..-| |-||-..... ....|. |. .|.-|+|||+.+||++ |.     +      ..|+|||++
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGESFD-RIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCccHH-HHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            35679999 788877755 5699876543 234454 54 3899999999999998 64     1      679999997


Q ss_pred             cccCCCCeeeeecC
Q 047036          493 FSDKDGKTKTGFSG  506 (634)
Q Consensus       493 ~~~~~G~~~~gF~g  506 (634)
                          +|..+.+|.-
T Consensus       291 ----tG~lkrsF~~  300 (698)
T KOG2314|consen  291 ----TGLLKRSFPV  300 (698)
T ss_pred             ----ccchhcceec
Confidence                6888877764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.22  E-value=0.3  Score=58.14  Aligned_cols=143  Identities=12%  Similarity=0.126  Sum_probs=87.7

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-eEEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-RLCQWD  391 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-tIklWD  391 (634)
                      +.++.+.|+.+.-.      +.|+++++.+|.......+|...|  +  .+-|...+     +-+|.+.+... -.-+|+
T Consensus      1109 fs~~~~hL~vG~~~------Geik~~nv~sG~~e~s~ncH~Sav--T--~vePs~dg-----s~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHA------GEIKIFNVSSGSMEESVNCHQSAV--T--LVEPSVDG-----STQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             eecCCceEEeeecc------ceEEEEEccCcccccccccccccc--c--cccccCCc-----ceeeeeccccCchHHHhc
Confidence            34555556666543      789999999999999999999865  2  44453221     12344444433 678999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccC---CCCCeE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG---LGSPIT  467 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~G---H~d~It  467 (634)
                      +..-...++++.+                   -.|+-|+..- .-|.|..-....|||+++...+.+.|.+   ..-.=+
T Consensus      1174 ~~s~~~~~Hsf~e-------------------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE-------------------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred             cccccCccccccc-------------------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence            8753333333321                   1345555443 2345555567889999987544444442   223336


Q ss_pred             EEEECCCCCEEEEEcCCcEEEEEccc
Q 047036          468 HVDVTYDGKWILGTTDTYLILICTLF  493 (634)
Q Consensus       468 sVdfSpDGk~LlSS~D~tIrLWD~~~  493 (634)
                      ...|||+-+.|+-  |+  .|||+++
T Consensus      1235 ~a~FsP~D~LIln--dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1235 LAHFSPCDTLILN--DG--VLWDVRI 1256 (1516)
T ss_pred             ccccCCCcceEee--Cc--eeeeecc
Confidence            7889999888775  22  4799874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.11  E-value=17  Score=40.45  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      .|++++.. |+.+.++.=..+.+ |.+ .|+.+         +.|+.-..|+++++.|+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~i-v~~-~wt~~---------e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRI-VGM-GWTDD---------EELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCE-EEE-EECCC---------CeEEEEEcCCEEEEEeCC
Confidence            59999976 99988743222332 243 77764         678888899999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=90.47  E-value=29  Score=42.93  Aligned_cols=31  Identities=23%  Similarity=0.144  Sum_probs=27.7

Q ss_pred             CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          462 LGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ...+|..|+|++++..+++ ++|++|.+|...
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence            5579999999999998888 999999999854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.20  E-value=0.68  Score=55.09  Aligned_cols=69  Identities=13%  Similarity=0.090  Sum_probs=56.4

Q ss_pred             ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ..+++|+.|.. .||+|=.-|.|.+|...+.. ..+.-..|..+|..|+|||||..|++ -.-+.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            34668888888 68999999999999977632 33444469999999999999999999 677999999653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.10  E-value=3.9  Score=46.16  Aligned_cols=132  Identities=19%  Similarity=0.209  Sum_probs=65.9

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      +.+|+..+.       +.|.++|.++|++|++.....  |  .-+-|+++        +++++..+.+ ++.+.+-... 
T Consensus       117 G~LL~~~~~-------~~i~~yDw~~~~~i~~i~v~~--v--k~V~Ws~~--------g~~val~t~~-~i~il~~~~~-  175 (443)
T PF04053_consen  117 GNLLGVKSS-------DFICFYDWETGKLIRRIDVSA--V--KYVIWSDD--------GELVALVTKD-SIYILKYNLE-  175 (443)
T ss_dssp             SSSEEEEET-------TEEEEE-TTT--EEEEESS-E-----EEEEE-TT--------SSEEEEE-S--SEEEEEE-HH-
T ss_pred             CcEEEEECC-------CCEEEEEhhHcceeeEEecCC--C--cEEEEECC--------CCEEEEEeCC-eEEEEEecch-
Confidence            666776655       369999999999999998664  2  23488988        6788887744 7777774321 


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG  475 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG  475 (634)
                       .+....  .       .|-    ...|..+  +. ...|-||-.++.+-||...+ + .+..+.|....|.++   +.-
T Consensus       176 -~~~~~~--~-------~g~----e~~f~~~--~E~~~~IkSg~W~~d~fiYtT~~-~-lkYl~~Ge~~~i~~l---d~~  234 (443)
T PF04053_consen  176 -AVAAIP--E-------EGV----EDAFELI--HEISERIKSGCWVEDCFIYTTSN-H-LKYLVNGETGIIAHL---DKP  234 (443)
T ss_dssp             -HHHHBT--T-------TB-----GGGEEEE--EEE-S--SEEEEETTEEEEE-TT-E-EEEEETTEEEEEEE----SS-
T ss_pred             -hccccc--c-------cCc----hhceEEE--EEecceeEEEEEEcCEEEEEcCC-e-EEEEEcCCcceEEEc---CCc
Confidence             000000  0       010    0112211  22 34678888888899998665 4 666333433333333   333


Q ss_pred             CEEEEEc--CCcEEEEE
Q 047036          476 KWILGTT--DTYLILIC  490 (634)
Q Consensus       476 k~LlSS~--D~tIrLWD  490 (634)
                      -||+.-.  ++.|.+.|
T Consensus       235 ~yllgy~~~~~~ly~~D  251 (443)
T PF04053_consen  235 LYLLGYLPKENRLYLID  251 (443)
T ss_dssp             -EEEEEETTTTEEEEE-
T ss_pred             eEEEEEEccCCEEEEEE
Confidence            5555522  35555555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.09  E-value=0.99  Score=49.87  Aligned_cols=92  Identities=15%  Similarity=0.030  Sum_probs=63.3

Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      ++..+..+-+.++-+-+|...+  .-++|+|..       ..++..++-+++|++.|+++. ++|+....|         
T Consensus       175 v~~l~~~~fkssq~lp~~g~~I--rdlafSp~~-------~GLl~~asl~nkiki~dlet~-~~vssy~a~---------  235 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFI--RDLAFSPFN-------EGLLGLASLGNKIKIMDLETS-CVVSSYIAY---------  235 (463)
T ss_pred             eEEeccCCcchhhcccccchhh--hhhccCccc-------cceeeeeccCceEEEEecccc-eeeeheecc---------
Confidence            5566655555566666676654  345999972       238999999999999999985 445554322         


Q ss_pred             ccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc
Q 047036          415 GHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       415 g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~  452 (634)
                             ..+.++|+.-+.  +|..|-..|.|.+||++..
T Consensus       236 -------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  236 -------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             -------CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence                   223344554443  7999999999999997653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.03  E-value=4  Score=44.43  Aligned_cols=108  Identities=12%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             EEEEecCCCCCCCCCCCEEEEE-----eCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-
Q 047036          360 MRDITNDTKSSQLDPSESTFLG-----LDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-  433 (634)
Q Consensus       360 vvsfsPd~K~~q~~~g~~laSG-----S~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-  433 (634)
                      ..+++|+        ++.+|-+     +.-.+|++.|++++.-+...+.                 ...+..+++.++| 
T Consensus       128 ~~~~Spd--------g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-----------------~~~~~~~~W~~d~~  182 (414)
T PF02897_consen  128 GFSVSPD--------GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-----------------NPKFSSVSWSDDGK  182 (414)
T ss_dssp             EEEETTT--------SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-----------------EEESEEEEECTTSS
T ss_pred             eeeECCC--------CCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-----------------ccccceEEEeCCCC
Confidence            3478898        4555544     2335699999998743222221                 1223447888887 


Q ss_pred             eEEEEECCC-----------cEEEEeccccc-cccccccCCCCC--eEEEEECCCCCEEEE--Ec--C-CcEEEEEcc
Q 047036          434 SIVVGSLDG-----------KIRLYSKTSMR-QAKTAFPGLGSP--ITHVDVTYDGKWILG--TT--D-TYLILICTL  492 (634)
Q Consensus       434 ~IASGS~DG-----------tIRLWD~~t~r-~akt~L~GH~d~--ItsVdfSpDGk~LlS--S~--D-~tIrLWD~~  492 (634)
                      .|+-...+.           .|++|.+-+.. .....+.+...+  ..++..|+||+||+.  +.  + +.|.+.|+.
T Consensus       183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence            344333332           48888876642 112344443333  679999999999875  33  3 446777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.81  E-value=13  Score=39.62  Aligned_cols=127  Identities=18%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      |++.+.--|..+|+++-+-.  - +++|...++--         |++++.|...+.+.+.+..++.+ ++.+..      
T Consensus        31 Hs~~~~avd~~sG~~~We~i--l-g~RiE~sa~vv---------gdfVV~GCy~g~lYfl~~~tGs~-~w~f~~------   91 (354)
T KOG4649|consen   31 HSGIVIAVDPQSGNLIWEAI--L-GVRIECSAIVV---------GDFVVLGCYSGGLYFLCVKTGSQ-IWNFVI------   91 (354)
T ss_pred             CCceEEEecCCCCcEEeehh--h-CceeeeeeEEE---------CCEEEEEEccCcEEEEEecchhh-eeeeee------
Confidence            56789999999999875421  1 11222222221         57899999999999999998754 233320      


Q ss_pred             ccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEEEcCCc
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILGTTDTY  485 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlSS~D~t  485 (634)
                              -..+..++.+-...|.|..||.|+....-|..+. .+...++--+..-.+=++.| +|..-+++.-+.
T Consensus        92 --------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen   92 --------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             --------hhhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecCCCceEEEEeccce
Confidence                    0123345555555669999999999999998773 35554442222222334444 555444443333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.80  E-value=13  Score=44.56  Aligned_cols=72  Identities=15%  Similarity=0.057  Sum_probs=48.7

Q ss_pred             CcceEEEEECCCC-eEEEEECCCcEEEEecc-----c----cc---cccc------cc-cCCCCCeEEEEECCCC---CE
Q 047036          421 GTNFQCFASTGDG-SIVVGSLDGKIRLYSKT-----S----MR---QAKT------AF-PGLGSPITHVDVTYDG---KW  477 (634)
Q Consensus       421 ~~~fssva~s~dG-~IASGS~DGtIRLWD~~-----t----~r---~akt------~L-~GH~d~ItsVdfSpDG---k~  477 (634)
                      .+.+..+..++.| +||..|..|.+-|.=.+     +    ++   .|++      .+ ..++..|..+.|.|.+   ..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3456778889999 68888776655432211     0    11   1111      11 2456789999999984   88


Q ss_pred             EEE-EcCCcEEEEEcc
Q 047036          478 ILG-TTDTYLILICTL  492 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~  492 (634)
                      |+. +.|++||++|+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            988 999999999985

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=89.75  E-value=2.8  Score=49.74  Aligned_cols=157  Identities=14%  Similarity=0.064  Sum_probs=99.9

Q ss_pred             EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc--cccccccccCcceEEEEECCC---Ce
Q 047036          360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH--WTQGHQFSRGTNFQCFASTGD---GS  434 (634)
Q Consensus       360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~--~~~g~~y~~~~~fssva~s~d---G~  434 (634)
                      .++++|.         .+||-|| ...|.+.|.|+-+ .+|.+.-|.+.|+.  |+..     ..++.  -++|.   -.
T Consensus        20 A~Dw~~~---------GLiAygs-hslV~VVDs~s~q-~iqsie~h~s~V~~VrWap~-----~~p~~--llS~~~~~ll   81 (1062)
T KOG1912|consen   20 AADWSPS---------GLIAYGS-HSLVSVVDSRSLQ-LIQSIELHQSAVTSVRWAPA-----PSPRD--LLSPSSSQLL   81 (1062)
T ss_pred             ccccCcc---------ceEEEec-CceEEEEehhhhh-hhhccccCccceeEEEeccC-----CCchh--ccCcccccee
Confidence            3477774         4777776 5689999999864 46787766654421  2211     11111  12322   26


Q ss_pred             EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC---CCCE-EEE-EcCCcEEEEEcccccCCCCeeeeecCCCC
Q 047036          435 IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY---DGKW-ILG-TTDTYLILICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       435 IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp---DGk~-LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~  509 (634)
                      ||+|-..|.|-|||.... ....-|..|.++|..|++=|   |.+. |++ ..-++|.||++.    +|+..   =.|..
T Consensus        82 iAsaD~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~---Wk~~y  153 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKF---WKYDY  153 (1062)
T ss_pred             EEeccccCcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCcee---ecccc
Confidence            899999999999998775 46677888999999988764   4534 556 889999999975    45532   22221


Q ss_pred             CCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          510 NKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       510 ~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                                   .|...    -.|+.+-|+.       ...++.+.+++|.+=++-
T Consensus       154 -------------s~~iL----s~f~~DPfd~-------rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  154 -------------SHEIL----SCFRVDPFDS-------RHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             -------------CCcce----eeeeeCCCCc-------ceEEEEccCceEEEEecc
Confidence                         11111    1366666653       245666778888877764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=88.36  E-value=11  Score=43.56  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE
Q 047036          359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV  437 (634)
Q Consensus       359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS  437 (634)
                      +.+.|||-        |.+|+| -.-..|-+|--..-.. ++.+            .|.   +  +.-+.|||.. ||++
T Consensus       214 tyv~wSP~--------GTYL~t-~Hk~GI~lWGG~~f~r-~~RF------------~Hp---~--Vq~idfSP~EkYLVT  266 (698)
T KOG2314|consen  214 TYVRWSPK--------GTYLVT-FHKQGIALWGGESFDR-IQRF------------YHP---G--VQFIDFSPNEKYLVT  266 (698)
T ss_pred             eeEEecCC--------ceEEEE-EeccceeeecCccHHH-HHhc------------cCC---C--ceeeecCCccceEEE
Confidence            35688886        556665 4455677886432111 1222            122   2  2334678877 8888


Q ss_pred             EEC-----------CCcEEEEeccccccccccccC--CCCCeEE-EEECCCCCEEEEEcCCcEEEEEcc
Q 047036          438 GSL-----------DGKIRLYSKTSMRQAKTAFPG--LGSPITH-VDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       438 GS~-----------DGtIRLWD~~t~r~akt~L~G--H~d~Its-VdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      =|-           -..|++||+.+|. .+..|+.  -+.+++. +.+|.|++|+|.-.-++|.|+++.
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp  334 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETP  334 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccc-hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecC
Confidence            662           2578999999985 7777775  3334443 689999999999333688888864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=88.31  E-value=41  Score=36.87  Aligned_cols=153  Identities=14%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe--
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL--  382 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS--  382 (634)
                      +.|.+..+.....++.+...++      ++|.+.|+.+-+++....--...   .-++++|++        ..++.+.  
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~------~~v~vid~~~~~~~~~~~vG~~P---~~~~~~~~~--------~~vYV~n~~  136 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDS------NTVSVIDTATNTVLGSIPVGLGP---VGLAVDPDG--------KYVYVANAG  136 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCC------CeEEEEcCcccceeeEeeeccCC---ceEEECCCC--------CEEEEEecc
Confidence            4556655544444455555443      58999999988888875433332   234899984        3444443  


Q ss_pred             -CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEE-ECCCcEEEEeccccccccc-c
Q 047036          383 -DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG-SLDGKIRLYSKTSMRQAKT-A  458 (634)
Q Consensus       383 -~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG-S~DGtIRLWD~~t~r~akt-~  458 (634)
                       .++++-+.|..+.. +++++.               ....+ .-++++|+| .++++ +.++.|-+.|..+.. ... .
T Consensus       137 ~~~~~vsvid~~t~~-~~~~~~---------------vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~  198 (381)
T COG3391         137 NGNNTVSVIDAATNK-VTATIP---------------VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-VVRGS  198 (381)
T ss_pred             cCCceEEEEeCCCCe-EEEEEe---------------cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-eeccc
Confidence             37999999988754 333321               11123 457889998 45544 589999999976532 221 0


Q ss_pred             ---ccCCCCCeEEEEECCCCCEEEEE--cC--CcEEEEEcc
Q 047036          459 ---FPGLGSPITHVDVTYDGKWILGT--TD--TYLILICTL  492 (634)
Q Consensus       459 ---L~GH~d~ItsVdfSpDGk~LlSS--~D--~tIrLWD~~  492 (634)
                         .-+-+..-..+.++|||.++...  ..  +.+...|+.
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence               11223344789999999976553  33  578888865

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.29  E-value=45  Score=36.71  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=84.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc----cCCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV----KGDSP  408 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~----gh~s~  408 (634)
                      .+|-+-|++.+|++.+.....     |. -+-|.+       .+.+.+-+.||++....+...++..+...    .-.++
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PG-----C~-~iyP~~-------~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp  184 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPG-----CW-LIYPSG-------NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDP  184 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTS-----EE-EEEEEE-------TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-
T ss_pred             CeEEEEECCCCceeeeecCCC-----EE-EEEecC-------CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcc
Confidence            589999999999999998765     33 334542       24688889999999888875554332211    00111


Q ss_pred             ccccc-----ccccc--ccCcceE---------------------------------EEEECC-CCeEEEEE---CCC--
Q 047036          409 VLHWT-----QGHQF--SRGTNFQ---------------------------------CFASTG-DGSIVVGS---LDG--  442 (634)
Q Consensus       409 V~~~~-----~g~~y--~~~~~fs---------------------------------sva~s~-dG~IASGS---~DG--  442 (634)
                      +....     .++-|  ...-++.                                 .+|+.+ .++|.+--   .+|  
T Consensus       185 ~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH  264 (342)
T PF06433_consen  185 LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH  264 (342)
T ss_dssp             B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred             cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence            11100     01000  0000111                                 122322 22322211   111  


Q ss_pred             -----cEEEEeccccccccccccCCCCCeEEEEECCCCCE-EEE-Ec-CCcEEEEEcccccCCCCeeeeec
Q 047036          443 -----KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW-ILG-TT-DTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       443 -----tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~-LlS-S~-D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                           .|=+||+.+.+ .+..++ +..+|.+|.+|.|.+= |.+ +. +++|.++|+.    +|+.+....
T Consensus       265 KdpgteVWv~D~~t~k-rv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~----tGk~~~~~~  329 (342)
T PF06433_consen  265 KDPGTEVWVYDLKTHK-RVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA----TGKLVRSIE  329 (342)
T ss_dssp             TS-EEEEEEEETTTTE-EEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETT----T--EEEEE-
T ss_pred             cCCceEEEEEECCCCe-EEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc----CCcEEeehh
Confidence                 45566777753 555565 3457899999999984 445 44 7899999986    677665444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.99  E-value=32  Score=36.78  Aligned_cols=120  Identities=17%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             EEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccccc
Q 047036          337 QLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGH  416 (634)
Q Consensus       337 lWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~  416 (634)
                      +|-+..+|+|.-     .    ++ -+.||.|       .+++.||..+.+...|+.+++-.=..+              
T Consensus         2 rW~vd~~kCVDa-----s----pL-VV~~dsk-------T~v~igSHs~~~~avd~~sG~~~We~i--------------   50 (354)
T KOG4649|consen    2 RWAVDLRKCVDA-----S----PL-VVCNDSK-------TLVVIGSHSGIVIAVDPQSGNLIWEAI--------------   50 (354)
T ss_pred             ceeccchhhccC-----C----cE-EEecCCc-------eEEEEecCCceEEEecCCCCcEEeehh--------------
Confidence            577777787752     1    12 3456644       689999999999999999875211111              


Q ss_pred             ccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeE-EEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          417 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT-HVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       417 ~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It-sVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                         ...+|.|-|.--+.+++.|...|.+.+-+..++. ....+...+ .|. .-..-+||..|-. |.|+++...|.+
T Consensus        51 ---lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs-~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   51 ---LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS-QIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             ---hCceeeeeeEEECCEEEEEEccCcEEEEEecchh-heeeeeehh-hhccceEEcCCCceEEEecCCCcEEEeccc
Confidence               1233433333234479999999999999988874 233333222 232 3455688999988 899999999876

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=87.90  E-value=1.7  Score=44.97  Aligned_cols=62  Identities=10%  Similarity=-0.017  Sum_probs=40.4

Q ss_pred             CCeEEEEECCCcEEEEeccccccccccccCCCCC-eEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036          432 DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP-ITHVDVTYDGKWILG-TTDTYLILICTLF  493 (634)
Q Consensus       432 dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~-ItsVdfSpDGk~LlS-S~D~tIrLWD~~~  493 (634)
                      +-.+++|+.+|.|.+|.....-+.-.....--.+ ...|....++.+..+ +.|+.||.|.+.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence            3379999999999999976311111122222223 345566666667766 7899999999863

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.67  E-value=4.9  Score=45.22  Aligned_cols=151  Identities=16%  Similarity=0.099  Sum_probs=91.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.+|+.|++.-..+.-.+--.-  +=.+..+..  |+...  ..+.++.-.++.|.+.|.+...|.+.-..+        
T Consensus        76 hs~KvfDvEn~DminmiKL~~l--Pg~a~wv~s--kGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--------  141 (558)
T KOG0882|consen   76 HSVKVFDVENFDMINMIKLVDL--PGFAEWVTS--KGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--------  141 (558)
T ss_pred             cceeEEEeeccchhhhcccccC--CCceEEecC--CCCee--eeEEeecccCCCcEEECCcCCcCccceecc--------
Confidence            6799999887655533322111  001111211  11110  124445556799999999987653211110        


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc-cccccc-------------cccCCCCCeEEEEECCCCCE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-MRQAKT-------------AFPGLGSPITHVDVTYDGKW  477 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-~r~akt-------------~L~GH~d~ItsVdfSpDGk~  477 (634)
                            .+-.++.++-..+-| .++|.-..|.|.-|.... .+...+             -++-.....+++.|||+|..
T Consensus       142 ------lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q  215 (558)
T KOG0882|consen  142 ------LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ  215 (558)
T ss_pred             ------cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence                  122345666667777 577777889999999763 111111             12234466789999999999


Q ss_pred             EEE-EcCCcEEEEEcccccCCCCeeeeecCC
Q 047036          478 ILG-TTDTYLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                      |.+ +.|..||+.+.+    .|+.++.+.-.
T Consensus       216 istl~~DrkVR~F~~K----tGklvqeiDE~  242 (558)
T KOG0882|consen  216 ISTLNPDRKVRGFVFK----TGKLVQEIDEV  242 (558)
T ss_pred             ccccCcccEEEEEEec----cchhhhhhhcc
Confidence            999 999999999986    67777766543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.61  E-value=6.9  Score=44.32  Aligned_cols=132  Identities=20%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----------------
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----------------  382 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----------------  382 (634)
                      +++.+..+      +.|+..|+++|+++-+.......    + +.+|          ..++.++                
T Consensus       303 ~V~~g~~~------G~l~ald~~tG~~~W~~~~~~~~----~-~~~~----------~~vyv~~~~~~~~~~~~~~~~~~  361 (488)
T cd00216         303 AIVHAPKN------GFFYVLDRTTGKLISARPEVEQP----M-AYDP----------GLVYLGAFHIPLGLPPQKKKRCK  361 (488)
T ss_pred             EEEEECCC------ceEEEEECCCCcEeeEeEeeccc----c-ccCC----------ceEEEccccccccCcccccCCCC
Confidence            45555443      68999999999998776432111    1 2233          2333332                


Q ss_pred             --CCCeEEEEEcCCCCceEEecc--cCCCCccccccccccccCcce-EEEEECCCCeEEEEECCCcEEEEeccccccccc
Q 047036          383 --DDNRLCQWDMRDRSGIVQNMV--KGDSPVLHWTQGHQFSRGTNF-QCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       383 --~D~tIklWD~R~~~~~Vq~l~--gh~s~V~~~~~g~~y~~~~~f-ssva~s~dG~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                        .++.|.-.|+++++. +-...  .+...   |..+     ...+ ..++ ..++.|++|+.||.|+.+|..+++ .+-
T Consensus       362 ~~~~G~l~AlD~~tG~~-~W~~~~~~~~~~---~~~g-----~~~~~~~~~-~~g~~v~~g~~dG~l~ald~~tG~-~lW  430 (488)
T cd00216         362 KPGKGGLAALDPKTGKV-VWEKREGTIRDS---WNIG-----FPHWGGSLA-TAGNLVFAGAADGYFRAFDATTGK-ELW  430 (488)
T ss_pred             CCCceEEEEEeCCCCcE-eeEeeCCccccc---cccC-----CcccCcceE-ecCCeEEEECCCCeEEEEECCCCc-eee
Confidence              356788888887642 21111  00000   0000     0001 1222 234689999999999999998885 333


Q ss_pred             cccCCCCCeEE--EEECCCCCEEEEEcC
Q 047036          458 AFPGLGSPITH--VDVTYDGKWILGTTD  483 (634)
Q Consensus       458 ~L~GH~d~Its--VdfSpDGk~LlSS~D  483 (634)
                      .++ .+.+|.+  +.+..+|+..+.+.+
T Consensus       431 ~~~-~~~~~~a~P~~~~~~g~~yv~~~~  457 (488)
T cd00216         431 KFR-TPSGIQATPMTYEVNGKQYVGVMV  457 (488)
T ss_pred             EEE-CCCCceEcCEEEEeCCEEEEEEEe
Confidence            332 2233332  334456765554443

The alignment model contains an 8-bladed beta-propeller.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=87.56  E-value=42  Score=35.90  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=63.2

Q ss_pred             EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-----C-C
Q 047036          360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-----D-G  433 (634)
Q Consensus       360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-----d-G  433 (634)
                      -++||||        +.+||.+.+-++|++.|+-...  +-.+....+...      +  ....+..++|.+     . .
T Consensus        48 kl~WSpD--------~tlLa~a~S~G~i~vfdl~g~~--lf~I~p~~~~~~------d--~~~Aiagl~Fl~~~~s~~ws  109 (282)
T PF15492_consen   48 KLAWSPD--------CTLLAYAESTGTIRVFDLMGSE--LFVIPPAMSFPG------D--LSDAIAGLIFLEYKKSAQWS  109 (282)
T ss_pred             EEEECCC--------CcEEEEEcCCCeEEEEecccce--eEEcCcccccCC------c--cccceeeeEeeccccccccc
Confidence            3599999        6899999999999999987422  233432111110      1  112233333322     1 2


Q ss_pred             -eEEEEECCCcEEEEeccccc----ccccc--cc-CCCCCeEEEEECCCCCEEEE-Ec
Q 047036          434 -SIVVGSLDGKIRLYSKTSMR----QAKTA--FP-GLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       434 -~IASGS~DGtIRLWD~~t~r----~akt~--L~-GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                       .|.+=..+|.+|=|=+..++    +....  |. .+...|.++.+.|.=+.|+. +|
T Consensus       110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~  167 (282)
T PF15492_consen  110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC  167 (282)
T ss_pred             eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence             36777788888888763221    11122  22 34668999999999887765 54

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=1.6  Score=50.58  Aligned_cols=70  Identities=17%  Similarity=0.058  Sum_probs=54.5

Q ss_pred             EECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE-EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeee
Q 047036          428 ASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT-HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTG  503 (634)
Q Consensus       428 a~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It-sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~g  503 (634)
                      -.+|.- .||.+..+|.|-|.-..-  +..-++|-|+.+++ ++++-|||+.||. =.|++|+|.|+.    +|..+..
T Consensus        27 ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve----~~~~l~~   99 (665)
T KOG4640|consen   27 EWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE----KGGRLVS   99 (665)
T ss_pred             EEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc----CCCceec
Confidence            445554 788888899888877653  24566777888888 9999999999998 679999999986    5655555

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.13  E-value=8  Score=48.06  Aligned_cols=154  Identities=22%  Similarity=0.293  Sum_probs=86.8

Q ss_pred             eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc-------c
Q 047036          424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF-------S  494 (634)
Q Consensus       424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~-------~  494 (634)
                      +.++-|-.++ .|.++...|+|-|=|+.++  ......--.+.|.+.++|||+++++- |.+.+|.+..-.+       -
T Consensus        71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             eEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            3445555555 7888889999999997764  22222234567999999999999987 8888888875311       0


Q ss_pred             c------------CCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE----EcC-
Q 047036          495 D------------KDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA----TVG-  557 (634)
Q Consensus       495 ~------------~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt----Stg-  557 (634)
                      +            +-|+.-+.|.|.-|..++.......+...    +....=.+-..+| .|+|  +...|+    -+| 
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~----~~~~~~~~~~IsW-RgDg--~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE----QIEQDDHKTSISW-RGDG--EYFAVSFVESETGT  221 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhccccccccccccc----chhhccCCceEEE-ccCC--cEEEEEEEeccCCc
Confidence            0            11333334555444221211111111000    0001111222344 3333  555443    357 


Q ss_pred             CeEEEEeChhhhcccccccccccCCcceeeEE
Q 047036          558 KFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK  589 (634)
Q Consensus       558 ~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~  589 (634)
                      +.+.|||-+..|+..-.+   ++|+..|...+
T Consensus       222 RkirV~drEg~Lns~se~---~~~l~~~LsWk  250 (1265)
T KOG1920|consen  222 RKIRVYDREGALNSTSEP---VEGLQHSLSWK  250 (1265)
T ss_pred             eeEEEecccchhhcccCc---ccccccceeec
Confidence            889999999888755543   57777776554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=87.10  E-value=0.83  Score=51.67  Aligned_cols=78  Identities=10%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             ceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC---------------cE
Q 047036          423 NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT---------------YL  486 (634)
Q Consensus       423 ~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~---------------tI  486 (634)
                      +...+++||.|..+....-.-|.+|+....- ....++ |. -|.-++|||.|+||++ +...               .+
T Consensus        34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKA-KLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             chhheeecCcchheehhhccceEEccccchh-heeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            4566788999954444445678999976542 223343 43 5899999999999998 6533               48


Q ss_pred             EEEEcccccCCCCeeeeecCC
Q 047036          487 ILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh  507 (634)
                      .+||+.    .|..+.+|.+.
T Consensus       111 ~vwd~~----sg~iv~sf~~~  127 (561)
T COG5354         111 FVWDIA----SGMIVFSFNGI  127 (561)
T ss_pred             eEEecc----CceeEeecccc
Confidence            999986    57777777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.72  E-value=11  Score=42.47  Aligned_cols=138  Identities=12%  Similarity=0.041  Sum_probs=68.5

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      +-|.. |-|++.+++++.+++       +.-.+......+....  |...    .. .|.+.         ...|+--..
T Consensus        33 ~~p~~-ls~npngr~v~V~g~-------geY~iyt~~~~r~k~~--G~g~----~~-vw~~~---------n~yAv~~~~   88 (443)
T PF04053_consen   33 IYPQS-LSHNPNGRFVLVCGD-------GEYEIYTALAWRNKAF--GSGL----SF-VWSSR---------NRYAVLESS   88 (443)
T ss_dssp             S--SE-EEE-TTSSEEEEEET-------TEEEEEETTTTEEEEE--EE-S----EE-EE-TS---------SEEEEE-TT
T ss_pred             cCCee-EEECCCCCEEEEEcC-------CEEEEEEccCCccccc--Ccee----EE-EEecC---------ccEEEEECC
Confidence            34554 557778888777655       3455555333333332  3332    22 56664         234554557


Q ss_pred             CeEEEE-EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCC
Q 047036          385 NRLCQW-DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       385 ~tIklW-D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH  462 (634)
                      ++|++. +.....  +..+                .....+..+.  + | .|++.+.+ .|.+||+.+++ ....+.- 
T Consensus        89 ~~I~I~kn~~~~~--~k~i----------------~~~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v-  144 (443)
T PF04053_consen   89 STIKIYKNFKNEV--VKSI----------------KLPFSVEKIF--G-GNLLGVKSSD-FICFYDWETGK-LIRRIDV-  144 (443)
T ss_dssp             S-EEEEETTEE-T--T---------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS-
T ss_pred             CeEEEEEcCcccc--ceEE----------------cCCcccceEE--c-CcEEEEECCC-CEEEEEhhHcc-eeeEEec-
Confidence            777775 332111  0111                0111122222  2 6 45555544 89999999864 6666652 


Q ss_pred             CCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036          463 GSPITHVDVTYDGKWILGTTDTYLILICT  491 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlSS~D~tIrLWD~  491 (634)
                       .+|..|-+|++|.+++-.++.++.|++-
T Consensus       145 -~~vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  145 -SAVKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             --E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             -CCCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence             2499999999999999877888888874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.62  E-value=0.73  Score=51.52  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=57.2

Q ss_pred             cccCcceEEEEECCCCeEEEEECCCcEEEEecccc--ccccccccCCCCCeEEEEECCCCCEEEE-Ec-CCcEEEEEcc
Q 047036          418 FSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSM--RQAKTAFPGLGSPITHVDVTYDGKWILG-TT-DTYLILICTL  492 (634)
Q Consensus       418 y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~--r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D~tIrLWD~~  492 (634)
                      |.+.-.++.++.+...++.+||.||-+|.|-....  -.....+..|-..|.+|++|.||....| +. |..++++|+.
T Consensus         6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            33444455555566678999999999999985431  1233456689999999999999988888 66 8999999976

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=86.46  E-value=50  Score=36.25  Aligned_cols=159  Identities=16%  Similarity=0.171  Sum_probs=90.5

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      ++..-+............-. ..+ .-+++++++       ....+....+++|.+.|..+... ++.+.     +    
T Consensus        54 ~~~~~~~~~n~~~~~~~~g~-~~p-~~i~v~~~~-------~~vyv~~~~~~~v~vid~~~~~~-~~~~~-----v----  114 (381)
T COG3391          54 DVSVIDATSNTVTQSLSVGG-VYP-AGVAVNPAG-------NKVYVTTGDSNTVSVIDTATNTV-LGSIP-----V----  114 (381)
T ss_pred             eeeecccccceeeeeccCCC-ccc-cceeeCCCC-------CeEEEecCCCCeEEEEcCcccce-eeEee-----e----
Confidence            46666666333333222221 111 123667762       23566666789999999776543 23321     0    


Q ss_pred             cccccccCcceEEEEECCCC-eEEEEEC---CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036          414 QGHQFSRGTNFQCFASTGDG-SIVVGSL---DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI  487 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~IASGS~---DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr  487 (634)
                       |.      .-..+++++++ .+.++..   +++|-+.|..+.+ ....++-=..| ..++|+|+|..+..  +.+++|.
T Consensus       115 -G~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         115 -GL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             -cc------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence             11      12356778887 6655544   7999999988764 33334422245 99999999997765  5699999


Q ss_pred             EEEcccccCCCCeeee-ecCCCCCCCCCceeEeecCCCc
Q 047036          488 LICTLFSDKDGKTKTG-FSGRMGNKIPAPRLLKLTPLDS  525 (634)
Q Consensus       488 LWD~~~~~~~G~~~~g-F~gh~~~~~p~pr~L~L~Pe~~  525 (634)
                      ++|+.     +..+.. ..+..-...+.|+.+.+.|...
T Consensus       186 vi~~~-----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~  219 (381)
T COG3391         186 VIDTS-----GNSVVRGSVGSLVGVGTGPAGIAVDPDGN  219 (381)
T ss_pred             EEeCC-----CcceeccccccccccCCCCceEEECCCCC
Confidence            99954     222221 1110112234566677766654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=85.84  E-value=14  Score=42.46  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             CCCCeEEEEECCCcEEEEeccccc
Q 047036          430 TGDGSIVVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       430 s~dG~IASGS~DGtIRLWD~~t~r  453 (634)
                      +.++.+++|+.||.++.+|..+++
T Consensus       470 t~g~lvf~g~~~G~l~a~D~~TGe  493 (527)
T TIGR03075       470 TAGDLVFYGTLEGYFKAFDAKTGE  493 (527)
T ss_pred             ECCcEEEEECCCCeEEEEECCCCC
Confidence            455677789999999999999985

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.95  E-value=1.3  Score=54.12  Aligned_cols=102  Identities=18%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036          375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r  453 (634)
                      +-.++.|++.+-|-.-|.+.-  + .-+  |      |..    ....+++|+||+.+| .++.|=.+|-|.+||....+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n--L-~~~--~------~ne----~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN--L-GPL--H------QNE----RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc--c-chh--h------cCC----ccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence            346889999999988888642  1 101  1      111    134578999999999 67888999999999987643


Q ss_pred             cccccccCCCCCeEE---EEECCCCCEEEEEcCCcEEEEEccc
Q 047036          454 QAKTAFPGLGSPITH---VDVTYDGKWILGTTDTYLILICTLF  493 (634)
Q Consensus       454 ~akt~L~GH~d~Its---VdfSpDGk~LlSS~D~tIrLWD~~~  493 (634)
                       ..+.|.-|+.|.++   +..+.++..+++ .|+-=.+|...+
T Consensus       164 -~l~~i~e~~ap~t~vi~v~~t~~nS~llt-~D~~Gsf~~lv~  204 (1206)
T KOG2079|consen  164 -ILKVITEHGAPVTGVIFVGRTSQNSKLLT-SDTGGSFWKLVF  204 (1206)
T ss_pred             -ceeeeeecCCccceEEEEEEeCCCcEEEE-ccCCCceEEEEe
Confidence             55666667766555   455566664444 333333676543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=84.72  E-value=29  Score=35.28  Aligned_cols=58  Identities=22%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          432 DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       432 dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      +.+|++|..+| |.+|+....... +.+. +..+|..|.+-|+=+.|+.=+|++|.++++.
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~-~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~   64 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKP-TRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLD   64 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccc-eeEe-ecceEEEEEEecccCEEEEEcCCccEEEEch
Confidence            34899999999 899998322212 2222 2334999999999999999667999999975

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.66  E-value=11  Score=38.67  Aligned_cols=61  Identities=10%  Similarity=0.237  Sum_probs=41.8

Q ss_pred             EECCCCeEEEEECCCcEEEEecccc-ccccccccCCCCCeEEEEECCCCCEEEE--E--cCC---cEEEE
Q 047036          428 ASTGDGSIVVGSLDGKIRLYSKTSM-RQAKTAFPGLGSPITHVDVTYDGKWILG--T--TDT---YLILI  489 (634)
Q Consensus       428 a~s~dG~IASGS~DGtIRLWD~~t~-r~akt~L~GH~d~ItsVdfSpDGk~LlS--S--~D~---tIrLW  489 (634)
                      +..+.+.|.++..-+.|.+|++.+. -+...+|+-. +.|..+..+.-|.|||+  .  ...   ++|++
T Consensus        24 c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   24 CCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             eccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            3444344444455678999998731 1244567654 78999999999999998  2  234   77886

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=84.33  E-value=27  Score=39.54  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=37.0

Q ss_pred             CCCcEEEEeCCCCcEEEEEec-cCCCc--ce-eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          331 QAPGVQQLDIETGKIVTEWKF-EKDGT--DI-TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkg-H~~~V--~I-~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      ++++|+-.|++||+++-+++. +.+..  .. ....+.+-...... +...++.|+.++.|...|+++++
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~-~~~~V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK-PVPAIVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC-eeEEEEEECCCceEEEEECCCCc
Confidence            345899999999999877642 21100  00 00011110000000 01268889999999999999875

The alignment model contains an 8-bladed beta-propeller.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.72  E-value=4.6  Score=47.68  Aligned_cols=139  Identities=15%  Similarity=0.183  Sum_probs=86.1

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCc---------------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGK---------------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSES  377 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK---------------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~  377 (634)
                      ++.++..|..++.|      +.+++.-+.|-.               +-+++.||...|  -++.++-.        .+.
T Consensus        22 WNke~gyIAcgG~d------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV--~vvTWNe~--------~QK   85 (1189)
T KOG2041|consen   22 WNKESGYIACGGAD------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASV--MVVTWNEN--------NQK   85 (1189)
T ss_pred             EcccCCeEEecccc------ceeEEEEccccCCcccccccccccccchhhhhccCcceE--EEEEeccc--------ccc
Confidence            45677778888776      678877665431               235789999987  47788765        355


Q ss_pred             EEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEEC----------CCCeEEEEECCCcEEEE
Q 047036          378 TFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAST----------GDGSIVVGSLDGKIRLY  447 (634)
Q Consensus       378 laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s----------~dG~IASGS~DGtIRLW  447 (634)
                      |-|.-.+|-|.+|=+-.+.= ...+...             ..+..+.+++.+          .||-|++||.||. |+|
T Consensus        86 LTtSDt~GlIiVWmlykgsW-~EEMiNn-------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIw  150 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSW-CEEMINN-------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIW  150 (1189)
T ss_pred             ccccCCCceEEEEeeecccH-HHHHhhC-------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eec
Confidence            66667789999998754310 0001000             001112223333          4566677777776 777


Q ss_pred             eccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          448 SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       448 D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ..    ..+-++      ..+|-+|+|-+.++. -..+-+.|+|.+
T Consensus       151 gK----eLkg~~------l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  151 GK----ELKGQL------LAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             ch----hcchhe------ccceeecccHHHHHhhhcCCcEEEeccc
Confidence            62    222222      247899999999888 667888899853

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.70  E-value=2.1  Score=52.27  Aligned_cols=69  Identities=20%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             eEEEEECCCcEEEEeccccccccccc--cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          434 SIVVGSLDGKIRLYSKTSMRQAKTAF--PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       434 ~IASGS~DGtIRLWD~~t~r~akt~L--~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      .||.|+.-|.|-+.|..+ + .....  ..-+.||++|+|+.||+.+++ =.+|-|.+||+.    .++.++.|.-|.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~-n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTG-N-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG  172 (1206)
T ss_pred             eEEEEcCchhhhhhhhhc-c-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence            689999999999999765 1 22211  124579999999999999999 579999999975    566666666443

>PRK13616 lipoprotein LpqB; Provisional

Probab=83.01  E-value=14  Score=43.23  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=22.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          462 LGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                      +...|.++.+||||+.||-..++.|.+--
T Consensus       446 ~~g~Issl~wSpDG~RiA~i~~g~v~Va~  474 (591)
T PRK13616        446 VPGPISELQLSRDGVRAAMIIGGKVYLAV  474 (591)
T ss_pred             cCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence            45579999999999999985567666643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=82.41  E-value=63  Score=34.13  Aligned_cols=132  Identities=13%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             CcEEEEeCCCCc-EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGK-IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK-~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|+++++...+ ++..-.-+...   .++++...        ++.++.|-.-+.|.++-.+.....+..+.        
T Consensus       107 ~~l~v~~l~~~~~l~~~~~~~~~~---~i~sl~~~--------~~~I~vgD~~~sv~~~~~~~~~~~l~~va--------  167 (321)
T PF03178_consen  107 NKLYVYDLDNSKTLLKKAFYDSPF---YITSLSVF--------KNYILVGDAMKSVSLLRYDEENNKLILVA--------  167 (321)
T ss_dssp             TEEEEEEEETTSSEEEEEEE-BSS---SEEEEEEE--------TTEEEEEESSSSEEEEEEETTTE-EEEEE--------
T ss_pred             CEEEEEEccCcccchhhheecceE---EEEEEecc--------ccEEEEEEcccCEEEEEEEccCCEEEEEE--------
Confidence            479999999888 65543333322   34455554        46899998888888774333222122222        


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc------c--ccc--ccccCCCCCeEEE---EECC--CC
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM------R--QAK--TAFPGLGSPITHV---DVTY--DG  475 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~------r--~ak--t~L~GH~d~ItsV---dfSp--DG  475 (634)
                          .++. ...++++++-.++ .++++..+|.|.++.....      +  ...  ..+ -+++.|+++   ++.|  .+
T Consensus       168 ----~d~~-~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~  241 (321)
T PF03178_consen  168 ----RDYQ-PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGS  241 (321)
T ss_dssp             ----EESS--BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSS
T ss_pred             ----ecCC-CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCC
Confidence                1111 2234566665344 8999999999999986520      0  011  111 367889998   7777  23


Q ss_pred             C------EEE-EEcCCcEEEE
Q 047036          476 K------WIL-GTTDTYLILI  489 (634)
Q Consensus       476 k------~Ll-SS~D~tIrLW  489 (634)
                      .      .|+ +|.+|.|-..
T Consensus       242 ~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  242 SESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S-TTEEEEEEEEETTS-EEEE
T ss_pred             CcccccceEEEEecCCEEEEE
Confidence            3      244 4889998744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=82.22  E-value=12  Score=33.85  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=60.2

Q ss_pred             eeEEEEecCCCCCceEEee-ccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecc---e--eeeeeccccCc
Q 047036           74 VKLYLHIGGNTPKAKWVIS-DKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGS---K--VRAKVSTEMQL  147 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~---~--~~~~v~~~~~~  147 (634)
                      +.||.+   .....+|+.+ .-.....|++-                 .  ..-.|||....-   +  +.+.|.++|.+
T Consensus         9 a~v~~~---~~~~~~W~~~~~~~g~v~~~~d-----------------~--~~~~y~i~~~~~~~~~vv~~~~l~~~~~y   66 (104)
T cd00837           9 AQVYTA---DPSTGKWVPASGGTGAVSLVKD-----------------S--TRNTYRIRGVDIQDQKVIWNQEIYKGLKY   66 (104)
T ss_pred             EEEEEE---CCCCCceEECCCCeEEEEEEEE-----------------C--CCCEEEEEEEecCCCeEEEEEEecCCcEE
Confidence            667766   2226799998 56677888882                 1  122478777432   2  78889887766


Q ss_pred             ccccccceEEEE-e---CcEEEEEcCChHHHHHHHHHHHHhH
Q 047036          148 KMFGDQRRIDFV-D---KGVWALKFFSDSEYRKFVTEFQDRL  185 (634)
Q Consensus       148 ~~~~~~~~~~f~-~---~~~w~lkF~~~~~~~~F~~~~~~~l  185 (634)
                      .    +.+-.|. |   ++.+-|.|.+.++-.+|..+.++|+
T Consensus        67 ~----~~~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~v~~~~  104 (104)
T cd00837          67 T----QATPFFHQWEDDNCVYGLNFASEEEAAQFRKKVLEAI  104 (104)
T ss_pred             e----ecCCeEEEEEcCCcEEEEeeCCHHHHHHHHHHHHhcC
Confidence            4    3333333 3   3599999999999999999998874

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	634
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 69/583 (11%), Positives = 166/583 (28%), Gaps = 188/583 (32%)

Query: 79  HIGGNTPKAKWVISDKLTSY--SFVRTNKINGGNDSD-DDEEESEKGVLGDGFWVLKVGS 135
           H+   T + ++   D L+ +  +FV         + D  D ++  K +L           
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVD--------NFDCKDVQDMPKSILS---------- 47

Query: 136 KVRAKVSTEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKAT 195
                   E+   +   +  +    +  W L    +   +KFV E     ++ +     T
Sbjct: 48  ------KEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 196 EENKMKVYGKEFIGWVKPEVADDSMWEDADDGLDKTPESVTPVRGNRDLLEEFEELANGG 255
           E+ +  +  + +I         D ++ D         +       +R  L+ + +L    
Sbjct: 101 EQRQPSMMTRMYIEQR------DRLYND--------NQVFAKYNVSR--LQPYLKLRQ-A 143

Query: 256 VQSLTLGALDNSFLV---------SDLGLQVYRNYNRGIHNKGVSVRFDGGSS--KIGSN 304
           +  L         ++         + + L V  +Y        V  + D       + + 
Sbjct: 144 LLELR----PAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKMDFKIFWLNLKNC 192

Query: 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK-----IVTEWKFEK------ 353
           ++P+  L M  +    +          +  + +L I + +     ++    +E       
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 354 --------DGTD------ITMRD--ITNDTKSSQ------------LDPSES-----TFL 380
                   +  +      +T R   +T+   ++             L P E       +L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 381 GLDDNRL----CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIV 436
                 L       + R  S I +++  G   +  W       +  N     +  + S+ 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDG---LATW----DNWKHVNCDKLTTIIESSLN 364

Query: 437 VGSLDGKI--RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFS 494
           V  L+     +++ + S+      FP          +                L+  ++ 
Sbjct: 365 V--LEPAEYRKMFDRLSV------FP------PSAHIPTI-------------LLSLIWF 397

Query: 495 DKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSW-VTENGKQERH-- 551
           D            + NK+    L++  P +S ++     I   +    V    +   H  
Sbjct: 398 DVIKSD----VMVVVNKLHKYSLVEKQPKESTIS-----IPSIYLELKVKLENEYALHRS 448

Query: 552 LVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKD 594
           +V                    + Y     +   +    ++  
Sbjct: 449 IV--------------------DHYN----IPKTFDSDDLIPP 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	634
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.85
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.85
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.85
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.84
3jro_A	753	Fusion protein of protein transport protein SEC13	99.84
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.83
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.77
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.76
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.68
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.65
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.63
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.62
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.62
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.6
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.59
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.56
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.56
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.55
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.52
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.52
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.51
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.51
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.51
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.49
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.48
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.47
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.45
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.45
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.45
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.43
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.42
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.41
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.41
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.38
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.37
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.37
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.36
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.32
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.29
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.28
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.22
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.18
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.06
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.06
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.03
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.0
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.98
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.95
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.93
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.93
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.85
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.84
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.76
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.58
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.36
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.36
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.98
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.91
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.82
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.82
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.78
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.78
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.71
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.66
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.61
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.33
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.22
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.06
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.0
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.95
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.87
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.8
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.77
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.52
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.41
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.37
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.15
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.04
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.0
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.84
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.41
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.28
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.12
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.68
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.62
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.44
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.96
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.87
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	93.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	93.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.17
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.48
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.23
3v65_B	386	Low-density lipoprotein receptor-related protein;	92.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	91.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	91.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	90.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.39
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	88.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	87.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	87.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	86.33
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	85.62
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	84.11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	83.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	81.92
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	80.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	80.15

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=3.9e-29  Score=251.89  Aligned_cols=256  Identities=13%  Similarity=0.127  Sum_probs=191.2

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ..+.++.+ +|+.+++.|   .+|.||......     ....+..|.       .|...+.+.+++++|++++.|     
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~-------~~v~~~~~~~~~~~l~s~s~d-----   76 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----EVRSIQVTE-------TPVRAGKFIARKNWIIVGSDD-----   76 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCS-------SCEEEEEEEGGGTEEEEEETT-----
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----eeEEeeccC-------CcEEEEEEeCCCCEEEEECCC-----
Confidence            35788888 899888875   589999865532     223344441       234445555666778888775     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+.+|+++.++.+|.+.|  ..++|+|+        +.++++|+.|++|++||++.+..+.+.+.+|...   
T Consensus        77 -~~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~---  142 (304)
T 2ynn_A           77 -FRIRVFNYNTGEKVVDFEAHPDYI--RSIAVHPT--------KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF---  142 (304)
T ss_dssp             -SEEEEEETTTCCEEEEEECCSSCE--EEEEECSS--------SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC---
T ss_pred             -CEEEEEECCCCcEEEEEeCCCCcE--EEEEEcCC--------CCEEEEECCCCeEEEEECCCCcchhhhhcccCCc---
Confidence             799999999999999999999986  46699998        6799999999999999999875656677666543   


Q ss_pred             cccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC--CCCEEEE-EcCCcE
Q 047036          412 WTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY--DGKWILG-TTDTYL  486 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp--DGk~LlS-S~D~tI  486 (634)
                                  +.|++++| ++ .||+||.||+|||||+.+.........+|...|..++|+|  +|++|++ +.|++|
T Consensus       143 ------------v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i  210 (304)
T 2ynn_A          143 ------------VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI  210 (304)
T ss_dssp             ------------EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEE
T ss_pred             ------------EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeE
Confidence                        57899998 55 7999999999999998765322334457778999999987  8899999 999999


Q ss_pred             EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      +|||+.    .++++..|.+|....                  ..+.|+|.        +  ...+.++.|+.|.+||+.
T Consensus       211 ~iWd~~----~~~~~~~~~~h~~~v------------------~~~~~~p~--------~--~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          211 KIWDYQ----TKSCVATLEGHMSNV------------------SFAVFHPT--------L--PIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             EEEETT----TTEEEEEEECCSSCE------------------EEEEECSS--------S--SEEEEEETTSCEEEEETT
T ss_pred             EEEeCC----CCccceeeCCCCCCE------------------EEEEECCC--------C--CEEEEEcCCCeEEEEECC
Confidence            999986    688888888887421                  12344443        2  234444789999999987


Q ss_pred             hhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          567 QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       567 ~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      .   ++..             ..+..+.+.|..+.|
T Consensus       259 ~---~~~~-------------~~~~~~~~~~~~~~~  278 (304)
T 2ynn_A          259 T---YKVE-------------KTLNVGLERSWCIAT  278 (304)
T ss_dssp             T---CCEE-------------EEECCSSSSEEEEEE
T ss_pred             C---Ccee-------------eeccCCCccEEEEEE
Confidence            3   2221             356666777776666

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=1.8e-28  Score=258.49  Aligned_cols=254  Identities=12%  Similarity=0.158  Sum_probs=196.9

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ..+.++.+ +++.+++.|   .+|.||....+.     ....+.+|.       .+...+.+++++++|++++.|     
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----~~~~l~~h~-------~~V~~v~~~~~~~~l~sgs~D-----  171 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----FERTLKGHT-------DSVQDISFDHSGKLLASCSAD-----  171 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----CCEEECCCS-------SCEEEEEECTTSSEEEEEETT-----
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeccC-------CcEEEEEEcCCCCEEEEEeCC-----
Confidence            34778888 888888876   589999875543     233556662       123333444455677788775     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+.++++++++.+|...|  ..++|+|+        +..+++|+.|++|++||++++.+ +.++.+|...   
T Consensus       172 -~~i~iwd~~~~~~~~~~~~h~~~V--~~v~~~p~--------~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~---  236 (410)
T 1vyh_C          172 -MTIKLWDFQGFECIRTMHGHDHNV--SSVSIMPN--------GDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREW---  236 (410)
T ss_dssp             -SCCCEEETTSSCEEECCCCCSSCE--EEEEECSS--------SSEEEEEETTSEEEEEETTTCCE-EEEEECCSSC---
T ss_pred             -CeEEEEeCCCCceeEEEcCCCCCE--EEEEEeCC--------CCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCcc---
Confidence             799999999999999999999986  46699998        67999999999999999998764 6777766543   


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCC----------------
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD----------------  474 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD----------------  474 (634)
                                  +.+++++++| +||+||.||+|||||+.+. .++..|.+|..+|.+|+|+|+                
T Consensus       237 ------------v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  303 (410)
T 1vyh_C          237 ------------VRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKK  303 (410)
T ss_dssp             ------------EEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             ------------EEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccc
Confidence                        4688899999 7999999999999999886 477889999999999999997                


Q ss_pred             ----CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCc
Q 047036          475 ----GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQE  549 (634)
Q Consensus       475 ----Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E  549 (634)
                          |.+|++ +.|++|+|||+.    +|+++..|.+|.+..                  ..+.|+|.        |  .
T Consensus       304 ~~~~g~~l~sgs~D~~i~iwd~~----~~~~~~~~~~h~~~v------------------~~v~~~~~--------g--~  351 (410)
T 1vyh_C          304 SGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTLVGHDNWV------------------RGVLFHSG--------G--K  351 (410)
T ss_dssp             ----CCEEEEEETTSEEEEEETT----TTEEEEEEECCSSCE------------------EEEEECSS--------S--S
T ss_pred             cCCCCCEEEEEeCCCeEEEEECC----CCceEEEEECCCCcE------------------EEEEEcCC--------C--C
Confidence                779999 999999999986    688888888876411                  12444443        3  2


Q ss_pred             eEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          550 RHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       550 ~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      ..++++.|+.|.+||+..   ++.             ...+..|...|.++.|
T Consensus       352 ~l~s~s~D~~i~vwd~~~---~~~-------------~~~~~~h~~~v~~l~~  388 (410)
T 1vyh_C          352 FILSCADDKTLRVWDYKN---KRC-------------MKTLNAHEHFVTSLDF  388 (410)
T ss_dssp             CEEEEETTTEEEEECCTT---SCC-------------CEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCC---Cce-------------EEEEcCCCCcEEEEEE
Confidence            345557899999999863   222             1467889999998888

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=248.57  Aligned_cols=238  Identities=10%  Similarity=0.019  Sum_probs=171.8

Q ss_pred             EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      +.++++ +|+.+++.+  ..|.||....+.... .....+.+|. .+.+++|+|        ++++|++++.|      +
T Consensus        85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~-~~~~~~~~H~~~V~~v~~sp--------dg~~l~sgs~d------~  149 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSGAVELWELDENETLI-VSKFCKYEHDDIVSTVSVLS--------SGTQAVSGSKD------I  149 (344)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEEECTTSSCE-EEEEEEECCSSCEEEEEECT--------TSSEEEEEETT------S
T ss_pred             EEEEEEeCCCeEEEEECCCEEEEEeccCCCcee-EeeccccCCCCCEEEEEECC--------CCCEEEEEeCC------C
Confidence            677777 787777654  589999876544211 1122334552 234455555        55667777765      7


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      +|++||+++|+++++|.+|.+.|  ..++|+|++       ..++++|+.|++|++||+++++. +..+..+.       
T Consensus       150 ~i~iwd~~~~~~~~~~~~h~~~V--~~~~~~~~~-------~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~-------  212 (344)
T 4gqb_B          150 CIKVWDLAQQVVLSSYRAHAAQV--TCVAASPHK-------DSVFLSCSEDNRILLWDTRCPKP-ASQIGCSA-------  212 (344)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCE--EEEEECSSC-------TTEEEEEETTSCEEEEETTSSSC-EEECC----------
T ss_pred             eEEEEECCCCcEEEEEcCcCCce--EEEEecCCC-------CCceeeeccccccccccccccce-eeeeecce-------
Confidence            99999999999999999999986  456999983       25789999999999999998764 44543111       


Q ss_pred             cccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-EcCCcEEEE
Q 047036          414 QGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-TTDTYLILI  489 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D~tIrLW  489 (634)
                            ....+.+++++|++  +||+|+.||+|||||+.+++ +...|.+|..+|++|+||||| ++||+ +.|++|+||
T Consensus       213 ------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          213 ------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL  285 (344)
T ss_dssp             -------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             ------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence                  22346788998854  68999999999999998874 778899999999999999999 57888 899999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      |+.    .+++ ..+.+|.+..                  ..+.|+|.        |  ...|++ |.|+.|++|++..
T Consensus       286 d~~----~~~~-~~~~~H~~~V------------------~~v~~sp~--------~--~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          286 DSS----LSEL-FRSQAHRDFV------------------RDATWSPL--------N--HSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             CTT----CCEE-EEECCCSSCE------------------EEEEECSS--------S--TTEEEEEETTSCEEEEECCC
T ss_pred             ECC----CCcE-EEEcCCCCCE------------------EEEEEeCC--------C--CeEEEEEcCCCeEEEEECCC
Confidence            975    4443 3466665311                  23555554        2  245655 6799999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=4.1e-28  Score=252.23  Aligned_cols=228  Identities=11%  Similarity=0.083  Sum_probs=165.2

Q ss_pred             eeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE----EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          309 KALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE----WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       309 ~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~----lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      ..+.+.+++ .|++++.|      ++|++||+++|+.+..    +.+|.+.|  ..++|+|+        +.+|++|+.|
T Consensus        86 ~~~~~s~d~-~l~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V--~~v~~spd--------g~~l~sgs~d  148 (344)
T 4gqb_B           86 ADLTWVGER-GILVASDS------GAVELWELDENETLIVSKFCKYEHDDIV--STVSVLSS--------GTQAVSGSKD  148 (344)
T ss_dssp             EEEEEETTT-EEEEEETT------SEEEEEEECTTSSCEEEEEEEECCSSCE--EEEEECTT--------SSEEEEEETT
T ss_pred             EEEEEeCCC-eEEEEECC------CEEEEEeccCCCceeEeeccccCCCCCE--EEEEECCC--------CCEEEEEeCC
Confidence            344445553 35556554      7999999999986554    45899986  46699998        6899999999


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccc--c
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAF--P  460 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L--~  460 (634)
                      ++|++||++++. +++++.+|...               +.++++++++  .||+||.||+|||||+.+++ ....+  .
T Consensus       149 ~~i~iwd~~~~~-~~~~~~~h~~~---------------V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~  211 (344)
T 4gqb_B          149 ICIKVWDLAQQV-VLSSYRAHAAQ---------------VTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCS  211 (344)
T ss_dssp             SCEEEEETTTTE-EEEEECCCSSC---------------EEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC--
T ss_pred             CeEEEEECCCCc-EEEEEcCcCCc---------------eEEEEecCCCCCceeeeccccccccccccccc-eeeeeecc
Confidence            999999999864 56788777654               5788999887  58999999999999998764 44444  4


Q ss_pred             CCCCCeEEEEECCC-CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccc
Q 047036          461 GLGSPITHVDVTYD-GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGH  538 (634)
Q Consensus       461 GH~d~ItsVdfSpD-Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~  538 (634)
                      .|+..|++|+|+|+ +++|++ +.|++|+|||++    .++++..|.+|....                  ..+.|+|. 
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~~~v------------------~~v~fsp~-  268 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCV------------------TGLVFSPH-  268 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCSSCE------------------EEEEECSS-
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCCCCE------------------EEEEEccC-
Confidence            67788999999995 567777 889999999986    688888888886411                  12455544 


Q ss_pred             ccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCc-c-ccCCCCCC
Q 047036          539 FSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDK-F-AVTDSPEA  615 (634)
Q Consensus       539 Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~-f-~~~~~~~~  615 (634)
                             |  .++|++ |.|+.|+|||+..   ++              ++++..|.+.|.++.|-.++ + ..+++.|.
T Consensus       269 -------g--~~~lasgs~D~~i~vwd~~~---~~--------------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          269 -------S--VPFLASLSEDCSLAVLDSSL---SE--------------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             -------S--SCCEEEEETTSCEEEECTTC---CE--------------EEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             -------C--CeEEEEEeCCCeEEEEECCC---Cc--------------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence                   2  245654 7899999999762   22              34678899999999993332 2 22444466


Q ss_pred             CEEE
Q 047036          616 PLVV  619 (634)
Q Consensus       616 ~iiv  619 (634)
                      .|++
T Consensus       323 ~v~~  326 (344)
T 4gqb_B          323 QVVH  326 (344)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            6665

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=3e-27  Score=241.65  Aligned_cols=255  Identities=12%  Similarity=0.179  Sum_probs=186.1

Q ss_pred             cEEEeee-C----CCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036          257 QSLTLGA-L----DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       257 ~~LavG~-~----D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      .+.++++ +    ++.+++.|   .+|.||......+.   ....+.+|.       .+...+.++.+..++++++.|  
T Consensus        34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---~~~~l~gh~-------~~v~~~~~~~~~~~l~s~s~D--  101 (321)
T 3ow8_A           34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---LQWSLEGHQ-------LGVVSVDISHTLPIAASSSLD--  101 (321)
T ss_dssp             CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---EEEEECCCS-------SCEEEEEECSSSSEEEEEETT--
T ss_pred             cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---eeeeeccCC-------CCEEEEEECCCCCEEEEEeCC--
Confidence            3555555 3    34566654   57888886543211   122455652       122233344455667777765  


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          329 KPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       329 ~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                          ++|++||+++|+++..+.+|...|  ..++|+|+        ++.+++|+.|++|++||++.+.. +..+..|.  
T Consensus       102 ----~~i~lWd~~~~~~~~~~~~~~~~~--~~~~~spd--------g~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~--  164 (321)
T 3ow8_A          102 ----AHIRLWDLENGKQIKSIDAGPVDA--WTLAFSPD--------SQYLATGTHVGKVNIFGVESGKK-EYSLDTRG--  164 (321)
T ss_dssp             ----SEEEEEETTTTEEEEEEECCTTCC--CCEEECTT--------SSEEEEECTTSEEEEEETTTCSE-EEEEECSS--
T ss_pred             ----CcEEEEECCCCCEEEEEeCCCccE--EEEEECCC--------CCEEEEEcCCCcEEEEEcCCCce-eEEecCCC--
Confidence                799999999999999999998876  45699998        67999999999999999998754 34554332  


Q ss_pred             ccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYL  486 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tI  486 (634)
                                   ..+.+++++|+| +||+|+.||+|+|||+.+++ ....|.+|..+|++|+|+|||++|++ +.|++|
T Consensus       165 -------------~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i  230 (321)
T 3ow8_A          165 -------------KFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI  230 (321)
T ss_dssp             -------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred             -------------ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence                         236789999999 79999999999999998864 77789999999999999999999999 889999


Q ss_pred             EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      +|||+.    .++.+..|.+|.+..                  ..+.|+|.        |  ...++++.|+.|.+||+.
T Consensus       231 ~iwd~~----~~~~~~~~~~h~~~v------------------~~~~~sp~--------~--~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          231 KIYDVQ----HANLAGTLSGHASWV------------------LNVAFCPD--------D--THFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             EEEETT----TCCEEEEECCCSSCE------------------EEEEECTT--------S--SEEEEEETTSCEEEEETT
T ss_pred             EEEECC----CcceeEEEcCCCCce------------------EEEEECCC--------C--CEEEEEeCCCcEEEEeCC
Confidence            999986    567777777775311                  12445544        3  234455789999999986


Q ss_pred             hhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          567 QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       567 ~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      .   ++.             ...+..+.+.|..+.|
T Consensus       279 ~---~~~-------------~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          279 T---RTC-------------VHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             T---TEE-------------EEEECCCSSCEEEEEE
T ss_pred             C---CEE-------------EEEEcCCCCcEEEEEE
Confidence            3   221             2467788889998888

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2.4e-26  Score=229.56  Aligned_cols=257  Identities=18%  Similarity=0.266  Sum_probs=189.9

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ....++.+ +|+.+++.|   ..|.||......     ....+.+|.       .+...+.+++++++|++++.|     
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~-------~~v~~~~~~~~~~~l~s~~~d-----   86 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHK-------LGISDVAWSSDSNLLVSASDD-----   86 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCS-------SCEEEEEECTTSSEEEEEETT-----
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----cchhhccCC-------CceEEEEEcCCCCEEEEECCC-----
Confidence            34777888 888888765   578899865543     233455552       123334445556777777765     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+.+++++..+.+|...|  ..++|+|+        +.++++|+.|++|++||++++.+ +..+.+|..    
T Consensus        87 -~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~----  150 (312)
T 4ery_A           87 -KTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQ--------SNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSD----  150 (312)
T ss_dssp             -SEEEEEETTTCCEEEEEECCSSCE--EEEEECSS--------SSEEEEEETTSCEEEEETTTCCE-EEEECCCSS----
T ss_pred             -CEEEEEECCCCcEEEEEcCCCCCE--EEEEEcCC--------CCEEEEEeCCCcEEEEECCCCEE-EEEecCCCC----
Confidence             799999999999999999999976  45699998        67999999999999999998654 566655443    


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                                 .+++++++++| +||+|+.||.|+|||+.+++........|..+|..++|+|+|++|++ +.|+.|+||
T Consensus       151 -----------~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          151 -----------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  219 (312)
T ss_dssp             -----------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             -----------cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence                       46789999998 79999999999999998764333445578889999999999999999 899999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQV  568 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v  568 (634)
                      |+.    +++++..|.+|....                     ......|+. .    ...+|++ +.|+.|.+||+.. 
T Consensus       220 d~~----~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~----~~~~l~sg~~dg~i~vwd~~~-  268 (312)
T 4ery_A          220 DYS----KGKCLKTYTGHKNEK---------------------YCIFANFSV-T----GGKWIVSGSEDNLVYIWNLQT-  268 (312)
T ss_dssp             ETT----TTEEEEEECSSCCSS---------------------SCCCEEEEC-S----SSCEEEECCTTSCEEEEETTT-
T ss_pred             ECC----CCcEEEEEEecCCce---------------------EEEEEEEEe-C----CCcEEEEECCCCEEEEEECCC-
Confidence            986    677777777775421                     001112221 1    1245555 6799999999863 


Q ss_pred             hcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          569 KNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       569 ~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                        ++.             ...+..+.+.|..+.|
T Consensus       269 --~~~-------------~~~~~~h~~~v~~~~~  287 (312)
T 4ery_A          269 --KEI-------------VQKLQGHTDVVISTAC  287 (312)
T ss_dssp             --CCE-------------EEEECCCSSCEEEEEE
T ss_pred             --chh-------------hhhhhccCCcEEEEee
Confidence              222             2467788888888887

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=6e-27  Score=237.91  Aligned_cols=206  Identities=15%  Similarity=0.195  Sum_probs=154.4

Q ss_pred             cEEEeee-CC-CeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LD-NSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D-~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+.++++ ++ ..+++.|   .+|.+|...............|.+|.       .+...+.+++++++|++++.|     
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~s~dg~~l~s~s~D-----   86 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-------HIVQDCTLTADGAYALSASWD-----   86 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-------SCEEEEEECTTSSEEEEEETT-----
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc-------ccEEEEEECCCCCEEEEEeCC-----
Confidence            3566666 43 3566654   57888876432212112234566663       223334445556777888775     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+++|++++++.+|...|  ..++|+|+        +.++++|+.|++|++||++..  .+..+.+|...   
T Consensus        87 -~~v~~wd~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~---  150 (319)
T 3frx_A           87 -KTLRLWDVATGETYQRFVGHKSDV--MSVDIDKK--------ASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDW---  150 (319)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSCE--EEEEECTT--------SCEEEEEETTSCEEEEETTSC--EEEEECCCSSC---
T ss_pred             -CEEEEEECCCCCeeEEEccCCCcE--EEEEEcCC--------CCEEEEEeCCCeEEEEECCCC--eEEEEeccCCc---
Confidence             799999999999999999999986  45699998        679999999999999999742  45677666544   


Q ss_pred             cccccccccCcceEEEEECC------CC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC
Q 047036          412 WTQGHQFSRGTNFQCFASTG------DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD  483 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~------dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D  483 (634)
                                  +.++++.|      ++ .|++|+.|++||+||+.+.+ ....+.+|..+|++|+|+|||++|++ +.|
T Consensus       151 ------------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d  217 (319)
T 3frx_A          151 ------------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKD  217 (319)
T ss_dssp             ------------EEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ------------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence                        45666766      34 69999999999999998763 66788999999999999999999999 899


Q ss_pred             CcEEEEEcccccCCCCeeeeecCC
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                      ++|+|||+.    .++++..+..+
T Consensus       218 g~i~iwd~~----~~~~~~~~~~~  237 (319)
T 3frx_A          218 GEIMLWNLA----AKKAMYTLSAQ  237 (319)
T ss_dssp             CEEEEEETT----TTEEEEEEECC
T ss_pred             CeEEEEECC----CCcEEEEecCC
Confidence            999999986    56777777654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=4.6e-27  Score=236.74  Aligned_cols=217  Identities=13%  Similarity=0.090  Sum_probs=161.4

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      .+.+|+|++        .+|++++.|      ++|++||+++|+.++.+.+|...|  ..++|+|+        +++|++
T Consensus        17 ~~~~fsp~~--------~~l~s~~~d------g~v~lWd~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~s   72 (304)
T 2ynn_A           17 KGIDFHPTE--------PWVLTTLYS------GRVELWNYETQVEVRSIQVTETPV--RAGKFIAR--------KNWIIV   72 (304)
T ss_dssp             EEEEECSSS--------SEEEEEETT------SEEEEEETTTTEEEEEEECCSSCE--EEEEEEGG--------GTEEEE
T ss_pred             EEEEECCCC--------CEEEEEcCC------CcEEEEECCCCceeEEeeccCCcE--EEEEEeCC--------CCEEEE
Confidence            455566654        566777765      799999999999999999999876  46699998        679999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      |+.|++|++||++++.+ +..+.+|...               +.+++++|++ +||+||.||+|||||+.+.......+
T Consensus        73 ~s~d~~i~vwd~~~~~~-~~~~~~h~~~---------------v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           73 GSDDFRIRVFNYNTGEK-VVDFEAHPDY---------------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             EETTSEEEEEETTTCCE-EEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             ECCCCEEEEEECCCCcE-EEEEeCCCCc---------------EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            99999999999998764 5677766543               5789999998 89999999999999987754455678


Q ss_pred             cCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          460 PGLGSPITHVDVTY-DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       460 ~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      .+|..+|++|+|+| ++.+|++ +.|++|+|||+.    .+.....+..+                +... ...+.|.|.
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~----------------~~~~-v~~~~~~~~  195 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTG----------------QERG-VNYVDYYPL  195 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECC----------------CTTC-EEEEEECCS
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccC----------------CcCc-EEEEEEEEc
Confidence            99999999999999 7899999 999999999975    23222222211                1000 011233322


Q ss_pred             cccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          538 HFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                              ......++++.|+.|.+||+..   ++.             ...+..|...|..+.|
T Consensus       196 --------~~~~~l~s~s~D~~i~iWd~~~---~~~-------------~~~~~~h~~~v~~~~~  236 (304)
T 2ynn_A          196 --------PDKPYMITASDDLTIKIWDYQT---KSC-------------VATLEGHMSNVSFAVF  236 (304)
T ss_dssp             --------TTCCEEEEEETTSEEEEEETTT---TEE-------------EEEEECCSSCEEEEEE
T ss_pred             --------CCCCEEEEEcCCCeEEEEeCCC---Ccc-------------ceeeCCCCCCEEEEEE
Confidence                    1112344557899999999873   221             2567788888888887

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=1.6e-26  Score=238.96  Aligned_cols=190  Identities=16%  Similarity=0.241  Sum_probs=147.7

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      .+..+...|++++.|      ++|++||+++|+++.+|.+|...|  ..++|+|+..      +..+++|+.|++|++||
T Consensus       161 ~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~------g~~l~sgs~Dg~v~~wd  226 (354)
T 2pbi_B          161 SFTNSDMQILTASGD------GTCALWDVESGQLLQSFHGHGADV--LCLDLAPSET------GNTFVSGGCDKKAMVWD  226 (354)
T ss_dssp             EECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCSSCE--EEEEECCCSS------CCEEEEEETTSCEEEEE
T ss_pred             EEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEEEcCCCCCe--EEEEEEeCCC------CCEEEEEeCCCeEEEEE
Confidence            344556677777765      799999999999999999999876  4568888521      57999999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITH  468 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~Its  468 (634)
                      ++++.+ ++.+.+|..               .+.+++++|+| +||+||.||+|||||+.+.+ ....+.  .+...|++
T Consensus       227 ~~~~~~-~~~~~~h~~---------------~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          227 MRSGQC-VQAFETHES---------------DVNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAIYSKESIIFGASS  289 (354)
T ss_dssp             TTTCCE-EEEECCCSS---------------CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTCCSCEEE
T ss_pred             CCCCcE-EEEecCCCC---------------CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCcccceeE
Confidence            998764 577765544               36789999998 89999999999999987653 333343  34468999


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCC
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGK  547 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~  547 (634)
                      ++|+|+|++|++ +.|++|+|||+.    +|+.+..+.+|.+..                  ..+.|+|.        | 
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~----~~~~~~~l~~h~~~v------------------~~l~~spd--------g-  338 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVL----KGSRVSILFGHENRV------------------STLRVSPD--------G-  338 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCE------------------EEEEECTT--------S-
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECC----CCceEEEEECCCCcE------------------EEEEECCC--------C-
Confidence            999999999999 889999999985    677777777776411                  12455544        3 


Q ss_pred             CceEEEEEcCCeEEEEe
Q 047036          548 QERHLVATVGKFSVIWD  564 (634)
Q Consensus       548 ~E~~IvtStg~~viiWd  564 (634)
                       ...+++|.|+.|.||+
T Consensus       339 -~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 -TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -SCEEEEETTSEEEEEC
T ss_pred             -CEEEEEcCCCCEEecC
Confidence             2344557899999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=1.4e-26  Score=241.82  Aligned_cols=263  Identities=16%  Similarity=0.202  Sum_probs=180.9

Q ss_pred             CcEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCC--cc---------cccCcceeeEEeCCcceEE
Q 047036          256 VQSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSK--IG---------SNSTPKKALLMRGETNMML  321 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~--~g---------~~fsP~~~mL~~~D~~mll  321 (634)
                      ..+.++.+ +|+.+++.|  .++.||....+.+     ...+..+...  ..         ..-.+...+.++.++++|+
T Consensus        65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL-----VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCE-----EEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CEEEEEEECCCCCEEEEEcCCcEEEEEecCCCE-----EEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            34667788 899888876  5888998755431     2233322100  00         0000133455666777788


Q ss_pred             ecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe
Q 047036          322 MSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN  401 (634)
Q Consensus       322 sss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~  401 (634)
                      +++.|      ++|++||+++++++..+.+|...|  ..++|+|+        +..|++|+.|++|++||++++.+ +..
T Consensus       140 s~~~d------~~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~p~--------~~~l~s~s~d~~v~iwd~~~~~~-~~~  202 (393)
T 1erj_A          140 TGAED------RLIRIWDIENRKIVMILQGHEQDI--YSLDYFPS--------GDKLVSGSGDRTVRIWDLRTGQC-SLT  202 (393)
T ss_dssp             EEETT------SCEEEEETTTTEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSEEEEEETTTTEE-EEE
T ss_pred             EEcCC------CeEEEEECCCCcEEEEEccCCCCE--EEEEEcCC--------CCEEEEecCCCcEEEEECCCCee-EEE
Confidence            88775      799999999999999999999986  46699998        67999999999999999998654 334


Q ss_pred             cccCCCCccccccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccccccccc-------cCCCCCeEEEEEC
Q 047036          402 MVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAF-------PGLGSPITHVDVT  472 (634)
Q Consensus       402 l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L-------~GH~d~ItsVdfS  472 (634)
                      +.                ....+.+++++| +| +||+|+.||+|||||+.+++ ....+       .+|..+|++|+|+
T Consensus       203 ~~----------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~  265 (393)
T 1erj_A          203 LS----------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFT  265 (393)
T ss_dssp             EE----------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEEC
T ss_pred             EE----------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEEC
Confidence            32                122367888888 77 79999999999999988753 33333       6899999999999


Q ss_pred             CCCCEEEE-EcCCcEEEEEcccccC--------CCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          473 YDGKWILG-TTDTYLILICTLFSDK--------DGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       473 pDGk~LlS-S~D~tIrLWD~~~~~~--------~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      |||++|++ +.|++|+|||+.....        .+.+...|.+|..                 . ...+.|++.      
T Consensus       266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------------~-v~~~~~~~~------  321 (393)
T 1erj_A          266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-----------------F-VLSVATTQN------  321 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS-----------------C-EEEEEECGG------
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-----------------c-EEEEEECCC------
Confidence            99999999 8999999999862110        0122222222221                 0 012333333      


Q ss_pred             cCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          544 ENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       544 ~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                        +   .+|++ +.|+.|++||++.   ++.             ...+..|...|..+.|
T Consensus       322 --~---~~l~sgs~D~~v~iwd~~~---~~~-------------~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          322 --D---EYILSGSKDRGVLFWDKKS---GNP-------------LLMLQGHRNSVISVAV  360 (393)
T ss_dssp             --G---CEEEEEETTSEEEEEETTT---CCE-------------EEEEECCSSCEEEEEE
T ss_pred             --C---CEEEEEeCCCeEEEEECCC---CeE-------------EEEECCCCCCEEEEEe
Confidence              2   35554 7899999999863   322             2467889999998888

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=4.5e-27  Score=247.75  Aligned_cols=233  Identities=12%  Similarity=0.175  Sum_probs=175.2

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      .+.++.+ +++.+++.|   .+|.||......     .+..+.+|.       .+...+.+.+++++|++++.|      
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~-------~~V~~v~~~p~~~~l~s~s~D------  213 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHD-------HNVSSVSIMPNGDHIVSASRD------  213 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----EEECCCCCS-------SCEEEEEECSSSSEEEEEETT------
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCC-------CCEEEEEEeCCCCEEEEEeCC------
Confidence            4667777 777777765   578899864432     233344552       123333444455677787775      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|++||+.+|+++.+|.+|...|  ..++|+|+        +.++++|+.|++|++||++++.+ +..+.+|...    
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~~~~--------g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~----  278 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHREWV--RMVRPNQD--------GTLIASCSNDQTVRVWVVATKEC-KAELREHRHV----  278 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTTCCE-EEEECCCSSC----
T ss_pred             CeEEEEECCCCcEEEEEeCCCccE--EEEEECCC--------CCEEEEEcCCCeEEEEECCCCce-eeEecCCCce----
Confidence            799999999999999999999986  46699998        67999999999999999998754 5667665543    


Q ss_pred             ccccccccCcceEEEEECCC--------------------C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGD--------------------G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~d--------------------G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                                 +.|++++|+                    | +||+||.||+|||||+.+++ +...+.+|..+|++|+|
T Consensus       279 -----------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          279 -----------VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             -----------EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEE
T ss_pred             -----------EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEE
Confidence                       467777764                    4 79999999999999998874 77788999999999999


Q ss_pred             CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036          472 TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER  550 (634)
Q Consensus       472 SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~  550 (634)
                      +|+|++|++ +.|++|+|||+.    .++++..|.+|.+..                  ..+.|+|.        +  ..
T Consensus       347 ~~~g~~l~s~s~D~~i~vwd~~----~~~~~~~~~~h~~~v------------------~~l~~~~~--------~--~~  394 (410)
T 1vyh_C          347 HSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFV------------------TSLDFHKT--------A--PY  394 (410)
T ss_dssp             CSSSSCEEEEETTTEEEEECCT----TSCCCEEEECCSSCE------------------EEEEECSS--------S--SC
T ss_pred             cCCCCEEEEEeCCCeEEEEECC----CCceEEEEcCCCCcE------------------EEEEEcCC--------C--CE
Confidence            999999999 899999999985    577777777775311                  13445544        2  23


Q ss_pred             EEEEEcCCeEEEEeCh
Q 047036          551 HLVATVGKFSVIWDFQ  566 (634)
Q Consensus       551 ~IvtStg~~viiWdl~  566 (634)
                      .+++|.|+.|.+|++.
T Consensus       395 l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          395 VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTSEEEEEC--
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            4455789999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=9.3e-27  Score=237.95  Aligned_cols=231  Identities=13%  Similarity=0.126  Sum_probs=176.4

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+.++.+ +++.+++.|   ..|.+|....+.     ....+..+. .....+|        ++++++|++++.+     
T Consensus        82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~~~~~~~~--------spdg~~l~~g~~d-----  143 (321)
T 3ow8_A           82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAF--------SPDSQYLATGTHV-----  143 (321)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCTTCCCCEEE--------CTTSSEEEEECTT-----
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCccEEEEEE--------CCCCCEEEEEcCC-----
Confidence            3566666 677777764   578888865432     222333331 1233444        4455667777665     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+++|+.+..+.+|...|  ..++|+|+        +.+|++|+.|++|++||+++++ +++.+.+|..+   
T Consensus       144 -g~v~i~~~~~~~~~~~~~~~~~~v--~~~~~spd--------g~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~---  208 (321)
T 3ow8_A          144 -GKVNIFGVESGKKEYSLDTRGKFI--LSIAYSPD--------GKYLASGAIDGIINIFDIATGK-LLHTLEGHAMP---  208 (321)
T ss_dssp             -SEEEEEETTTCSEEEEEECSSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTTTE-EEEEECCCSSC---
T ss_pred             -CcEEEEEcCCCceeEEecCCCceE--EEEEECCC--------CCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCc---
Confidence             799999999999999999998875  45699998        6799999999999999999864 46777766543   


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                                  +.+++++|+| +||+||.||+|||||+.+++ ....+.+|..+|++|+|+|||++|++ +.|++|+||
T Consensus       209 ------------v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw  275 (321)
T 3ow8_A          209 ------------IRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW  275 (321)
T ss_dssp             ------------CCEEEECTTSCEEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ------------eeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence                        4688999998 79999999999999998763 67789999999999999999999999 999999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeC
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF  565 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl  565 (634)
                      |+.    +++++..|.+|.+..                  ..+.|+|.        |  ...++++.|+.|.+||+
T Consensus       276 d~~----~~~~~~~~~~h~~~v------------------~~v~~s~~--------g--~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          276 DVG----TRTCVHTFFDHQDQV------------------WGVKYNGN--------G--SKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ETT----TTEEEEEECCCSSCE------------------EEEEECTT--------S--SEEEEEETTCCEEEEEC
T ss_pred             eCC----CCEEEEEEcCCCCcE------------------EEEEECCC--------C--CEEEEEeCCCeEEEEeC
Confidence            986    688888888776411                  12445443        3  23445578999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=6.1e-26  Score=232.07  Aligned_cols=257  Identities=13%  Similarity=0.106  Sum_probs=185.9

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ..+.++.+ +|+.+++.|   .+|.||......     ....+..|. .+..++|+        +++++|++++.|    
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s--------~~~~~l~s~~~d----  118 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYA--------PSGNYVACGGLD----  118 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEEC--------TTSSEEEEEETT----
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEEC--------CCCCEEEEEeCC----
Confidence            45778888 788888865   588999865433     223343331 12334444        455677777765    


Q ss_pred             CCCcEEEEeCCCC----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          331 QAPGVQQLDIETG----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       331 ~~~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                        ++|++||+.++    ++.+.+.+|...|  ..+.|+|+         ..+++|+.|++|++||++++. .+..+.+|.
T Consensus       119 --~~v~iw~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~---------~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~  184 (340)
T 1got_B          119 --NICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDD---------NQIVTSSGDTTCALWDIETGQ-QTTTFTGHT  184 (340)
T ss_dssp             --CEEEEEETTTCSBSCEEEEEEECCSSCE--EEEEEEET---------TEEEEEETTSCEEEEETTTTE-EEEEECCCS
T ss_pred             --CeEEEEECccCCCcceeEEEecCCCccE--EEEEECCC---------CcEEEEECCCcEEEEECCCCc-EEEEEcCCC
Confidence              79999999876    5778899999976  45689886         469999999999999999865 456776665


Q ss_pred             CCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                      ..               +.+++++|+| +||+|+.||+|||||+.+++ ....+.+|..+|++|+|+|+|++|++ +.|+
T Consensus       185 ~~---------------v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          185 GD---------------VMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             SC---------------EEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             Cc---------------eEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            43               5789999998 79999999999999998763 67789999999999999999999999 9999


Q ss_pred             cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      +|+|||++    .++.+..|..+.               +. .....+.|+|.        |  ...++++.|+.|.+||
T Consensus       249 ~v~iwd~~----~~~~~~~~~~~~---------------~~-~~v~~~~~s~~--------g--~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          249 TCRLFDLR----ADQELMTYSHDN---------------II-CGITSVSFSKS--------G--RLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             CEEEEETT----TTEEEEEECCTT---------------CC-SCEEEEEECTT--------S--SEEEEEETTSEEEEEE
T ss_pred             cEEEEECC----CCcEEEEEccCC---------------cc-cceEEEEECCC--------C--CEEEEECCCCeEEEEE
Confidence            99999986    344444333110               00 00012344443        3  2344557899999999


Q ss_pred             ChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccC
Q 047036          565 FQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHD  605 (634)
Q Consensus       565 l~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d  605 (634)
                      +..   +..             ...+..|...|..+.|-.+
T Consensus       299 ~~~---~~~-------------~~~~~~h~~~v~~~~~s~d  323 (340)
T 1got_B          299 ALK---ADR-------------AGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             TTT---CCE-------------EEEEECCSSCEEEEEECTT
T ss_pred             ccc---CcE-------------eeEeecCCCcEEEEEEcCC
Confidence            863   221             2467889999998888433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=9.3e-27  Score=242.11  Aligned_cols=242  Identities=16%  Similarity=0.174  Sum_probs=172.1

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeC---------------
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRG---------------  315 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~---------------  315 (634)
                      ..+.++.+ +|+.+++.|   .+|.||......     ....+..| .++..++|+|++.+++.+               
T Consensus        67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence            45778888 788888875   478888864432     12234444 234566677665544321               


Q ss_pred             ---------------------------CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-----eccCCCcceeEEEE
Q 047036          316 ---------------------------ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-----KFEKDGTDITMRDI  363 (634)
Q Consensus       316 ---------------------------D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-----kgH~~~V~I~vvsf  363 (634)
                                                 +..+|++++.|      ++|++||+.+|+++..+     .+|...|  ..++|
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v--~~~~~  213 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADV--LSLSI  213 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCE--EEEEE
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCe--EEEEe
Confidence                                       13356666654      79999999999999998     7898876  34577


Q ss_pred             ecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCC
Q 047036          364 TNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG  442 (634)
Q Consensus       364 sPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DG  442 (634)
                      +|..       +.++++|+.|++|++||+|.....++.+.+|...               +.+++++|+| +||+||.||
T Consensus       214 ~~~~-------~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~---------------v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          214 NSLN-------ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD---------------INSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             CSSS-------CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC---------------CCEEEECTTSSEEEEECSSS
T ss_pred             ecCC-------CCEEEEEECCCeEEEEECCCCCcceEEECCcCCC---------------eEEEEEecCCCeEEEEcCCC
Confidence            7631       5799999999999999999655556777776654               4688999998 899999999


Q ss_pred             cEEEEeccccccccccccCC-------CCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee----cCCCCC
Q 047036          443 KIRLYSKTSMRQAKTAFPGL-------GSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF----SGRMGN  510 (634)
Q Consensus       443 tIRLWD~~t~r~akt~L~GH-------~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF----~gh~~~  510 (634)
                      +|||||+.+++ ....+..|       ...|++|+|||+|++|++ +.|++|+|||+.    .++.+..+    .+|.+.
T Consensus       272 ~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~----~~~~~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          272 TCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL----LAEMVLNLGTLQNSHEGR  346 (380)
T ss_dssp             CEEEEETTTTE-EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT----TCCEEEEECCSCSSCCCC
T ss_pred             eEEEEECCCCc-EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC----CCceEEEEecccCCCCCc
Confidence            99999998764 44444333       335999999999999999 889999999975    45554444    223210


Q ss_pred             CCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          511 KIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       511 ~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                                        ...+.|+|.        |   ..|++ |.|+.|.||++.
T Consensus       347 ------------------v~~l~~s~d--------g---~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          347 ------------------ISCLGLSSD--------G---SALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             ------------------CCEEEECSS--------S---SEEEEECTTSCEEEEECC
T ss_pred             ------------------eEEEEECCC--------C---CEEEEeeCCCCEEEEecC
Confidence                              123445444        3   45555 679999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=4.1e-26  Score=252.82  Aligned_cols=216  Identities=10%  Similarity=0.053  Sum_probs=155.3

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEE------------------
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLM------------------  313 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~------------------  313 (634)
                      .+.++++ +|+.+++.|   .+|.||........   ....+.+| .++.+++|+|++..|+                  
T Consensus        61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~  137 (611)
T 1nr0_A           61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG  137 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC
Confidence            4777888 888888876   47888886432210   11233333 2335566666654443                  


Q ss_pred             ------------------eCCcc-eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCC
Q 047036          314 ------------------RGETN-MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDP  374 (634)
Q Consensus       314 ------------------~~D~~-mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~  374 (634)
                                        ++++. +|++++.|      ++|++||+.+++++.++.+|...|  ..++|+|+        
T Consensus       138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D------~~v~lwd~~~~~~~~~l~~H~~~V--~~v~fspd--------  201 (611)
T 1nr0_A          138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDD------NTVAIFEGPPFKFKSTFGEHTKFV--HSVRYNPD--------  201 (611)
T ss_dssp             CBCBCCCCCSSCEEEEEECSSSSCEEEEEETT------SCEEEEETTTBEEEEEECCCSSCE--EEEEECTT--------
T ss_pred             CCcceecCCCCCceEEEECCCCCeEEEEEeCC------CeEEEEECCCCeEeeeeccccCce--EEEEECCC--------
Confidence                              23333 46666654      799999999999999999999987  46699999        


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036          375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR  453 (634)
Q Consensus       375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r  453 (634)
                      +.+|++|+.|++|++||++++.+ +..+....  +  ...+    +...+.+++|+|+| +||+||.|++|||||+.+++
T Consensus       202 g~~las~s~D~~i~lwd~~~g~~-~~~~~~~~--~--~~~~----h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          202 GSLFASTGGDGTIVLYNGVDGTK-TGVFEDDS--L--KNVA----HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCE-EEECBCTT--S--SSCS----SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCEEEEEECCCcEEEEECCCCcE-eeeecccc--c--cccc----cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            67999999999999999988654 45552100  0  0001    22346899999999 79999999999999987643


Q ss_pred             cc------------------------------------------cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          454 QA------------------------------------------KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       454 ~a------------------------------------------kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                      ..                                          ...+.||..+|++|+|||||++|++ +.|++|+|||
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            11                                          1235689999999999999999999 9999999999


Q ss_pred             cccccCCCCeeeee
Q 047036          491 TLFSDKDGKTKTGF  504 (634)
Q Consensus       491 ~~~~~~~G~~~~gF  504 (634)
                      +.    .|++...+
T Consensus       353 ~~----~~~~~~~~  362 (611)
T 1nr0_A          353 IS----TGISNRVF  362 (611)
T ss_dssp             TT----TCCEEECS
T ss_pred             CC----CCceeeec
Confidence            85    45544433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=7e-27  Score=242.29  Aligned_cols=273  Identities=12%  Similarity=0.089  Sum_probs=178.4

Q ss_pred             CCcEEEeee-CCCeEEEecC---------eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEec
Q 047036          255 GVQSLTLGA-LDNSFLVSDL---------GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMS  323 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G~---------~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllss  323 (634)
                      ...+.+|+| +|+++++.|+         .|.+|.......... ......+| ..+...+|+|+        +.+|+ +
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-~~~~~~~~~~~V~~~~~s~d--------~~~l~-~  111 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-LCTAGVQTEAGVTDVAWVSE--------KGILV-A  111 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-GCSEEEECSSCEEEEEEETT--------TEEEE-E
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-EecccCCCCCCEEEEEEcCC--------CCEEE-E
Confidence            445888999 9999999874         366666533221111 11111122 12244455554        44443 4


Q ss_pred             CCCCCCCCCCcEEEEeCCCCcEEE----EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE
Q 047036          324 PLKDGKPQAPGVQQLDIETGKIVT----EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV  399 (634)
Q Consensus       324 s~d~~~~~~~TIrlWDleTGK~V~----~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V  399 (634)
                      +.|      ++|++||+.+|+.+.    .+.+|...|  ..++|+|+        +.+|++|+.|++|++||++++. ++
T Consensus       112 s~d------g~v~lWd~~~~~~~~~~~~~~~~h~~~V--~~v~~spd--------g~~l~sgs~dg~v~iwd~~~~~-~~  174 (357)
T 4g56_B          112 SDS------GAVELWEILEKESLLVNKFAKYEHDDIV--KTLSVFSD--------GTQAVSGGKDFSVKVWDLSQKA-VL  174 (357)
T ss_dssp             ETT------SCEEEC--------CCCCEEECCCSSCE--EEEEECSS--------SSEEEEEETTSCEEEEETTTTE-EE
T ss_pred             ECC------CEEEEeeccccceeEEEeeccCCCCCCE--EEEEECCC--------CCEEEEEeCCCeEEEEECCCCc-EE
Confidence            443      689999999998654    345899876  46699998        6799999999999999999864 46


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc--cccCCCCCeEEEEECCCC
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT--AFPGLGSPITHVDVTYDG  475 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt--~L~GH~d~ItsVdfSpDG  475 (634)
                      ..+.+|...               +.++++++++  .|++|+.||+|||||+.+++ ...  .+..|..+|++|+|+|++
T Consensus       175 ~~~~~h~~~---------------v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~  238 (357)
T 4g56_B          175 KSYNAHSSE---------------VNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEK  238 (357)
T ss_dssp             EEECCCSSC---------------EEEEEECTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTS
T ss_pred             EEEcCCCCC---------------EEEEEEccCCCceeeeeccCCceEEEECCCCc-eeeeeeeccccccccchhhhhcc
Confidence            777666543               5788998876  68999999999999998764 333  345678899999999985


Q ss_pred             -CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEE
Q 047036          476 -KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLV  553 (634)
Q Consensus       476 -k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Iv  553 (634)
                       .+|++ +.|++|+|||++    +++++..|.+|....                  ..+.|+|.        +  .++|+
T Consensus       239 ~~~la~g~~d~~i~~wd~~----~~~~~~~~~~~~~~v------------------~~l~~sp~--------~--~~~la  286 (357)
T 4g56_B          239 DDTFACGDETGNVSLVNIK----NPDSAQTSAVHSQNI------------------TGLAYSYH--------S--SPFLA  286 (357)
T ss_dssp             TTEEEEEESSSCEEEEESS----CGGGCEEECCCSSCE------------------EEEEECSS--------S--SCCEE
T ss_pred             cceEEEeecccceeEEECC----CCcEeEEEeccceeE------------------EEEEEcCC--------C--CCEEE
Confidence             57777 889999999986    566777777665311                  12445443        2  24565


Q ss_pred             E-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc-Cc-cccCCCCCCCEEE
Q 047036          554 A-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH-DK-FAVTDSPEAPLVV  619 (634)
Q Consensus       554 t-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~-d~-f~~~~~~~~~iiv  619 (634)
                      + |.|+.|.|||++.   ++              ++....|...|.++.|-. |. +-++++.|..|+|
T Consensus       287 sgs~D~~i~iwd~~~---~~--------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          287 SISEDCTVAVLDADF---SE--------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             EEETTSCEEEECTTS---CE--------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EEeCCCEEEEEECCC---Cc--------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence            5 7799999999862   32              245667899999999831 22 2233344566655

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=6.3e-26  Score=232.85  Aligned_cols=281  Identities=10%  Similarity=0.065  Sum_probs=183.7

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+.++++ +|+.+++.|   .+|.||....+....  ......+|. .+.+.+|+|        ++++|++++.|     
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--~~~~~~~h~~~v~~~~~sp--------~g~~l~s~s~D-----   82 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--KSVLSEGHQRTVRKVAWSP--------CGNYLASASFD-----   82 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--EEEECSSCSSCEEEEEECT--------TSSEEEEEETT-----
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--eeeeccccCCcEEEEEECC--------CCCEEEEEECC-----
Confidence            4677888 888888865   579999865442110  111123442 234455555        55677777765     


Q ss_pred             CCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEecccCCC
Q 047036          332 APGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVKGDS  407 (634)
Q Consensus       332 ~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~gh~s  407 (634)
                       ++|++||+.++  +++.++.+|...|  ..++|+|+        +.+|++|+.|++|++||++.+..  ++..+.+|..
T Consensus        83 -~~v~iw~~~~~~~~~~~~~~~h~~~v--~~v~~sp~--------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           83 -ATTCIWKKNQDDFECVTTLEGHENEV--KSVAWAPS--------GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             -SCEEEEEECCC-EEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             -CcEEEEEccCCCeEEEEEccCCCCCc--eEEEEeCC--------CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence             79999999887  5688999999986  46699998        67999999999999999987542  3455554443


Q ss_pred             CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~  484 (634)
                                     .+.+++++|+| +||+||.||+|+|||..+.+ .+...+.+|..+|++|+|+|||++||+ +.|+
T Consensus       152 ---------------~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          152 ---------------DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             ---------------CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ---------------CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence                           36789999998 79999999999999986542 134578999999999999999999999 9999


Q ss_pred             cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeec-CCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEE
Q 047036          485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLT-PLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIW  563 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~-Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiW  563 (634)
                      +|+|||....   +. ...+...  ...+..+++... ..|... ...+.|++.        +  ...++++.|+.|.+|
T Consensus       217 ~v~iW~~~~~---~~-~~~~~~~--~~~~~~~~~~~~~~~h~~~-v~~v~~~~~--------~--~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          217 TVRIWRQYLP---GN-EQGVACS--GSDPSWKCICTLSGFHSRT-IYDIAWCQL--------T--GALATACGDDAIRVF  279 (345)
T ss_dssp             CEEEEEEECT---TC-TTCCCCC-----CEEEEEEEECSSCSSC-EEEEEECTT--------T--CCEEEEETTSCEEEE
T ss_pred             eEEEeccccC---CC-Cccceee--ccCCccceeEEecCCCCCc-EEEEEEecC--------C--CEEEEEeCCCeEEEE
Confidence            9999997521   11 0001000  001212223221 112210 112444433        2  245566889999999


Q ss_pred             eChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          564 DFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       564 dl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      ++..-.......+       +........|...|..+.|
T Consensus       280 ~~~~~~~~~~~~~-------~~~~~~~~~h~~~V~~v~~  311 (345)
T 3fm0_A          280 QEDPNSDPQQPTF-------SLTAHLHQAHSQDVNCVAW  311 (345)
T ss_dssp             EECTTSCTTSCCE-------EEEEEETTSSSSCEEEEEE
T ss_pred             EeCCCCCcceeeE-------EEEeeecccccCcEeEeEE
Confidence            9864221111100       1111223467889999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=6.5e-26  Score=231.86  Aligned_cols=233  Identities=17%  Similarity=0.191  Sum_probs=168.5

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+.++.+ +++.+++.|   ..|.+|......... .....+.+|. .+..+.|.        +++. |++++.|     
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~~~~~h~~~v~~~~~~--------~~~~-l~s~s~d-----  163 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHTGYLSCCRFL--------DDNQ-IVTSSGD-----  163 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC-EEEEEEECCSSCEEEEEEE--------ETTE-EEEEETT-----
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc-eeEEEecCCCccEEEEEEC--------CCCc-EEEEECC-----
Confidence            3666777 777777754   477888764432111 1223345552 11233333        3333 5566554     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+++|+++.++.+|...|  ..++|+|+        +.++++|+.|++|++||++.+.+ ++++.+|..    
T Consensus       164 -~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~----  227 (340)
T 1got_B          164 -TTCALWDIETGQQTTTFTGHTGDV--MSLSLAPD--------TRLFVSGACDASAKLWDVREGMC-RQTFTGHES----  227 (340)
T ss_dssp             -SCEEEEETTTTEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTTCSE-EEEECCCSS----
T ss_pred             -CcEEEEECCCCcEEEEEcCCCCce--EEEEECCC--------CCEEEEEeCCCcEEEEECCCCee-EEEEcCCcC----
Confidence             799999999999999999999986  45699998        67999999999999999998654 577766654    


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc--cCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF--PGLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L--~GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                                 .+.+++++|+| +||+||.||+|||||+.+.+ ....+  +++..+|++|+|+|||++|++ +.|++|+
T Consensus       228 -----------~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~  295 (340)
T 1got_B          228 -----------DINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             -----------CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -----------CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence                       35789999998 79999999999999987653 33333  345568999999999999999 8999999


Q ss_pred             EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      |||+.    +++.+..|.+|.+..                  ..+.|+|.        |  ...+.+|.|+.|.|||
T Consensus       296 vwd~~----~~~~~~~~~~h~~~v------------------~~~~~s~d--------g--~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          296 VWDAL----KADRAGVLAGHDNRV------------------SCLGVTDD--------G--MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETT----TCCEEEEEECCSSCE------------------EEEEECTT--------S--SCEEEEETTSCEEEEC
T ss_pred             EEEcc----cCcEeeEeecCCCcE------------------EEEEEcCC--------C--CEEEEEcCCccEEecC
Confidence            99985    577777788776411                  12445444        3  2344457899999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=9.4e-26  Score=233.83  Aligned_cols=240  Identities=8%  Similarity=0.019  Sum_probs=167.6

Q ss_pred             cEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      .+.++++ +|+.+++.+  ..|.||....+.... .......+|.       .+...+.+++++++|++++.|      +
T Consensus        96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~-------~~V~~v~~spdg~~l~sgs~d------g  161 (357)
T 4g56_B           96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLL-VNKFAKYEHD-------DIVKTLSVFSDGTQAVSGGKD------F  161 (357)
T ss_dssp             CEEEEEEETTTEEEEEETTSCEEEC--------C-CCCEEECCCS-------SCEEEEEECSSSSEEEEEETT------S
T ss_pred             CEEEEEEcCCCCEEEEECCCEEEEeeccccceeE-EEeeccCCCC-------CCEEEEEECCCCCEEEEEeCC------C
Confidence            4778888 888888865  589999865433111 0112223442       223344445556677777765      7


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      +|++||+++|+++..|++|...|  ..++|+|++       ...+++|+.|++|++||++++... ..+..+        
T Consensus       162 ~v~iwd~~~~~~~~~~~~h~~~v--~~v~~s~~~-------~~~~~s~~~dg~v~~wd~~~~~~~-~~~~~~--------  223 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAHSSEV--NCVAACPGK-------DTIFLSCGEDGRILLWDTRKPKPA-TRIDFC--------  223 (357)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCE--EEEEECTTC-------SSCEEEEETTSCEEECCTTSSSCB-CBCCCT--------
T ss_pred             eEEEEECCCCcEEEEEcCCCCCE--EEEEEccCC-------CceeeeeccCCceEEEECCCCcee-eeeeec--------
Confidence            99999999999999999999986  456999983       247999999999999999986542 222111        


Q ss_pred             cccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-EcCCcEEEE
Q 047036          414 QGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-TTDTYLILI  489 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D~tIrLW  489 (634)
                           .....+.+++++|++  +||+|+.|+.|+|||+.+++ ....+.+|..+|++|+|||+| ++||+ +.|++|+||
T Consensus       224 -----~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw  297 (357)
T 4g56_B          224 -----ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL  297 (357)
T ss_dssp             -----TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             -----cccccccchhhhhcccceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence                 123357899999874  68999999999999998874 778899999999999999998 57888 889999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      |+.    .|+++. +.+|.+.                  ...+.|+|.     .  +   ..|++ |.|+.|++|++..
T Consensus       298 d~~----~~~~~~-~~~H~~~------------------V~~vafsP~-----d--~---~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          298 DAD----FSEVFR-DLSHRDF------------------VTGVAWSPL-----D--H---SKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CTT----SCEEEE-ECCCSSC------------------EEEEEECSS-----S--T---TEEEEEETTSCEEEEECC-
T ss_pred             ECC----CCcEeE-ECCCCCC------------------EEEEEEeCC-----C--C---CEEEEEcCCCeEEEEECCC
Confidence            975    455443 3345421                  023555553     1  2   35554 7899999999964

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=9.7e-25  Score=223.02  Aligned_cols=231  Identities=12%  Similarity=0.166  Sum_probs=161.2

Q ss_pred             CCeEEEec---CeeeEEEccCCcee--cceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEe
Q 047036          265 DNSFLVSD---LGLQVYRNYNRGIH--NKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLD  339 (634)
Q Consensus       265 D~sfvv~G---~~igV~k~~~~gl~--~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWD  339 (634)
                      |+.+++.|   .+|.||........  .......+.+|.       .+...+.+++++.+|++++.|      ++|++||
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-------~~V~~~~~~~~~~~l~s~s~D------~~v~lwd  104 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-------HFVSDLALSQENCFAISSSWD------KTLRLWD  104 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-------SCEEEEEECSSTTEEEEEETT------SEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-------CceEEEEECCCCCEEEEEcCC------CcEEEEE
Confidence            77777765   47889986443211  011223455652       223334445556677777765      7999999


Q ss_pred             CCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccc
Q 047036          340 IETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFS  419 (634)
Q Consensus       340 leTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~  419 (634)
                      +.+|++++++.+|...|  ..++|+|+        +.+|++|+.|++|++||++.. +. ..+...        .+    
T Consensus       105 ~~~~~~~~~~~~h~~~v--~~v~~sp~--------~~~l~s~~~d~~i~~wd~~~~-~~-~~~~~~--------~~----  160 (343)
T 2xzm_R          105 LRTGTTYKRFVGHQSEV--YSVAFSPD--------NRQILSAGAEREIKLWNILGE-CK-FSSAEK--------EN----  160 (343)
T ss_dssp             TTSSCEEEEEECCCSCE--EEEEECSS--------TTEEEEEETTSCEEEEESSSC-EE-EECCTT--------TS----
T ss_pred             CCCCcEEEEEcCCCCcE--EEEEECCC--------CCEEEEEcCCCEEEEEeccCC-ce-eeeecc--------cC----
Confidence            99999999999999986  46699998        679999999999999999842 22 222100        01    


Q ss_pred             cCcceEEEEECCCC-----------eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          420 RGTNFQCFASTGDG-----------SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       420 ~~~~fssva~s~dG-----------~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                      +...+.|++++|++           +||+|+.||+|||||...  +....+.+|..+|++|+|+|||++||+ +.|++|+
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            22346888998875           699999999999999543  356678899999999999999999999 8999999


Q ss_pred             EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      |||+..   .+.....|.                ..+..   ..+.|+|.        +   ++|+++.++.|.+||+..
T Consensus       239 iwd~~~---~~~~~~~~~----------------~~~~v---~~v~~sp~--------~---~~la~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          239 IWDILN---LTYPQREFD----------------AGSTI---NQIAFNPK--------L---QWVAVGTDQGVKIFNLMT  285 (343)
T ss_dssp             EEESSC---CSSCSEEEE----------------CSSCE---EEEEECSS--------S---CEEEEEESSCEEEEESSS
T ss_pred             EEECCC---Ccccceeec----------------CCCcE---EEEEECCC--------C---CEEEEECCCCEEEEEeCC
Confidence            999741   121111111                01110   12444443        2   577788899999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=4.5e-25  Score=230.47  Aligned_cols=245  Identities=17%  Similarity=0.246  Sum_probs=173.5

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ...++.+ +|+.+++.|   ..|.||......     ....+.+|. .+.+.+|+        +++++|++++.|     
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~--------p~~~~l~s~s~d-----  186 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----IVMILQGHEQDIYSLDYF--------PSGDKLVSGSGD-----  186 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEC--------TTSSEEEEEETT-----
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEccCCCCEEEEEEc--------CCCCEEEEecCC-----
Confidence            4677888 888888865   588999865432     233455652 22344444        455667777765     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                       ++|++||+.+|+++.++..+. .|  ..++|+| +        +.++++|+.|++|++||++++.. +..+......  
T Consensus       187 -~~v~iwd~~~~~~~~~~~~~~-~v--~~~~~~~~~--------~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~--  251 (393)
T 1erj_A          187 -RTVRIWDLRTGQCSLTLSIED-GV--TTVAVSPGD--------GKYIAAGSLDRAVRVWDSETGFL-VERLDSENES--  251 (393)
T ss_dssp             -SEEEEEETTTTEEEEEEECSS-CE--EEEEECSTT--------CCEEEEEETTSCEEEEETTTCCE-EEEEC-------
T ss_pred             -CcEEEEECCCCeeEEEEEcCC-Cc--EEEEEECCC--------CCEEEEEcCCCcEEEEECCCCcE-EEeecccccC--
Confidence             799999999999999988654 33  4669998 5        67999999999999999998653 4444211000  


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-----------cccccccCCCCCeEEEEECCCCCEE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-----------QAKTAFPGLGSPITHVDVTYDGKWI  478 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-----------~akt~L~GH~d~ItsVdfSpDGk~L  478 (634)
                        ..+    +...+.+++++++| +||+||.||+|||||+.+.+           .+...+.+|.+.|++|+|+|+|++|
T Consensus       252 --~~~----h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  325 (393)
T 1erj_A          252 --GTG----HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI  325 (393)
T ss_dssp             ---CC----CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEE
T ss_pred             --CCC----CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEE
Confidence              001    23357899999999 79999999999999986531           1334677999999999999999999


Q ss_pred             EE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc-cccccccCCCCceEEEE-E
Q 047036          479 LG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG-HFSWVTENGKQERHLVA-T  555 (634)
Q Consensus       479 lS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a-~Fs~~t~~g~~E~~Ivt-S  555 (634)
                      ++ +.|++|+|||+.    +|+.+..+.+|.+..    .              .+.|.++ .|++      +...|++ |
T Consensus       326 ~sgs~D~~v~iwd~~----~~~~~~~l~~h~~~v----~--------------~v~~~~~~~~~p------~~~~l~sgs  377 (393)
T 1erj_A          326 LSGSKDRGVLFWDKK----SGNPLLMLQGHRNSV----I--------------SVAVANGSSLGP------EYNVFATGS  377 (393)
T ss_dssp             EEEETTSEEEEEETT----TCCEEEEEECCSSCE----E--------------EEEECSSCTTCT------TCEEEEEEE
T ss_pred             EEEeCCCeEEEEECC----CCeEEEEECCCCCCE----E--------------EEEecCCcCcCC------CCCEEEEEC
Confidence            99 999999999986    688888888886421    1              2333332 2332      1245555 7


Q ss_pred             cCCeEEEEeChhh
Q 047036          556 VGKFSVIWDFQQV  568 (634)
Q Consensus       556 tg~~viiWdl~~v  568 (634)
                      .|+.|.||++++.
T Consensus       378 ~Dg~i~iW~~~~~  390 (393)
T 1erj_A          378 GDCKARIWKYKKI  390 (393)
T ss_dssp             TTSEEEEEEEEEC
T ss_pred             CCCcEEECccccc
Confidence            7999999998753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.5e-25  Score=223.11  Aligned_cols=192  Identities=8%  Similarity=0.071  Sum_probs=137.9

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEe-cC-CC-CCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRF-DG-GS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~-~~-~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      .+.++.+ ++  +++.|   .+|.+|....+...   ....+ .+ |. ++.+++|+|        ++++|++++.|   
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp--------~~~~las~s~D---   79 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRP--------HTSLLAAGSFD---   79 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECT--------TSSEEEEEETT---
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECC--------CCCEEEEEeCC---
Confidence            4566666 44  55543   57888886543211   11223 22 42 224445555        55667777765   


Q ss_pred             CCCCcEEEEeCC-------CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC---ceE
Q 047036          330 PQAPGVQQLDIE-------TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS---GIV  399 (634)
Q Consensus       330 ~~~~TIrlWDle-------TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~---~~V  399 (634)
                         ++|++||++       +++++..+.+|...|  ..++|+|+        +.+|++|+.|++|++||++..+   .++
T Consensus        80 ---~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V--~~v~~sp~--------g~~las~s~D~~v~iwd~~~~~~~~~~~  146 (330)
T 2hes_X           80 ---STVSIWAKEESADRTFEMDLLAIIEGHENEV--KGVAWSND--------GYYLATCSRDKSVWIWETDESGEEYECI  146 (330)
T ss_dssp             ---SCEEEEEC-------CCCEEEEEEC----CE--EEEEECTT--------SCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred             ---CcEEEEEcccCcCccccceeEEEEcCCCCcE--EEEEECCC--------CCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence               799999985       356888999999986  46699998        6899999999999999996432   345


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccccCCCCCeEEEEECCC--C
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYD--G  475 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpD--G  475 (634)
                      ..+.+|..               .+.+++++|++ +||+||.||+|||||..+.. .+...|.+|..+|++++|+|+  |
T Consensus       147 ~~~~~h~~---------------~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          147 SVLQEHSQ---------------DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             EEECCCSS---------------CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             EEeccCCC---------------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence            56665544               36789999998 89999999999999976531 255688999999999999999  7


Q ss_pred             CEEEE-EcCCcEEEEEcc
Q 047036          476 KWILG-TTDTYLILICTL  492 (634)
Q Consensus       476 k~LlS-S~D~tIrLWD~~  492 (634)
                      .+|++ +.|++|+|||+.
T Consensus       212 ~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          212 FRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             CEEEEEETTSCEEEEEEE
T ss_pred             eEEEEEeCCCeEEEEEec
Confidence            89999 899999999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=9.5e-25  Score=221.72  Aligned_cols=204  Identities=16%  Similarity=0.199  Sum_probs=156.9

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCC-----CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIET-----GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleT-----GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      .++|++++.|      ++|++||+.+     |..+++|++|...|  ..++|+|+        +.++++|+.|++|++||
T Consensus        30 ~~~l~s~s~D------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v--~~~~~s~d--------g~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           30 PNLLLSASRD------KTLISWKLTGDDQKFGVPVRSFKGHSHIV--QDCTLTAD--------GAYALSASWDKTLRLWD   93 (319)
T ss_dssp             TTEEEEEETT------SEEEEEEEEEETTEEEEEEEEEECCSSCE--EEEEECTT--------SSEEEEEETTSEEEEEE
T ss_pred             ccEEEEecCC------ccEEEecCCCCCccccccceEEeCCcccE--EEEEECCC--------CCEEEEEeCCCEEEEEE
Confidence            3677788775      7999999864     56789999999986  46699998        67999999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVD  470 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVd  470 (634)
                      ++++. .++.+.+|...               +.++++++++ +||+||.||+|||||+.+  .+...+.+|..+|.+|.
T Consensus        94 ~~~~~-~~~~~~~h~~~---------------v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           94 VATGE-TYQRFVGHKSD---------------VMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             TTTTE-EEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEE
T ss_pred             CCCCC-eeEEEccCCCc---------------EEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEE
Confidence            99865 46777766543               5788999998 799999999999999875  35677889999999999


Q ss_pred             ECCC------CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          471 VTYD------GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       471 fSpD------Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      |+|+      +.+|++ +.|++|++||+.    .++....|.+|....                  ..+.|+|.      
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v------------------~~~~~sp~------  207 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNI------------------NTLTASPD------  207 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCE------------------EEEEECTT------
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcE------------------EEEEEcCC------
Confidence            9995      558888 999999999986    566667777775311                  12444443      


Q ss_pred             cCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036          544 ENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH  604 (634)
Q Consensus       544 ~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~  604 (634)
                        |   +.|++ +.|+.|.+||+..   ++.             .+.+.. ...|..+.|-.
T Consensus       208 --g---~~l~s~~~dg~i~iwd~~~---~~~-------------~~~~~~-~~~v~~~~~sp  247 (319)
T 3frx_A          208 --G---TLIASAGKDGEIMLWNLAA---KKA-------------MYTLSA-QDEVFSLAFSP  247 (319)
T ss_dssp             --S---SEEEEEETTCEEEEEETTT---TEE-------------EEEEEC-CSCEEEEEECS
T ss_pred             --C---CEEEEEeCCCeEEEEECCC---CcE-------------EEEecC-CCcEEEEEEcC
Confidence              3   35554 7799999999874   211             134443 45677777733

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.1e-25  Score=224.16  Aligned_cols=190  Identities=9%  Similarity=0.115  Sum_probs=138.1

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCC--cEEEEE-ec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETG--KIVTEW-KF-EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTG--K~V~~l-kg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      +|++++.|      ++|++||+.++  +++..+ .+ |...|  ..++|+|+        +.+|++|+.|++|++||++.
T Consensus        26 ~las~~~D------~~i~lw~~~~~~~~~~~~~~~~~h~~~v--~~v~~sp~--------~~~las~s~D~~v~iw~~~~   89 (330)
T 2hes_X           26 ILATGSTD------RKIKLVSVKYDDFTLIDVLDETAHKKAI--RSVAWRPH--------TSLLAAGSFDSTVSIWAKEE   89 (330)
T ss_dssp             EEEEEESS------SCEEEEECSSSCCEEEEEECTTCCCSCE--EEEEECTT--------SSEEEEEETTSCEEEEEC--
T ss_pred             EEEEEcCC------CEEEEEEecCCCeEEEEEEecCCccCCE--EEEEECCC--------CCEEEEEeCCCcEEEEEccc
Confidence            56666665      79999999986  567777 45 99876  46699998        67999999999999999863


Q ss_pred             C------CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc-cc--cccccccCCCC
Q 047036          395 R------SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-MR--QAKTAFPGLGS  464 (634)
Q Consensus       395 ~------~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-~r--~akt~L~GH~d  464 (634)
                      .      ..++..+.+|..               .+.+++++|+| +||+||.|++|||||+.. .+  .+...+.+|..
T Consensus        90 ~~~~~~~~~~~~~~~~h~~---------------~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           90 SADRTFEMDLLAIIEGHEN---------------EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             -----CCCEEEEEEC-------------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             CcCccccceeEEEEcCCCC---------------cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence            2      123455655543               36899999999 799999999999999842 11  24457889999


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT  543 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t  543 (634)
                      +|++|+|+|+|++|++ +.|++|+|||+..  ...+++..|.+|.+..                  ..+.|.|.      
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~--~~~~~~~~~~~h~~~v------------------~~~~~~~~------  208 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYD--DDWECVAVLNGHEGTV------------------WSSDFDKT------  208 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCE------------------EEEEECCS------
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCC--CCeeEEEEccCCCCcE------------------EEEEecCC------
Confidence            9999999999999999 9999999999752  1125666777776411                  12444443      


Q ss_pred             cCCCCceEEEEEcCCeEEEEeChh
Q 047036          544 ENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       544 ~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                        +.....+.++.|+.|.+||+..
T Consensus       209 --~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          209 --EGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             --SSSCEEEEEETTSCEEEEEEEE
T ss_pred             --CCeeEEEEEeCCCeEEEEEecC
Confidence              1112344457899999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=7.9e-25  Score=245.00  Aligned_cols=241  Identities=14%  Similarity=0.203  Sum_probs=174.4

Q ss_pred             CcEEEeee-CCC-eEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDN-SFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~-sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ..+.++++ +++ .+++.|   ..|.+|.....+.........+.+|.       .+...+.++.++++|++++.|    
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~g~~l~sgs~D----  451 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-------HFVEDVVLSSDGQFALSGSWD----  451 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-------SCEEEEEECTTSSEEEEEETT----
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-------CcEEEEEECCCCCEEEEEeCC----
Confidence            34677777 454 677765   58999987554322222334566663       122333444556677888775    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                        ++|++||+.+|++++++.+|...|  ..++|+|+        +.+|+||+.|++|++||++.. +. ..+....    
T Consensus       452 --g~v~vwd~~~~~~~~~~~~h~~~v--~~~~~s~~--------~~~l~s~s~D~~i~iwd~~~~-~~-~~~~~~~----  513 (694)
T 3dm0_A          452 --GELRLWDLAAGVSTRRFVGHTKDV--LSVAFSLD--------NRQIVSASRDRTIKLWNTLGE-CK-YTISEGG----  513 (694)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSCE--EEEEECTT--------SSCEEEEETTSCEEEECTTSC-EE-EEECSST----
T ss_pred             --CcEEEEECCCCcceeEEeCCCCCE--EEEEEeCC--------CCEEEEEeCCCEEEEEECCCC-cc-eeeccCC----
Confidence              799999999999999999999986  45699998        678999999999999998754 22 2221000    


Q ss_pred             ccccccccccCcceEEEEECCCC---eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG---SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYL  486 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG---~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tI  486 (634)
                         .+    +...++|++++|++   .|++||.||+|||||+.+. +....+.+|..+|++|+|||||++|++ +.|++|
T Consensus       514 ---~~----h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          514 ---EG----HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             ---TS----CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             ---CC----CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence               01    22347899999986   5999999999999999876 477789999999999999999999999 899999


Q ss_pred             EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      +|||+.    +|+++..+..+..                   ...+.|+|.        +   .+|+++.++.|.|||++
T Consensus       586 ~iwd~~----~~~~~~~~~~~~~-------------------v~~~~~sp~--------~---~~l~~~~~~~i~iwd~~  631 (694)
T 3dm0_A          586 LLWDLA----EGKKLYSLEANSV-------------------IHALCFSPN--------R---YWLCAATEHGIKIWDLE  631 (694)
T ss_dssp             EEEETT----TTEEEECCBCSSC-------------------EEEEEECSS--------S---SEEEEEETTEEEEEETT
T ss_pred             EEEECC----CCceEEEecCCCc-------------------EEEEEEcCC--------C---cEEEEEcCCCEEEEECC
Confidence            999986    4555544432210                   012344443        2   57888888999999997


Q ss_pred             h
Q 047036          567 Q  567 (634)
Q Consensus       567 ~  567 (634)
                      .
T Consensus       632 ~  632 (694)
T 3dm0_A          632 S  632 (694)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=3.3e-24  Score=230.47  Aligned_cols=249  Identities=14%  Similarity=0.183  Sum_probs=184.7

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++++ +|+.+++.+   ..|.+|.....      ....+.+|.       .+...+.+++++++|++++.+      
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------~~~~~~~~~-------~~v~~~~~s~~g~~l~~~~~d------  365 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------HLQTLTGHS-------SSVWGVAFSPDGQTIASASDD------  365 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEEEECCCS-------SCEEEEEECTTSSEEEEEETT------
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC------eeEEEeCCC-------CCEEEEEECCCCCEEEEEeCC------
Confidence            4667777 777777654   46888874332      123344442       122334445555667777664      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|++||. +|+++.++.+|...|  ..++|+|+        ++.|++|+.|++|++||.. + ..++.+.+|...    
T Consensus       366 g~v~~~~~-~~~~~~~~~~~~~~v--~~~~~s~d--------g~~l~~~~~d~~v~~~~~~-~-~~~~~~~~~~~~----  428 (577)
T 2ymu_A          366 KTVKLWNR-NGQLLQTLTGHSSSV--RGVAFSPD--------GQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSS----  428 (577)
T ss_dssp             SEEEEEET-TCCEEEEEECCSSCE--EEEEECTT--------SSCEEEEETTSEEEEECTT-C-CEEEEEECCSSC----
T ss_pred             CEEEEEcC-CCCEEEEecCCCCCe--EEEEECCC--------CCEEEEEeCCCEEEEEeCC-C-CEEEEecCCCCC----
Confidence            79999995 589999999999976  45699998        6789999999999999964 2 346777666543    


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                                 +.+++++|++ +||+|+.|++|+|||..+  +....+.+|..+|++|+|||||++||+ +.|++|+|||
T Consensus       429 -----------v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~  495 (577)
T 2ymu_A          429 -----------VWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  495 (577)
T ss_dssp             -----------EEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             -----------eEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence                       5789999998 899999999999999754  366788999999999999999999999 8999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhc
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKN  570 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~  570 (634)
                      .     +|+++..|.+|.+..                  ..+.|+|.        |  ...++++.|+.|.+||+.    
T Consensus       496 ~-----~~~~~~~~~~h~~~v------------------~~l~~s~d--------g--~~l~s~~~dg~v~lwd~~----  538 (577)
T 2ymu_A          496 R-----NGQLLQTLTGHSSSV------------------RGVAFSPD--------G--QTIASASDDKTVKLWNRN----  538 (577)
T ss_dssp             T-----TSCEEEEEECCSSCE------------------EEEEECTT--------S--SCEEEEETTSEEEEECTT----
T ss_pred             C-----CCCEEEEEeCCCCCE------------------EEEEEcCC--------C--CEEEEEECcCEEEEEeCC----
Confidence            4     588888888886411                  12445544        3  234445789999999953    


Q ss_pred             ccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036          571 SAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH  604 (634)
Q Consensus       571 ~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~  604 (634)
                      ++.             ...+..|.+.|..+.|-+
T Consensus       539 ~~~-------------~~~~~~h~~~v~~~~fs~  559 (577)
T 2ymu_A          539 GQL-------------LQTLTGHSSSVWGVAFSP  559 (577)
T ss_dssp             SCE-------------EEEEECCSSCEEEEEECT
T ss_pred             CCE-------------EEEEcCCCCCEEEEEEcC
Confidence            322             246788999999888843

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=9.6e-25  Score=219.09  Aligned_cols=198  Identities=7%  Similarity=0.036  Sum_probs=146.9

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+.++++ +|+.+++.|   .+|.||.......   ..+..|.+|. ++.+++|+|.      .++++|++++.|     
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---~~~~~l~gH~~~V~~v~~s~~------~~g~~l~s~s~D-----   76 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHP------KFGTILASCSYD-----   76 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---CCCEEECCCSSCEEEEEECCG------GGCSEEEEEETT-----
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---EEEEEEccccCCeEEEEecCC------CcCCEEEEEcCC-----
Confidence            4677777 788888865   5899998643211   1234566663 2345555432      135677788775     


Q ss_pred             CCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-eEEecccCCCC
Q 047036          332 APGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-IVQNMVKGDSP  408 (634)
Q Consensus       332 ~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-~Vq~l~gh~s~  408 (634)
                       ++|++||+++|+  .+..+.+|...|  ..++|+|+..      +.+|++|+.|++|++||++.... ....+.+|.. 
T Consensus        77 -~~v~iWd~~~~~~~~~~~~~~h~~~v--~~v~~~p~~~------g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-  146 (297)
T 2pm7_B           77 -GKVMIWKEENGRWSQIAVHAVHSASV--NSVQWAPHEY------GPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-  146 (297)
T ss_dssp             -TEEEEEEBSSSCBCCCEEECCCSSCE--EEEEECCGGG------CSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-
T ss_pred             -CEEEEEEcCCCceEEEEEeecCCCce--eEEEeCcCCC------CcEEEEEECCCcEEEEEecCCCceeeeeeecccC-
Confidence             799999999984  678899999986  4569999622      46899999999999999987532 1234444443 


Q ss_pred             ccccccccccccCcceEEEEECCC-------------C-eEEEEECCCcEEEEecccccc---ccccccCCCCCeEEEEE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGD-------------G-SIVVGSLDGKIRLYSKTSMRQ---AKTAFPGLGSPITHVDV  471 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~d-------------G-~IASGS~DGtIRLWD~~t~r~---akt~L~GH~d~ItsVdf  471 (634)
                                    .+.+++++|+             + +||+||.||+|||||+.+.+.   ....|.+|.++|++|+|
T Consensus       147 --------------~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          147 --------------GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             --------------CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             --------------ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence                          3577888875             3 799999999999999876421   34578999999999999


Q ss_pred             CCCC---CEEEE-EcCCcEEEEEcc
Q 047036          472 TYDG---KWILG-TTDTYLILICTL  492 (634)
Q Consensus       472 SpDG---k~LlS-S~D~tIrLWD~~  492 (634)
                      +|+|   ++||+ +.|++|+|||+.
T Consensus       213 sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             CCCCCCceEEEEEECCCcEEEEEeC
Confidence            9995   89999 999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=1.5e-24  Score=233.20  Aligned_cols=226  Identities=15%  Similarity=0.224  Sum_probs=169.5

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++++ +|+.+++.|   ..|.+|... ..     ....+.+|.       .+...+.+++++++|++++.|      
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~-----~~~~~~~~~-------~~v~~~~~s~dg~~l~~~~~d------  406 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHS-------SSVRGVAFSPDGQTIASASDD------  406 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETT-CC-----EEEEEECCS-------SCEEEEEECTTSSCEEEEETT------
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCC-CC-----EEEEecCCC-------CCeEEEEECCCCCEEEEEeCC------
Confidence            4666777 777777765   367777632 11     223444442       122333444555667777665      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|++||. +|++++++.+|...|  ..++|+|+        +..+++|+.|++|++||...  ..+..+.+|..     
T Consensus       407 ~~v~~~~~-~~~~~~~~~~~~~~v--~~~~~s~d--------~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~-----  468 (577)
T 2ymu_A          407 KTVKLWNR-NGQLLQTLTGHSSSV--WGVAFSPD--------DQTIASASDDKTVKLWNRNG--QLLQTLTGHSS-----  468 (577)
T ss_dssp             SEEEEECT-TCCEEEEEECCSSCE--EEEEECTT--------SSEEEEEETTSEEEEEETTS--CEEEEEECCSS-----
T ss_pred             CEEEEEeC-CCCEEEEecCCCCCe--EEEEECCC--------CCEEEEEcCCCEEEEEECCC--CEEEEEcCCCC-----
Confidence            79999995 589999999999976  45699998        67999999999999999643  34567765544     


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                                .+.+++++|+| +||+|+.|++|||||..+ + ....+.+|..+|++|+|||||++||+ +.|++|+|||
T Consensus       469 ----------~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          469 ----------SVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             ----------CEEEEEECTTSCEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ----------CEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence                      36789999999 799999999999999654 3 67789999999999999999999999 8999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      .     +|+++..|.+|.+..                  ..+.|+|+        |  ...++++.|+.|++||
T Consensus       537 ~-----~~~~~~~~~~h~~~v------------------~~~~fs~d--------g--~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          537 R-----NGQLLQTLTGHSSSV------------------WGVAFSPD--------G--QTIASASSDKTVKLWN  577 (577)
T ss_dssp             T-----TSCEEEEEECCSSCE------------------EEEEECTT--------S--SCEEEEETTSCEEEEC
T ss_pred             C-----CCCEEEEEcCCCCCE------------------EEEEEcCC--------C--CEEEEEeCCCEEEEeC
Confidence            4     588888888886411                  13555554        3  2344557899999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=1.2e-24  Score=218.39  Aligned_cols=200  Identities=9%  Similarity=0.059  Sum_probs=143.9

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCC--CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIET--GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleT--GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      ++.++++|++++.|      ++|++||+++  ++++.+|.+|...|  ..++|+|+..      +..|+||+.|++|++|
T Consensus        17 ~s~~g~~las~s~D------~~v~iw~~~~~~~~~~~~l~gH~~~V--~~v~~s~~~~------g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B           17 MDYYGKRMATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKF------GTILASCSYDGKVMIW   82 (297)
T ss_dssp             ECTTSSEEEEEETT------SCEEEEEBCSSCBCCCEEECCCSSCE--EEEEECCGGG------CSEEEEEETTTEEEEE
T ss_pred             ECCCCCEEEEEeCC------CEEEEEecCCCCcEEEEEEccccCCe--EEEEecCCCc------CCEEEEEcCCCEEEEE
Confidence            34445667777765      7999999974  47899999999986  4569986411      4799999999999999


Q ss_pred             EcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEecccccc-ccccccCCCCC
Q 047036          391 DMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQ-AKTAFPGLGSP  465 (634)
Q Consensus       391 D~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~-akt~L~GH~d~  465 (634)
                      |++.+. ..+..+.+|..               .+.+++++|+  | +||+|+.||+|||||+.+... ....+.+|..+
T Consensus        83 d~~~~~~~~~~~~~~h~~---------------~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSA---------------SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EBSSSCBCCCEEECCCSS---------------CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EcCCCceEEEEEeecCCC---------------ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence            998753 22344544433               4688999986  6 799999999999999876421 23567899999


Q ss_pred             eEEEEECCC-------------CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          466 ITHVDVTYD-------------GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       466 ItsVdfSpD-------------Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                      |++++|+|+             |++||+ +.|++|+|||+.........+..|.+|.+..                  ..
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V------------------~~  209 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV------------------RD  209 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE------------------EE
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce------------------EE
Confidence            999999997             579999 9999999999862110111444566665311                  23


Q ss_pred             cccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          532 NKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      +.|+|..        .....|++ |.|+.|.+||+..
T Consensus       210 v~~sp~~--------~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          210 VAWSPTV--------LLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEECCCC--------SSSEEEEEEETTSCEEEEEESS
T ss_pred             EEECCCC--------CCceEEEEEECCCcEEEEEeCC
Confidence            5555541        11245555 7799999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=6e-24  Score=212.14  Aligned_cols=194  Identities=19%  Similarity=0.259  Sum_probs=150.1

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .+.+++++++|++++.|      ++|++||+.+|+.+..+.+|...|  ..++|+|+        +++|++|+.|++|++
T Consensus        28 ~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           28 SVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLGI--SDVAWSSD--------SNLLVSASDDKTLKI   91 (312)
T ss_dssp             EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSEEEE
T ss_pred             EEEECCCCCEEEEeeCC------CeEEEEeCCCcccchhhccCCCce--EEEEEcCC--------CCEEEEECCCCEEEE
Confidence            34444455667777765      699999999999999999999986  46699998        679999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      ||++++.+ +..+.+|..               .+.+++++|++ +||+|+.||+|+|||+.+++ ....+++|..+|.+
T Consensus        92 wd~~~~~~-~~~~~~~~~---------------~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~  154 (312)
T 4ery_A           92 WDVSSGKC-LKTLKGHSN---------------YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSA  154 (312)
T ss_dssp             EETTTCCE-EEEEECCSS---------------CEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEE
T ss_pred             EECCCCcE-EEEEcCCCC---------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEE
Confidence            99998654 567765544               35788999998 89999999999999998864 67789999999999


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCC
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGK  547 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~  547 (634)
                      |+|+|+|++|++ +.|++|++||+.    .++.+..+..+..   +.              ...+.|+|.        + 
T Consensus       155 ~~~~~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~---~~--------------~~~~~~~~~--------~-  204 (312)
T 4ery_A          155 VHFNRDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDN---PP--------------VSFVKFSPN--------G-  204 (312)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSC---CC--------------EEEEEECTT--------S-
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCC---Cc--------------eEEEEECCC--------C-
Confidence            999999999999 899999999986    4555444332211   00              011333333        2 


Q ss_pred             CceEEEEEcCCeEEEEeChh
Q 047036          548 QERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       548 ~E~~IvtStg~~viiWdl~~  567 (634)
                       ...++++.++.|.+||+..
T Consensus       205 -~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          205 -KYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             -SEEEEEETTTEEEEEETTT
T ss_pred             -CEEEEEcCCCeEEEEECCC
Confidence             3455557899999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=3.6e-24  Score=221.31  Aligned_cols=217  Identities=12%  Similarity=0.107  Sum_probs=148.6

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCC------------------------
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSS------------------------  370 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~------------------------  370 (634)
                      +++++|++++.|      ++|++||+.+++.+..+..|...|  ..++|+|+++.-                        
T Consensus        74 ~d~~~l~s~s~D------g~v~vWd~~~~~~~~~~~~~~~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~  145 (354)
T 2pbi_B           74 KDKRRIVSSSQD------GKVIVWDSFTTNKEHAVTMPCTWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA  145 (354)
T ss_dssp             TTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred             CCCCEEEEEeCC------CeEEEEECCCCCcceEEecCCCCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence            344556666654      688888888887776666655443  123444443200                        


Q ss_pred             -------C---------CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC--C
Q 047036          371 -------Q---------LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG--D  432 (634)
Q Consensus       371 -------q---------~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~--d  432 (634)
                             +         ...+..|++|+.|++|++||++++. +++.+.+|...               +.++++++  +
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~---------------v~~~~~~~~~~  209 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGAD---------------VLCLDLAPSET  209 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSC---------------EEEEEECCCSS
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCC---------------eEEEEEEeCCC
Confidence                   0         0014689999999999999999865 46777766543               46677765  4


Q ss_pred             C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCC
Q 047036          433 G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGN  510 (634)
Q Consensus       433 G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~  510 (634)
                      | +||+||.||+|+|||+.+++ +...+.+|..+|++|+|+|+|++|++ +.|++|+|||++    .++.+..|..+.. 
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----~~~~~~~~~~~~~-  283 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR----ADREVAIYSKESI-  283 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTC-
T ss_pred             CCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCc-
Confidence            5 79999999999999998874 77789999999999999999999999 999999999986    3443333332110 


Q ss_pred             CCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEE
Q 047036          511 KIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKI  590 (634)
Q Consensus       511 ~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i  590 (634)
                                     ......+.|+|.        |  ...++++.|+.|.+||+..   +..             ...+
T Consensus       284 ---------------~~~~~~~~~s~~--------g--~~l~~g~~d~~i~vwd~~~---~~~-------------~~~l  322 (354)
T 2pbi_B          284 ---------------IFGASSVDFSLS--------G--RLLFAGYNDYTINVWDVLK---GSR-------------VSIL  322 (354)
T ss_dssp             ---------------CSCEEEEEECTT--------S--SEEEEEETTSCEEEEETTT---CSE-------------EEEE
T ss_pred             ---------------ccceeEEEEeCC--------C--CEEEEEECCCcEEEEECCC---Cce-------------EEEE
Confidence                           000012333333        3  2344457799999999853   322             2467


Q ss_pred             eccCCCeeeecc
Q 047036          591 VLKDESIVESRF  602 (634)
Q Consensus       591 ~~~~~~i~~~~f  602 (634)
                      ..|...|..+.|
T Consensus       323 ~~h~~~v~~l~~  334 (354)
T 2pbi_B          323 FGHENRVSTLRV  334 (354)
T ss_dssp             CCCSSCEEEEEE
T ss_pred             ECCCCcEEEEEE
Confidence            789999998888

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=2.4e-24  Score=238.61  Aligned_cols=199  Identities=12%  Similarity=0.095  Sum_probs=151.8

Q ss_pred             CCcEEEeee-CCCeEEEe--cCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+...+++| +|+.+++.  +..|.+|......     ....|.+|. .+..++|+|+        +++|++++.|    
T Consensus        18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~-----~~~~~~~h~~~v~~~~~spd--------g~~lasg~~d----   80 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT-----DTEIYTEHSHQTTVAKTSPS--------GYYCASGDVH----   80 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEETTEEEEEETTCSS-----CCEEECCCSSCEEEEEECTT--------SSEEEEEETT----
T ss_pred             cCceeEEeeCCCCCEEEeCCCCEEEEecCCCcc-----cCeEecCCCCceEEEEECCC--------CcEEEEEeCC----
Confidence            345677888 88877775  4688888864332     233456663 2345556655        4567777765    


Q ss_pred             CCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC----CeEEEEEcCCCCceEEeccc
Q 047036          331 QAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD----NRLCQWDMRDRSGIVQNMVK  404 (634)
Q Consensus       331 ~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D----~tIklWD~R~~~~~Vq~l~g  404 (634)
                        ++|++||+.++  .++.++.+|...|  ..++|+|+        +..|++++.+    ++|++||...   .+..+.+
T Consensus        81 --~~v~lWd~~~~~~~~~~~~~~~~~~v--~~v~fs~d--------g~~l~~~~~~~~~~~~v~~wd~~~---~~~~l~g  145 (611)
T 1nr0_A           81 --GNVRIWDTTQTTHILKTTIPVFSGPV--KDISWDSE--------SKRIAAVGEGRERFGHVFLFDTGT---SNGNLTG  145 (611)
T ss_dssp             --SEEEEEESSSTTCCEEEEEECSSSCE--EEEEECTT--------SCEEEEEECCSSCSEEEEETTTCC---BCBCCCC
T ss_pred             --CCEEEeECCCCcceeeEeecccCCce--EEEEECCC--------CCEEEEEECCCCceeEEEEeeCCC---CcceecC
Confidence              79999999765  4567899999986  46699999        6789888876    3899999642   2355666


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                      |..+               +.+++|+|++  .||+||.|++|||||..+++ ...+|.+|..+|++|+|||||++||+ +
T Consensus       146 h~~~---------------v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          146 QARA---------------MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             CSSC---------------EEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCC---------------ceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCCEEEEEE
Confidence            6543               5789999997  49999999999999988764 67789999999999999999999999 9


Q ss_pred             cCCcEEEEEcccccCCCCeeeeec
Q 047036          482 TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       482 ~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      .|++|+|||+.    +|+++..|.
T Consensus       210 ~D~~i~lwd~~----~g~~~~~~~  229 (611)
T 1nr0_A          210 GDGTIVLYNGV----DGTKTGVFE  229 (611)
T ss_dssp             TTSCEEEEETT----TCCEEEECB
T ss_pred             CCCcEEEEECC----CCcEeeeec
Confidence            99999999975    577766663

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=1.5e-24  Score=229.03  Aligned_cols=207  Identities=12%  Similarity=0.067  Sum_probs=147.2

Q ss_pred             cEEEeee-C-CCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          257 QSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       257 ~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      .+.++++ | +..+|+.|   ..|.||.......   .....+.+|. ++.+.+|+|.       ++++|++++.|    
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~---~~~~~~~gH~~~V~~l~f~p~-------~~~~l~s~s~D----  186 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK---PTFIKGIGAGGSITGLKFNPL-------NTNQFYASSME----  186 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---CEEECCCSSSCCCCEEEECSS-------CTTEEEEECSS----
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---eeEEEccCCCCCEEEEEEeCC-------CCCEEEEEeCC----
Confidence            3666777 4 55566654   4788887544321   1233444552 3455666653       45678888775    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                        ++|++||++++.+......|...+.++.++|+|+        +.+|++|+.|++|++||++.+  .+..+.+|..   
T Consensus       187 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~---  251 (435)
T 4e54_B          187 --GTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS--------SRMVVTGDNVGNVILLNMDGK--ELWNLRMHKK---  251 (435)
T ss_dssp             --SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT--------TTEEEEECSSSBEEEEESSSC--BCCCSBCCSS---
T ss_pred             --CEEEEeeccCCceeEEeccCCCCccEEEEEECCC--------CCEEEEEeCCCcEeeeccCcc--eeEEEecccc---
Confidence              7999999987655444444444433455699998        679999999999999999753  2456655544   


Q ss_pred             ccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccc--ccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAK--TAFPGLGSPITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~ak--t~L~GH~d~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                                  .+.+++++|++  .||+||.||+|+|||+.+.+...  ....+|..+|++|+|||||++|++ +.|++
T Consensus       252 ------------~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          252 ------------KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             ------------CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             ------------eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence                        36789999987  58899999999999987653211  234689999999999999999999 99999


Q ss_pred             EEEEEcccccCCCCeeeeecCCC
Q 047036          486 LILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      |+|||+.    .+.+...+.+|.
T Consensus       320 i~iwd~~----~~~~~~~~~~~~  338 (435)
T 4e54_B          320 IRVYSAS----QWDCPLGLIPHP  338 (435)
T ss_dssp             EEEEESS----SSSSEEEECCCC
T ss_pred             EEEEECC----CCccceEEeccc
Confidence            9999986    566666665554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=1.9e-23  Score=207.64  Aligned_cols=267  Identities=12%  Similarity=0.124  Sum_probs=183.2

Q ss_pred             CCcEEEeee-CC-CeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          255 GVQSLTLGA-LD-NSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       255 ~~~~LavG~-~D-~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      .+.+.++++ ++ +.+++.|   .+|.||...............+.+|.       .+...+.+++++++|++++.|   
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-------~~V~~~~~s~dg~~l~s~~~d---  107 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-------HFVSDVVISSDGQFALSGSWD---  107 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-------SCEEEEEECTTSSEEEEEETT---
T ss_pred             cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-------CCEEEEEECCCCCEEEEEccc---
Confidence            345778888 66 5788765   57999997554322111233455552       233344445566777777775   


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                         ++|++|+...+........|...+  ....++|+        +..+++|+.|+.+++||++........+.+|.   
T Consensus       108 ---~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~---  171 (340)
T 4aow_A          108 ---GTLRLWDLTTGTTTRRFVGHTKDV--LSVAFSSD--------NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS---  171 (340)
T ss_dssp             ---SEEEEEETTTTEEEEEEECCSSCE--EEEEECTT--------SSCEEEEETTSCEEEECTTSCEEEEECSSSCS---
T ss_pred             ---ccceEEeecccceeeeecCCCCce--eEEEEeec--------CccceeecCCCeEEEEEeCCCceEEEEecccc---
Confidence               799999999999999999888865  45578887        57899999999999999986544333333333   


Q ss_pred             cccccccccccCcceEEEEECCCC---eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG---SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG---~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                                  ..+.++++++++   .+|+|+.|++|++||+.+.+ ....+.+|..+|++|+|+|||++|++ +.|++
T Consensus       172 ------------~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          172 ------------EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             ------------SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             ------------CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence                        235677787664   58999999999999998864 77889999999999999999999999 99999


Q ss_pred             EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeC
Q 047036          486 LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF  565 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl  565 (634)
                      |+|||+.    .++.+..+.++..                 .  ..+.|.|.           ...++++.|+.|.+||+
T Consensus       239 i~iwd~~----~~~~~~~~~~~~~-----------------v--~~~~~~~~-----------~~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          239 AMLWDLN----EGKHLYTLDGGDI-----------------I--NALCFSPN-----------RYWLCAATGPSIKIWDL  284 (340)
T ss_dssp             EEEEETT----TTEEEEEEECSSC-----------------E--EEEEECSS-----------SSEEEEEETTEEEEEET
T ss_pred             EEEEEec----cCceeeeecCCce-----------------E--EeeecCCC-----------CceeeccCCCEEEEEEC
Confidence            9999986    4555544443321                 0  12333332           25778889999999998


Q ss_pred             hhhhc-ccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          566 QQVKN-SAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       566 ~~v~~-~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      +.-.. ..+.        ..+.......+...|..+.|
T Consensus       285 ~~~~~~~~~~--------~~~~~~~~~~h~~~v~~l~~  314 (340)
T 4aow_A          285 EGKIIVDELK--------QEVISTSSKAEPPQCTSLAW  314 (340)
T ss_dssp             TTTEEEEEEC--------CC-------CCCCCEEEEEE
T ss_pred             CCCeEEEecc--------ccceeeeccCCCCCEEEEEE
Confidence            73211 0000        01112345567788888777

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=3.6e-25  Score=225.31  Aligned_cols=234  Identities=7%  Similarity=0.006  Sum_probs=158.3

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      .+.++.+ +|+.+++.|   ..|.||.....+..   ....+.+|.       .+...+.+++++++|++++.|      
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~h~-------~~v~~~~~s~~~~~l~s~s~d------   76 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK---HARTFSDHD-------KIVTCVDWAPKSNRIVTCSQD------   76 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE---ECCCBCCCS-------SCEEEEEECTTTCCEEEEETT------
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceE---EEEEEecCC-------ceEEEEEEeCCCCEEEEEeCC------
Confidence            4566677 788877765   47889987654211   112233442       233344445556677777765      


Q ss_pred             CcEEEEeCCCCc---EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEeccc-CC
Q 047036          333 PGVQQLDIETGK---IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVK-GD  406 (634)
Q Consensus       333 ~TIrlWDleTGK---~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~g-h~  406 (634)
                      ++|++||+.+++   .+..+.+|...|  ..++|+|+        +..+++|+.|++|++||++.+..  +++.+.+ |.
T Consensus        77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~  146 (377)
T 3dwl_C           77 RNAYVYEKRPDGTWKQTLVLLRLNRAA--TFVRWSPN--------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR  146 (377)
T ss_dssp             SSEEEC------CCCCEEECCCCSSCE--EEEECCTT--------SSCCEEEESSSCEEECCC-----CCCCEEECSSCC
T ss_pred             CeEEEEEcCCCCceeeeeEecccCCce--EEEEECCC--------CCEEEEEecCCeEEEEEECCcccceeeeEeecccC
Confidence            699999999988   788899999976  46699998        67899999999999999997642  2345543 33


Q ss_pred             CCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc------------------ccccccccccCCCCCeE
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT------------------SMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~------------------t~r~akt~L~GH~d~It  467 (634)
                                     ..+.+++++|+| +||+|+.||+|+|||+.                  .+ .....+ +|..+|+
T Consensus       147 ---------------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~  209 (377)
T 3dwl_C          147 ---------------STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN-TVCAEY-PSGGWVH  209 (377)
T ss_dssp             ---------------SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE-EEEECC-CCSSSEE
T ss_pred             ---------------CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh-hhhhcc-cCCceEE
Confidence                           346899999998 79999999999999974                  22 244556 9999999


Q ss_pred             EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCe----eeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036          468 HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKT----KTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV  542 (634)
Q Consensus       468 sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~----~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~  542 (634)
                      +|+|+|||++|++ +.|++|+|||+.    .+++    +..+.+|...                  ...+.|+|.     
T Consensus       210 ~~~~sp~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~------------------v~~~~~s~~-----  262 (377)
T 3dwl_C          210 AVGFSPSGNALAYAGHDSSVTIAYPS----APEQPPRALITVKLSQLP------------------LRSLLWANE-----  262 (377)
T ss_dssp             EEEECTTSSCEEEEETTTEEC-CEEC----STTSCEEECCCEECSSSC------------------EEEEEEEET-----
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECC----CCCCcceeeEeecCCCCc------------------eEEEEEcCC-----
Confidence            9999999999999 899999999986    3443    3444444320                  012444443     


Q ss_pred             ccCCCCceEEEEEcCCeEEEEeCh
Q 047036          543 TENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       543 t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                         |   +.|+++.++.+++|+..
T Consensus       263 ---~---~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          263 ---S---AIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             ---T---EEEEEESSSSEEEECCC
T ss_pred             ---C---CEEEEEcCCcEEEEEeC
Confidence               3   67888777778888875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=6.8e-25  Score=222.50  Aligned_cols=222  Identities=11%  Similarity=0.048  Sum_probs=156.7

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM  392 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~  392 (634)
                      .++++|++++.|      ++|++||+.+|+  ++.+|++|.+.|  ..++|+|+..      +.+|+||+.|++|++||+
T Consensus        23 ~~g~~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH~~~V--~~v~~~~~~~------~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A           23 YYGTRLATCSSD------RSVKIFDVRNGGQILIADLRGHEGPV--WQVAWAHPMY------GNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             GGGCEEEEEETT------TEEEEEEEETTEEEEEEEEECCSSCE--EEEEECCGGG------SSCEEEEETTSCEEEECC
T ss_pred             CCCCEEEEEeCC------CeEEEEEecCCCcEEEEEEcCCCccE--EEEEeCCCCC------CCEEEEEECCCEEEEEEC
Confidence            344567777765      799999999885  578899999986  4569986311      468999999999999999


Q ss_pred             CCCC-ceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEecccccc--ccccccCCCCCe
Q 047036          393 RDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQ--AKTAFPGLGSPI  466 (634)
Q Consensus       393 R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~--akt~L~GH~d~I  466 (634)
                      +++. ..+..+.+|...               +.+++++|+  | +||+||.||+|||||+.+...  ....+.+|..+|
T Consensus        89 ~~~~~~~~~~~~~h~~~---------------V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v  153 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSS---------------VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC  153 (316)
T ss_dssp             SSSCCCEEEEECCCSSC---------------CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred             CCCcceEEEEccCCCCc---------------eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence            9753 234556555543               468899987  6 799999999999999875321  246778999999


Q ss_pred             EEEEECCC-----------------CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc
Q 047036          467 THVDVTYD-----------------GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA  528 (634)
Q Consensus       467 tsVdfSpD-----------------Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~  528 (634)
                      .+|+|+|+                 |++||+ +.|++|+|||+... ...+++..|.+|.+..                 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V-----------------  215 (316)
T 3bg1_A          154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWV-----------------  215 (316)
T ss_dssp             CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCE-----------------
T ss_pred             ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCce-----------------
Confidence            99999998                 578998 89999999997410 0113455566665311                 


Q ss_pred             CCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          529 GTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       529 g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                       ..+.|+|..-       .....|++ |.|+.|.+|++.....+...            ...+..+...|..+.|-
T Consensus       216 -~~v~~sp~~~-------~~~~~las~s~D~~v~iw~~~~~~~~~~~------------~~~~~~~~~~v~~v~~s  271 (316)
T 3bg1_A          216 -RDVAWAPSIG-------LPTSTIASCSQDGRVFIWTCDDASSNTWS------------PKLLHKFNDVVWHVSWS  271 (316)
T ss_dssp             -EEEECCCCSS-------CSCCEEEEEETTCEEEEEECSSTTCCCCB------------CCEEEECSSCEEEEEEC
T ss_pred             -EEEEecCCCC-------CCCceEEEEcCCCeEEEEEccCccccchh------------hhhhhcCCCcEEEEEEc
Confidence             2345555421       11235554 78999999998753222111            12355677888888883

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=3.7e-24  Score=222.50  Aligned_cols=232  Identities=13%  Similarity=0.152  Sum_probs=150.8

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      ++++++|++++.|      ++|++||+.+|+.+..+++|...|.  .++|+|+        ++.+++|+.|++|++||+.
T Consensus        75 sp~~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~h~~~v~--~~~~s~~--------g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           75 TPEKNWIVSASQD------GRLIVWNALTSQKTHAIKLHCPWVM--ECAFAPN--------GQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             CTTSSCEEEEETT------SEEEEEETTTTEEEEEEECCCTTCC--CCEECTT--------SSEEEECCSSSCCEEEECC
T ss_pred             cCCCCEEEEEeCC------CeEEEEECCCCccceEEecCCCCEE--EEEECCC--------CCEEEEeeCCCcEEEEECC
Confidence            3445667777775      7999999999999999999999873  4599998        4556666666666666654


Q ss_pred             CCC------ceEEecccCCCCc----------------------cccc--cccc---------cccCcceEEEEECC-CC
Q 047036          394 DRS------GIVQNMVKGDSPV----------------------LHWT--QGHQ---------FSRGTNFQCFASTG-DG  433 (634)
Q Consensus       394 ~~~------~~Vq~l~gh~s~V----------------------~~~~--~g~~---------y~~~~~fssva~s~-dG  433 (634)
                      ...      .+...+.+|...|                      ..|.  .+..         ..+...+.++++++ ++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence            210      0112223332211                      1111  0000         01234567888865 66


Q ss_pred             -eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCC
Q 047036          434 -SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNK  511 (634)
Q Consensus       434 -~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~  511 (634)
                       .||+||.||+|||||+.........+.+|..+|++|+|+|||++|++ +.|++|+|||++    +|+++..|..+....
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR----TGHQLQVYNREPDRN  294 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT----TTEEEEEECCCCSSS
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC----CCcEEEEeccccccc
Confidence             79999999999999987433467789999999999999999999999 899999999986    677777776554211


Q ss_pred             CCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEE-
Q 047036          512 IPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKI-  590 (634)
Q Consensus       512 ~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i-  590 (634)
                                  +.+.    ...+...|++.   |  ...++++.++.|.+||+..   +...             +.+ 
T Consensus       295 ------------~~~~----~~v~~~~~s~~---g--~~l~~g~~dg~i~vwd~~~---~~~~-------------~~~~  337 (380)
T 3iz6_a          295 ------------DNEL----PIVTSVAFSIS---G--RLLFAGYSNGDCYVWDTLL---AEMV-------------LNLG  337 (380)
T ss_dssp             ------------CCSS----CSCSEEEECSS---S--SEEEEECTTSCEEEEETTT---CCEE-------------EEEC
T ss_pred             ------------cccc----CceEEEEECCC---C--CEEEEEECCCCEEEEECCC---CceE-------------EEEe
Confidence                        0000    01122334431   3  2344446799999999752   2211             223 


Q ss_pred             ---eccCCCeeeecc
Q 047036          591 ---VLKDESIVESRF  602 (634)
Q Consensus       591 ---~~~~~~i~~~~f  602 (634)
                         ..|...|.++.|
T Consensus       338 ~~~~~h~~~v~~l~~  352 (380)
T 3iz6_a          338 TLQNSHEGRISCLGL  352 (380)
T ss_dssp             CSCSSCCCCCCEEEE
T ss_pred             cccCCCCCceEEEEE
Confidence               457777887777

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=8.6e-25  Score=221.75  Aligned_cols=198  Identities=9%  Similarity=-0.021  Sum_probs=144.8

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      .+.++.+ +|+.+++.|   .+|.||....++.   .....|.+|. ++.+++|+|.      .++++|++++.|     
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~------~~~~~l~s~s~D-----   80 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHP------MYGNILASCSYD-----   80 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCG------GGSSCEEEEETT-----
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCC------CCCCEEEEEECC-----
Confidence            4677777 788887765   4788898654321   1233466663 2344555432      135677888775     


Q ss_pred             CCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce--EEecccCCC
Q 047036          332 APGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI--VQNMVKGDS  407 (634)
Q Consensus       332 ~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~--Vq~l~gh~s  407 (634)
                       ++|++||+++|  +.+.++.+|...|.  .++|+|+..      +.+|++|+.|++|++||++.+...  ...+.+|..
T Consensus        81 -~~v~iWd~~~~~~~~~~~~~~h~~~V~--~v~~~p~~~------g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           81 -RKVIIWREENGTWEKSHEHAGHDSSVN--SVCWAPHDY------GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             -SCEEEECCSSSCCCEEEEECCCSSCCC--EEEECCTTT------CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             -CEEEEEECCCCcceEEEEccCCCCceE--EEEECCCCC------CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence             79999999998  47888999999874  569999732      468999999999999999875321  233444443


Q ss_pred             CccccccccccccCcceEEEEECCC-----------------C-eEEEEECCCcEEEEeccccc--cccccccCCCCCeE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGD-----------------G-SIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSPIT  467 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~d-----------------G-~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~It  467 (634)
                      .               +.+++++|+                 + +||+||.||+|||||..+..  .....|.+|.++|+
T Consensus       152 ~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~  216 (316)
T 3bg1_A          152 G---------------CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR  216 (316)
T ss_dssp             C---------------BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE
T ss_pred             C---------------cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE
Confidence            3               345556654                 3 79999999999999986431  24567899999999


Q ss_pred             EEEECCCC----CEEEE-EcCCcEEEEEcc
Q 047036          468 HVDVTYDG----KWILG-TTDTYLILICTL  492 (634)
Q Consensus       468 sVdfSpDG----k~LlS-S~D~tIrLWD~~  492 (634)
                      +|+|+|+|    ++||+ +.|++|+|||+.
T Consensus       217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             EEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             EEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence            99999997    88999 999999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=1.8e-23  Score=213.66  Aligned_cols=184  Identities=14%  Similarity=0.127  Sum_probs=143.2

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCC-------CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIET-------GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleT-------GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      ++++|++++.|      ++|++||+.+       |+.+..+.+|...|  ..++|+|+        +.++++|+.|++|+
T Consensus        38 d~~~l~sgs~D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V--~~~~~~~~--------~~~l~s~s~D~~v~  101 (343)
T 2xzm_R           38 DSPVLISGSRD------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFV--SDLALSQE--------NCFAISSSWDKTLR  101 (343)
T ss_dssp             CCCEEEEEETT------SCEEEEEECSSCCSSBSEEEEEEECCCSSCE--EEEEECSS--------TTEEEEEETTSEEE
T ss_pred             CCCEEEEEcCC------CEEEEEECCcCCcccccccccchhccCCCce--EEEEECCC--------CCEEEEEcCCCcEE
Confidence            66778888876      7999999974       56788999999986  45699998        67999999999999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc--ccccCCCCC
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK--TAFPGLGSP  465 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak--t~L~GH~d~  465 (634)
                      +||++++.. +..+.+|..+               +.+++++|+| +||+||.||+|||||+.+. ...  ....+|..+
T Consensus       102 lwd~~~~~~-~~~~~~h~~~---------------v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~  164 (343)
T 2xzm_R          102 LWDLRTGTT-YKRFVGHQSE---------------VYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDW  164 (343)
T ss_dssp             EEETTSSCE-EEEEECCCSC---------------EEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSC
T ss_pred             EEECCCCcE-EEEEcCCCCc---------------EEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCce
Confidence            999998654 5777766543               5789999998 7999999999999998742 111  223489999


Q ss_pred             eEEEEECCCC----------CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccc
Q 047036          466 ITHVDVTYDG----------KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKI  534 (634)
Q Consensus       466 ItsVdfSpDG----------k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~F  534 (634)
                      |.+|+|+|++          .+|++ +.|++|+|||.     .++....|.+|.+..                  ..+.|
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v------------------~~~~~  221 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNV------------------NHLSI  221 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCE------------------EEEEE
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccc------------------eEEEE
Confidence            9999999998          78998 99999999994     355556666665310                  12444


Q ss_pred             ccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          535 HGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       535 t~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      +|.        |   ++|++ +.|+.|.+||+.
T Consensus       222 s~~--------g---~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          222 SPN--------G---KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CTT--------S---SEEEEEETTCEEEEEESS
T ss_pred             CCC--------C---CEEEEEcCCCeEEEEECC
Confidence            443        3   35554 779999999984

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=1.1e-23  Score=211.97  Aligned_cols=235  Identities=7%  Similarity=-0.000  Sum_probs=171.7

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      ..++.+ +|+.+++.|   ..|.||........   ....+.+|.       .+...+.+++++++|++++.|      +
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~h~-------~~v~~~~~~~~~~~l~~~~~d------g   74 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---QVHELKEHN-------GQVTGVDWAPDSNRIVTCGTD------R   74 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---EEEEEECCS-------SCEEEEEEETTTTEEEEEETT------S
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---eeeeecCCC-------CcccEEEEeCCCCEEEEEcCC------C
Confidence            555666 677777655   57888886543211   233444542       233445555666778877765      6


Q ss_pred             cEEEEeCCCCcEEEEE--eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEec-ccCCCC
Q 047036          334 GVQQLDIETGKIVTEW--KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNM-VKGDSP  408 (634)
Q Consensus       334 TIrlWDleTGK~V~~l--kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l-~gh~s~  408 (634)
                      +|++||+++++....+  .+|...|  ..++|+|+        +..+++|+.|++|++||++.+..  ....+ .+|   
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---  141 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILRINRAA--RCVRWAPN--------EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI---  141 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCE--EEEEECTT--------SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC---
T ss_pred             eEEEEECCCCeeeeeEEeecCCCce--eEEEECCC--------CCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc---
Confidence            8999999999876654  6788765  56699998        67999999999999999997653  11222 222   


Q ss_pred             ccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc------------------ccccccccccCCCCCeEEE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT------------------SMRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~------------------t~r~akt~L~GH~d~ItsV  469 (634)
                                  ...+.+++++|++ +||+|+.||.|+|||+.                  .+ .....+.+|..+|++|
T Consensus       142 ------------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~  208 (372)
T 1k8k_C          142 ------------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGV  208 (372)
T ss_dssp             ------------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEE
T ss_pred             ------------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh-hheEecCCCCCeEEEE
Confidence                        3357899999998 79999999999999953                  33 3566788999999999


Q ss_pred             EECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCC
Q 047036          470 DVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQ  548 (634)
Q Consensus       470 dfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~  548 (634)
                      +|+|+|++|++ +.|++|++||+.    +++.+..|.+|....                  ..+.|+|.        +  
T Consensus       209 ~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v------------------~~~~~~~~--------~--  256 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDSTVCLADAD----KKMAVATLASETLPL------------------LAVTFITE--------S--  256 (372)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGG----GTTEEEEEECSSCCE------------------EEEEEEET--------T--
T ss_pred             EECCCCCEEEEEeCCCEEEEEECC----CCceeEEEccCCCCe------------------EEEEEecC--------C--
Confidence            99999999999 899999999986    577777776664210                  12344443        3  


Q ss_pred             ceEEEEEcCCeEEEEeChh
Q 047036          549 ERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       549 E~~IvtStg~~viiWdl~~  567 (634)
                       ..|+++.++.|.+|++..
T Consensus       257 -~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          257 -SLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             -EEEEEETTSSCEEEEEET
T ss_pred             -CEEEEEeCCeEEEEEccC
Confidence             578888999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=4.4e-24  Score=222.32  Aligned_cols=192  Identities=13%  Similarity=0.054  Sum_probs=142.2

Q ss_pred             eeEEeCCcceEEe-cCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          310 ALLMRGETNMMLM-SPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       310 ~mL~~~D~~mlls-ss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      .+.+++|+++|+. +++.     |++||+||+++++++.++. |...|  ..++|+||        |.++++|+++ +++
T Consensus       138 ~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~~-~~~~V--~~v~fspd--------g~~l~s~s~~-~~~  200 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEIE-TRGEV--KDLHFSTD--------GKVVAYITGS-SLE  200 (365)
T ss_dssp             EEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEEE-CSSCC--CEEEECTT--------SSEEEEECSS-CEE
T ss_pred             EEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEeC-CCCce--EEEEEccC--------CceEEeccce-eEE
Confidence            3455667776653 4433     3899999999999999997 55555  45699999        6789998855 567


Q ss_pred             EEEcCCCCceEEe-cccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCC----cEEEEecccccc---ccccc
Q 047036          389 QWDMRDRSGIVQN-MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG----KIRLYSKTSMRQ---AKTAF  459 (634)
Q Consensus       389 lWD~R~~~~~Vq~-l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DG----tIRLWD~~t~r~---akt~L  459 (634)
                      +|+..++.++... +.+               +...+.+++|+|+| +|++++.|+    +|++||......   ....+
T Consensus       201 ~~~~~~~~~~~~~~~~~---------------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~  265 (365)
T 4h5i_A          201 VISTVTGSCIARKTDFD---------------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV  265 (365)
T ss_dssp             EEETTTCCEEEEECCCC---------------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEeccCcceeeeecCC---------------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee
Confidence            7777766543222 211               23357899999999 799999998    689999765321   12457


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee-cCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF-SGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF-~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      .+|..+|++|+|||||++||+ +.|++|+|||+.    +|+++..| .+|.+..                  ..+.|+|+
T Consensus       266 ~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~----~~~~~~~~~~gH~~~V------------------~~v~fSpd  323 (365)
T 4h5i_A          266 TNRFKGITSMDVDMKGELAVLASNDNSIALVKLK----DLSMSKIFKQAHSFAI------------------TEVTISPD  323 (365)
T ss_dssp             ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT----TTEEEEEETTSSSSCE------------------EEEEECTT
T ss_pred             cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC----CCcEEEEecCcccCCE------------------EEEEECCC
Confidence            899999999999999999999 999999999986    68877765 5776411                  23566665


Q ss_pred             cccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          538 HFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                              |   ++|++ |.|+.|.||++.
T Consensus       324 --------g---~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          324 --------S---TYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             --------S---CEEEEEETTSEEEEEECC
T ss_pred             --------C---CEEEEEeCCCeEEEEEcC
Confidence                    4   46655 789999999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=5.5e-24  Score=218.38  Aligned_cols=193  Identities=10%  Similarity=0.077  Sum_probs=145.5

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE---EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE---WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~---lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      +.+++++++|++++.|      ++|++||+++++.+..   ..+|...|  ..++|+|+        +.+|++|+.|++|
T Consensus        22 l~~sp~g~~las~~~D------~~i~iw~~~~~~~~~~~~~~~~h~~~v--~~~~~sp~--------g~~l~s~s~D~~v   85 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGD------RRIRIWGTEGDSWICKSVLSEGHQRTV--RKVAWSPC--------GNYLASASFDATT   85 (345)
T ss_dssp             EEECTTSSCEEEEETT------SCEEEEEEETTEEEEEEEECSSCSSCE--EEEEECTT--------SSEEEEEETTSCE
T ss_pred             EEECCCCCEEEEEcCC------CeEEEEEcCCCcceeeeeeccccCCcE--EEEEECCC--------CCEEEEEECCCcE
Confidence            3344455667777765      7999999999875433   36899986  46699998        6799999999999


Q ss_pred             EEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--cccccccCCC
Q 047036          388 CQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--QAKTAFPGLG  463 (634)
Q Consensus       388 klWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~akt~L~GH~  463 (634)
                      ++||++.+. ..+..+.+|..+               +.+++++|+| +||+||.||+|+|||+.+..  .....+.+|.
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~---------------v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~  150 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENE---------------VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT  150 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred             EEEEccCCCeEEEEEccCCCCC---------------ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence            999998754 345667666543               5789999999 89999999999999987542  2345788999


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCC--eeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGK--TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFS  540 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~--~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs  540 (634)
                      .+|++|+|+|+|++|++ +.|++|+|||+.    .++  +...+.+|.+..                  ..+.|+|.   
T Consensus       151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v------------------~~l~~sp~---  205 (345)
T 3fm0_A          151 QDVKHVVWHPSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTV------------------WSLAFDPS---  205 (345)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCE------------------EEEEECTT---
T ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCce------------------EEEEECCC---
Confidence            99999999999999999 999999999975    232  344566665311                  13455544   


Q ss_pred             ccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          541 WVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       541 ~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                           |  ...++++.|+.|.||++.
T Consensus       206 -----g--~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          206 -----G--QRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             -----S--SEEEEEETTSCEEEEEEE
T ss_pred             -----C--CEEEEEeCCCeEEEeccc
Confidence                 3  234455789999999963

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=4.9e-25  Score=224.29  Aligned_cols=239  Identities=10%  Similarity=0.041  Sum_probs=153.5

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      ...+|+|+        +++|++++.|      ++|++||+.++  +++.++.+|...|  ..++|+|+        +++|
T Consensus        15 ~~~~~s~~--------g~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~s~~--------~~~l   70 (377)
T 3dwl_C           15 YEHAFNSQ--------RTEFVTTTAT------NQVELYEQDGNGWKHARTFSDHDKIV--TCVDWAPK--------SNRI   70 (377)
T ss_dssp             SCCEECSS--------SSEEECCCSS------SCBCEEEEETTEEEECCCBCCCSSCE--EEEEECTT--------TCCE
T ss_pred             EEEEECCC--------CCEEEEecCC------CEEEEEEccCCceEEEEEEecCCceE--EEEEEeCC--------CCEE
Confidence            55556655        4566666654      79999999999  8999999999986  46699998        6789


Q ss_pred             EEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc-
Q 047036          379 FLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ-  454 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~-  454 (634)
                      ++|+.|++|++||++.+.  ..+..+.+|.               ..+.+++++|+| +||+|+.||+|+|||+.+.+. 
T Consensus        71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLN---------------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             EEEETTSSEEEC------CCCCEEECCCCS---------------SCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             EEEeCCCeEEEEEcCCCCceeeeeEecccC---------------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            999999999999998764  1234444443               346899999998 799999999999999887531 


Q ss_pred             -ccccccC-CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          455 -AKTAFPG-LGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       455 -akt~L~G-H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                       ....+.+ |..+|++|+|+|||++|++ +.|++|+|||+...........   ...+...+...+++.. .|... ...
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~-v~~  210 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA---SVWGSRLPFNTVCAEY-PSGGW-VHA  210 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS---CSSCSCCCEEEEEECC-CCSSS-EEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc---cccccccchhhhhhcc-cCCce-EEE
Confidence             3456777 9999999999999999999 8999999999863221111100   0011111112222222 22110 012


Q ss_pred             cccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccC
Q 047036          532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHD  605 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d  605 (634)
                      +.|+|.        |  ...++++.|+.|.+||+..-   ....         ...+.+..+...|..+.|..+
T Consensus       211 ~~~sp~--------~--~~l~~~~~d~~i~iwd~~~~---~~~~---------~~~~~~~~~~~~v~~~~~s~~  262 (377)
T 3dwl_C          211 VGFSPS--------G--NALAYAGHDSSVTIAYPSAP---EQPP---------RALITVKLSQLPLRSLLWANE  262 (377)
T ss_dssp             EEECTT--------S--SCEEEEETTTEEC-CEECST---TSCE---------EECCCEECSSSCEEEEEEEET
T ss_pred             EEECCC--------C--CEEEEEeCCCcEEEEECCCC---CCcc---------eeeEeecCCCCceEEEEEcCC
Confidence            334433        3  24455578999999998742   2100         012457778888888888444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=2.5e-23  Score=215.60  Aligned_cols=267  Identities=11%  Similarity=0.088  Sum_probs=165.5

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCce-------ecceeEEEecCCCCC----cccc-cCcceeeEEeCCc--c
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGI-------HNKGVSVRFDGGSSK----IGSN-STPKKALLMRGET--N  318 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl-------~~~~~~~~~~~~~~~----~g~~-fsP~~~mL~~~D~--~  318 (634)
                      .+.++.+ +|+.+++.|   ..|.||.......       .+. ....+.+|.+.    .... -.+...+.+.+++  .
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~  108 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA  108 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-EecccccccccccccccccccCceEEEEEcCCCCcc
Confidence            4677777 777777765   4788888654320       110 13345555200    0000 0122333344444  5


Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEE---------------------------------------EE-EeccCCCcce
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIV---------------------------------------TE-WKFEKDGTDI  358 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V---------------------------------------~~-lkgH~~~V~I  358 (634)
                      +|++++.|      ++|++||+.+++..                                       +. +.+|...|  
T Consensus       109 ~l~s~s~d------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--  180 (447)
T 3dw8_B          109 QFLLSTND------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI--  180 (447)
T ss_dssp             EEEEEECS------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC--
T ss_pred             eEEEeCCC------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce--
Confidence            67777665      79999999886653                                       23 37899987  


Q ss_pred             eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEE
Q 047036          359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIV  436 (634)
Q Consensus       359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IA  436 (634)
                      ..++|+|+        +..+++| .|++|++||++..+..++.+.....        ....+...+.+++++|+|  .||
T Consensus       181 ~~~~~~~~--------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          181 NSISINSD--------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPA--------NMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             CEEEECTT--------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS--------SGGGCCCCEEEEEECSSCTTEEE
T ss_pred             EEEEEcCC--------CCEEEEe-CCCeEEEEECCCCCceeeeeecccc--------cccccCcceEEEEECCCCCcEEE
Confidence            45699998        6789999 8999999999854433442210000        000123457899999987  699


Q ss_pred             EEECCCcEEEEeccccccc----cccccCCCC------------CeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCe
Q 047036          437 VGSLDGKIRLYSKTSMRQA----KTAFPGLGS------------PITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKT  500 (634)
Q Consensus       437 SGS~DGtIRLWD~~t~r~a----kt~L~GH~d------------~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~  500 (634)
                      +|+.||+|+|||+.+++ .    ...+.+|.+            +|++|+|+|||++|+++.+++|+|||+..   .++.
T Consensus       244 s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~---~~~~  319 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASA-LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM---ENRP  319 (447)
T ss_dssp             EEETTSCEEEEETTTCS-SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTC---CSSC
T ss_pred             EEeCCCeEEEEECcCCc-cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCC---Cccc
Confidence            99999999999998754 3    467888886            99999999999999994449999999862   3777


Q ss_pred             eeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          501 KTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       501 ~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      +..|.+|..-.   .++..+...+...     ......|++.   |   ..|++ +.|+.|.+||+..
T Consensus       320 ~~~~~~~~~~~---~~l~~~~~~~~i~-----~~~~~~~s~~---~---~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          320 VETYQVHEYLR---SKLCSLYENDCIF-----DKFECCWNGS---D---SVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             SCCEESCGGGT---TTHHHHHHTSGGG-----CCCCEEECTT---S---SEEEEECSTTEEEEEETTT
T ss_pred             cceeecccccc---ccccccccccccc-----cceEEEECCC---C---CEEEEeccCCEEEEEEcCC
Confidence            77787775311   0000000000000     0112345431   3   34544 7799999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.3e-24  Score=240.43  Aligned_cols=243  Identities=9%  Similarity=-0.005  Sum_probs=167.5

Q ss_pred             CcEEEeee-C--------CCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEe
Q 047036          256 VQSLTLGA-L--------DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLM  322 (634)
Q Consensus       256 ~~~LavG~-~--------D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mlls  322 (634)
                      .+.||+|. .        +.++++.|   .+|.+|....+.+... ....+.+| ..+.+++|+|...  .+++..+|++
T Consensus       154 ~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~~~~V~~v~wsp~~~--~~~~~~~LAs  230 (524)
T 2j04_B          154 IQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHSFGEVWDLKWHEGCH--APHLVGCLSF  230 (524)
T ss_dssp             EEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEECCCSEEEEEECSSCC--CSSSSCEEEE
T ss_pred             CeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEecCCcEEEEEECCCCC--CCCCCceEEE
Confidence            36777776 2        23345544   4788888655432211 11123333 2346677888631  1234567777


Q ss_pred             cCCCCCCCCCCcEEEEeCCCCcE-----------EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          323 SPLKDGKPQAPGVQQLDIETGKI-----------VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       323 ss~d~~~~~~~TIrlWDleTGK~-----------V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ++.|      ++|++||+.+++.           +.++.+|...|  ..++|+|+         ..|++|+.|++|++||
T Consensus       231 ~s~D------gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v--~sv~~s~~---------~~lasgs~DgtV~lWD  293 (524)
T 2j04_B          231 VSQE------GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI--TTFDFLSP---------TTVVCGFKNGFVAEFD  293 (524)
T ss_dssp             EETT------SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE--EEEEESSS---------SEEEEEETTSEEEEEE
T ss_pred             EecC------CeEEEEEcCCCccccccceeecCceEEEEcCCCCE--EEEEecCC---------CeEEEEeCCCEEEEEE
Confidence            7765      7999999988752           24789999876  46699875         4899999999999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEE--EECCCC--eEEEEECCCcEEEEeccccccccccccCCCC--C
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCF--ASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS--P  465 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssv--a~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d--~  465 (634)
                      ++++.+++..+.+|..+               +.++  +++++|  .|||||.||+|||||+++++ +..++.+|..  .
T Consensus       294 ~~~~~~~~~~~~~H~~~---------------V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~  357 (524)
T 2j04_B          294 LTDPEVPSFYDQVHDSY---------------ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSN  357 (524)
T ss_dssp             TTBCSSCSEEEECSSSC---------------EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCS
T ss_pred             CCCCCCceEEeeccccc---------------EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCc
Confidence            99765545566666654               4566  578876  68999999999999998764 5556777764  5


Q ss_pred             eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036          466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE  544 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~  544 (634)
                      |++|+|||||+.||+ +.|++|+|||++    .+.++..|.+|.+..                  ..+.|+|.       
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V------------------~sva~Sp~-------  408 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTI------------------TAIGVSRL-------  408 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCE------------------EEEECCSS-------
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCce------------------EEEEeCCC-------
Confidence            899999999999998 789999999986    577777788876421                  23555554       


Q ss_pred             CCCCceEEEEEcCCeEEEEeCh
Q 047036          545 NGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       545 ~g~~E~~IvtStg~~viiWdl~  566 (634)
                       |  ...+++|.|+.|.+||+.
T Consensus       409 -g--~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          409 -H--PMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             -C--CBCEEEETTTEEECCBSC
T ss_pred             -C--CeEEEEECCCEEEEEech
Confidence             3  234455789999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=7.5e-23  Score=204.31  Aligned_cols=273  Identities=10%  Similarity=0.048  Sum_probs=177.8

Q ss_pred             CcEEEeee-CC-----CeEEEec--CeeeEEEccCCceecceeEEEecCC------CCCcccccCcceeeEEeCCcceEE
Q 047036          256 VQSLTLGA-LD-----NSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGG------SSKIGSNSTPKKALLMRGETNMML  321 (634)
Q Consensus       256 ~~~LavG~-~D-----~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~------~~~~g~~fsP~~~mL~~~D~~mll  321 (634)
                      ....++.+ ++     ..+++.+  ..|.||....++.     ...+..+      ..+...+|+|+.    ..++.+|+
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~l~   89 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----IRLLQSYVDADADENFYTCAWTYDS----NTSHPLLA   89 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----EEEEEEEECSCTTCCEEEEEEEECT----TTCCEEEE
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----EEeeeeccccCCCCcEEEEEeccCC----CCCCCEEE
Confidence            34677777 42     2344432  5789998765431     1122211      112444455542    11245677


Q ss_pred             ecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEE
Q 047036          322 MSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQ  400 (634)
Q Consensus       322 sss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq  400 (634)
                      +++.|      ++|++||+.+++++..+.+|...|  ..++|+| +        +.++++|+.|++|++||++.+.. +.
T Consensus        90 ~~~~d------g~i~v~d~~~~~~~~~~~~~~~~i--~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~-~~  152 (366)
T 3k26_A           90 VAGSR------GIIRIINPITMQCIKHYVGHGNAI--NELKFHPRD--------PNLLLSVSKDHALRLWNIQTDTL-VA  152 (366)
T ss_dssp             EEETT------CEEEEECTTTCCEEEEEESCCSCE--EEEEECSSC--------TTEEEEEETTSCEEEEETTTTEE-EE
T ss_pred             EecCC------CEEEEEEchhceEeeeecCCCCcE--EEEEECCCC--------CCEEEEEeCCCeEEEEEeecCeE-EE
Confidence            77765      799999999999999999999976  4669999 6        67999999999999999998643 44


Q ss_pred             ec---ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc----------------
Q 047036          401 NM---VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP----------------  460 (634)
Q Consensus       401 ~l---~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~----------------  460 (634)
                      .+   .+|.               ..+.+++++|+| +|++|+.||.|++||+.+++ ....+.                
T Consensus       153 ~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~  216 (366)
T 3k26_A          153 IFGGVEGHR---------------DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR-MMNAIKESYDYNPNKTNRPFIS  216 (366)
T ss_dssp             EECSTTSCS---------------SCEEEEEECTTSSEEEEEETTSCEEEEESCSHH-HHHHHHHHHTCCGGGCSSCCCC
T ss_pred             Eeccccccc---------------CceeEEEECCCCCEEEEecCCCCEEEEECCCCc-cccccceeEEecCCCCcccccc
Confidence            54   2332               346899999998 89999999999999998753 333333                


Q ss_pred             ------------CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee-eeecCCCCCCCCCceeEeecCCCcc
Q 047036          461 ------------GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK-TGFSGRMGNKIPAPRLLKLTPLDSH  526 (634)
Q Consensus       461 ------------GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~-~gF~gh~~~~~p~pr~L~L~Pe~~~  526 (634)
                                  +|..+|++|+|+  |++|++ +.|++|++||+..    ++.. ..+..+    ....+.+...+.|..
T Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~  286 (366)
T 3k26_A          217 QKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGK----MEDDIDKIKPS----ESNVTILGRFDYSQC  286 (366)
T ss_dssp             EEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESS----TTCCGGGCCTT----CCCEEEEEEEECSSC
T ss_pred             eeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCC----ccccccccccC----CcchheeccccccCC
Confidence                        399999999999  789998 8899999999862    3221 111111    122233443333321


Q ss_pred             ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEecc--CCCeeeecc
Q 047036          527 LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLK--DESIVESRF  602 (634)
Q Consensus       527 ~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~--~~~i~~~~f  602 (634)
                      . ...+.|+|..         +.+.|++ +.++.|.+||+..-....            ...+.+..+  ...|..+.|
T Consensus       287 ~-v~~~~~s~~~---------~~~~l~~~~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          287 D-IWYMRFSMDF---------WQKMLALGNQVGKLYVWDLEVEDPHK------------AKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             C-SSCCCCEECT---------TSSEEEEECTTSCEEEEECCSSSGGG------------CEEEEECCTTCCSCEEEEEE
T ss_pred             c-EEEEEEcCCC---------CCcEEEEEecCCcEEEEECCCCCCcc------------ccceEEcccccCCceEEEEe
Confidence            1 1234444431         1245554 678999999997422111            123456666  688888887

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=1.2e-22  Score=209.28  Aligned_cols=270  Identities=10%  Similarity=0.039  Sum_probs=174.5

Q ss_pred             CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC
Q 047036          264 LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI  340 (634)
Q Consensus       264 ~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl  340 (634)
                      +|+.+++.|   ..|.||......     ....+.+|.       .+...+.+++++++|++++.|      ++|++||+
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~  168 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNFNL-----QREIDQAHV-------SEITKLKFFPSGEALISSSQD------MQLKIWSV  168 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTSCE-----EEEETTSSS-------SCEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred             cCCCEEEEEECCCCEEEEeCCCcc-----eeeeccccc-------CccEEEEECCCCCEEEEEeCC------CeEEEEeC
Confidence            555555543   367777654321     122233442       233344445556677777765      79999999


Q ss_pred             CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC---Cccccc--cc
Q 047036          341 ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS---PVLHWT--QG  415 (634)
Q Consensus       341 eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s---~V~~~~--~g  415 (634)
                      .+|++++++.+|...|  ..++|+|+        +..+++|+.|++|++||++++. .+..+..|..   .|....  .+
T Consensus       169 ~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~  237 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATV--TDIAIIDR--------GRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVG  237 (420)
T ss_dssp             TTCCCCEEEECCSSCE--EEEEEETT--------TTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEEC
T ss_pred             CCCcCceEEcCCCCcE--EEEEEcCC--------CCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecC
Confidence            9999999999999986  46699998        6799999999999999999865 4566654321   111000  00


Q ss_pred             c----ccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEE-EcCCcEEE
Q 047036          416 H----QFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILG-TTDTYLIL  488 (634)
Q Consensus       416 ~----~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlS-S~D~tIrL  488 (634)
                      .    .......+.+++++|+| +||+|+.||.|+|||+.+++.......+|..+|++|+|+|+|+ +|++ +.|++|+|
T Consensus       238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v  317 (420)
T 3vl1_A          238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ  317 (420)
T ss_dssp             CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence            0    00012344566778999 7999999999999999876534444567999999999999999 8988 89999999


Q ss_pred             EEcccccCCCC-eeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036          489 ICTLFSDKDGK-TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ  566 (634)
Q Consensus       489 WD~~~~~~~G~-~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~  566 (634)
                      ||+.    +++ .+..+.+|.+.                    .+.  ...|..    +   ..|++ +.|+.|.+|++.
T Consensus       318 wd~~----~~~~~~~~~~~~~~~--------------------~v~--~~~~~~----~---~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          318 WDLR----SPECPVGEFLINEGT--------------------PIN--NVYFAA----G---ALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             EETT----CTTSCSEEEEESTTS--------------------CEE--EEEEET----T---EEEEEETTTEEEEEEEEC
T ss_pred             EEcC----CCcCchhhhhccCCC--------------------Cce--EEEeCC----C---CEEEEecCCccEEEEecc
Confidence            9986    332 23444443210                    111  111211    2   35555 668999999987


Q ss_pred             hhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          567 QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       567 ~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      .-.+....       .....+..+..+...|.+..|
T Consensus       365 ~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~  393 (420)
T 3vl1_A          365 DPESERPA-------IEFETPTFLVSNDDAVSQFCY  393 (420)
T ss_dssp             CTTCCSCE-------ECTTSCEEECCSSCCCCEEEE
T ss_pred             CCCCCccc-------eeccCccEEccCCcceEEEEE
Confidence            52221100       000112346778888887777

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=1.2e-23  Score=216.57  Aligned_cols=212  Identities=11%  Similarity=0.056  Sum_probs=157.4

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +.+++++++|++++.|      ++|++||+.+++.+..+.+|.  + +.+..|+|+        +..+++|+.|++|++|
T Consensus        62 ~~~s~~g~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~--~-~~~~~~~~~--------~~~l~~~~~dg~i~iw  124 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLD------GHDFLFNTIIRDGSKMLKRAD--Y-TAVDTAKLQ--------MRRFILGTTEGDIKVL  124 (420)
T ss_dssp             CEEEEEETTEEEEEET------TEEEEEECCSEETTTTSCSCC--E-EEEEEECSS--------SCEEEEEETTSCEEEE
T ss_pred             eeeeecCCeEEEEEcC------CcEEEEEecccceeeEEecCC--c-eEEEEEecC--------CCEEEEEECCCCEEEE
Confidence            3344445666777665      699999999998888888883  2 356678888        6799999999999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEE
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsV  469 (634)
                      |++.+. +++.+.+|..               .+.+++++|+| +||+|+.||+|+|||+.+++ ....+.+|..+|++|
T Consensus       125 d~~~~~-~~~~~~~h~~---------------~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~  187 (420)
T 3vl1_A          125 DSNFNL-QREIDQAHVS---------------EITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDI  187 (420)
T ss_dssp             CTTSCE-EEEETTSSSS---------------CEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEE
T ss_pred             eCCCcc-eeeecccccC---------------ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEE
Confidence            998754 4556655544               36899999998 79999999999999998864 677889999999999


Q ss_pred             EECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc--CCCcccccccccccccCC
Q 047036          470 DVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA--GTDNKIHGGHFSWVTENG  546 (634)
Q Consensus       470 dfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~--g~~i~Ft~a~Fs~~t~~g  546 (634)
                      +|+|||++|++ +.|++|+|||+.    +++.+..|.+|.+.. .....+.+.|.+....  ......+...|++.   |
T Consensus       188 ~~~~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~  259 (420)
T 3vl1_A          188 AIIDRGRNVLSASLDGTIRLWECG----TGTTIHTFNRKENPH-DGVNSIALFVGTDRQLHEISTSKKNNLEFGTY---G  259 (420)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETT----TTEEEEEECBTTBTT-CCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT---T
T ss_pred             EEcCCCCEEEEEcCCCcEEEeECC----CCceeEEeecCCCCC-CCccEEEEecCCcceeeecccCcccceEEcCC---C
Confidence            99999999999 899999999986    688888888765422 2234555555432110  01112233445431   3


Q ss_pred             CCceEEE-EEcCCeEEEEeChh
Q 047036          547 KQERHLV-ATVGKFSVIWDFQQ  567 (634)
Q Consensus       547 ~~E~~Iv-tStg~~viiWdl~~  567 (634)
                         ..|+ ++.++.|.+||+..
T Consensus       260 ---~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          260 ---KYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             ---EEEEEEETTSCEEEEETTT
T ss_pred             ---CEEEEEcCCCeEEEEECCC
Confidence               4554 47799999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=6e-22  Score=195.54  Aligned_cols=255  Identities=12%  Similarity=0.149  Sum_probs=174.8

Q ss_pred             cEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      ...++.+ +|+.+++.|  ..|.||.....+...........+|.       .+...+.+++++++|++++.+      +
T Consensus        53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d------~  119 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRD-------NYIRSCKLLPDGCTLIVGGEA------S  119 (337)
T ss_dssp             CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTT-------SBEEEEEECTTSSEEEEEESS------S
T ss_pred             ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCC-------CcEEEEEEcCCCCEEEEEcCC------C
Confidence            4566666 777777754  58888987554321111111111221       233444455566777777665      6


Q ss_pred             cEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          334 GVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       334 TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      +|++||+.+++  .+..+.+|...|  ..++|+|+        +..+++|+.|++|++||++++. .+..+.+|..    
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i--~~~~~~~~--------~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~----  184 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPAC--YALAISPD--------SKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTD----  184 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTTTE-EEEEECCCSS----
T ss_pred             cEEEEECCCCCcceeeecccCCCce--EEEEECCC--------CCEEEEEeCCCcEEEEeCCCCc-eeeeeecccC----
Confidence            99999999988  778899999875  46699998        6799999999999999999764 4566654443    


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                                 .+.+++++|+| +|++|+.||.|++||+.+++ ....+ .|..+|.+++|+|+|++|++ +.|+.|++|
T Consensus       185 -----------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          185 -----------GASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             -----------CEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -----------ceEEEEECCCCCEEEEEecCCcEEEEECCCCc-eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence                       36789999998 89999999999999998764 44444 47889999999999999999 889999999


Q ss_pred             EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036          490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK  569 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~  569 (634)
                      |+.    .++ ...+.+|...                  ...+.|+|.        +  ...++++.++.|.+||+..  
T Consensus       252 ~~~----~~~-~~~~~~~~~~------------------v~~~~~~~~--------~--~~l~~~~~dg~i~~~~~~~--  296 (337)
T 1gxr_A          252 HVN----KPD-KYQLHLHESC------------------VLSLKFAYC--------G--KWFVSTGKDNLLNAWRTPY--  296 (337)
T ss_dssp             ETT----SSC-EEEECCCSSC------------------EEEEEECTT--------S--SEEEEEETTSEEEEEETTT--
T ss_pred             ECC----CCC-eEEEcCCccc------------------eeEEEECCC--------C--CEEEEecCCCcEEEEECCC--
Confidence            975    222 2223333210                  012344443        2  2344557799999999873  


Q ss_pred             cccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          570 NSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       570 ~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                       ++.              .....+...|..+.|
T Consensus       297 -~~~--------------~~~~~~~~~v~~~~~  314 (337)
T 1gxr_A          297 -GAS--------------IFQSKESSSVLSCDI  314 (337)
T ss_dssp             -CCE--------------EEEEECSSCEEEEEE
T ss_pred             -CeE--------------EEEecCCCcEEEEEE
Confidence             221              123446677777666

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.6e-22  Score=197.73  Aligned_cols=214  Identities=14%  Similarity=0.164  Sum_probs=154.7

Q ss_pred             CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ...+.++.+ +|+.+++.|   ..|.||......     ....+.+|.       .+...+.+++++++|++++.|    
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~-------~~v~~~~~~~~~~~l~s~~~d----   95 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHT-------GTIWSIDVDCFTKYCVTGSAD----   95 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----EEEEECCCS-------SCEEEEEECTTSSEEEEEETT----
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcC-------CcEEEEEEcCCCCEEEEEeCC----
Confidence            345778888 788888765   478999865543     233455552       223344445556677777765    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-----CeEEEEEcCCCCceEEecc-c
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-----NRLCQWDMRDRSGIVQNMV-K  404 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-----~tIklWD~R~~~~~Vq~l~-g  404 (634)
                        ++|++||+.+|+++..+. |...|  ..++|+|+        +..+++++.+     +.|++||++..... ..+. .
T Consensus        96 --g~i~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~--------~~~l~~~~~~~~~~~g~i~~~d~~~~~~~-~~~~~~  161 (369)
T 3zwl_B           96 --YSIKLWDVSNGQCVATWK-SPVPV--KRVEFSPC--------GNYFLAILDNVMKNPGSINIYEIERDSAT-HELTKV  161 (369)
T ss_dssp             --TEEEEEETTTCCEEEEEE-CSSCE--EEEEECTT--------SSEEEEEECCBTTBCCEEEEEEEEECTTT-CCEEEE
T ss_pred             --CeEEEEECCCCcEEEEee-cCCCe--EEEEEccC--------CCEEEEecCCccCCCCEEEEEEecCCccc-eeeccc
Confidence              799999999999999998 66654  56699998        6799999999     99999999875421 1111 0


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                      ....+.. ..++  .....+.+++++++| +||+|+.||.|++||+.+.......+.+|..+|++|+|+|||++|++ +.
T Consensus       162 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  238 (369)
T 3zwl_B          162 SEEPIHK-IITH--EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR  238 (369)
T ss_dssp             CSSCSEE-EECC--TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccceeee-ccCC--cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence            0011000 0000  011267899999998 79999999999999998732466788899999999999999999999 89


Q ss_pred             CCcEEEEEcccccCCCCeeeeec
Q 047036          483 DTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       483 D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      |++|++||+.    +++.+..|.
T Consensus       239 d~~i~v~d~~----~~~~~~~~~  257 (369)
T 3zwl_B          239 DTNSFLVDVS----TLQVLKKYE  257 (369)
T ss_dssp             TSEEEEEETT----TCCEEEEEE
T ss_pred             CceEEEEECC----CCceeeeec
Confidence            9999999986    566665555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=1.6e-22  Score=226.57  Aligned_cols=255  Identities=12%  Similarity=0.119  Sum_probs=186.4

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ..+.++++ +|+.+++.|   ..|.||....+.     ....+.+|.       .|...+.+++++++|++++.|     
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~d-----   76 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTE-------TPVRAGKFIARKNWIIVGSDD-----   76 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCS-------SCEEEEEEEGGGTEEEEEETT-----
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eEEEEecCC-------CcEEEEEEeCCCCEEEEEeCC-----
Confidence            45777888 888888865   478899865532     233455542       234444555566777777765     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       ++|++||+.+|+.+.++.+|...|  ..++|+|+        +..|++|+.|++|++||++.+...++.+.+|..    
T Consensus        77 -g~i~vw~~~~~~~~~~~~~~~~~v--~~~~~s~~--------~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----  141 (814)
T 3mkq_A           77 -FRIRVFNYNTGEKVVDFEAHPDYI--RSIAVHPT--------KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH----  141 (814)
T ss_dssp             -SEEEEEETTTCCEEEEEECCSSCE--EEEEECSS--------SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS----
T ss_pred             -CeEEEEECCCCcEEEEEecCCCCE--EEEEEeCC--------CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC----
Confidence             799999999999999999999976  46699998        678999999999999999986555666665543    


Q ss_pred             cccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccccccccccC-CCCCeEEEEECC--CCCEEEE-EcCCc
Q 047036          412 WTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG-LGSPITHVDVTY--DGKWILG-TTDTY  485 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~G-H~d~ItsVdfSp--DGk~LlS-S~D~t  485 (634)
                                 .+.+++++| +| .|++|+.||+|++||+.+.+ ....+.. |..+|.+++|+|  +|.+|++ +.|++
T Consensus       142 -----------~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  209 (814)
T 3mkq_A          142 -----------FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (814)
T ss_dssp             -----------CEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred             -----------cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence                       367899999 77 79999999999999987754 4455554 458999999999  9999999 88999


Q ss_pred             EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeC
Q 047036          486 LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF  565 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl  565 (634)
                      |++||+.    .++.+..+.+|.+..                  ..+.|+|.        |  ...++++.++.|.+||+
T Consensus       210 i~~~d~~----~~~~~~~~~~~~~~v------------------~~~~~~~~--------~--~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          210 IKIWDYQ----TKSCVATLEGHMSNV------------------SFAVFHPT--------L--PIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             EEEEETT----TTEEEEEEECCSSCE------------------EEEEECSS--------S--SEEEEEETTSCEEEEET
T ss_pred             EEEEECC----CCcEEEEEcCCCCCE------------------EEEEEcCC--------C--CEEEEEeCCCeEEEEEC
Confidence            9999975    566777777665311                  12334433        3  23444577899999998


Q ss_pred             hhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          566 QQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       566 ~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      ..   ++.             ...+..+.+.|..+.|
T Consensus       258 ~~---~~~-------------~~~~~~~~~~v~~~~~  278 (814)
T 3mkq_A          258 ST---YKV-------------EKTLNVGLERSWCIAT  278 (814)
T ss_dssp             TT---CSE-------------EEEECCSSSSEEEEEE
T ss_pred             CC---CcE-------------EEEeecCCCcEEEEEE
Confidence            73   222             1345556666666666

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=5e-23  Score=201.66  Aligned_cols=154  Identities=10%  Similarity=0.133  Sum_probs=121.5

Q ss_pred             eeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC----cEEEEEeccCCCcceeEEEEec--CCCCCCCCCCCEEEEEe
Q 047036          309 KALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG----KIVTEWKFEKDGTDITMRDITN--DTKSSQLDPSESTFLGL  382 (634)
Q Consensus       309 ~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsP--d~K~~q~~~g~~laSGS  382 (634)
                      ..+.++.++++|++++.|      ++|++||+.++    +++..+.+|...|  ..++|+|  +        +.+|++|+
T Consensus        15 ~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~d--------~~~l~s~~   78 (351)
T 3f3f_A           15 HDVVYDFYGRHVATCSSD------QHIKVFKLDKDTSNWELSDSWRAHDSSI--VAIDWASPEY--------GRIIASAS   78 (351)
T ss_dssp             EEEEECSSSSEEEEEETT------SEEEEEEECSSSCCEEEEEEEECCSSCE--EEEEECCGGG--------CSEEEEEE
T ss_pred             eEEEEcCCCCEEEEeeCC------CeEEEEECCCCCCcceecceeccCCCcE--EEEEEcCCCC--------CCEEEEEc
Confidence            334444455667777765      79999999987    6889999999986  4669998  4        57999999


Q ss_pred             CCCeEEEEEcCCCC--------ceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccc
Q 047036          383 DDNRLCQWDMRDRS--------GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       383 ~D~tIklWD~R~~~--------~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t  451 (634)
                      .|++|++||++.+.        ..+..+.+|.               ..+.+++++|+  + +||+|+.||.|+|||+.+
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK---------------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCS---------------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccC---------------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence            99999999998753        2244444443               34688999998  7 799999999999999765


Q ss_pred             ccc-----------------------------------------------------------ccccccCCCCCeEEEEEC
Q 047036          452 MRQ-----------------------------------------------------------AKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       452 ~r~-----------------------------------------------------------akt~L~GH~d~ItsVdfS  472 (634)
                      ++.                                                           ....+++|..+|++|+|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~  223 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA  223 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC
Confidence            321                                                           134567899999999999


Q ss_pred             CCC----CEEEE-EcCCcEEEEEccc
Q 047036          473 YDG----KWILG-TTDTYLILICTLF  493 (634)
Q Consensus       473 pDG----k~LlS-S~D~tIrLWD~~~  493 (634)
                      |+|    ++|++ +.|++|+|||+..
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            999    88998 8999999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.1e-22  Score=207.47  Aligned_cols=134  Identities=16%  Similarity=0.157  Sum_probs=107.8

Q ss_pred             CcEEEE---------eCCCCcEEEEEe-ccCCCcceeEEEEec--CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEE
Q 047036          333 PGVQQL---------DIETGKIVTEWK-FEKDGTDITMRDITN--DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQ  400 (634)
Q Consensus       333 ~TIrlW---------DleTGK~V~~lk-gH~~~V~I~vvsfsP--d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq  400 (634)
                      ++|++|         |+.++++++.+. +|.+.|  ..++|+|  +        +.++++|+.|++|++||++++.. ++
T Consensus        95 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~-~~  163 (343)
T 3lrv_A           95 NRLLLLYPGNQITILDSKTNKVLREIEVDSANEI--IYMYGHNEVN--------TEYFIWADNRGTIGFQSYEDDSQ-YI  163 (343)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE--EEEECCC-----------CCEEEEEETTCCEEEEESSSSCE-EE
T ss_pred             CeEEEEEccCceEEeecCCcceeEEeecCCCCCE--EEEEcCCCCC--------CCEEEEEeCCCcEEEEECCCCcE-EE
Confidence            567666         566888888876 777765  4569999  7        67999999999999999998654 33


Q ss_pred             ecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc-ccccC-CCCCeEEEEECCCCCE
Q 047036          401 NMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK-TAFPG-LGSPITHVDVTYDGKW  477 (634)
Q Consensus       401 ~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak-t~L~G-H~d~ItsVdfSpDGk~  477 (634)
                      .+..+              ....+.|++++|+| +||+|+.||+|||||+.+++ .. ..+.+ |..+|++|+|+|||++
T Consensus       164 ~~~~~--------------~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          164 VHSAK--------------SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD-QASSRFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             EECCC--------------SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT-SCCEECCCCTTSCEEEEEECTTSSE
T ss_pred             EEecC--------------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC-CCccEEeccCCCCEEEEEEeCCCCE
Confidence            33211              12246899999999 79999999999999998875 44 67887 9999999999999999


Q ss_pred             EEEEcCCcEEEEEcc
Q 047036          478 ILGTTDTYLILICTL  492 (634)
Q Consensus       478 LlSS~D~tIrLWD~~  492 (634)
                      |+++.|++|+|||++
T Consensus       229 l~s~~~~~v~iwd~~  243 (343)
T 3lrv_A          229 MVVECDQTVVCFDLR  243 (343)
T ss_dssp             EEEEESSBEEEEETT
T ss_pred             EEEEeCCeEEEEEcC
Confidence            999557799999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=9.6e-23  Score=203.37  Aligned_cols=280  Identities=10%  Similarity=0.081  Sum_probs=179.6

Q ss_pred             CCcEEEeee-CCC-eEEEec------CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCC
Q 047036          255 GVQSLTLGA-LDN-SFLVSD------LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPL  325 (634)
Q Consensus       255 ~~~~LavG~-~D~-sfvv~G------~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~  325 (634)
                      .....++.+ +++ .+++.|      ..|.||....+.+..   ...+ +| .++...+|+|+.     .++++|++++.
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~-----~~~~~l~~~~~   88 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL---LREI-EKAKPIKCGTFGATS-----LQQRYLATGDF   88 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE---EEEE-EESSCEEEEECTTCC-----TTTCCEEEEET
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc---eeee-cccCcEEEEEEcCCC-----CCCceEEEecC
Confidence            345788888 766 566555      479999876544211   1111 22 233555566542     12466777776


Q ss_pred             CCCCCCCCcEEEEeCCCCc-EEEEEeccCCCcceeEEEE------ecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036          326 KDGKPQAPGVQQLDIETGK-IVTEWKFEKDGTDITMRDI------TNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI  398 (634)
Q Consensus       326 d~~~~~~~TIrlWDleTGK-~V~~lkgH~~~V~I~vvsf------sPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~  398 (634)
                      |      ++|++||+.+++ .+..+.+|...|  ..++|      +|+        +..+++|+.|++|++||++.+.+.
T Consensus        89 d------g~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~s~~--------~~~l~~~~~d~~i~vwd~~~~~~~  152 (357)
T 3i2n_A           89 G------GNLHIWNLEAPEMPVYSVKGHKEII--NAIDGIGGLGIGEG--------APEIVTGSRDGTVKVWDPRQKDDP  152 (357)
T ss_dssp             T------SCEEEECTTSCSSCSEEECCCSSCE--EEEEEESGGGCC-C--------CCEEEEEETTSCEEEECTTSCSSC
T ss_pred             C------CeEEEEeCCCCCccEEEEEecccce--EEEeeccccccCCC--------ccEEEEEeCCCeEEEEeCCCCCCc
Confidence            5      689999999998 999999999976  34444      565        679999999999999999987645


Q ss_pred             EEecccCCCCccccccccccccCcceEEEE----ECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFA----STGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva----~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp  473 (634)
                      +..+..|...           ....+.+++    +++++ +|++|+.||.|++||+.+++ . ....+|..+|++|+|+|
T Consensus       153 ~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-~~~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          153 VANMEPVQGE-----------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-L-RWETNIKNGVCSLEFDR  219 (357)
T ss_dssp             SEEECCCTTS-----------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-E-EEEEECSSCEEEEEESC
T ss_pred             ceeccccCCC-----------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-e-eeecCCCCceEEEEcCC
Confidence            5666433321           123466666    67888 79999999999999998753 3 44567999999999999


Q ss_pred             ---CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCc
Q 047036          474 ---DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQE  549 (634)
Q Consensus       474 ---DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E  549 (634)
                         +|.+|++ +.|++|+|||+..    ++.+..|.            +...+.|... ...+.|+|.        +  .
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~------------~~~~~~~~~~-v~~~~~~~~--------~--~  272 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRT----QHPTKGFA------------SVSEKAHKST-VWQVRHLPQ--------N--R  272 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEE----EETTTEEE------------EEEEECCSSC-EEEEEEETT--------E--E
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcC----CCccccee------------eeccCCCcCC-EEEEEECCC--------C--C
Confidence               9999999 8899999999862    22222221            0000011100 012344433        2  2


Q ss_pred             eEEEE-EcCCeEEEEeChhhhcccccccccccC------CcceeeEEEeccCCCeeeecc
Q 047036          550 RHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQG------LKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       550 ~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~------~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      ..|++ +.++.|.+||+..-......   ...|      ++--....+..+...|..+.|
T Consensus       273 ~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          273 ELFLTAGGAGGLHLWKYEYPIQRSKK---DSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEETTSEEEEEEEECCSCC--C---CTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             cEEEEEeCCCcEEEeecCCCcccccc---cCCCCccccccccceeeccccCCCCeeEEEE
Confidence            24544 77999999998742211000   0000      011124677888999998887

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.91  E-value=4.8e-23  Score=214.44  Aligned_cols=190  Identities=9%  Similarity=0.046  Sum_probs=142.1

Q ss_pred             EEEeee-CCCeEEE--ec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLV--SD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       258 ~LavG~-~D~sfvv--~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      +.+|++ +|+++++  .|   ..|+||......     ....+..+..+.+++|+|++        ++|+++++      
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-----~~~~~~~~~~V~~v~fspdg--------~~l~s~s~------  196 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-----EKFEIETRGEVKDLHFSTDG--------KVVAYITG------  196 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-----EEEEEECSSCCCEEEECTTS--------SEEEEECS------
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-----EEEEeCCCCceEEEEEccCC--------ceEEeccc------
Confidence            677888 8988764  43   478999865532     22334333344666677665        45556654      


Q ss_pred             CCcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC----eEEEEEcCCCCce---EEec
Q 047036          332 APGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN----RLCQWDMRDRSGI---VQNM  402 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~----tIklWD~R~~~~~---Vq~l  402 (634)
                       +++++|+..+|+.+..  +.+|...|  ..++|+|+        +..+++++.|+    +|++||++.....   ...+
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~~~v--~~v~fspd--------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~  265 (365)
T 4h5i_A          197 -SSLEVISTVTGSCIARKTDFDKNWSL--SKINFIAD--------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV  265 (365)
T ss_dssp             -SCEEEEETTTCCEEEEECCCCTTEEE--EEEEEEET--------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             -eeEEEEEeccCcceeeeecCCCCCCE--EEEEEcCC--------CCEEEEEecCCcceeEEeecccccceecceeeeee
Confidence             3688899888987754  45687765  56699999        67899999988    7999998865321   1223


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-  480 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-  480 (634)
                      .+|.               ..++|++|+|+| +||+||.||+|||||+.+++...+.+.||..+|++|+|||||++||| 
T Consensus       266 ~~~~---------------~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          266 TNRF---------------KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             ESSC---------------SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             cCCC---------------CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            3332               346899999999 79999999999999998875333457899999999999999999999 


Q ss_pred             EcCCcEEEEEcc
Q 047036          481 TTDTYLILICTL  492 (634)
Q Consensus       481 S~D~tIrLWD~~  492 (634)
                      |.|++|||||+.
T Consensus       331 S~D~tvrvw~ip  342 (365)
T 4h5i_A          331 SAANTIHIIKLP  342 (365)
T ss_dssp             ETTSEEEEEECC
T ss_pred             eCCCeEEEEEcC
Confidence            999999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.6e-23  Score=231.72  Aligned_cols=249  Identities=9%  Similarity=-0.017  Sum_probs=165.7

Q ss_pred             CCcccccCcce---------eeEEeC-----------CcceEEecCCCCCCCCCCcEEEEeCCCCcEE----EEEeccCC
Q 047036          299 SKIGSNSTPKK---------ALLMRG-----------ETNMMLMSPLKDGKPQAPGVQQLDIETGKIV----TEWKFEKD  354 (634)
Q Consensus       299 ~~~g~~fsP~~---------~mL~~~-----------D~~mllsss~d~~~~~~~TIrlWDleTGK~V----~~lkgH~~  354 (634)
                      ++.+++|+|..         .+|+-+           +.+++++++.|      ++|++||+.++++.    .++.+|.+
T Consensus       135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D------~tI~iWd~~~~~~~~~~~~~l~~~~~  208 (524)
T 2j04_B          135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHS------SCIQIFKMNTSTLHCVKVQTIVHSFG  208 (524)
T ss_dssp             --CCCSCEEECCCCSSCSSEEEEEEEEEC------------------C------EEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred             ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCC------ceEEEEEccCCCCCceEEEEEEecCC
Confidence            44788888875         344332           23345445443      79999999998753    45778888


Q ss_pred             CcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce----------EEecccCCCCccccccccccccCcce
Q 047036          355 GTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI----------VQNMVKGDSPVLHWTQGHQFSRGTNF  424 (634)
Q Consensus       355 ~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~----------Vq~l~gh~s~V~~~~~g~~y~~~~~f  424 (634)
                      .|  ..++|+|++++.+  .+.+||+|+.|++|++||+..+.+.          +.++.+|               ...+
T Consensus       209 ~V--~~v~wsp~~~~~~--~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h---------------~~~v  269 (524)
T 2j04_B          209 EV--WDLKWHEGCHAPH--LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA---------------DSLI  269 (524)
T ss_dssp             SE--EEEEECSSCCCSS--SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT---------------TTCE
T ss_pred             cE--EEEEECCCCCCCC--CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC---------------CCCE
Confidence            76  4569999743221  1469999999999999999865321          1122222               2457


Q ss_pred             EEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEE--EECCCC-CEEEE-EcCCcEEEEEcccccCCCCe
Q 047036          425 QCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV--DVTYDG-KWILG-TTDTYLILICTLFSDKDGKT  500 (634)
Q Consensus       425 ssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsV--dfSpDG-k~LlS-S~D~tIrLWD~~~~~~~G~~  500 (634)
                      +|+++++++.||+||.||+|+|||+.+++.....+.+|..+|++|  +|+|+| ++||| |.|++|+|||++    ++++
T Consensus       270 ~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~----~~~~  345 (524)
T 2j04_B          270 TTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK----DIAT  345 (524)
T ss_dssp             EEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG----GHHH
T ss_pred             EEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC----CCCc
Confidence            899999888999999999999999986543455789999999999  679999 89999 999999999986    4666


Q ss_pred             eeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccccccccccc
Q 047036          501 KTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQ  580 (634)
Q Consensus       501 ~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~  580 (634)
                      +..+.+|....            .    ...+.|+|.        +  ...++++.|+.|.+||+..   +..       
T Consensus       346 ~~~~~~~~~~~------------~----v~~v~fsp~--------~--~~l~s~~~d~tv~lwd~~~---~~~-------  389 (524)
T 2j04_B          346 TKTTVSRFRGS------------N----LVPVVYCPQ--------I--YSYIYSDGASSLRAVPSRA---AFA-------  389 (524)
T ss_dssp             HCEEEEECSCC------------S----CCCEEEETT--------T--TEEEEECSSSEEEEEETTC---TTC-------
T ss_pred             ccccccccccC------------c----ccceEeCCC--------c--CeEEEeCCCCcEEEEECcc---ccc-------
Confidence            66666665210            0    023455543        2  2344556788999999874   221       


Q ss_pred             CCcceeeEEEeccCCCeeeeccccCc--cccCCCCCCCEEE
Q 047036          581 GLKSCYCYKIVLKDESIVESRFMHDK--FAVTDSPEAPLVV  619 (634)
Q Consensus       581 ~~~~~~~Y~i~~~~~~i~~~~f~~d~--f~~~~~~~~~iiv  619 (634)
                            ...+..|...|.++.| +++  +.++++.|..|.|
T Consensus       390 ------~~~l~gH~~~V~sva~-Sp~g~~l~Sgs~Dgtv~l  423 (524)
T 2j04_B          390 ------VHPLVSRETTITAIGV-SRLHPMVLAGSADGSLII  423 (524)
T ss_dssp             ------CEEEEECSSCEEEEEC-CSSCCBCEEEETTTEEEC
T ss_pred             ------ceeeecCCCceEEEEe-CCCCCeEEEEECCCEEEE
Confidence                  1457788889998888 433  2233333455543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=2.3e-22  Score=205.89  Aligned_cols=204  Identities=9%  Similarity=0.059  Sum_probs=148.9

Q ss_pred             CcEEEeee-CCC-eEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036          256 VQSLTLGA-LDN-SFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGK  329 (634)
Q Consensus       256 ~~~LavG~-~D~-sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~  329 (634)
                      ....++.+ +++ .+++.|   ..|.||........   ....+.+|. .+.+.+|+|.       ++++|++++.|   
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~-------~~~~l~s~~~d---  140 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQF-------NTNQLFVSSIR---  140 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETT-------EEEEEEEEETT---
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCC-------CCCEEEEEeCC---
Confidence            34777787 776 677765   58899987544311   111122331 2234444442       44567777665   


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccC---CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          330 PQAPGVQQLDIETGKIVTEWKFEK---DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       330 ~~~~TIrlWDleTGK~V~~lkgH~---~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                         ++|++||+. ++.+..+.+|.   ..|  ..++|+|+        +..+++|+.|++|++||++.  ..+..+.+|.
T Consensus       141 ---~~i~iwd~~-~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~  204 (383)
T 3ei3_B          141 ---GATTLRDFS-GSVIQVFAKTDSWDYWY--CCVDVSVS--------RQMLATGDSTGRLLLLGLDG--HEIFKEKLHK  204 (383)
T ss_dssp             ---TEEEEEETT-SCEEEEEECCCCSSCCE--EEEEEETT--------TTEEEEEETTSEEEEEETTS--CEEEEEECSS
T ss_pred             ---CEEEEEECC-CCceEEEeccCCCCCCe--EEEEECCC--------CCEEEEECCCCCEEEEECCC--CEEEEeccCC
Confidence               799999999 57788887665   544  56799998        67999999999999999953  3466776554


Q ss_pred             CCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccc---cccccccCCCCCeEEEEECC-CCCEEEE
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMR---QAKTAFPGLGSPITHVDVTY-DGKWILG  480 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r---~akt~L~GH~d~ItsVdfSp-DGk~LlS  480 (634)
                      .               .+.+++++|++  .||+|+.||+|+|||+.+.+   .....+ +|..+|++|+|+| ||++|++
T Consensus       205 ~---------------~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          205 A---------------KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             S---------------CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred             C---------------cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence            4               35789999988  59999999999999988632   133344 7999999999999 9999999


Q ss_pred             -EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          481 -TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       481 -S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                       +.|++|+|||+.    +++.+..+.+|.
T Consensus       269 ~~~d~~i~iwd~~----~~~~~~~~~~~~  293 (383)
T 3ei3_B          269 TDQRNEIRVYSSY----DWSKPDQIIIHP  293 (383)
T ss_dssp             EESSSEEEEEETT----BTTSCSEEEECC
T ss_pred             EcCCCcEEEEECC----CCcccccccccc
Confidence             899999999986    566666677665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.5e-23  Score=213.72  Aligned_cols=255  Identities=15%  Similarity=0.208  Sum_probs=171.6

Q ss_pred             CcEEEeee-C-CCeEEEec---CeeeEEEccC--CceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036          256 VQSLTLGA-L-DNSFLVSD---LGLQVYRNYN--RGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       256 ~~~LavG~-~-D~sfvv~G---~~igV~k~~~--~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      ..+.++.+ + |+.+++.|   ..|.||....  .+.... ....+ .|       -.+...+.+.+++++|++++.|  
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~-~h-------~~~v~~~~~~~~~~~l~s~s~d--  132 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTY-DC-------SSTVTQITMIPNFDAFAVSSKD--  132 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEE-EC-------SSCEEEEEECTTSSEEEEEETT--
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-eeeec-cC-------CCCEEEEEEeCCCCEEEEEeCC--
Confidence            45777777 7 88888876   4899998643  111111 11122 12       1234445555566777888775  


Q ss_pred             CCCCCcEEEEeCC---CCcEEEEEeccCCCcceeEEEEe----------------cCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          329 KPQAPGVQQLDIE---TGKIVTEWKFEKDGTDITMRDIT----------------NDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       329 ~~~~~TIrlWDle---TGK~V~~lkgH~~~V~I~vvsfs----------------Pd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                          ++|++||++   +|++++.+.+|.    |..+.|+                |+        +..+++|+.|++|++
T Consensus       133 ----g~i~vwd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~d~~i~i  196 (437)
T 3gre_A          133 ----GQIIVLKVNHYQQESEVKFLNCEC----IRKINLKNFGKNEYAVRMRAFVNEE--------KSLLVALTNLSRVII  196 (437)
T ss_dssp             ----SEEEEEEEEEEEETTEEEEEEEEE----EEEEEGGGGSSCCCEEEEEEEECSS--------CEEEEEEETTSEEEE
T ss_pred             ----CEEEEEEeccccCCceeeccccce----eEEEEccCcccccCceEEEEEEcCC--------CCEEEEEeCCCeEEE
Confidence                799999995   888888887762    2233433                34        579999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-CCCCCeE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPIT  467 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~It  467 (634)
                      ||++++.. +..+.++.             +...+++++++|+| +||+|+.||+|+|||+.+++ ....+. +|..+|+
T Consensus       197 wd~~~~~~-~~~~~~~~-------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~  261 (437)
T 3gre_A          197 FDIRTLER-LQIIENSP-------------RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPIT  261 (437)
T ss_dssp             EETTTCCE-EEEEECCG-------------GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEE
T ss_pred             EeCCCCee-eEEEccCC-------------CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceE
Confidence            99998654 56665410             12247899999999 79999999999999998764 555554 7888999


Q ss_pred             EE----EECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccc-----cC--CCcccc
Q 047036          468 HV----DVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHL-----AG--TDNKIH  535 (634)
Q Consensus       468 sV----dfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~-----~g--~~i~Ft  535 (634)
                      +|    +|+|||++|++ +.|++|+|||+.    +|+++..|.+|...    +..+.+.|.....     .+  .....+
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~v~  333 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFV----KGHCQYAFINSDEQ----PSMEHFLPIEKGLEELNFCGIRSLNALS  333 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETT----TTEEEEEEESSSSC----CCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcC----CCcEEEEEEcCCCC----CccceecccccccccceecccccCCceE
Confidence            99    55568999999 789999999986    68889999988642    2233344432110     00  011122


Q ss_pred             cccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          536 GGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       536 ~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      ...|+.    +   .+|++ +.|+.|++||+..
T Consensus       334 ~l~~~~----~---~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          334 TISVSN----D---KILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             CEEEET----T---EEEEEEGGGTEEEEEETTC
T ss_pred             EEEECC----c---eEEEecCCCCeEEEEECCC
Confidence            233431    2   45655 5699999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=4e-21  Score=194.67  Aligned_cols=275  Identities=12%  Similarity=0.097  Sum_probs=181.8

Q ss_pred             CcEEEeee-C-CCeEEEec---CeeeEEEccCCceecceeEEEe--cCCCCCcccccCcceeeEEeC-CcceEEecCCCC
Q 047036          256 VQSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRF--DGGSSKIGSNSTPKKALLMRG-ETNMMLMSPLKD  327 (634)
Q Consensus       256 ~~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~--~~~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~  327 (634)
                      ....++.+ + ++.+++.|   ..|.||..........-.....  ..... ....-.+...+.+.+ +.++|++++.| 
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d-  121 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH-PDVHRYSVETVQWYPHDTGMFTSSSFD-  121 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC-TTCCSSCEEEEEECTTCTTCEEEEETT-
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccc-cccCCCcEEEEEEccCCCcEEEEEeCC-
Confidence            34777777 6 88877765   4788998755432111000000  00000 000112334444444 56677777765 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                           ++|++||+.+++++..+.. ...+  ..+.++|.++.     +..+++|+.|+.|++||++++.. +..+.+|..
T Consensus       122 -----~~i~iwd~~~~~~~~~~~~-~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~  187 (408)
T 4a11_B          122 -----KTLKVWDTNTLQTADVFNF-EETV--YSHHMSPVSTK-----HCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQ  187 (408)
T ss_dssp             -----SEEEEEETTTTEEEEEEEC-SSCE--EEEEECSSCSS-----CCEEEEEESSSSEEEEESSSSCC-CEEECCCCS
T ss_pred             -----CeEEEeeCCCCccceeccC-CCce--eeeEeecCCCC-----CcEEEEEcCCCeEEEEeCCCcce-eeeecCCCC
Confidence                 7999999999999999884 4443  45688886431     45999999999999999998654 456655443


Q ss_pred             CccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEecccccccccc---------------ccCCCCCeEEEE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTA---------------FPGLGSPITHVD  470 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~---------------L~GH~d~ItsVd  470 (634)
                                     .+.+++++|++ + ||+|+.||.|++||+.+.......               +.+|..+|++|+
T Consensus       188 ---------------~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          188 ---------------EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             ---------------CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             ---------------cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence                           46899999998 4 899999999999998654322222               368999999999


Q ss_pred             ECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCc
Q 047036          471 VTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQE  549 (634)
Q Consensus       471 fSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E  549 (634)
                      |+|+|++|++ +.|++|++||+.    .++....+.++.....                .....+...     .  +...
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~----------------~~~~~~~~~-----~--~~~~  305 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSS----NGENTLVNYGKVCNNS----------------KKGLKFTVS-----C--GCSS  305 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETT----TCCBCCCCCCCCCCCC----------------SSCCCCEEC-----C--SSSS
T ss_pred             EcCCCCEEEEecCCCeEEEEECC----CCccceeccccccccc----------------cccceeEEe-----c--CCCc
Confidence            9999999999 899999999986    4554443433322110                011222211     0  1123


Q ss_pred             eEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036          550 RHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH  604 (634)
Q Consensus       550 ~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~  604 (634)
                      ..++++.++.|.+||+..   +..             ...+..+...|..+.|..
T Consensus       306 ~~~~~~~~~~i~v~d~~~---~~~-------------~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          306 EFVFVPYGSTIAVYTVYS---GEQ-------------ITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             CEEEEEETTEEEEEETTT---CCE-------------EEEECCCSSCEEEEEEET
T ss_pred             eEEEEecCCEEEEEECcC---Ccc-------------eeeeccCCCeEEEEEEcC
Confidence            577788899999999873   332             246778889999888843

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=2.5e-22  Score=202.07  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=156.2

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      +.+++++++|++++.+      ++|++||+.+++  .+.++.+|...|  ..++|+|+        +..+++|+.|++|+
T Consensus        14 ~~~s~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~~~~~dg~i~   77 (372)
T 1k8k_C           14 HAWNKDRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQV--TGVDWAPD--------SNRIVTCGTDRNAY   77 (372)
T ss_dssp             EEECTTSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCE--EEEEEETT--------TTEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCCCcc--cEEEEeCC--------CCEEEEEcCCCeEE
Confidence            3334455667777654      799999999998  999999999976  46699998        67999999999999


Q ss_pred             EEEcCCCCce-EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc---ccccccCCC
Q 047036          389 QWDMRDRSGI-VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ---AKTAFPGLG  463 (634)
Q Consensus       389 lWD~R~~~~~-Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~---akt~L~GH~  463 (634)
                      +||++.+... ...+.+|               ...+.+++++++| +||+|+.||.|++||+...+.   ......+|.
T Consensus        78 vwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  142 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRI---------------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  142 (372)
T ss_dssp             EEEEETTEEEEEEECCCC---------------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             EEECCCCeeeeeEEeecC---------------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence            9999875421 1122222               3357899999998 899999999999999876431   234456899


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV  542 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~  542 (634)
                      .+|++|+|+|+|++|++ +.|++|++||+.........   .....+...+..+.++..+.|... ...+.|+|.     
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-----  213 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP---APTPWGSKMPFGELMFESSSSCGW-VHGVCFSAN-----  213 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCC---CCBTTBSCCCTTCEEEECCCCSSC-EEEEEECSS-----
T ss_pred             CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccc---cccccccccchhhheEecCCCCCe-EEEEEECCC-----
Confidence            99999999999999999 88999999997532111100   000011111122233322222110 012333332     


Q ss_pred             ccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          543 TENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       543 t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                         +  ...++++.++.|.+||+..   ++.             ...+..+...|..+.|-
T Consensus       214 ---~--~~l~~~~~d~~i~i~d~~~---~~~-------------~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          214 ---G--SRVAWVSHDSTVCLADADK---KMA-------------VATLASETLPLLAVTFI  253 (372)
T ss_dssp             ---S--SEEEEEETTTEEEEEEGGG---TTE-------------EEEEECSSCCEEEEEEE
T ss_pred             ---C--CEEEEEeCCCEEEEEECCC---Cce-------------eEEEccCCCCeEEEEEe
Confidence               2  2445557899999999973   222             24667777788888873

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=1.1e-22  Score=213.03  Aligned_cols=256  Identities=15%  Similarity=0.061  Sum_probs=157.1

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEE-----EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT-----EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~-----~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .++++|++++.|      ++||+||+.+|++..     .+.||.+.|  ..++|+|..-......+++|||||.|++||+
T Consensus        99 ~~~~~las~~~d------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v--~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A           99 VYSLFLACVCQD------NTVRLIITKNETIITQHVLGGKSGHHNFV--NDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             EEEEEEEEEETT------SCEEEEEEETTEEEEEEEECTTTSCSSCE--EEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             CCCCEEEEEeCC------CcEEEEECCCCccceeeeecccCCCCCce--EEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence            344456666654      799999999987643     478999987  4669998211000001579999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccc-----------
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAK-----------  456 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~ak-----------  456 (634)
                      ||++.++++ ..+.+|.+               .+.+++|+|++  +||+|+.||+|||||+.+++...           
T Consensus       171 Wd~~~~~~~-~~~~~~~~---------------~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          171 WRLTDEGPI-LAGYPLSS---------------PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEETTEEE-EEEEECSS---------------CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             EECCCCcee-eeecCCCC---------------CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            999876654 34434433               35789999986  69999999999999987643111           


Q ss_pred             -------------ccccCCCCCeEEEEEC-CCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeec
Q 047036          457 -------------TAFPGLGSPITHVDVT-YDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLT  521 (634)
Q Consensus       457 -------------t~L~GH~d~ItsVdfS-pDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~  521 (634)
                                   ....+|.+.|.+|.|+ |||+.|++ +.|+++++||+.    .++....|.+|....    ..+.+.
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~----~~~~~~  306 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKL----GPKNLL  306 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------------CCS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCcc----ccEEEc
Confidence                         1234788999999997 89999999 899999999986    355555566655421    111112


Q ss_pred             CCCccccCCCcccccccccccccCCCCceEEEEE-cCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeee
Q 047036          522 PLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVES  600 (634)
Q Consensus       522 Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~  600 (634)
                      |........ .....+.|.+ .   ....+++++ .|+.|.+||+..   ++..             ..+..+...|.++
T Consensus       307 ~~~~~~~~~-~~~~~~~~~~-~---~~~~~~~sgs~Dg~V~lwd~~~---~~~~-------------~~~~~~~~~V~sv  365 (393)
T 4gq1_A          307 PNVQGISLF-PSLLGACPHP-R---YMDYFATAHSQHGLIQLINTYE---KDSN-------------SIPIQLGMPIVDF  365 (393)
T ss_dssp             CSEEEECSS-CCSSCCEECS-S---CTTEEEEEETTTTEEEEEETTC---TTCC-------------EEEEECSSCEEEE
T ss_pred             ccccccccc-CcceeEEEcc-C---CCCEEEEEECCCCEEEEEECCC---CcEE-------------EEecCCCCcEEEE
Confidence            211100000 0111223332 1   123566664 589999999873   3221             2456778889988


Q ss_pred             ccccCccccCCCCCCCEEEEcCCceeeeecc
Q 047036          601 RFMHDKFAVTDSPEAPLVVATPMKVSSISLS  631 (634)
Q Consensus       601 ~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~  631 (634)
                      .| +++       .+-|.+|+.+-|..+.+-
T Consensus       366 af-spd-------G~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          366 CW-HQD-------GSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             EE-CTT-------SSEEEEEESSEEEEEEEG
T ss_pred             EE-cCC-------CCEEEEEeCCCeEEEEEe
Confidence            88 221       257788888888777663

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.5e-22  Score=199.65  Aligned_cols=199  Identities=7%  Similarity=0.035  Sum_probs=147.6

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ..+.++.+ +|+.+++.|   ..|.||.......   .....+.+|. ++.+..|+|.      .++++|++++.|    
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~------~~~~~l~s~~~d----   78 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHP------KFGTILASCSYD----   78 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCG------GGCSEEEEEETT----
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---eeeeEecCCCCcEEEEEeCCC------CCCCEEEEeccC----
Confidence            34777888 788877765   4799998653221   1233455552 2233444332      226677777765    


Q ss_pred             CCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-eEEecccCCC
Q 047036          331 QAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-IVQNMVKGDS  407 (634)
Q Consensus       331 ~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-~Vq~l~gh~s  407 (634)
                        ++|++||+.+|+  .+..+.+|...|  ..++|+|+..      +..+++|+.|++|++||++.... ....+.+|. 
T Consensus        79 --g~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-  147 (379)
T 3jrp_A           79 --GKVLIWKEENGRWSQIAVHAVHSASV--NSVQWAPHEY------GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-  147 (379)
T ss_dssp             --SCEEEEEEETTEEEEEEEECCCSSCE--EEEEECCGGG------CSEEEEEETTSEEEEEECCTTSCCCEEEEECCT-
T ss_pred             --CEEEEEEcCCCceeEeeeecCCCcce--EEEEeCCCCC------CCEEEEecCCCcEEEEecCCCCceeeEEecCCC-
Confidence              799999999998  888999999876  5669999721      36899999999999999997632 223333333 


Q ss_pred             CccccccccccccCcceEEEEECC-------------CC-eEEEEECCCcEEEEeccccc---cccccccCCCCCeEEEE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTG-------------DG-SIVVGSLDGKIRLYSKTSMR---QAKTAFPGLGSPITHVD  470 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~-------------dG-~IASGS~DGtIRLWD~~t~r---~akt~L~GH~d~ItsVd  470 (634)
                                    ..+.+++++|             ++ +||+|+.||.|+|||+.+.+   .....+.+|..+|++|+
T Consensus       148 --------------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~  213 (379)
T 3jrp_A          148 --------------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  213 (379)
T ss_dssp             --------------TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             --------------CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE
Confidence                          3468889988             56 89999999999999987642   13357889999999999


Q ss_pred             ECCC---CCEEEE-EcCCcEEEEEcc
Q 047036          471 VTYD---GKWILG-TTDTYLILICTL  492 (634)
Q Consensus       471 fSpD---Gk~LlS-S~D~tIrLWD~~  492 (634)
                      |+|+   |++|++ +.|++|+|||+.
T Consensus       214 ~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          214 WSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence            9999   899999 899999999976

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.9e-22  Score=202.00  Aligned_cols=233  Identities=10%  Similarity=0.148  Sum_probs=168.4

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++.+ +|+.+++.|   ..|.||. ....     ....+.+|.       .|...+.+.+++++|++++.|      
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~-----~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d------  170 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGA-----LLNVLNFHR-------APIVSVKWNKDGTHIISMDVE------  170 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEE-TTSC-----EEEEECCCC-------SCEEEEEECTTSSEEEEEETT------
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC-----eeeeccCCC-------ccEEEEEECCCCCEEEEEecC------
Confidence            4677777 777777754   4788887 2221     233444442       233444455566677777765      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCC---------------cceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDG---------------TDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~---------------V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                      ++|++||+.+|+.+..+..|...               |  ..++|+|+         ..+++|+.|+.|++||++.+..
T Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~~g~i~~~d~~~~~~  239 (425)
T 1r5m_A          171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLG--VDVEWVDD---------DKFVIPGPKGAIFVYQITEKTP  239 (425)
T ss_dssp             CCEEEEETTTTEEEEEECCC---------------CCCB--SCCEEEET---------TEEEEECGGGCEEEEETTCSSC
T ss_pred             CeEEEEECCCCcEEEEeeccccCccceeeccccCCccee--eEEEEcCC---------CEEEEEcCCCeEEEEEcCCCce
Confidence            68999999999999999998875               4  34588886         5799999999999999998653


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK  476 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk  476 (634)
                       +..+.+|..               .+.++++++++ +||+|+.||.|++||+.+++ ....+.+|..+|++|+|+|+| 
T Consensus       240 -~~~~~~~~~---------------~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-  301 (425)
T 1r5m_A          240 -TGKLIGHHG---------------PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-  301 (425)
T ss_dssp             -SEEECCCSS---------------CEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-
T ss_pred             -eeeeccCCC---------------ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-
Confidence             455544433               46889999998 89999999999999998864 777888999999999999999 


Q ss_pred             EEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE
Q 047036          477 WILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT  555 (634)
Q Consensus       477 ~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS  555 (634)
                      +|++ +.|++|++||+.    .++.+..+.+|....                  ..+.|+|.        +  ...++++
T Consensus       302 ~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i------------------~~~~~s~~--------~--~~l~~~~  349 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLK----QNTLLALSIVDGVPI------------------FAGRISQD--------G--QKYAVAF  349 (425)
T ss_dssp             EEEEEETTSEEEEEETT----TTEEEEEEECTTCCE------------------EEEEECTT--------S--SEEEEEE
T ss_pred             EEEEEeCCCcEEEEECC----CCcEeEecccCCccE------------------EEEEEcCC--------C--CEEEEEE
Confidence            8887 999999999985    566666666553210                  12344433        2  2344557


Q ss_pred             cCCeEEEEeChhhh
Q 047036          556 VGKFSVIWDFQQVK  569 (634)
Q Consensus       556 tg~~viiWdl~~v~  569 (634)
                      .++.|.+||+..-.
T Consensus       350 ~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          350 MDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTSCEEEEECHHHH
T ss_pred             CCCeEEEEECCCCc
Confidence            79999999998544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=7.6e-22  Score=207.27  Aligned_cols=235  Identities=17%  Similarity=0.232  Sum_probs=159.2

Q ss_pred             CCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC
Q 047036          265 DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE  341 (634)
Q Consensus       265 D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle  341 (634)
                      ++.+++.|   ..|.||......     ....+.+|.       .+...+.+.+++ +|++++.|      ++|++||++
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~-------~~V~~l~~~~~~-~l~s~s~d------g~i~vwd~~  191 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHD-------GGVWALKYAHGG-ILVSGSTD------RTVRVWDIK  191 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTE-----EEEEECCCS-------SCEEEEEECSTT-EEEEEETT------SCEEEEETT
T ss_pred             CCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCC-------cCEEEEEEcCCC-EEEEEeCC------CCEEEEECC
Confidence            34455554   478889865532     334455652       122333333333 56667665      799999999


Q ss_pred             CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc-----------c
Q 047036          342 TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV-----------L  410 (634)
Q Consensus       342 TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V-----------~  410 (634)
                      +|+++..+.+|...|  ..++|+|...      +..+++|+.|++|++||++...........+..+.           .
T Consensus       192 ~~~~~~~~~~h~~~v--~~l~~~~~~~------~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTV--RCLDIVEYKN------IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             TTEEEEEECCCSSCE--EEEEEEESSS------CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             CCcEEEEECCCCCcc--EEEEEecCCC------CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            999999999999986  4568885311      57899999999999999997643210000000000           0


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL  488 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL  488 (634)
                      ....+    +...+.++  ++++ +||+|+.||+|++||+.+++ ....+.+|..+|++++|+|+|++|++ +.|++|++
T Consensus       264 ~~~~~----~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          264 GVLRG----HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             EEECC----CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEccC----ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            00011    12233444  4556 89999999999999998864 77789999999999999999999999 99999999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      ||+.    +|+++..|.+|....    +              .+.|     +     +  ...++++.|+.|.+||+..
T Consensus       337 wd~~----~~~~~~~~~~h~~~v----~--------------~~~~-----~-----~--~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          337 WDLE----NGELMYTLQGHTALV----G--------------LLRL-----S-----D--KFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             EETT----TTEEEEEECCCSSCE----E--------------EEEE-----C-----S--SEEEEEETTSEEEEEETTT
T ss_pred             EECC----CCcEEEEEeCCCCcE----E--------------EEEE-----c-----C--CEEEEEeCCCcEEEEECCC
Confidence            9986    688888888775311    1              1222     2     1  1345557889999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=4e-23  Score=206.28  Aligned_cols=206  Identities=13%  Similarity=0.087  Sum_probs=140.5

Q ss_pred             cEEEeee-CC----CeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeC-CcceEEecCCCC
Q 047036          257 QSLTLGA-LD----NSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRG-ETNMMLMSPLKD  327 (634)
Q Consensus       257 ~~LavG~-~D----~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~  327 (634)
                      ...++.+ ++    +.+++.|   ..|.||......     ....+.+|.       .+...+.+++ ++++|++++.| 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~-------~~i~~~~~~~~~~~~l~s~~~d-  137 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHG-------NAINELKFHPRDPNLLLSVSKD-  137 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCC-------SCEEEEEECSSCTTEEEEEETT-
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCC-------CcEEEEEECCCCCCEEEEEeCC-
Confidence            3555555 44    4455543   467777754432     233444442       2233344444 56677777765 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEE---eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc
Q 047036          328 GKPQAPGVQQLDIETGKIVTEW---KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK  404 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~l---kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g  404 (634)
                           ++|++||+.+|+.+..+   .+|...|  ..++|+|+        +..+++|+.|++|++||++.+.. +..+..
T Consensus       138 -----g~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~  201 (366)
T 3k26_A          138 -----HALRLWNIQTDTLVAIFGGVEGHRDEV--LSADYDLL--------GEKIMSCGMDHSLKLWRINSKRM-MNAIKE  201 (366)
T ss_dssp             -----SCEEEEETTTTEEEEEECSTTSCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEESCSHHH-HHHHHH
T ss_pred             -----CeEEEEEeecCeEEEEecccccccCce--eEEEECCC--------CCEEEEecCCCCEEEEECCCCcc-ccccce
Confidence                 79999999999999999   7899876  46699998        67999999999999999997532 222211


Q ss_pred             CCC-----Cccccc--------cccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccc-------------cccc
Q 047036          405 GDS-----PVLHWT--------QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQ-------------AKTA  458 (634)
Q Consensus       405 h~s-----~V~~~~--------~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~-------------akt~  458 (634)
                      +..     ..+...        ......+...+.+++++ +.+|++|+.||.|++||+.+++.             ....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  280 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR  280 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecc
Confidence            000     000000        00000033456788888 44999999999999999876531             2456


Q ss_pred             ccCCCCCeEEEEECCC--CCEEEE-EcCCcEEEEEcc
Q 047036          459 FPGLGSPITHVDVTYD--GKWILG-TTDTYLILICTL  492 (634)
Q Consensus       459 L~GH~d~ItsVdfSpD--Gk~LlS-S~D~tIrLWD~~  492 (634)
                      +.+|..+|++|+|+||  |++|++ +.|++|+|||+.
T Consensus       281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence            7789999999999999  999999 889999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=4.6e-22  Score=222.60  Aligned_cols=251  Identities=10%  Similarity=0.088  Sum_probs=163.4

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      +.++.+ +|+.+++.|   ..|.||....+.     ....+.+|.       .+...+.++.++++|++++.|      +
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~h~-------~~v~~~~~s~~~~~l~s~s~D------~  494 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGV-----STRRFVGHT-------KDVLSVAFSLDNRQIVSASRD------R  494 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECCS-------SCEEEEEECTTSSCEEEEETT------S
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----ceeEEeCCC-------CCEEEEEEeCCCCEEEEEeCC------C
Confidence            445555 566666554   356666654321     223344542       123334445556677888775      7


Q ss_pred             cEEEEeCCCCcEEEEE----eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          334 GVQQLDIETGKIVTEW----KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       334 TIrlWDleTGK~V~~l----kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      +|++||+..+. ...+    .+|...|  ..++|+|++.      ...+++|+.|++|++||++... ++..+.+|... 
T Consensus       495 ~i~iwd~~~~~-~~~~~~~~~~h~~~v--~~~~~~~~~~------~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~-  563 (694)
T 3dm0_A          495 TIKLWNTLGEC-KYTISEGGEGHRDWV--SCVRFSPNTL------QPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGY-  563 (694)
T ss_dssp             CEEEECTTSCE-EEEECSSTTSCSSCE--EEEEECSCSS------SCEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-
T ss_pred             EEEEEECCCCc-ceeeccCCCCCCCcE--EEEEEeCCCC------cceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCC-
Confidence            99999987544 3333    4788876  5669999832      2589999999999999999764 45677766543 


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLIL  488 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrL  488 (634)
                                    +++++++|+| +||+||.||+|||||+.+++ ....+.. ...|.+|+|||+|.+|+++.|+.|+|
T Consensus       564 --------------v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~i  627 (694)
T 3dm0_A          564 --------------VSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-KLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKI  627 (694)
T ss_dssp             --------------EEEEEECTTSSEEEEEETTSBCEEEETTTTE-EEECCBC-SSCEEEEEECSSSSEEEEEETTEEEE
T ss_pred             --------------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEE
Confidence                          5789999999 79999999999999998864 5556654 56899999999999999988999999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      ||+.    .++.+..+..+......  ......|....  ...+..+...|++.   |  ...++++.|+.|.||++.
T Consensus       628 wd~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~l~~spd---g--~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          628 WDLE----SKSIVEDLKVDLKAEAE--KADNSGPAATK--RKVIYCTSLNWSAD---G--STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EETT----TTEEEEEECCCCC--------------------CCCCEEEEEECTT---S--SEEEEEETTSEEEEEEC-
T ss_pred             EECC----CCCChhhhccccccccc--cccccccccCC--ceeEEeeeEEEcCC---C--CEEEEEcCCCeEEEEecc
Confidence            9986    57777777655431100  00000000000  01112233445541   3  334444789999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=2.3e-21  Score=191.40  Aligned_cols=191  Identities=17%  Similarity=0.225  Sum_probs=144.5

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++.+ +|+.+++.|   ..|.+|........   ....+..|.       .+...+.+++++++|++++.+      
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~d------  162 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR---IKAELTSSA-------PACYALAISPDSKVCFSCCSD------  162 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--E---EEEEEECSS-------SCEEEEEECTTSSEEEEEETT------
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc---eeeecccCC-------CceEEEEECCCCCEEEEEeCC------
Confidence            4666777 677666643   47888886543211   122333331       122334445556677777665      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|++||+.+++.+..+.+|...|  ..++|+|+        +..+++|+.|++|++||++.+.. +..+.         
T Consensus       163 g~v~~~d~~~~~~~~~~~~~~~~i--~~~~~~~~--------~~~l~~~~~dg~i~~~d~~~~~~-~~~~~---------  222 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQFQGHTDGA--SCIDISND--------GTKLWTGGLDNTVRSWDLREGRQ-LQQHD---------  222 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSEEEEEETTTTEE-EEEEE---------
T ss_pred             CcEEEEeCCCCceeeeeecccCce--EEEEECCC--------CCEEEEEecCCcEEEEECCCCce-Eeeec---------
Confidence            689999999999999999999876  46699998        67999999999999999997643 33332         


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                             ....+.+++++|+| +||+|+.||.|++||+.+.+  ...+.+|..+|++++|+|||++|++ +.|++|++||
T Consensus       223 -------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          223 -------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             -------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence                   22346889999998 79999999999999988753  4567899999999999999999999 8899999999


Q ss_pred             cc
Q 047036          491 TL  492 (634)
Q Consensus       491 ~~  492 (634)
                      +.
T Consensus       294 ~~  295 (337)
T 1gxr_A          294 TP  295 (337)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.90  E-value=4.1e-22  Score=203.20  Aligned_cols=217  Identities=10%  Similarity=0.043  Sum_probs=147.9

Q ss_pred             CcEEEeeeCCCeEEEec--CeeeEEEccCCce-ecceeEEEecCCC-CCcccccCcceeeEEeCCc---ceEEecCCCCC
Q 047036          256 VQSLTLGALDNSFLVSD--LGLQVYRNYNRGI-HNKGVSVRFDGGS-SKIGSNSTPKKALLMRGET---NMMLMSPLKDG  328 (634)
Q Consensus       256 ~~~LavG~~D~sfvv~G--~~igV~k~~~~gl-~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~---~mllsss~d~~  328 (634)
                      ..+.++.+..+.+++.+  ..|.||....... .-......+.+|. ++....|+|+.    ..++   ++|++++.|  
T Consensus        17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~g~~~~~l~s~~~d--   90 (397)
T 1sq9_A           17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI----ERDAFELCLVATTSFS--   90 (397)
T ss_dssp             SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEE----ETTTEEEEEEEEEETT--
T ss_pred             cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEeccc----ccCCccccEEEEEcCC--
Confidence            34677777334333332  5888998755430 0001233444542 22344444441    1115   667777665  


Q ss_pred             CCCCCcEEEEeCCCCcE-----EEEEecc-----CCCcceeEEEEe----cCCCCCCCCCCCE-EEEEeCCCeEEEEEcC
Q 047036          329 KPQAPGVQQLDIETGKI-----VTEWKFE-----KDGTDITMRDIT----NDTKSSQLDPSES-TFLGLDDNRLCQWDMR  393 (634)
Q Consensus       329 ~~~~~TIrlWDleTGK~-----V~~lkgH-----~~~V~I~vvsfs----Pd~K~~q~~~g~~-laSGS~D~tIklWD~R  393 (634)
                          ++|++||+.+++.     +..+.+|     ...|  ..++|+    |+        +.. +++|+.|++|++||++
T Consensus        91 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~--------~~~~l~~~~~dg~i~iwd~~  156 (397)
T 1sq9_A           91 ----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF--WALKWGASNDRL--------LSHRLVATDVKGTTYIWKFH  156 (397)
T ss_dssp             ----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCE--EEEEEECCC------------CEEEEEEETTSCEEEEEEE
T ss_pred             ----CCEEEEEccCCcccccccceeecccccccCCCcE--EEEEEeeccCCC--------CceEEEEEeCCCcEEEEeCC
Confidence                6899999999998     9999999     4655  566999    87        678 9999999999999998


Q ss_pred             C------CCceEE-----ecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccC-
Q 047036          394 D------RSGIVQ-----NMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPG-  461 (634)
Q Consensus       394 ~------~~~~Vq-----~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~G-  461 (634)
                      .      +..+ .     .+.++..        ....+...+.+++++|+|.||+|+.||.|++||+.+.+ ....+.+ 
T Consensus       157 ~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~  226 (397)
T 1sq9_A          157 PFADESNSLTL-NWSPTLELQGTVE--------SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR-PLYNFESQ  226 (397)
T ss_dssp             SSSSHHHHTTT-CCCCEEEEEEEEC--------CSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE-EEEEEECC
T ss_pred             cccccccccee-eccCcceeeeeec--------cccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc-eeEEEecc
Confidence            7      4332 2     2311000        00012345688999998888999999999999998764 6677888 


Q ss_pred             --C---CCCeEEEEECCCCCEEEE-EcC---CcEEEEEcccccCCCCeeeeecC
Q 047036          462 --L---GSPITHVDVTYDGKWILG-TTD---TYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       462 --H---~d~ItsVdfSpDGk~LlS-S~D---~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                        |   ..+|++|+|+|+|++|++ +.|   +.|+|||+.    +++.+..|.+
T Consensus       227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~----~~~~~~~~~~  276 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE----FGERIGSLSV  276 (397)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT----TCCEEEEECB
T ss_pred             ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC----CCcccceecc
Confidence              9   999999999999999999 888   999999986    5777777765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.2e-21  Score=203.87  Aligned_cols=211  Identities=12%  Similarity=0.089  Sum_probs=157.1

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .+.+++++++|++++.|      ++|++||+++++.++++.+|...|  ..++|+          +..+++|+.|++|++
T Consensus       139 ~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~----------~~~l~~~~~dg~i~i  200 (401)
T 4aez_A          139 SVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRTMAGHQARV--GCLSWN----------RHVLSSGSRSGAIHH  200 (401)
T ss_dssp             EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCE--EEEEEE----------TTEEEEEETTSEEEE
T ss_pred             EEEECCCCCEEEEECCC------CeEEEEECcCCeEEEEecCCCCce--EEEEEC----------CCEEEEEcCCCCEEE
Confidence            34444455677777665      689999999999999999999876  344664          469999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      ||++.....+..+.+|..               .+.+++++++| +||+|+.||+|++||+.+. .....+.+|..+|++
T Consensus       201 ~d~~~~~~~~~~~~~~~~---------------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSS---------------EVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKA  264 (401)
T ss_dssp             EETTSSSCEEEEEECCSS---------------CEEEEEECTTSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCE
T ss_pred             EecccCcceeeEEcCCCC---------------CeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEE
Confidence            999966655667765544               36789999998 7999999999999999876 366778899999999


Q ss_pred             EEECCCCCEEEE-E---cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036          469 VDVTYDGKWILG-T---TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE  544 (634)
Q Consensus       469 VdfSpDGk~LlS-S---~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~  544 (634)
                      |+|+|+|..|++ +   .|++|++||+.    +++.+..+..+..               +    ..+.|+|.       
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~~~~~---------------v----~~~~~s~~-------  314 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAA----TGARVNTVDAGSQ---------------V----TSLIWSPH-------  314 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETT----TCCEEEEEECSSC---------------E----EEEEECSS-------
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECC----CCCEEEEEeCCCc---------------E----EEEEECCC-------
Confidence            999999877666 4   49999999986    5666555542210               0    12344433       


Q ss_pred             CCCCceEEEE-E--cCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          545 NGKQERHLVA-T--VGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       545 ~g~~E~~Ivt-S--tg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                       +   ..|++ +  .++.|.+|++..   +...           ..+.+..+...|..+.|
T Consensus       315 -~---~~l~~~~g~~dg~i~v~~~~~---~~~~-----------~~~~~~~h~~~v~~~~~  357 (401)
T 4aez_A          315 -S---KEIMSTHGFPDNNLSIWSYSS---SGLT-----------KQVDIPAHDTRVLYSAL  357 (401)
T ss_dssp             -S---SEEEEEECTTTCEEEEEEEET---TEEE-----------EEEEEECCSSCCCEEEE
T ss_pred             -C---CeEEEEeecCCCcEEEEecCC---ccce-----------eEEEecCCCCCEEEEEE
Confidence             2   34444 3  589999999874   2111           13467788888888887

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=1.5e-21  Score=204.92  Aligned_cols=248  Identities=11%  Similarity=0.100  Sum_probs=173.1

Q ss_pred             CcEEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          256 VQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       256 ~~~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      +|.||||. |+       +|.||....+.+.   ..+.+.+|. .+.+++|+|+        +++|++++.|      ++
T Consensus       116 ~n~lAvgl-d~-------tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspd--------g~~lasgs~D------g~  170 (420)
T 4gga_A          116 GNVLAVAL-DN-------SVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKE--------GNYLAVGTSS------AE  170 (420)
T ss_dssp             TSEEEEEE-TT-------EEEEEETTTCCEE---EEEECCSTTCCEEEEEECTT--------SSEEEEEETT------SC
T ss_pred             CCEEEEEe-CC-------EEEEEECCCCCEE---EEEEecCCCCcEEEEEECCC--------CCEEEEEECC------Ce
Confidence            35777775 44       4566654443211   122233331 2355666655        4566777765      79


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      |++||+++|++++++.+|...|    .+++++        +..+++|+.|+++++||.+.....+..+.+|...      
T Consensus       171 v~iWd~~~~~~~~~~~~h~~~v----~~~s~~--------~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~------  232 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMTSHSARV----GSLSWN--------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE------  232 (420)
T ss_dssp             EEEEETTTTEEEEEECCCSSCE----EEEEEE--------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC------
T ss_pred             EEEEEcCCCcEEEEEeCCCCce----EEEeeC--------CCEEEEEeCCCceeEeeecccceeeEEecccccc------
Confidence            9999999999999999999854    356665        5799999999999999999877667777766543      


Q ss_pred             ccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc---ccccccCCCCCeEEEEECCCCCEEEE----EcCCcE
Q 047036          415 GHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ---AKTAFPGLGSPITHVDVTYDGKWILG----TTDTYL  486 (634)
Q Consensus       415 g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~---akt~L~GH~d~ItsVdfSpDGk~LlS----S~D~tI  486 (634)
                               +.+++++++| +|++|+.||.|+|||..+++.   ....+.+|..+|.+++|+|++..+++    +.|++|
T Consensus       233 ---------~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          233 ---------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             ---------EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred             ---------eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence                     4677889988 899999999999999876531   23456689999999999998876654    259999


Q ss_pred             EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE--cCCeEEEEe
Q 047036          487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT--VGKFSVIWD  564 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS--tg~~viiWd  564 (634)
                      +|||+.    +|+++..+..|..                 .  ..+.|.+.        +  ...++++  .++.|+|||
T Consensus       304 ~iwd~~----t~~~~~~~~~~~~-----------------v--~~~~~~~~--------~--~~lv~~sg~~d~~I~iwd  350 (420)
T 4gga_A          304 RIWNVC----SGACLSAVDAHSQ-----------------V--CSILWSPH--------Y--KELISGHGFAQNQLVIWK  350 (420)
T ss_dssp             EEEETT----TTEEEEEEECSSC-----------------E--EEEEEETT--------T--TEEEEEECTTTCCEEEEE
T ss_pred             EEEeCC----ccccceeeccccc-----------------e--eeeeecCC--------C--CeEEEEEecCCCEEEEEE
Confidence            999986    5766665554431                 0  11223322        2  2344443  578999999


Q ss_pred             ChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036          565 FQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH  604 (634)
Q Consensus       565 l~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~  604 (634)
                      +..   ++.             ...+..|...|..+.|-.
T Consensus       351 ~~~---~~~-------------v~~l~gH~~~V~~l~~sp  374 (420)
T 4gga_A          351 YPT---MAK-------------VAELKGHTSRVLSLTMSP  374 (420)
T ss_dssp             TTT---CCE-------------EEEECCCSSCEEEEEECT
T ss_pred             CCC---CcE-------------EEEEcCCCCCEEEEEEcC
Confidence            863   322             257888999999999833

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.4e-22  Score=205.77  Aligned_cols=249  Identities=12%  Similarity=0.097  Sum_probs=176.5

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ....++.+ +|+.+++.|   ..|.||...... .+......+.+|. .+...+|+|+       +.++|++++.|    
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~l~s~~~d----  135 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN-NAINSMARFSNHSSSVKTVKFNAK-------QDNVLASGGNN----  135 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT-SCCCEEEECCCSSSCCCEEEECSS-------STTBEEEECSS----
T ss_pred             CceEEEEECCCCCeEEEEccCCeEEEeeccccc-ccccchhhccCCccceEEEEEcCC-------CCCEEEEEcCC----
Confidence            34777777 788777765   478899865411 1111334455552 2244444443       15667777765    


Q ss_pred             CCCcEEEEeCCCCc------EE---EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe
Q 047036          331 QAPGVQQLDIETGK------IV---TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN  401 (634)
Q Consensus       331 ~~~TIrlWDleTGK------~V---~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~  401 (634)
                        ++|++||+.+++      ..   ..+.+|...|  ..++|+|++       +.++++|+.|++|++||++.+.. +..
T Consensus       136 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~-------~~~l~~~~~dg~v~iwd~~~~~~-~~~  203 (416)
T 2pm9_A          136 --GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV--ISLAWNQSL-------AHVFASAGSSNFASIWDLKAKKE-VIH  203 (416)
T ss_dssp             --SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC--CEEEECSSC-------TTEEEEESSSSCEEEEETTTTEE-EEE
T ss_pred             --CeEEEEECCCCccccccccccccccccCCCCCe--eEEEeCCCC-------CcEEEEEcCCCCEEEEECCCCCc-ceE
Confidence              799999999987      33   3357898876  456999972       36899999999999999998653 455


Q ss_pred             cccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCC---cEEEEecccccccccccc-CCCCCeEEEEECC-C
Q 047036          402 MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDG---KIRLYSKTSMRQAKTAFP-GLGSPITHVDVTY-D  474 (634)
Q Consensus       402 l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DG---tIRLWD~~t~r~akt~L~-GH~d~ItsVdfSp-D  474 (634)
                      +..|...     .+    +...+.+++++|+|  .||+|+.|+   .|++||+.+.+.....+. +|..+|++|+|+| +
T Consensus       204 ~~~~~~~-----~~----~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (416)
T 2pm9_A          204 LSYTSPN-----SG----IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD  274 (416)
T ss_dssp             ECCCCCS-----SC----CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred             Eeccccc-----cc----cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence            5433210     01    13467899999987  699999999   999999987544667788 9999999999999 9


Q ss_pred             CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEE
Q 047036          475 GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLV  553 (634)
Q Consensus       475 Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Iv  553 (634)
                      |++|++ +.|++|+|||+.    +++.+..|.+|.+..                  ..+.|+|.        +  ...|+
T Consensus       275 ~~~l~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~v------------------~~~~~s~~--------~--~~~l~  322 (416)
T 2pm9_A          275 EHLLLSSGRDNTVLLWNPE----SAEQLSQFPARGNWC------------------FKTKFAPE--------A--PDLFA  322 (416)
T ss_dssp             SSCEEEEESSSEEEEECSS----SCCEEEEEECSSSCC------------------CCEEECTT--------C--TTEEE
T ss_pred             CCeEEEEeCCCCEEEeeCC----CCccceeecCCCCce------------------EEEEECCC--------C--CCEEE
Confidence            999999 889999999986    577777777765311                  23455544        1  13555


Q ss_pred             E-EcCCeEEEEeChhhh
Q 047036          554 A-TVGKFSVIWDFQQVK  569 (634)
Q Consensus       554 t-Stg~~viiWdl~~v~  569 (634)
                      + +.|+.|.+|++....
T Consensus       323 s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          323 CASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             ECCSSSEEEEEESCCCC
T ss_pred             EEecCCcEEEEEccCCC
Confidence            4 779999999997543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=2.2e-21  Score=204.16  Aligned_cols=268  Identities=14%  Similarity=0.201  Sum_probs=185.0

Q ss_pred             EEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          258 SLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       258 ~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      +.++.+ |+.+++.|   ..|.||......     ....+.+|.       .+...+.+  ++++|++++.|      ++
T Consensus       136 v~~~~~-d~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~-------~~v~~l~~--~~~~l~sg~~d------g~  194 (435)
T 1p22_A          136 VYCLQY-DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHT-------GSVLCLQY--DERVIITGSSD------ST  194 (435)
T ss_dssp             EEEEEC-CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCS-------SCEEEEEC--CSSEEEEEETT------SC
T ss_pred             EEEEEE-CCCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCC-------CcEEEEEE--CCCEEEEEcCC------Ce
Confidence            455555 56666654   588899865432     233455552       12233333  56778888775      79


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce--EEecccCCCCcccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI--VQNMVKGDSPVLHW  412 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~--Vq~l~gh~s~V~~~  412 (634)
                      |++||+.+|+++.++.+|...|  ..++|++          ..+++|+.|++|++||++++...  ...+.+|..     
T Consensus       195 i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----  257 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLIHHCEAV--LHLRFNN----------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-----  257 (435)
T ss_dssp             EEEEESSSCCEEEEECCCCSCE--EEEECCT----------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-----
T ss_pred             EEEEECCCCcEEEEEcCCCCcE--EEEEEcC----------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-----
Confidence            9999999999999999999875  3446653          58999999999999999976532  144444443     


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                                .+.++++ .+.+||+|+.||+|++||+.+++ ....+.+|..+|.++++  +|++|++ +.|++|+|||+
T Consensus       258 ----------~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~  323 (435)
T 1p22_A          258 ----------AVNVVDF-DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI  323 (435)
T ss_dssp             ----------CEEEEEE-ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred             ----------cEEEEEe-CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence                      3567777 33489999999999999998874 77889999999999999  5789999 89999999998


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS  571 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~  571 (634)
                      .    +|+++..|.+|....                  ..+.|     +     +  ...++++.|+.|.+||+..-...
T Consensus       324 ~----~~~~~~~~~~h~~~v------------------~~~~~-----~-----~--~~l~sg~~dg~i~vwd~~~~~~~  369 (435)
T 1p22_A          324 E----CGACLRVLEGHEELV------------------RCIRF-----D-----N--KRIVSGAYDGKIKVWDLVAALDP  369 (435)
T ss_dssp             T----TCCEEEEECCCSSCE------------------EEEEC-----C-----S--SEEEEEETTSCEEEEEHHHHTST
T ss_pred             C----CCCEEEEEeCCcCcE------------------EEEEe-----c-----C--CEEEEEeCCCcEEEEECCCCCCc
Confidence            6    688888888775311                  11222     2     2  24555578999999999754321


Q ss_pred             cccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEEE
Q 047036          572 AHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVV  619 (634)
Q Consensus       572 ~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iiv  619 (634)
                      ...      ....| ...+..+...|..+.| .+++.+.++.|..|.|
T Consensus       370 ~~~------~~~~~-~~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          370 RAP------AGTLC-LRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             TSC------TTTTE-EEEECCCSSCCCCEEE-CSSCEEECCSSSEEEE
T ss_pred             ccc------ccchh-eeeccCCCCCeEEEEe-CCCEEEEEeCCCEEEE
Confidence            110      00112 3567888999998888 5555444433444443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.7e-22  Score=201.49  Aligned_cols=277  Identities=13%  Similarity=0.143  Sum_probs=181.1

Q ss_pred             cEEEeee-CCCe-EEEec---CeeeEEEc----cCCceecce-eEEEecC----CCCCcccccCcceeeEEeCCcceEEe
Q 047036          257 QSLTLGA-LDNS-FLVSD---LGLQVYRN----YNRGIHNKG-VSVRFDG----GSSKIGSNSTPKKALLMRGETNMMLM  322 (634)
Q Consensus       257 ~~LavG~-~D~s-fvv~G---~~igV~k~----~~~gl~~~~-~~~~~~~----~~~~~g~~fsP~~~mL~~~D~~mlls  322 (634)
                      ...++.+ +|+. +++.|   ..|.||..    ..+...+.. ....+..    +.. .+..-.+...+.+++++++|++
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~  125 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS-SGKTTNQVTCLAWSHDGNSIVT  125 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-------CBCEEEEEECTTSSEEEE
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc-ccCCCCceEEEEEcCCCCEEEE
Confidence            3556667 6776 77754   57889987    443210000 1111211    000 0001124455666667777888


Q ss_pred             cCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEec
Q 047036          323 SPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       323 ss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l  402 (634)
                      ++.|      ++|++|| .+|+.+..+.+|...|  ..++|+|+        +..+++|+.|++|++||++++. .++.+
T Consensus       126 ~~~d------g~i~i~~-~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~~~~~d~~i~iwd~~~~~-~~~~~  187 (425)
T 1r5m_A          126 GVEN------GELRLWN-KTGALLNVLNFHRAPI--VSVKWNKD--------GTHIISMDVENVTILWNVISGT-VMQHF  187 (425)
T ss_dssp             EETT------SCEEEEE-TTSCEEEEECCCCSCE--EEEEECTT--------SSEEEEEETTCCEEEEETTTTE-EEEEE
T ss_pred             EeCC------CeEEEEe-CCCCeeeeccCCCccE--EEEEECCC--------CCEEEEEecCCeEEEEECCCCc-EEEEe
Confidence            7765      6899999 6799999999999976  46699998        6799999999999999998764 35555


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T  481 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S  481 (634)
                      ..|..................+.++++++++.+++|+.||.|++||+.+. .....+.+|..+|++|+|+|+|++|++ +
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence            44332100000000000111256778888999999999999999999886 366788899999999999999999999 8


Q ss_pred             cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEE
Q 047036          482 TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSV  561 (634)
Q Consensus       482 ~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vi  561 (634)
                      .|++|++||+.    .++.+..|.+|....                  ..+.|+|.        +   ..++++.++.|.
T Consensus       267 ~d~~i~i~d~~----~~~~~~~~~~~~~~i------------------~~~~~~~~--------~---~l~~~~~d~~i~  313 (425)
T 1r5m_A          267 DDGTLRIWHGG----NGNSQNCFYGHSQSI------------------VSASWVGD--------D---KVISCSMDGSVR  313 (425)
T ss_dssp             TTSCEEEECSS----SBSCSEEECCCSSCE------------------EEEEEETT--------T---EEEEEETTSEEE
T ss_pred             CCCEEEEEECC----CCccceEecCCCccE------------------EEEEECCC--------C---EEEEEeCCCcEE
Confidence            89999999976    455555555443210                  12334333        2   455668899999


Q ss_pred             EEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          562 IWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       562 iWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      +||+..   ++.             ...+..+...|..+.|
T Consensus       314 i~d~~~---~~~-------------~~~~~~~~~~i~~~~~  338 (425)
T 1r5m_A          314 LWSLKQ---NTL-------------LALSIVDGVPIFAGRI  338 (425)
T ss_dssp             EEETTT---TEE-------------EEEEECTTCCEEEEEE
T ss_pred             EEECCC---CcE-------------eEecccCCccEEEEEE
Confidence            999863   222             1356667778887777

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=1.1e-22  Score=214.66  Aligned_cols=154  Identities=9%  Similarity=0.064  Sum_probs=118.6

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      .+.+|+|.       +.++|++++.|      ++|++||+.+++  .+.++.||.+.|  ..++|+|..       +.+|
T Consensus       123 ~~l~~~P~-------~~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH~~~V--~~l~f~p~~-------~~~l  180 (435)
T 4e54_B          123 TSLAWHPT-------HPSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGAGGSI--TGLKFNPLN-------TNQF  180 (435)
T ss_dssp             EEEEECSS-------CTTCEEEEETT------SCEEEECSSCCSCCEEECCCSSSCCC--CEEEECSSC-------TTEE
T ss_pred             EEEEEeCC-------CCCEEEEEeCC------CEEEEEECCCCCceeEEEccCCCCCE--EEEEEeCCC-------CCEE
Confidence            44555553       34567777765      799999998875  455677999987  456999841       5799


Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT  457 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt  457 (634)
                      +|||.|++|++||++.+.  ++.+..+..            ....+.+++++++| +||+|+.||+|+|||+.+ + ...
T Consensus       181 ~s~s~D~~v~iwd~~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~-~~~  244 (435)
T 4e54_B          181 YASSMEGTTRLQDFKGNI--LRVFASSDT------------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-K-ELW  244 (435)
T ss_dssp             EEECSSSCEEEEETTSCE--EEEEECCSS------------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-C-BCC
T ss_pred             EEEeCCCEEEEeeccCCc--eeEEeccCC------------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-c-eeE
Confidence            999999999999998642  233322211            12345678899998 899999999999999876 3 567


Q ss_pred             cccCCCCCeEEEEECCCCCE-EEE-EcCCcEEEEEcc
Q 047036          458 AFPGLGSPITHVDVTYDGKW-ILG-TTDTYLILICTL  492 (634)
Q Consensus       458 ~L~GH~d~ItsVdfSpDGk~-LlS-S~D~tIrLWD~~  492 (634)
                      .+.+|..+|++|+|+|+|.+ |++ +.|++|+|||++
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~  281 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR  281 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence            88999999999999999985 556 789999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=8.9e-22  Score=192.76  Aligned_cols=215  Identities=10%  Similarity=0.044  Sum_probs=149.6

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ..+.++.+ +|+.+++.|   ..|.||......... .....+.+|. ++.+.+|+|.      .++++|++++.|    
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~------~d~~~l~s~~~d----   80 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-ELSDSWRAHDSSIVAIDWASP------EYGRIIASASYD----   80 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-EEEEEEECCSSCEEEEEECCG------GGCSEEEEEETT----
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-eecceeccCCCcEEEEEEcCC------CCCCEEEEEcCC----
Confidence            34777888 788877765   479999875543111 1233444552 2244444442      145677777765    


Q ss_pred             CCCcEEEEeCCCC---------cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe
Q 047036          331 QAPGVQQLDIETG---------KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN  401 (634)
Q Consensus       331 ~~~TIrlWDleTG---------K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~  401 (634)
                        ++|++||+.++         +.+..+.+|...|  ..++|+|+..      +..+++|+.|++|++||++.+..+ +.
T Consensus        81 --g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~------~~~l~~~~~dg~v~iwd~~~~~~~-~~  149 (351)
T 3f3f_A           81 --KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL--YSVKFAPAHL------GLKLACLGNDGILRLYDALEPSDL-RS  149 (351)
T ss_dssp             --SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE--EEEEECCGGG------CSEEEEEETTCEEEEEECSSTTCT-TC
T ss_pred             --CeEEEEecCCCcccccccCcceeeeecccCCce--eEEEEcCCCC------CcEEEEecCCCcEEEecCCChHHh-cc
Confidence              79999999998         7799999999976  4669999722      368999999999999999875421 11


Q ss_pred             cc-------------cCCCCcc------------------------ccc--ccc-----cc-ccCcceEEEEECCCC---
Q 047036          402 MV-------------KGDSPVL------------------------HWT--QGH-----QF-SRGTNFQCFASTGDG---  433 (634)
Q Consensus       402 l~-------------gh~s~V~------------------------~~~--~g~-----~y-~~~~~fssva~s~dG---  433 (634)
                      +.             +|...+.                        .|.  .+.     .+ .+...+.+++++|+|   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence            10             1110000                        000  000     00 134568999999996   


Q ss_pred             --eEEEEECCCcEEEEeccccc---------------------------------------------cccccccCCCCCe
Q 047036          434 --SIVVGSLDGKIRLYSKTSMR---------------------------------------------QAKTAFPGLGSPI  466 (634)
Q Consensus       434 --~IASGS~DGtIRLWD~~t~r---------------------------------------------~akt~L~GH~d~I  466 (634)
                        +||+|+.||+|+|||+....                                             .....+.+|..+|
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV  309 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence              69999999999999987531                                             2445678999999


Q ss_pred             EEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          467 THVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       467 tsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ++|+|+|||++|++ +.|++|+|||+.
T Consensus       310 ~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          310 WSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            99999999999999 899999999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=4.8e-22  Score=211.36  Aligned_cols=179  Identities=14%  Similarity=0.102  Sum_probs=130.7

Q ss_pred             CCCcEEEEeC-CCCcEEEEEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          331 QAPGVQQLDI-ETGKIVTEWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       331 ~~~TIrlWDl-eTGK~V~~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                      |+++|++|++ .+|+.+.++.+|...|  .+++|+| ++.      ++.|+|||.|++||+||++++++ +++|.+|...
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v--~~l~fs~~~g~------~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~  225 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEE--TILTFAEVQGM------QEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSY  225 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSS--CEEEEEEEETS------TTEEEEEETTSEEEEEETTTCCE-EEEEECCC--
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCce--eeEEeeccCCC------CceEEEecCCCcEEEEECCCCcE-EEEEcCCCcc
Confidence            5589999999 6699999999999987  4778998 311      58999999999999999998764 6788654332


Q ss_pred             ccccccccccccCcceEEEEECCCC-eE------------EEEECCCcEEEEeccccccccccc-----cCCCCCeEEEE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SI------------VVGSLDGKIRLYSKTSMRQAKTAF-----PGLGSPITHVD  470 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~I------------ASGS~DGtIRLWD~~t~r~akt~L-----~GH~d~ItsVd  470 (634)
                      +            ..+.+++|+|+| +|            |+|+.|++|||||..+++ ....+     .||...+.+.+
T Consensus       226 v------------~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~  292 (356)
T 2w18_A          226 Q------------ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGD  292 (356)
T ss_dssp             -------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEE
T ss_pred             e------------eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEccc
Confidence            1            135677888888 33            789999999999998864 33332     38887766666


Q ss_pred             ECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCc
Q 047036          471 VTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQE  549 (634)
Q Consensus       471 fSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E  549 (634)
                      ++  |.++|| +.|++|+|||+.    +|+++.+|.+|....               .  ..+.|+|+        |   
T Consensus       293 ~s--g~~lASgS~DgTIkIWDl~----tGk~l~tL~gH~~~v---------------v--s~vafSPD--------G---  338 (356)
T 2w18_A          293 VK--DHCAAAILTSGTIAIWDLL----LGQCTALLPPVSDQH---------------W--SFVKWSGT--------D---  338 (356)
T ss_dssp             EE--TTEEEEEETTSCEEEEETT----TCSEEEEECCC--CC---------------C--CEEEECSS--------S---
T ss_pred             cC--CCEEEEEcCCCcEEEEECC----CCcEEEEecCCCCCe---------------E--EEEEECCC--------C---
Confidence            55  999999 899999999986    799999999886421               0  11345554        4   


Q ss_pred             eEEEE-EcCCeEEEEeC
Q 047036          550 RHLVA-TVGKFSVIWDF  565 (634)
Q Consensus       550 ~~Ivt-Stg~~viiWdl  565 (634)
                      ++|++ |.|+.|+|||+
T Consensus       339 ~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECTTSCEEEEEE
T ss_pred             CEEEEEECCCcEEEecC
Confidence            45655 77999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=3e-21  Score=202.67  Aligned_cols=248  Identities=13%  Similarity=0.136  Sum_probs=171.5

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEe--CCcceEEecCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMR--GETNMMLMSPLKDGK  329 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~--~D~~mllsss~d~~~  329 (634)
                      ....++.+ +++ +++.|   ..|.||....+.     ....+.+|.       .+...+.+.  .++++|++++.|   
T Consensus       163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~-------~~v~~l~~~~~~~~~~l~s~s~d---  226 (464)
T 3v7d_B          163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----CTHVFEGHN-------STVRCLDIVEYKNIKYIVTGSRD---  226 (464)
T ss_dssp             SCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----EEEEECCCS-------SCEEEEEEEESSSCEEEEEEETT---
T ss_pred             cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----EEEEECCCC-------CccEEEEEecCCCCCEEEEEcCC---
Confidence            34666776 555 44433   478888865432     233444442       222223333  456777887765   


Q ss_pred             CCCCcEEEEeCCCCc-----------------------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          330 PQAPGVQQLDIETGK-----------------------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       330 ~~~~TIrlWDleTGK-----------------------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                         ++|++||+.+++                       ++..+.+|...|    .+++|+        +..+++|+.|++
T Consensus       227 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~--------~~~l~~~~~d~~  291 (464)
T 3v7d_B          227 ---NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV----RTVSGH--------GNIVVSGSYDNT  291 (464)
T ss_dssp             ---SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE----EEEEEE--------TTEEEEEETTSC
T ss_pred             ---CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE----EEEcCC--------CCEEEEEeCCCe
Confidence               799999999887                       477889998754    467777        679999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP  465 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~  465 (634)
                      |++||++++. ++..+.+|..               .+.+++++++| +||+|+.||+|++||+.+++ ....+.+|..+
T Consensus       292 i~vwd~~~~~-~~~~~~~~~~---------------~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~  354 (464)
T 3v7d_B          292 LIVWDVAQMK-CLYILSGHTD---------------RIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQGHTAL  354 (464)
T ss_dssp             EEEEETTTTE-EEEEECCCSS---------------CEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECCCSSC
T ss_pred             EEEEECCCCc-EEEEecCCCC---------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCCc
Confidence            9999999765 4566765544               35788999998 89999999999999998874 77889999999


Q ss_pred             eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036          466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE  544 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~  544 (634)
                      |++|+|+  |++|++ +.|++|++||+.    ++.....+  +.              .+..   ..+.|.+.       
T Consensus       355 v~~~~~~--~~~l~s~s~dg~v~vwd~~----~~~~~~~~--~~--------------~~~~---~~~~~~~~-------  402 (464)
T 3v7d_B          355 VGLLRLS--DKFLVSAAADGSIRGWDAN----DYSRKFSY--HH--------------TNLS---AITTFYVS-------  402 (464)
T ss_dssp             EEEEEEC--SSEEEEEETTSEEEEEETT----TCCEEEEE--EC--------------TTCC---CEEEEEEC-------
T ss_pred             EEEEEEc--CCEEEEEeCCCcEEEEECC----CCceeeee--cC--------------CCCc---cEEEEEeC-------
Confidence            9999998  689998 999999999975    33322211  11              0000   11233332       


Q ss_pred             CCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          545 NGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       545 ~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                       +   ..|+++.++.|.+||++.   |++-.            -.+..+...|.++.|
T Consensus       403 -~---~~l~~~~dg~i~iwd~~~---g~~~~------------~~~~~~~~~v~~v~~  441 (464)
T 3v7d_B          403 -D---NILVSGSENQFNIYNLRS---GKLVH------------ANILKDADQIWSVNF  441 (464)
T ss_dssp             -S---SEEEEEETTEEEEEETTT---CCEEE------------SCTTTTCSEEEEEEE
T ss_pred             -C---CEEEEecCCeEEEEECCC---CcEEe------------hhhccCCCcEEEEEe
Confidence             3   577777799999999974   33210            013445677887777

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=1.3e-22  Score=215.68  Aligned_cols=158  Identities=12%  Similarity=0.105  Sum_probs=106.7

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcc-eeEEEEecCCCCCCC---C-CCCEEEEEeCCCeEEE
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTD-ITMRDITNDTKSSQL---D-PSESTFLGLDDNRLCQ  389 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~-I~vvsfsPd~K~~q~---~-~g~~laSGS~D~tIkl  389 (634)
                      +++.+|++++.|      +|||+||+.||+++++|.+|...+. +..++|+|+++.--.   + ....++||+.|++|++
T Consensus       191 g~~~~LaSgS~D------~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          191 GMQEALLGTTIM------NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             TSTTEEEEEETT------SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             CCCceEEEecCC------CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence            467788888776      7999999999999999998654321 234589998542100   0 0013578999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeE-E
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT-H  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It-s  468 (634)
                      ||++++.. +..+.-.      ...||.    ..+.+..++ +-.+|+||.||+|||||+.+++ +..+|.||.+.|. +
T Consensus       265 Wd~~tgk~-l~v~~~~------~p~Gh~----~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk-~l~tL~gH~~~vvs~  331 (356)
T 2w18_A          265 INPKTTLS-VGVMLYC------LPPGQA----GRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQ-CTALLPPVSDQHWSF  331 (356)
T ss_dssp             EETTTTEE-EEEEEEC------CCTTCC----CCEEEEEEE-TTEEEEEETTSCEEEEETTTCS-EEEEECCC--CCCCE
T ss_pred             EECCCCEE-EEEEEee------ccCCCc----ceeEccccC-CCEEEEEcCCCcEEEEECCCCc-EEEEecCCCCCeEEE
Confidence            99998653 3433100      001221    113444444 2379999999999999999974 7888999998766 5


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEc
Q 047036          469 VDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      |+|||||++|+| +.|++|||||+
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEecC
Confidence            999999999999 89999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.1e-21  Score=188.95  Aligned_cols=230  Identities=11%  Similarity=0.122  Sum_probs=165.2

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++.+ +++.+++.|   ..|.+|...... .. .....+.+|.       .+...+.+  +.++|++++.|      
T Consensus        61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-~~-~~~~~~~~~~-------~~i~~~~~--~~~~l~~~~~d------  123 (313)
T 3odt_A           61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATS-GE-DPLYTLIGHQ-------GNVCSLSF--QDGVVISGSWD------  123 (313)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTCCT-TS-CC-CEECCCS-------SCEEEEEE--ETTEEEEEETT------
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEeeecC-CC-Ccccchhhcc-------cCEEEEEe--cCCEEEEEeCC------
Confidence            4666676 677766654   467788764421 00 1122333331       22333333  45677777765      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|++||  +++.+..+.+|...|  ..++|.| +        +..+++|+.|++|++||.+   ..+..+..+      
T Consensus       124 ~~i~~~d--~~~~~~~~~~~~~~v--~~~~~~~~~--------~~~l~~~~~d~~i~i~d~~---~~~~~~~~~------  182 (313)
T 3odt_A          124 KTAKVWK--EGSLVYNLQAHNASV--WDAKVVSFS--------ENKFLTASADKTIKLWQND---KVIKTFSGI------  182 (313)
T ss_dssp             SEEEEEE--TTEEEEEEECCSSCE--EEEEEEETT--------TTEEEEEETTSCEEEEETT---EEEEEECSS------
T ss_pred             CCEEEEc--CCcEEEecccCCCce--eEEEEccCC--------CCEEEEEECCCCEEEEecC---ceEEEEecc------
Confidence            7999999  789999999999976  3457777 5        5799999999999999953   234444320      


Q ss_pred             cccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                              ....+.++++++++.|++|+.||.|++||+.+++ ....+.+|..+|++|+|+|+|+ |++ +.|++|++||
T Consensus       183 --------~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd  252 (313)
T 3odt_A          183 --------HNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWS  252 (313)
T ss_dssp             --------CSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEEC
T ss_pred             --------CcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-hhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEE
Confidence                    2334788999999999999999999999998764 7778899999999999999996 556 9999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      +.    +++.+..+.+|.+..                  ..+.|+|.        +   +.|+++.|+.|.+|+++.
T Consensus       253 ~~----~~~~~~~~~~~~~~i------------------~~~~~~~~--------~---~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          253 KE----NGSLKQVITLPAISI------------------WSVDCMSN--------G---DIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             TT----TCCEEEEEECSSSCE------------------EEEEECTT--------S---CEEEEETTSCEEEEESCG
T ss_pred             CC----CCceeEEEeccCceE------------------EEEEEccC--------C---CEEEEeCCCcEEEEeCCC
Confidence            86    577777676654210                  12344443        3   477788999999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.5e-22  Score=199.63  Aligned_cols=203  Identities=9%  Similarity=0.059  Sum_probs=145.0

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCC--CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE--TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDle--TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      .+.++.++++|++++.|      ++|++||+.  +++++..+.+|...|  ..++|+|+..      +.+|++|+.|++|
T Consensus        16 ~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~------~~~l~s~~~dg~v   81 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKF------GTILASCSYDGKV   81 (379)
T ss_dssp             EEEECSSSSEEEEEETT------SCEEEEEEETTEEEEEEEECCCSSCE--EEEEECCGGG------CSEEEEEETTSCE
T ss_pred             EEEEcCCCCEEEEEECC------CcEEEEecCCCcceeeeEecCCCCcE--EEEEeCCCCC------CCEEEEeccCCEE
Confidence            33344455667777665      699999998  788999999999976  4569987521      4799999999999


Q ss_pred             EEEEcCCCCc-eEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEecccccc-ccccccCC
Q 047036          388 CQWDMRDRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQ-AKTAFPGL  462 (634)
Q Consensus       388 klWD~R~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~-akt~L~GH  462 (634)
                      ++||++.+.. .+..+.+|.               ..+.+++++|+  | +|++|+.||+|++||+.+... ....+.+|
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  146 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHS---------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH  146 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCS---------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred             EEEEcCCCceeEeeeecCCC---------------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence            9999997641 344444333               34689999998  7 799999999999999876521 23467799


Q ss_pred             CCCeEEEEECC-------------CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc
Q 047036          463 GSPITHVDVTY-------------DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA  528 (634)
Q Consensus       463 ~d~ItsVdfSp-------------DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~  528 (634)
                      ..+|++|+|+|             ||++|++ +.|++|+|||++........+..+.+|.+.                  
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~------------------  208 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW------------------  208 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC------------------
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc------------------
Confidence            99999999999             7999999 899999999986311111223334444320                  


Q ss_pred             CCCcccccccccccccCCCCceEEE-EEcCCeEEEEeChh
Q 047036          529 GTDNKIHGGHFSWVTENGKQERHLV-ATVGKFSVIWDFQQ  567 (634)
Q Consensus       529 g~~i~Ft~a~Fs~~t~~g~~E~~Iv-tStg~~viiWdl~~  567 (634)
                      ...+.|+|...        ....|+ ++.|+.|.+||+..
T Consensus       209 v~~~~~sp~~~--------~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          209 VRDVAWSPTVL--------LRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             EEEEEECCCCS--------SSEEEEEEETTSCEEEEEESS
T ss_pred             EeEEEECCCCC--------CCCeEEEEeCCCEEEEEeCCC
Confidence            01244444311        013454 47799999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=2.5e-21  Score=192.33  Aligned_cols=204  Identities=16%  Similarity=0.190  Sum_probs=149.4

Q ss_pred             EecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC-----cEEEEEeccCCCcceeEEEEecC
Q 047036          293 RFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG-----KIVTEWKFEKDGTDITMRDITND  366 (634)
Q Consensus       293 ~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG-----K~V~~lkgH~~~V~I~vvsfsPd  366 (634)
                      +|.||. ++.+++|+|+.       +++|++++.|      ++|++||+.++     ..++.+++|...|  ..++|+|+
T Consensus        33 tL~GH~~~V~~v~~sp~~-------~~~l~S~s~D------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V--~~~~~s~d   97 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQF-------PDMILSASRD------KTIIMWKLTRDETNYGIPQRALRGHSHFV--SDVVISSD   97 (340)
T ss_dssp             EECCCSSCEEEEEECTTC-------TTEEEEEETT------SCEEEEEECCSSSCSEEEEEEECCCSSCE--EEEEECTT
T ss_pred             EECCccCCEEEEEEeCCC-------CCEEEEEcCC------CeEEEEECCCCCcccceeeEEEeCCCCCE--EEEEECCC
Confidence            356663 23556666652       3567777775      79999998765     4678899999986  56799998


Q ss_pred             CCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEE
Q 047036          367 TKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIR  445 (634)
Q Consensus       367 ~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIR  445 (634)
                              +..|++|+.|+.|++|+...... ......+               .....++++++++ +||+|+.||.|+
T Consensus        98 --------g~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~---------------~~~~~~~~~~~~~~~l~s~s~d~~~~  153 (340)
T 4aow_A           98 --------GQFALSGSWDGTLRLWDLTTGTT-TRRFVGH---------------TKDVLSVAFSSDNRQIVSGSRDKTIK  153 (340)
T ss_dssp             --------SSEEEEEETTSEEEEEETTTTEE-EEEEECC---------------SSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             --------CCEEEEEcccccceEEeecccce-eeeecCC---------------CCceeEEEEeecCccceeecCCCeEE
Confidence                    68999999999999999987543 2222211               2234566778877 899999999999


Q ss_pred             EEeccccccccccccCCCCCeEEEEECCCC--CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecC
Q 047036          446 LYSKTSMRQAKTAFPGLGSPITHVDVTYDG--KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTP  522 (634)
Q Consensus       446 LWD~~t~r~akt~L~GH~d~ItsVdfSpDG--k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~P  522 (634)
                      +||..........+.+|...|..++|++++  .++++ +.|++|++||+.    .++.+..|.+|.+..           
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v-----------  218 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYL-----------  218 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCE-----------
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcE-----------
Confidence            999876443445678999999999999887  45677 889999999986    577777777775311           


Q ss_pred             CCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          523 LDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       523 e~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                             ..+.|+|.        |  ...++++.|+.|++||+..
T Consensus       219 -------~~~~~s~~--------~--~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          219 -------NTVTVSPD--------G--SLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             -------EEEEECTT--------S--SEEEEEETTCEEEEEETTT
T ss_pred             -------EEEEECCC--------C--CEEEEEeCCCeEEEEEecc
Confidence                   12444443        3  2344557899999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=6.2e-22  Score=201.87  Aligned_cols=212  Identities=12%  Similarity=0.042  Sum_probs=152.5

Q ss_pred             cEEEeee-CC----C---eEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEe----CCcce-E
Q 047036          257 QSLTLGA-LD----N---SFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMR----GETNM-M  320 (634)
Q Consensus       257 ~~LavG~-~D----~---sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~----~D~~m-l  320 (634)
                      ...++.+ ++    +   .+++.|   ..|.+|.........+.....+..|...  ..-.+...+.+.    +++++ |
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD--MKKHSFWALKWGASNDRLLSHRL  141 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT--GGGSCEEEEEEECCC----CEEE
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc--cCCCcEEEEEEeeccCCCCceEE
Confidence            4666666 56    6   666654   5788888654431101012334443100  001334445555    66677 7


Q ss_pred             EecCCCCCCCCCCcEEEEeCCC------CcEEE-----EEec-------cCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          321 LMSPLKDGKPQAPGVQQLDIET------GKIVT-----EWKF-------EKDGTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       321 lsss~d~~~~~~~TIrlWDleT------GK~V~-----~lkg-------H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      ++++.|      ++|++||+.+      ++.+.     ++.+       |...|  ..++|+|+        + .+++|+
T Consensus       142 ~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~--------~-~l~~~~  204 (397)
T 1sq9_A          142 VATDVK------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA--TSVDISER--------G-LIATGF  204 (397)
T ss_dssp             EEEETT------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC--CEEEECTT--------S-EEEEEC
T ss_pred             EEEeCC------CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc--eEEEECCC--------c-eEEEEe
Confidence            777665      7899999999      88888     8865       77765  46699998        7 999999


Q ss_pred             CCCeEEEEEcCCCCceEEeccc---CCCCccccccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccc
Q 047036          383 DDNRLCQWDMRDRSGIVQNMVK---GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQA  455 (634)
Q Consensus       383 ~D~tIklWD~R~~~~~Vq~l~g---h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~a  455 (634)
                      .|++|++||++.+. .+..+.+   |..            ....+.+++++|+| +||+|+.|   |.|+|||+.+++ .
T Consensus       205 ~dg~i~i~d~~~~~-~~~~~~~~~~h~~------------~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~  270 (397)
T 1sq9_A          205 NNGTVQISELSTLR-PLYNFESQHSMIN------------NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-R  270 (397)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCC---C------------CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-E
T ss_pred             CCCcEEEEECCCCc-eeEEEeccccccc------------cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-c
Confidence            99999999999754 4566654   300            02346899999998 79999999   999999998764 6


Q ss_pred             cccccC-------------CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          456 KTAFPG-------------LGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       456 kt~L~G-------------H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      ...+.+             |..+|++|+|+|||++|++ +.|++|+|||+.    .++.+..|.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~  330 (397)
T 1sq9_A          271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK----TKERITTLN  330 (397)
T ss_dssp             EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TTEEEEEEE
T ss_pred             cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC----CCceeEEEe
Confidence            777888             9999999999999999999 889999999986    677888887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.6e-22  Score=202.48  Aligned_cols=223  Identities=6%  Similarity=0.035  Sum_probs=157.1

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC----CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET----GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT----GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      ...+.+++++++|++++.|      ++|++||+.+    .+.+..+.+|...|  ..++|+|++       +.++++|+.
T Consensus        70 v~~~~~s~~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~-------~~~l~s~~~  134 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGALDN------GSLELYSTNEANNAINSMARFSNHSSSV--KTVKFNAKQ-------DNVLASGGN  134 (416)
T ss_dssp             EEEEEECSSSSCEEEEESS------SCEEEECCSSTTSCCCEEEECCCSSSCC--CEEEECSSS-------TTBEEEECS
T ss_pred             eEEEEECCCCCeEEEEccC------CeEEEeecccccccccchhhccCCccce--EEEEEcCCC-------CCEEEEEcC
Confidence            3444555666777777765      6899999998    46999999999987  456999972       468999999


Q ss_pred             CCeEEEEEcCCCC------ceEEecccCCCCccccccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccc
Q 047036          384 DNRLCQWDMRDRS------GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQA  455 (634)
Q Consensus       384 D~tIklWD~R~~~------~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~a  455 (634)
                      |++|++||++.+.      .. ..+.            ....+...+.+++++++ + .||+|+.||.|+|||+.+++ .
T Consensus       135 dg~v~iwd~~~~~~~~~~~~~-~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~  200 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPSNYTP-LTPG------------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-E  200 (416)
T ss_dssp             SSCEEBCBTTTTSSCTTTCCC-BCCC------------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-E
T ss_pred             CCeEEEEECCCCccccccccc-cccc------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-c
Confidence            9999999999765      21 1110            00112335678999998 4 79999999999999998764 5


Q ss_pred             cccccCC------CCCeEEEEECCCC-CEEEE-EcCC---cEEEEEcccccCCCCeeeeec-CCCCCCCCCceeEeecCC
Q 047036          456 KTAFPGL------GSPITHVDVTYDG-KWILG-TTDT---YLILICTLFSDKDGKTKTGFS-GRMGNKIPAPRLLKLTPL  523 (634)
Q Consensus       456 kt~L~GH------~d~ItsVdfSpDG-k~LlS-S~D~---tIrLWD~~~~~~~G~~~~gF~-gh~~~~~p~pr~L~L~Pe  523 (634)
                      ...+..|      ..+|++|+|+|+| .+|++ +.|+   +|++||++.   ..+.+..|. +|...             
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~---~~~~~~~~~~~~~~~-------------  264 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN---ANTPLQTLNQGHQKG-------------  264 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS---TTSCSBCCCSCCSSC-------------
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC---CCCCcEEeecCccCc-------------
Confidence            5566655      8999999999998 57777 7787   999999862   123344444 44321             


Q ss_pred             CccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          524 DSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       524 ~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                           ...+.|+|.     .  +  ...++++.|+.|.+||+..   ++.             ...+..+...|..+.|-
T Consensus       265 -----v~~~~~s~~-----~--~--~~l~s~~~dg~v~~wd~~~---~~~-------------~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          265 -----ILSLDWCHQ-----D--E--HLLLSSGRDNTVLLWNPES---AEQ-------------LSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             -----EEEEEECSS-----C--S--SCEEEEESSSEEEEECSSS---CCE-------------EEEEECSSSCCCCEEEC
T ss_pred             -----eeEEEeCCC-----C--C--CeEEEEeCCCCEEEeeCCC---Ccc-------------ceeecCCCCceEEEEEC
Confidence                 012444442     0  2  2345557799999999873   222             25677888889888884


Q ss_pred             cC
Q 047036          604 HD  605 (634)
Q Consensus       604 ~d  605 (634)
                      .+
T Consensus       315 ~~  316 (416)
T 2pm9_A          315 PE  316 (416)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=1.2e-20  Score=185.56  Aligned_cols=211  Identities=12%  Similarity=0.113  Sum_probs=150.6

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +.+++++++|++++.|      ++|++||+++|++++++.+|...+    .+++++        +..+++|+.++.+++|
T Consensus        73 v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~~h~~~~----~~~~~~--------~~~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           73 VAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNMTSHSARV----GSLSWN--------SYILSSGSRSGHIHHH  134 (318)
T ss_dssp             EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCE----EEEEEE--------TTEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEECC------CcEEEeecCCceeEEEecCccceE----EEeecC--------CCEEEEEecCCceEee
Confidence            3344455677777765      799999999999999999999753    466665        5799999999999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc---ccccccCCCCCe
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ---AKTAFPGLGSPI  466 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~---akt~L~GH~d~I  466 (634)
                      +.......+..+.+|...               +.+++++++| +|++|+.||+|+|||+.+++.   .......|..+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  199 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQE---------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  199 (318)
T ss_dssp             ETTSSSCEEEEEECCSSC---------------EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred             ecCCCceeEEEEcCccCc---------------eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence            999876666777665543               4677888888 799999999999999887532   223455788999


Q ss_pred             EEEEECCCCCEEE---E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036          467 THVDVTYDGKWIL---G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV  542 (634)
Q Consensus       467 tsVdfSpDGk~Ll---S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~  542 (634)
                      .+++++|++..++   + +.+++|+|||..    .+.....+..+.               .+    ..+.|.+.     
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~~~~~~~~~---------------~v----~~~~~~~~-----  251 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAHS---------------QV----CSILWSPH-----  251 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETT----TCCEEEEEECSS---------------CE----EEEEEETT-----
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEecc----ccccccccccee---------------ee----eeeeeccc-----
Confidence            9999999987665   3 468999999975    233222111110               00    11233322     


Q ss_pred             ccCCCCceEEEEE--cCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          543 TENGKQERHLVAT--VGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       543 t~~g~~E~~IvtS--tg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                         +  ...++++  .++.|+|||+..   ++.             ...+..|.+.|.++.|-
T Consensus       252 ---~--~~~~~~sg~~d~~i~iwd~~~---~~~-------------~~~l~gH~~~V~~l~~s  293 (318)
T 4ggc_A          252 ---Y--KELISGHGFAQNQLVIWKYPT---MAK-------------VAELKGHTSRVLSLTMS  293 (318)
T ss_dssp             ---T--TEEEEEECTTTCCEEEEETTT---CCE-------------EEEECCCSSCEEEEEEC
T ss_pred             ---c--cceEEEEEcCCCEEEEEECCC---CcE-------------EEEEcCCCCCEEEEEEc
Confidence               2  2344443  589999999873   332             25788899999999983

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=4.2e-21  Score=198.40  Aligned_cols=199  Identities=11%  Similarity=0.057  Sum_probs=130.8

Q ss_pred             CCcEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceE-EecCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMM-LMSPLKDGKP  330 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~ml-lsss~d~~~~  330 (634)
                      ...+.++++ +|+++++.|  +.+.||......     .......         .....+.+..+.+++ ++++.+    
T Consensus        19 ~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d----   80 (355)
T 3vu4_A           19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA-----HIMSQEM---------RHLSKVRMLHRTNYVAFVTGVK----   80 (355)
T ss_dssp             CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE-----EEEEEEC---------SCCCEEEECTTSSEEEEECSST----
T ss_pred             CCceEEEEECCCCCEEEEEcCCEEEEEecCCcc-----eeeeeec---------CCeEEEEEcCCCCEEEEEECCc----
Confidence            345778888 899888876  567788854422     1111110         112223333444555 445443    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCC---------CCCCC------------------CEEEE--E
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSS---------QLDPS------------------ESTFL--G  381 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~---------q~~~g------------------~~laS--G  381 (634)
                        ++|++||+.+|+++.++..+. .|  ..++|+|+....         .+..+                  ..++.  |
T Consensus        81 --~~v~iWd~~~~~~~~~~~~~~-~v--~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg  155 (355)
T 3vu4_A           81 --EVVHIWDDVKKQDVSRIKVDA-PV--KDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNE  155 (355)
T ss_dssp             --TEEEEEETTTTEEEEEEECSS-CE--EEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEES
T ss_pred             --cEEEEEECCCCcEEEEEECCC-ce--EEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCC
Confidence              699999999999999998544 44  445777641000         00000                  12222  4


Q ss_pred             eCCCeEEEEEcCCCCc--------------e-EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCc-E
Q 047036          382 LDDNRLCQWDMRDRSG--------------I-VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGK-I  444 (634)
Q Consensus       382 S~D~tIklWD~R~~~~--------------~-Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGt-I  444 (634)
                      +.|++|++||++.+..              + ++.+.+|               ...+.+++++|+| +||+||.||+ |
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h---------------~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH---------------TNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCC---------------SSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEcc---------------CCceEEEEECCCCCEEEEEeCCCCEE
Confidence            5666666666654320              0 2333333               3357899999999 7999999999 9


Q ss_pred             EEEecccccccccccc-C-CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          445 RLYSKTSMRQAKTAFP-G-LGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       445 RLWD~~t~r~akt~L~-G-H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ||||+.+++ ....|. | |..+|++|+|||||++|++ +.|++|+|||+.
T Consensus       221 ~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          221 RVFKTEDGV-LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             EEEETTTCC-EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EEEECCCCc-EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            999998874 667777 6 9999999999999999999 899999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=3.3e-21  Score=197.39  Aligned_cols=194  Identities=10%  Similarity=0.034  Sum_probs=142.4

Q ss_pred             eCCc-ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          314 RGET-NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       314 ~~D~-~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +.++ ++|++++.|      ++|++||+.+++....+.  +|...|  ..++|+|+.       +..+++|+.|++|++|
T Consensus        82 ~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~~~~~-------~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           82 HPTHPTTVAVGSKG------GDIILWDYDVQNKTSFIQGMGPGDAI--TGMKFNQFN-------TNQLFVSSIRGATTLR  146 (383)
T ss_dssp             CSSCTTEEEEEEBT------SCEEEEETTSTTCEEEECCCSTTCBE--EEEEEETTE-------EEEEEEEETTTEEEEE
T ss_pred             CCCCCCEEEEEcCC------CeEEEEeCCCcccceeeecCCcCCce--eEEEeCCCC-------CCEEEEEeCCCEEEEE
Confidence            3344 566677665      799999999999988886  698876  466999941       5799999999999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEE
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsV  469 (634)
                      |++. . .+..+..|..            ....+.++++++++ +||+|+.||+|++||+.+  .....+.+|..+|++|
T Consensus       147 d~~~-~-~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~  210 (383)
T 3ei3_B          147 DFSG-S-VIQVFAKTDS------------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHA  210 (383)
T ss_dssp             ETTS-C-EEEEEECCCC------------SSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEE
T ss_pred             ECCC-C-ceEEEeccCC------------CCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEE
Confidence            9985 3 3455543221            12457899999998 899999999999999853  3667888999999999


Q ss_pred             EECCCCC-EEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccc-ccccccccCC
Q 047036          470 DVTYDGK-WILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHG-GHFSWVTENG  546 (634)
Q Consensus       470 dfSpDGk-~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~-a~Fs~~t~~g  546 (634)
                      +|+|+|+ +|++ +.|++|+|||+......+.++..+ +|.+.                  ...+.|+| .        |
T Consensus       211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~------------------v~~~~~s~~~--------~  263 (383)
T 3ei3_B          211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP------------------VNAAYFNPTD--------S  263 (383)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC------------------EEEEEECTTT--------S
T ss_pred             EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc------------------eEEEEEcCCC--------C
Confidence            9999999 7888 889999999987322223333333 22210                  01345554 2        2


Q ss_pred             CCceEEEEEcCCeEEEEeChh
Q 047036          547 KQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       547 ~~E~~IvtStg~~viiWdl~~  567 (634)
                        ...++++.|+.|.+||+..
T Consensus       264 --~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          264 --TKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             --CEEEEEESSSEEEEEETTB
T ss_pred             --CEEEEEcCCCcEEEEECCC
Confidence              2344557799999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.3e-21  Score=186.27  Aligned_cols=245  Identities=14%  Similarity=0.157  Sum_probs=169.9

Q ss_pred             cEEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          257 QSLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       257 ~~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      ...++.++++.+++.|   ..|.||......     ....+..|       -.+...+.+++++++|++++.|      +
T Consensus        20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d------g   81 (313)
T 3odt_A           20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQW-----LGTVVYTG-------QGFLNSVCYDSEKELLLFGGKD------T   81 (313)
T ss_dssp             CEEEEEEEETTEEEEEETTSEEEEEEESSSE-----EEEEEEEC-------SSCEEEEEEETTTTEEEEEETT------S
T ss_pred             CcEEEEecCCCEEEEEEcCCcEEEEECCCCE-----EEEEeecC-------CccEEEEEECCCCCEEEEecCC------C
Confidence            3555555566556654   478889874432     12223332       1234445556667778888775      6


Q ss_pred             cEEEEeCCCC---cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          334 GVQQLDIETG---KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       334 TIrlWDleTG---K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +|++||+...   +.+..+.+|...|  ..++|  +        +..+++|+.|++|++||.   ...+..+.+|..+  
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~--~--------~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~--  144 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNV--CSLSF--Q--------DGVVISGSWDKTAKVWKE---GSLVYNLQAHNAS--  144 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCE--EEEEE--E--------TTEEEEEETTSEEEEEET---TEEEEEEECCSSC--
T ss_pred             eEEEEEeeecCCCCcccchhhcccCE--EEEEe--c--------CCEEEEEeCCCCEEEEcC---CcEEEecccCCCc--
Confidence            8999998654   7789999999875  34466  3        469999999999999993   2345566555433  


Q ss_pred             ccccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccccccccccC-CCCCeEEEEECCCCCEEEE-EcCCcE
Q 047036          411 HWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG-LGSPITHVDVTYDGKWILG-TTDTYL  486 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~G-H~d~ItsVdfSpDGk~LlS-S~D~tI  486 (634)
                                   +.++++.+ ++ +|++|+.||.|++||..   .....+.+ |..+|.+++|+|+|+ |++ +.|++|
T Consensus       145 -------------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i  207 (313)
T 3odt_A          145 -------------VWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI  207 (313)
T ss_dssp             -------------EEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred             -------------eeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeE
Confidence                         45666655 55 89999999999999943   24556666 999999999999999 666 999999


Q ss_pred             EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      ++||+.    .++.+..|.+|.+..                  ..+.|+|.        +   +.++++.++.|.+||+.
T Consensus       208 ~i~d~~----~~~~~~~~~~~~~~i------------------~~~~~~~~--------~---~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          208 KLVDMH----TGDVLRTYEGHESFV------------------YCIKLLPN--------G---DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             EEEETT----TCCEEEEEECCSSCE------------------EEEEECTT--------S---CEEEEETTSEEEEECTT
T ss_pred             EEEECC----chhhhhhhhcCCceE------------------EEEEEecC--------C---CEEEEecCCEEEEEECC
Confidence            999986    577777777665310                  12444443        3   46667889999999987


Q ss_pred             hhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          567 QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       567 ~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      .   ++.             ...+..+...|..+.|
T Consensus       255 ~---~~~-------------~~~~~~~~~~i~~~~~  274 (313)
T 3odt_A          255 N---GSL-------------KQVITLPAISIWSVDC  274 (313)
T ss_dssp             T---CCE-------------EEEEECSSSCEEEEEE
T ss_pred             C---Cce-------------eEEEeccCceEEEEEE
Confidence            3   322             2466777788888887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=1e-20  Score=198.84  Aligned_cols=218  Identities=14%  Similarity=0.225  Sum_probs=158.8

Q ss_pred             CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC
Q 047036          264 LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI  340 (634)
Q Consensus       264 ~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl  340 (634)
                      .++.+++.|   .+|.||......     ....+.+|.       .+...+.++  .++|++++.|      ++|++||+
T Consensus       127 ~~g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~-------~~v~~~~~~--~~~l~s~~~d------g~i~vwd~  186 (445)
T 2ovr_B          127 FCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHT-------GGVWSSQMR--DNIIISGSTD------RTLKVWNA  186 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCC-----EEEECCCCS-------SCEEEEEEE--TTEEEEEETT------SCEEEEET
T ss_pred             EcCCEEEEEECCCcEEEEECCCCc-----EEEEEcCCC-------CCEEEEEec--CCEEEEEeCC------CeEEEEEC
Confidence            345555554   588889865543     233455552       122333333  4577777765      79999999


Q ss_pred             CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccccccccc
Q 047036          341 ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSR  420 (634)
Q Consensus       341 eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~  420 (634)
                      .+|+++.++.+|...|  ..++|+          +..+++|+.|++|++||++++.. +..+.+|..+            
T Consensus       187 ~~~~~~~~~~~h~~~v--~~~~~~----------~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~------------  241 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTV--RCMHLH----------EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAA------------  241 (445)
T ss_dssp             TTTEEEEEECCCSSCE--EEEEEE----------TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSC------------
T ss_pred             CcCcEEEEECCCCCcE--EEEEec----------CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCccc------------
Confidence            9999999999999875  344664          35899999999999999998654 5667655443            


Q ss_pred             CcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCC
Q 047036          421 GTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGK  499 (634)
Q Consensus       421 ~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~  499 (634)
                         +.|+++ .+.+||+|+.||.|++||+.+++ ....+.+|..+|++++|  ||++|++ +.|++|++||+.    +++
T Consensus       242 ---v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~----~~~  310 (445)
T 2ovr_B          242 ---VRCVQY-DGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE----TGN  310 (445)
T ss_dssp             ---EEEEEE-CSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT----TCC
T ss_pred             ---EEEEEE-CCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC----CCC
Confidence               467777 33489999999999999998864 77788999999999999  8999999 899999999986    677


Q ss_pred             eeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          500 TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       500 ~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      ++..+.+|....                    ..+.   |+     +  ...++++.|+.|.+||+..
T Consensus       311 ~~~~~~~~~~~v--------------------~~~~---~~-----~--~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          311 CIHTLTGHQSLT--------------------SGME---LK-----D--NILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             EEEEECCCCSCE--------------------EEEE---EE-----T--TEEEEEETTSCEEEEETTT
T ss_pred             EEEEEcCCcccE--------------------EEEE---Ee-----C--CEEEEEeCCCeEEEEECCC
Confidence            777777665310                    1111   11     2  2455557899999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=2.5e-21  Score=228.27  Aligned_cols=237  Identities=16%  Similarity=0.160  Sum_probs=174.7

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ..+.++++ +|+.+++.|   .+|.||......     ....+.+|. ++.+.+|+|        ++++|++++.|    
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~--------~~~~l~s~~~d----  678 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSS--------DDSYIATCSAD----  678 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECT--------TSSEEEEEETT----
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEec--------CCCEEEEEeCC----
Confidence            34778888 899988875   589999976543     344566652 234455555        55667777765    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                        ++|++||+.+|+++.++.+|...|  ..++|+|++.      +..+++|+.|++|++||++++.+ +..+.+|..+  
T Consensus       679 --~~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~------~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~--  745 (1249)
T 3sfz_A          679 --KKVKIWDSATGKLVHTYDEHSEQV--NCCHFTNKSN------HLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNS--  745 (1249)
T ss_dssp             --SEEEEEETTTCCEEEEEECCSSCE--EEEEECSSSS------CCEEEEEETTSCEEEEETTSSSE-EEEECCCSSC--
T ss_pred             --CeEEEEECCCCceEEEEcCCCCcE--EEEEEecCCC------ceEEEEEeCCCeEEEEECCCcch-hheecCCCCC--
Confidence              799999999999999999999986  4669999633      46899999999999999998764 5677666543  


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc-------------------------------
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA-------------------------------  458 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~-------------------------------  458 (634)
                                   +.+++++|+| +||+|+.||+|++||+.+++ ....                               
T Consensus       746 -------------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~  811 (1249)
T 3sfz_A          746 -------------VNHCRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD  811 (1249)
T ss_dssp             -------------EEEEEECSSTTEEEEEESSSEEEEEEGGGTE-EEEEEECCCCC--------CCCCCBCCCCBCTTSS
T ss_pred             -------------EEEEEEecCCCEEEEEECCCeEEEEeCCCCc-ccceecccccccccCCccccccceEEEEEECCCCC
Confidence                         5788999998 89999999999999987642 1111                               


Q ss_pred             ------------------------ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCC
Q 047036          459 ------------------------FPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIP  513 (634)
Q Consensus       459 ------------------------L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p  513 (634)
                                              ..+|..+|++++|+|+|++|++ +.|++|++||+.    .+..+..+.+|.+..  
T Consensus       812 ~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~h~~~v--  885 (1249)
T 3sfz_A          812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWV--  885 (1249)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT----TTEEEEEECCCSSCE--
T ss_pred             EEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC----CCceeeecCCCccce--
Confidence                                    1277888888889999888888 788889999875    566666666665311  


Q ss_pred             CceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhh
Q 047036          514 APRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQV  568 (634)
Q Consensus       514 ~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v  568 (634)
                                      ..+.|+|.        |  ...++++.|+.|.+|++...
T Consensus       886 ----------------~~v~~spd--------g--~~l~s~s~dg~v~vw~~~~~  914 (1249)
T 3sfz_A          886 ----------------HGVMFSPD--------G--SSFLTASDDQTIRVWETKKV  914 (1249)
T ss_dssp             ----------------EEEEECTT--------S--SEEEEEETTSCEEEEEHHHH
T ss_pred             ----------------EEEEECCC--------C--CEEEEEeCCCeEEEEEcccc
Confidence                            12445443        3  24455578999999998753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=2.8e-21  Score=200.46  Aligned_cols=180  Identities=14%  Similarity=0.080  Sum_probs=136.3

Q ss_pred             CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeC-CcceEEecCCCCCCCCCCcEEEEeCCCC-------c
Q 047036          273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRG-ETNMMLMSPLKDGKPQAPGVQQLDIETG-------K  344 (634)
Q Consensus       273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~~~~~~~TIrlWDleTG-------K  344 (634)
                      ..|.||.....|.... ....+.+|.       .+...+.+++ ++++|++++.|      ++|++||+.++       +
T Consensus        57 g~i~v~~~~~~~~~~~-~~~~~~~h~-------~~V~~~~~~p~~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~  122 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDK-NVPLVCGHT-------APVLDIAWCPHNDNVIASGSED------CTVMVWEIPDGGLVLPLRE  122 (402)
T ss_dssp             CCEEEEETTCCEECCT-TCCCBCCCS-------SCEEEEEECTTCTTEEEEEETT------SEEEEEECCTTCCSSCBCS
T ss_pred             CEEEEEECccCCCCCC-CCceEecCC-------CCEEEEEeCCCCCCEEEEEeCC------CeEEEEEccCCCCccccCC
Confidence            5677787655431111 111233441       2333444444 56777887765      79999999998       6


Q ss_pred             EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEec--ccCCCCccccccccccccCc
Q 047036          345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM--VKGDSPVLHWTQGHQFSRGT  422 (634)
Q Consensus       345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l--~gh~s~V~~~~~g~~y~~~~  422 (634)
                      .+..+.+|...|  ..++|+|++       ...+++|+.|++|++||++++. .+..+  .+|..               
T Consensus       123 ~~~~~~~h~~~v--~~~~~~p~~-------~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~---------------  177 (402)
T 2aq5_A          123 PVITLEGHTKRV--GIVAWHPTA-------QNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPD---------------  177 (402)
T ss_dssp             CSEEEECCSSCE--EEEEECSSB-------TTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCS---------------
T ss_pred             ceEEecCCCCeE--EEEEECcCC-------CCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCC---------------
Confidence            789999999986  466999983       1599999999999999999865 35566  44433               


Q ss_pred             ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc-cCCCCC-eEEEEECCCCCEEEEE----cCCcEEEEEcc
Q 047036          423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF-PGLGSP-ITHVDVTYDGKWILGT----TDTYLILICTL  492 (634)
Q Consensus       423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L-~GH~d~-ItsVdfSpDGk~LlSS----~D~tIrLWD~~  492 (634)
                      .+.+++++|+| +||+|+.||+|+|||+.+++ ....+ .+|... |.++.|+|||++|+++    .|++|+|||+.
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            46899999998 79999999999999998864 55666 788876 9999999999999886    79999999976

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=2.1e-21  Score=217.46  Aligned_cols=217  Identities=13%  Similarity=0.093  Sum_probs=159.7

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      .+.+|+|+        +.+|++++.+      ++|++||+.+|+.++++.+|...|  ..++|+|+        +..|++
T Consensus        17 ~~i~~sp~--------~~~la~~~~~------g~v~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~--------~~~l~~   72 (814)
T 3mkq_A           17 KGIDFHPT--------EPWVLTTLYS------GRVEIWNYETQVEVRSIQVTETPV--RAGKFIAR--------KNWIIV   72 (814)
T ss_dssp             EEEEECSS--------SSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCE--EEEEEEGG--------GTEEEE
T ss_pred             EEEEECCC--------CCEEEEEeCC------CEEEEEECCCCceEEEEecCCCcE--EEEEEeCC--------CCEEEE
Confidence            45556655        4556666654      799999999999999999999976  46699998        679999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      |+.|++|++||+++++. +..+.+|..               .+.+++++|+| +||+|+.||+|++||+.+.......+
T Consensus        73 ~~~dg~i~vw~~~~~~~-~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  136 (814)
T 3mkq_A           73 GSDDFRIRVFNYNTGEK-VVDFEAHPD---------------YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (814)
T ss_dssp             EETTSEEEEEETTTCCE-EEEEECCSS---------------CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred             EeCCCeEEEEECCCCcE-EEEEecCCC---------------CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence            99999999999998754 567765544               36889999999 79999999999999988753456788


Q ss_pred             cCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          460 PGLGSPITHVDVTY-DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       460 ~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      .+|..+|++++|+| +|++|++ +.|++|++||+.    .++....+..+...             .    ...+.|.|.
T Consensus       137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~-------------~----v~~~~~~~~  195 (814)
T 3mkq_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQER-------------G----VNYVDYYPL  195 (814)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTT-------------C----CCEEEECCS
T ss_pred             cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCC-------------C----EEEEEEEEC
Confidence            89999999999999 9999999 899999999975    34333333322210             0    012344432


Q ss_pred             cccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          538 HFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                           . .+  ...++++.++.|.+||+..   ++.             ...+..+...|..+.|
T Consensus       196 -----~-~~--~~l~~~~~dg~i~~~d~~~---~~~-------------~~~~~~~~~~v~~~~~  236 (814)
T 3mkq_A          196 -----P-DK--PYMITASDDLTIKIWDYQT---KSC-------------VATLEGHMSNVSFAVF  236 (814)
T ss_dssp             -----T-TC--CEEEEECTTSEEEEEETTT---TEE-------------EEEEECCSSCEEEEEE
T ss_pred             -----C-CC--CEEEEEeCCCEEEEEECCC---CcE-------------EEEEcCCCCCEEEEEE
Confidence                 1 12  2344456789999999863   221             2345566667776666

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.89  E-value=5.6e-21  Score=205.18  Aligned_cols=236  Identities=8%  Similarity=0.053  Sum_probs=170.2

Q ss_pred             CcEEEeee-CCCeEEEe--cCeeeEEEccCCceecceeEEEecCCCCCcccccCc-ceeeEEeC--CcceEEecCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTP-KKALLMRG--ETNMMLMSPLKDGK  329 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP-~~~mL~~~--D~~mllsss~d~~~  329 (634)
                      +...++++ +|+.+++-  +..|.||......-. ......+.+|.       .+ ...+.+++  ++++|++++.|   
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~-~~~~~~~~~h~-------~~~v~~~~~sp~~~~~~l~s~~~d---   87 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-VPPVVQFTGHG-------SSVVTTVKFSPIKGSQYLCSGDES---   87 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS-SCSEEEECTTT-------TSCEEEEEECSSTTCCEEEEEETT---
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCc-cccceEEecCC-------CceEEEEEECcCCCCCEEEEecCC---
Confidence            34566666 67766554  468899987643100 01344566652       12 33344444  55677777765   


Q ss_pred             CCCCcEEEEeCCCC--------cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC----CeEEEEEcCCCCc
Q 047036          330 PQAPGVQQLDIETG--------KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD----NRLCQWDMRDRSG  397 (634)
Q Consensus       330 ~~~~TIrlWDleTG--------K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D----~tIklWD~R~~~~  397 (634)
                         ++|++||+.+|        +++.++.+|...|  ..++|+|+        +..+++++.+    +.|++||.  +. 
T Consensus        88 ---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~--------~~~l~~~~~~~~~~~~v~~~d~--~~-  151 (615)
T 1pgu_A           88 ---GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI--SDISWDFE--------GRRLCVVGEGRDNFGVFISWDS--GN-  151 (615)
T ss_dssp             ---SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE--EEEEECTT--------SSEEEEEECCSSCSEEEEETTT--CC-
T ss_pred             ---CEEEEEeCCCCcccccccccccchhhcccccE--EEEEEeCC--------CCEEEEeccCCCCccEEEEEEC--CC-
Confidence               79999999866        8889999999876  46699998        6789999988    79999994  23 


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCC---CeEEEEEC
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS---PITHVDVT  472 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d---~ItsVdfS  472 (634)
                      .+..+.+|..               .+.+++++|+|  .||+|+.||.|++||+.+++ ....+.+|..   +|++|+|+
T Consensus       152 ~~~~~~~~~~---------------~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          152 SLGEVSGHSQ---------------RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             EEEECCSCSS---------------CEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEEC
T ss_pred             cceeeecCCc---------------cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCCCceEEEEEEC
Confidence            4567765544               36789999998  69999999999999998864 7778999999   99999999


Q ss_pred             CC-CCEEEE-EcCCcEEEEEcccccCCCCeeeee-c---CCCCCCCCCceeEeecCCCccccCCCcccccccccccccCC
Q 047036          473 YD-GKWILG-TTDTYLILICTLFSDKDGKTKTGF-S---GRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENG  546 (634)
Q Consensus       473 pD-Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF-~---gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g  546 (634)
                      |+ |++|++ +.|++|++||+.    .|+.+..| .   +|.+.                  ...+.|+ .        +
T Consensus       216 ~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~------------------v~~~~~~-~--------~  264 (615)
T 1pgu_A          216 PDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGG------------------IFALSWL-D--------S  264 (615)
T ss_dssp             STTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSC------------------EEEEEES-S--------S
T ss_pred             CCCCCEEEEEeCCCeEEEEECC----CCCEeEEecccccccCCc------------------eEEEEEc-C--------C
Confidence            99 999999 889999999985    56666666 3   33320                  0123333 2        2


Q ss_pred             CCceEEEEEcCCeEEEEeChh
Q 047036          547 KQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       547 ~~E~~IvtStg~~viiWdl~~  567 (634)
                        ...++++.++.|.+||+..
T Consensus       265 --~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          265 --QKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             --SEEEEEETTSEEEEEETTT
T ss_pred             --CEEEEEcCCCcEEEEECCC
Confidence              2445557799999999973

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.88  E-value=1.9e-21  Score=201.62  Aligned_cols=177  Identities=15%  Similarity=0.133  Sum_probs=136.6

Q ss_pred             CcEEEEeCCCC----cEEEEEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC------ceEEe
Q 047036          333 PGVQQLDIETG----KIVTEWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRS------GIVQN  401 (634)
Q Consensus       333 ~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~------~~Vq~  401 (634)
                      ++|++||+.+.    +.+..+.+|...|  ..++|+| +        +.+|++|+.|++|++||+..++      ..+..
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V--~~~~~~p~~--------~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~  126 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPV--LDIAWCPHN--------DNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT  126 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCE--EEEEECTTC--------TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCE--EEEEeCCCC--------CCEEEEEeCCCeEEEEEccCCCCccccCCceEE
Confidence            79999999654    3456788999986  4669999 6        6799999999999999998763      23455


Q ss_pred             cccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccc--cCCCCCeEEEEECCCCCE
Q 047036          402 MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAF--PGLGSPITHVDVTYDGKW  477 (634)
Q Consensus       402 l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L--~GH~d~ItsVdfSpDGk~  477 (634)
                      +.+|..               .+.+++++|+|  .||+|+.||+|+|||+.+++ ....+  .+|..+|++|+|+|||++
T Consensus       127 ~~~h~~---------------~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          127 LEGHTK---------------RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             EECCSS---------------CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             ecCCCC---------------eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCE
Confidence            555543               46899999997  69999999999999998864 66677  899999999999999999


Q ss_pred             EEE-EcCCcEEEEEcccccCCCCeeeee-cCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE
Q 047036          478 ILG-TTDTYLILICTLFSDKDGKTKTGF-SGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT  555 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~~~~~~G~~~~gF-~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS  555 (634)
                      |++ +.|++|+|||++    .++.+..+ .+|.+..   +              ..+.|+|.        |   ..|+++
T Consensus       191 l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~---~--------------~~~~~~~~--------~---~~l~~g  238 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTR---P--------------VHAVFVSE--------G---KILTTG  238 (402)
T ss_dssp             EEEEETTSEEEEEETT----TTEEEEEEECSSCSSS---C--------------CEEEECST--------T---EEEEEE
T ss_pred             EEEEecCCcEEEEeCC----CCceeeeeccCCCCCc---c--------------eEEEEcCC--------C---cEEEEe
Confidence            999 889999999986    56666666 4554310   0              12333332        3   566665


Q ss_pred             ----cCCeEEEEeChh
Q 047036          556 ----VGKFSVIWDFQQ  567 (634)
Q Consensus       556 ----tg~~viiWdl~~  567 (634)
                          .++.|.+||+..
T Consensus       239 ~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          239 FSRMSERQVALWDTKH  254 (402)
T ss_dssp             ECTTCCEEEEEEETTB
T ss_pred             ccCCCCceEEEEcCcc
Confidence                689999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=2.7e-21  Score=192.93  Aligned_cols=147  Identities=13%  Similarity=0.092  Sum_probs=114.0

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCc-EEEEEeccCCC--cceeEEE----EecCCCCCCCCCCCEEEEEeCCCe
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGK-IVTEWKFEKDG--TDITMRD----ITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK-~V~~lkgH~~~--V~I~vvs----fsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      +.++++|++++.|      ++|++||+.+++ .+..+..|...  ..+..++    |+|+        +..+++|+.|++
T Consensus       126 s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~l~~~~~d~~  191 (357)
T 3i2n_A          126 GEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE--------ERVVCAGYDNGD  191 (357)
T ss_dssp             C-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C--------CCEEEEEETTSE
T ss_pred             CCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC--------CCEEEEEccCCe
Confidence            3455667777765      799999999997 88999877651  1123445    5566        689999999999


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC---CC-eEEEEECCCcEEEEecccccccccccc--
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG---DG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--  460 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~---dG-~IASGS~DGtIRLWD~~t~r~akt~L~--  460 (634)
                      |++||++.+.. +.. ..|               ...+.+++++|   ++ +|++|+.||.|+|||+.+.+ ....+.  
T Consensus       192 i~i~d~~~~~~-~~~-~~~---------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~  253 (357)
T 3i2n_A          192 IKLFDLRNMAL-RWE-TNI---------------KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH-PTKGFASV  253 (357)
T ss_dssp             EEEEETTTTEE-EEE-EEC---------------SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE-TTTEEEEE
T ss_pred             EEEEECccCce-eee-cCC---------------CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC-cccceeee
Confidence            99999998643 222 222               23578999998   76 89999999999999988753 445554  


Q ss_pred             ---CCCCCeEEEEECCCCC-EEEE-EcCCcEEEEEcc
Q 047036          461 ---GLGSPITHVDVTYDGK-WILG-TTDTYLILICTL  492 (634)
Q Consensus       461 ---GH~d~ItsVdfSpDGk-~LlS-S~D~tIrLWD~~  492 (634)
                         +|..+|++|+|+|+|+ +|++ +.|++|+|||+.
T Consensus       254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence               9999999999999999 7888 889999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.2e-20  Score=199.83  Aligned_cols=162  Identities=10%  Similarity=0.073  Sum_probs=129.5

Q ss_pred             ceeeEEeCCcceE-EecCCCCCCCCCCcEEEEeCC--CCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          308 KKALLMRGETNMM-LMSPLKDGKPQAPGVQQLDIE--TGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       308 ~~~mL~~~D~~ml-lsss~d~~~~~~~TIrlWDle--TGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      ...+.+++++++| ++++.|      ++|++||+.  +|++++.+..  |...|  ..++|+|+        +..|++|+
T Consensus       105 v~~~~~s~d~~~l~~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~--------~~~l~~~~  168 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSD------KSLLVFDVDKTSKNVLKLRKRFCFSKRP--NAISIAED--------DTTVIIAD  168 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGG------TEEEEEEECSSSSSCEEEEEEEECSSCE--EEEEECTT--------SSEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCC------CeEEEEECcCCCCceeeeeecccCCCCc--eEEEEcCC--------CCEEEEEe
Confidence            4556667777776 555554      799999999  9999999984  45554  56799998        67999999


Q ss_pred             CCCeEEEEEcCCCCc---eEEecccCCCCccccccccccccCcceEEEEECCC---C-eEEEEECCCcEEEEeccccccc
Q 047036          383 DDNRLCQWDMRDRSG---IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD---G-SIVVGSLDGKIRLYSKTSMRQA  455 (634)
Q Consensus       383 ~D~tIklWD~R~~~~---~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d---G-~IASGS~DGtIRLWD~~t~r~a  455 (634)
                      .|+.|++||++....   .+..+.+|.               ..+.+++++|+   | +||+|+.|++|||||+.+++ .
T Consensus       169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~---------------~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-~  232 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKFTQEPILGHV---------------SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-I  232 (450)
T ss_dssp             TTSEEEEEETTSCCCSSCCCCCSEECS---------------SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-C
T ss_pred             CCCcEEEEecCCcccccccceeeeccc---------------CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-e
Confidence            999999999987542   112343333               34688999998   8 89999999999999998764 4


Q ss_pred             cc-cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecC
Q 047036          456 KT-AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       456 kt-~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                      .. .+.+|..+|++|+|+ ||++|++ +.|++|+|||+.    +|+++..+..
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~----~~~~~~~~~~  280 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK----TGKNLSTFDY  280 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT----TCCEEEEEEC
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC----CCcEeeeecc
Confidence            44 477999999999999 9999999 999999999986    6777777754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=4.7e-21  Score=194.15  Aligned_cols=210  Identities=13%  Similarity=0.162  Sum_probs=147.2

Q ss_pred             cEEEeee-C-CCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ...++.+ + ++.+++.|   ..|.+|......     ....+..........|.|..     .+..++++++.+     
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----  165 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-----TADVFNFEETVYSHHMSPVS-----TKHCLVAVGTRG-----  165 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEECSSC-----SSCCEEEEEESS-----
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-----cceeccCCCceeeeEeecCC-----CCCcEEEEEcCC-----
Confidence            4666666 5 55455543   478888865532     11122211122344444432     344577777665     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC-EEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE-STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                       ++|++||+.+++++..+.+|...|  ..++|+|+        +. ++++|+.|++|++||++.....+..+..+.....
T Consensus       166 -~~v~~~d~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          166 -PKVQLCDLKSGSCSHILQGHRQEI--LAVSWSPR--------YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             -SSEEEEESSSSCCCEEECCCCSCE--EEEEECSS--------CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             -CeEEEEeCCCcceeeeecCCCCcE--EEEEECCC--------CCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence             689999999999999999999976  45699998        44 6999999999999999987644555543332110


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc------------------------------------
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR------------------------------------  453 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r------------------------------------  453 (634)
                      .........+...+.+++++|+| +||+|+.||.|++||+.+++                                    
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred             eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence            00000011244568999999999 79999999999999987642                                    


Q ss_pred             ----------cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          454 ----------QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       454 ----------~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                                .....+.+|..+|++|+|+|||++|++ +.|++|+|||+.
T Consensus       315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence                      123345789999999999999999999 899999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=202.31  Aligned_cols=220  Identities=11%  Similarity=0.131  Sum_probs=142.2

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc-----------EEEEEeccC------------CCcceeEEEEe
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK-----------IVTEWKFEK------------DGTDITMRDIT  364 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK-----------~V~~lkgH~------------~~V~I~vvsfs  364 (634)
                      ...+.++.++++|++++.|      ++|++||+.+++           ++.++.+|.            ..|  ..++|+
T Consensus        31 V~~v~~s~~g~~la~g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V--~~l~~~  102 (447)
T 3dw8_B           31 ISTVEFNHSGELLATGDKG------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI--NKIRWL  102 (447)
T ss_dssp             EEEEEECSSSSEEEEEETT------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC--CEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCC------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce--EEEEEc
Confidence            3444555566777777765      799999999988           689999998            766  456999


Q ss_pred             cCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe--cccCCC--------------------------Ccccccccc
Q 047036          365 NDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN--MVKGDS--------------------------PVLHWTQGH  416 (634)
Q Consensus       365 Pd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~--l~gh~s--------------------------~V~~~~~g~  416 (634)
                      |++.      ...+++|+.|++|++||++.+......  +.++..                          ++..+..+ 
T Consensus       103 ~~~~------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (447)
T 3dw8_B          103 PQKN------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-  175 (447)
T ss_dssp             CCCS------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC-
T ss_pred             CCCC------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC-
Confidence            9821      168999999999999999763321000  000000                          00000011 


Q ss_pred             ccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc-------cccCCCCCeEEEEECCCC-CEEEE-EcCCcE
Q 047036          417 QFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT-------AFPGLGSPITHVDVTYDG-KWILG-TTDTYL  486 (634)
Q Consensus       417 ~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt-------~L~GH~d~ItsVdfSpDG-k~LlS-S~D~tI  486 (634)
                         +...+.+++++|+| +||+| .||+|+|||+....+...       .+.+|..+|++|+|+|+| ++|++ +.|++|
T Consensus       176 ---h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 ---HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             ---CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ---CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence               33457899999999 78888 799999999874222333       477999999999999999 99999 899999


Q ss_pred             EEEEcccccCCCCe----eeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEE
Q 047036          487 ILICTLFSDKDGKT----KTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVI  562 (634)
Q Consensus       487 rLWD~~~~~~~G~~----~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vii  562 (634)
                      +|||++    .++.    +..|.+|....   .+  .....|      .-..+...|++.   |   ++|+++.++.|.+
T Consensus       252 ~iwd~~----~~~~~~~~~~~~~~~~~~~---~~--~~~~~~------~~~v~~~~~s~~---g---~~l~~~~~~~v~i  310 (447)
T 3dw8_B          252 RLCDMR----ASALCDRHSKLFEEPEDPS---NR--SFFSEI------ISSISDVKFSHS---G---RYMMTRDYLSVKV  310 (447)
T ss_dssp             EEEETT----TCSSSCTTCEEECCC--------C--CHHHHH------TTCEEEEEECTT---S---SEEEEEESSEEEE
T ss_pred             EEEECc----CCccccceeeEeccCCCcc---cc--cccccc------CceEEEEEECCC---C---CEEEEeeCCeEEE
Confidence            999986    3443    45666654310   00  000000      001223334431   3   5676655599999


Q ss_pred             EeChh
Q 047036          563 WDFQQ  567 (634)
Q Consensus       563 Wdl~~  567 (634)
                      ||+..
T Consensus       311 wd~~~  315 (447)
T 3dw8_B          311 WDLNM  315 (447)
T ss_dssp             EETTC
T ss_pred             EeCCC
Confidence            99974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=5.1e-21  Score=225.70  Aligned_cols=160  Identities=14%  Similarity=0.188  Sum_probs=133.2

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL  387 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI  387 (634)
                      ...+.+++++++|++++.|      ++|++||+.+|+.+.++.+|...|  ..++|+|+        +..+++|+.|++|
T Consensus       618 v~~~~~s~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~h~~~v--~~~~~s~~--------~~~l~s~~~d~~v  681 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGAD------KTLQVFKAETGEKLLDIKAHEDEV--LCCAFSSD--------DSYIATCSADKKV  681 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSEE
T ss_pred             EEEEEECCCCCEEEEEeCC------CeEEEEECCCCCEEEEeccCCCCE--EEEEEecC--------CCEEEEEeCCCeE
Confidence            3344455566777777765      799999999999999999999986  46699998        6799999999999


Q ss_pred             EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036          388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS  464 (634)
Q Consensus       388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d  464 (634)
                      ++||++++. .+..+.+|..               .+.+++++++  + .||+|+.||+|++||+.+++ ....+.+|..
T Consensus       682 ~vwd~~~~~-~~~~~~~~~~---------------~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~  744 (1249)
T 3sfz_A          682 KIWDSATGK-LVHTYDEHSE---------------QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTN  744 (1249)
T ss_dssp             EEEETTTCC-EEEEEECCSS---------------CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSS
T ss_pred             EEEECCCCc-eEEEEcCCCC---------------cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCC
Confidence            999999865 4677766654               3578899884  3 68999999999999998874 7788999999


Q ss_pred             CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036          465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      +|++++|+|||++|++ +.|++|++||+.    .++....+
T Consensus       745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~----~~~~~~~~  781 (1249)
T 3sfz_A          745 SVNHCRFSPDDELLASCSADGTLRLWDVR----SANERKSI  781 (1249)
T ss_dssp             CEEEEEECSSTTEEEEEESSSEEEEEEGG----GTEEEEEE
T ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEeCC----CCccccee
Confidence            9999999999999999 899999999986    45444443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=6.1e-21  Score=201.51  Aligned_cols=196  Identities=14%  Similarity=0.128  Sum_probs=142.0

Q ss_pred             cEEEeee-CC-CeEEEec---CeeeEEEccCC-------ceecceeEEEecCCC-CCcccccCcceeeEEeCCcc-eEEe
Q 047036          257 QSLTLGA-LD-NSFLVSD---LGLQVYRNYNR-------GIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETN-MMLM  322 (634)
Q Consensus       257 ~~LavG~-~D-~sfvv~G---~~igV~k~~~~-------gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~-mlls  322 (634)
                      .+..+.+ ++ +.+++.|   ..|.||.....       + .. .....+.+|. .+.+.+|+|.        +. +|++
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~-~~-~~~~~~~~h~~~v~~l~~~~~--------~~~~l~s  199 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG-EC-QPDLRLRGHQKEGYGLSWNPN--------LNGYLLS  199 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC-CC-CCSEEEECCSSCCCCEEECTT--------STTEEEE
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc-cC-CCcEEecCCCCCeEEEEeCCC--------CCCeEEE
Confidence            3444555 54 5666654   47999997542       1 01 1233455552 2244455544        34 6677


Q ss_pred             cCCCCCCCCCCcEEEEeCCCCcE-------EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          323 SPLKDGKPQAPGVQQLDIETGKI-------VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       323 ss~d~~~~~~~TIrlWDleTGK~-------V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      ++.|      ++|++||+.+++.       +..+.+|...|  ..++|+|+.       +.++++|+.|++|++||+|..
T Consensus       200 ~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~~p~~-------~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          200 ASDD------HTICLWDINATPKEHRVIDAKNIFTGHTAVV--EDVAWHLLH-------ESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             ECTT------SCEEEEETTSCCBGGGEEECSEEECCCSSCE--EEEEECSSC-------TTEEEEEETTSEEEEEETTCS
T ss_pred             EeCC------CeEEEEeCCCCCCCCceeccceeecCCCCCE--eeeEEeCCC-------CCEEEEEeCCCeEEEEECCCC
Confidence            7664      7999999998432       56788999876  466999952       479999999999999999976


Q ss_pred             C--ceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          396 S--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       396 ~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                      .  ..+..+..|.               ..+++++++|++  .||+|+.||+|+|||+.+.+.....+.+|..+|++|+|
T Consensus       265 ~~~~~~~~~~~~~---------------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~  329 (430)
T 2xyi_A          265 NTSKPSHTVDAHT---------------AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  329 (430)
T ss_dssp             CSSSCSEEEECCS---------------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred             CCCcceeEeecCC---------------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence            3  3344444443               346899999987  48999999999999988744466788899999999999


Q ss_pred             CCCCC-EEEE-EcCCcEEEEEcc
Q 047036          472 TYDGK-WILG-TTDTYLILICTL  492 (634)
Q Consensus       472 SpDGk-~LlS-S~D~tIrLWD~~  492 (634)
                      +|+|+ +|++ +.|++|+|||+.
T Consensus       330 sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          330 SPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             CSSCTTEEEEEETTSCCEEEEGG
T ss_pred             CCCCCCEEEEEeCCCcEEEEeCC
Confidence            99996 4667 889999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.7e-22  Score=205.22  Aligned_cols=159  Identities=13%  Similarity=0.161  Sum_probs=125.3

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      .+.++++|++++.|      ++|++||+.+++++.++.+  |...|  ..++|+|+        +..+++|+.|++|++|
T Consensus       178 ~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~s~~--------~~~l~s~~~dg~i~iw  241 (437)
T 3gre_A          178 VNEEKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAV--SSICIDEE--------CCVLILGTTRGIIDIW  241 (437)
T ss_dssp             ECSSCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCE--EEEEECTT--------SCEEEEEETTSCEEEE
T ss_pred             EcCCCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCce--EEEEECCC--------CCEEEEEcCCCeEEEE
Confidence            44677888888775      7999999999999999999  88875  56699998        6799999999999999


Q ss_pred             EcCCCCceEEecc-cCCCCccccccccccccCcceEEEEE----CCCC-eEEEEECCCcEEEEecccccccccccc----
Q 047036          391 DMRDRSGIVQNMV-KGDSPVLHWTQGHQFSRGTNFQCFAS----TGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP----  460 (634)
Q Consensus       391 D~R~~~~~Vq~l~-gh~s~V~~~~~g~~y~~~~~fssva~----s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~----  460 (634)
                      |++.+. ++..+. +|               ...+.++++    +++| +||+|+.||+|+|||+.+++ ....+.    
T Consensus       242 d~~~~~-~~~~~~~~~---------------~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~  304 (437)
T 3gre_A          242 DIRFNV-LIRSWSFGD---------------HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH-CQYAFINSDE  304 (437)
T ss_dssp             ETTTTE-EEEEEBCTT---------------CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE-EEEEEESSSS
T ss_pred             EcCCcc-EEEEEecCC---------------CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc-EEEEEEcCCC
Confidence            999854 455543 22               224677744    4567 79999999999999998653 333332    


Q ss_pred             --------------------C--CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCC
Q 047036          461 --------------------G--LGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       461 --------------------G--H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~  509 (634)
                                          |  |..+|++|+|+ +|++|++ +.|++|++||+.    +++++..+.+|..
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~  371 (437)
T 3gre_A          305 QPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN----ELSSSKAVISPSR  371 (437)
T ss_dssp             CCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT----CGGGCEEEECC--
T ss_pred             CCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC----CcccceEEecccc
Confidence                                3  67779999999 8899999 789999999986    6777788887753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=2.2e-22  Score=210.79  Aligned_cols=223  Identities=9%  Similarity=-0.020  Sum_probs=135.2

Q ss_pred             ecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCC
Q 047036          294 FDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQL  372 (634)
Q Consensus       294 ~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~  372 (634)
                      +.+|. ++.+++|+|........|+++|++++.|      +|||+||+.+++.+..+.+|...|  ..++|+|++     
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D------~tv~~Wd~~~~~~~~~~~~~~~~v--~~v~~~p~~-----  198 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD------CTLIIWRLTDEGPILAGYPLSSPG--ISVQFRPSN-----  198 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT------SEEEEEEEETTEEEEEEEECSSCE--EEEEEETTE-----
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECC------CeEEEEECCCCceeeeecCCCCCc--EEEEECCCC-----
Confidence            34552 3477888886554445577888888876      799999999999999888998876  356999982     


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC----CCccccccc------cccccCcceEEEEEC-CCC-eEEEEEC
Q 047036          373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD----SPVLHWTQG------HQFSRGTNFQCFAST-GDG-SIVVGSL  440 (634)
Q Consensus       373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~----s~V~~~~~g------~~y~~~~~fssva~s-~dG-~IASGS~  440 (634)
                        ..+|++|+.|++|++||++++... ..+..+.    ..+......      ..-.+...+.++++. ++| +|++++.
T Consensus       199 --~~~l~~~~~d~~v~~wd~~t~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~  275 (393)
T 4gq1_A          199 --PNQLIVGERNGNIRIFDWTLNLSA-EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK  275 (393)
T ss_dssp             --EEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT
T ss_pred             --CceEEecCCCCEEEEEECCCCccc-ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC
Confidence              248999999999999999986542 2222111    111100000      000012234566664 787 7999999


Q ss_pred             CCcEEEEeccccccccccccCCCCCeEEEEECCC--------------------CCEEEE-EcCCcEEEEEcccccCCCC
Q 047036          441 DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD--------------------GKWILG-TTDTYLILICTLFSDKDGK  499 (634)
Q Consensus       441 DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD--------------------Gk~LlS-S~D~tIrLWD~~~~~~~G~  499 (634)
                      |++|++||+.+.+ ....|.+|...+..+.++|+                    +.++++ +.|++|+|||+.    .|+
T Consensus       276 d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~----~~~  350 (393)
T 4gq1_A          276 SGAWLRWNLFANN-DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY----EKD  350 (393)
T ss_dssp             TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT----CTT
T ss_pred             CCCEEEEECccCC-CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC----CCc
Confidence            9999999998764 56677788877777777664                    345666 679999999986    455


Q ss_pred             eeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          500 TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       500 ~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                      ++..+.+|..   |               ...+.|+|+        |   +.|++++++.+++|.|.
T Consensus       351 ~~~~~~~~~~---~---------------V~svafspd--------G---~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          351 SNSIPIQLGM---P---------------IVDFCWHQD--------G---SHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             CCEEEEECSS---C---------------EEEEEECTT--------S---SEEEEEESSEEEEEEEG
T ss_pred             EEEEecCCCC---c---------------EEEEEEcCC--------C---CEEEEEeCCCeEEEEEe
Confidence            5555544432   1               023555555        4   67888778888888765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1e-20  Score=188.57  Aligned_cols=193  Identities=10%  Similarity=0.044  Sum_probs=144.5

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +.+++++++|++++.|      ++|++||+.+|+.+.++.+|...|  ..++|+|+        +..+++|+.|++|++|
T Consensus        38 ~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKD------SSASVWYSLNGERLGTLDGHTGTI--WSIDVDCF--------TKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECTTSCEEEEEESS------SCEEEEETTTCCEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTTEEEEE
T ss_pred             EEEcCCCCEEEEEeCC------CEEEEEeCCCchhhhhhhhcCCcE--EEEEEcCC--------CCEEEEEeCCCeEEEE
Confidence            3334445667777665      689999999999999999999986  45699998        6799999999999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC-----CcEEEEecccccc----------
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-----GKIRLYSKTSMRQ----------  454 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-----GtIRLWD~~t~r~----------  454 (634)
                      |++++.. +..+.                ....+.+++++++| +|++++.+     |.|++||+...+.          
T Consensus       102 d~~~~~~-~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  164 (369)
T 3zwl_B          102 DVSNGQC-VATWK----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE  164 (369)
T ss_dssp             ETTTCCE-EEEEE----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred             ECCCCcE-EEEee----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence            9998654 44442                23357899999999 79999999     9999999876421          


Q ss_pred             ccccccCCCC--CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036          455 AKTAFPGLGS--PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD  531 (634)
Q Consensus       455 akt~L~GH~d--~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~  531 (634)
                      ....+.+|..  .|++++|+|+|++|++ +.|++|++||+..   .++.+..+.+|.+..                  ..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v------------------~~  223 (369)
T 3zwl_B          165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN---NYEYVDSIDLHEKSI------------------SD  223 (369)
T ss_dssp             CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT---TTEEEEEEECCSSCE------------------EE
T ss_pred             eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC---CcEeEEEEecCCCce------------------eE
Confidence            2234556666  9999999999999999 8999999999861   255555555554210                  12


Q ss_pred             cccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       532 i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      +.|+|.        +  ...++++.++.|.+||+..
T Consensus       224 ~~~~~~--------~--~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          224 MQFSPD--------L--TYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             EEECTT--------S--SEEEEEETTSEEEEEETTT
T ss_pred             EEECCC--------C--CEEEEecCCceEEEEECCC
Confidence            344443        2  2345557799999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=3.3e-20  Score=193.07  Aligned_cols=230  Identities=13%  Similarity=0.117  Sum_probs=161.2

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++.+ +|+.+++.|   ..|.||......     ....+.+|.       .+...+.+  +.++|++++.|      
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~-------~~v~~~~~--~~~~l~~~~~d------  195 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQ-------ARVGCLSW--NRHVLSSGSRS------  195 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCS-------SCEEEEEE--ETTEEEEEETT------
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----EEEEecCCC-------CceEEEEE--CCCEEEEEcCC------
Confidence            3566666 677666654   478888765433     233444442       12233333  34577777765      


Q ss_pred             CcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|++||+. .++.+..+.+|...|  ..++|+|+        +..+++|+.|++|++||++.+.. +..+.+|..+   
T Consensus       196 g~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~---  261 (401)
T 4aez_A          196 GAIHHHDVRIANHQIGTLQGHSSEV--CGLAWRSD--------GLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAA---  261 (401)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTCSSE-EEEECCCSSC---
T ss_pred             CCEEEEecccCcceeeEEcCCCCCe--eEEEEcCC--------CCEEEEEeCCCeEEEccCCCCCc-cEEecCCcce---
Confidence            799999999 578899999999976  56699998        67999999999999999998653 5566555443   


Q ss_pred             cccccccccCcceEEEEECCCC--eEEEEE--CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E--cCC
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG--SIVVGS--LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T--TDT  484 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG--~IASGS--~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S--~D~  484 (634)
                                  +.+++++|++  .|++|+  .||.|++||+.+++ ....+. |..+|++|+|+|+|++|++ +  .|+
T Consensus       262 ------------v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg  327 (401)
T 4aez_A          262 ------------VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN  327 (401)
T ss_dssp             ------------CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred             ------------EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCC
Confidence                        5788999976  466765  79999999998764 555665 6788999999999999998 4  599


Q ss_pred             cEEEEEcccccCCCCeee--eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEE
Q 047036          485 YLILICTLFSDKDGKTKT--GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSV  561 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~--gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vi  561 (634)
                      +|+|||+.    .++...  .+.+|.+.                  ...+.|+|.        |   .+|++ +.|+.|.
T Consensus       328 ~i~v~~~~----~~~~~~~~~~~~h~~~------------------v~~~~~s~d--------g---~~l~s~~~dg~i~  374 (401)
T 4aez_A          328 NLSIWSYS----SSGLTKQVDIPAHDTR------------------VLYSALSPD--------G---RILSTAASDENLK  374 (401)
T ss_dssp             EEEEEEEE----TTEEEEEEEEECCSSC------------------CCEEEECTT--------S---SEEEEECTTSEEE
T ss_pred             cEEEEecC----CccceeEEEecCCCCC------------------EEEEEECCC--------C---CEEEEEeCCCcEE
Confidence            99999975    333222  23333321                  012444443        3   45554 6799999


Q ss_pred             EEeChh
Q 047036          562 IWDFQQ  567 (634)
Q Consensus       562 iWdl~~  567 (634)
                      +|++..
T Consensus       375 iw~~~~  380 (401)
T 4aez_A          375 FWRVYD  380 (401)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999873

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.9e-22  Score=231.12  Aligned_cols=218  Identities=8%  Similarity=0.024  Sum_probs=146.3

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEE--EEE----e-----ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIV--TEW----K-----FEKDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V--~~l----k-----gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      +++++|++++.|      ++||+||+.+|++.  ..+    .     +|...|  ..++|+||        ++.||+|+.
T Consensus       445 pdg~~laSgs~D------gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V--~svafspd--------g~~LAsgs~  508 (902)
T 2oaj_A          445 EYGTAFITGHSN------GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAV--DKISFAAE--------TLELAVSIE  508 (902)
T ss_dssp             SEEEEEEEEETT------SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCE--EEEEEETT--------TTEEEEEET
T ss_pred             ccCcEEEEecCC------CcEEEEECCCccccCCceEEeechhhcCCCCCCce--eEEEecCC--------CCeEEEEec
Confidence            344567777775      79999999998532  112    2     888876  46699999        679999999


Q ss_pred             CCeEEEEEcCCCCc--------------------------------------------eEEecccCCCCccccccccccc
Q 047036          384 DNRLCQWDMRDRSG--------------------------------------------IVQNMVKGDSPVLHWTQGHQFS  419 (634)
Q Consensus       384 D~tIklWD~R~~~~--------------------------------------------~Vq~l~gh~s~V~~~~~g~~y~  419 (634)
                      |++|++||+.++..                                            ++..+.+|              
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h--------------  574 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN--------------  574 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--------------
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC--------------
Confidence            99999999975420                                            12333333              


Q ss_pred             cCcceEEEEECCCCeEEEEECCCcEEEEecccccccc-----cccc-CCCCCeEEEEEC-----CCC---CEEEE-EcCC
Q 047036          420 RGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK-----TAFP-GLGSPITHVDVT-----YDG---KWILG-TTDT  484 (634)
Q Consensus       420 ~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~ak-----t~L~-GH~d~ItsVdfS-----pDG---k~LlS-S~D~  484 (634)
                       ...+++++|+|+|+||+|+.||+|||||+.+.. ..     ..+. ||...|++|+||     |||   ++|++ |.|+
T Consensus       575 -~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~-~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~  652 (902)
T 2oaj_A          575 -KGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPA-IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG  652 (902)
T ss_dssp             -SCSEEEEEECBTSEEEEEETTSEEEEEETTTTE-EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred             -CCcEEEEEecCCcEEEEEeCCCcEEEEECCCCe-EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence             335789999999999999999999999987642 21     3465 999999999999     886   89999 9999


Q ss_pred             cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036          485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd  564 (634)
                      +|++||+.+ ..+|+++..|.+|..-+.. ...+.+.|-+.. .+....=+...|.+........-.++++++..+.||+
T Consensus       653 tv~~wd~~p-~~~g~~~~~~~~~~~~~~~-~~v~~i~~~~~~-~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~  729 (902)
T 2oaj_A          653 EVITYKILP-ASGGKFDVQLMDITNVTSK-GPIHKIDAFSKE-TKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLIT  729 (902)
T ss_dssp             EEEEEEEEE-CGGGCEEEEEEEEEECCSS-CCCCEEEEEETT-TCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEEC
T ss_pred             cEEEEEEec-CCCCcEEEEecCceecCCC-CceEEEEeEecC-CCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEe
Confidence            999999843 2378899999998631101 122333332210 0000000001111100001122456666799999999


Q ss_pred             Chh
Q 047036          565 FQQ  567 (634)
Q Consensus       565 l~~  567 (634)
                      +.+
T Consensus       730 ~~~  732 (902)
T 2oaj_A          730 LGK  732 (902)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.9e-21  Score=223.94  Aligned_cols=232  Identities=11%  Similarity=0.041  Sum_probs=137.6

Q ss_pred             eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE--EecccCCCCccccccccccccCcceEEE
Q 047036          350 KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV--QNMVKGDSPVLHWTQGHQFSRGTNFQCF  427 (634)
Q Consensus       350 kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V--q~l~gh~s~V~~~~~g~~y~~~~~fssv  427 (634)
                      .||...|.  .++|+|+        ++.|+||+.|++||+||+..+. +.  ..+.-.-...+  ..+    +...+.++
T Consensus       432 ~G~~~~v~--sv~~spd--------g~~laSgs~DgtVrlWd~~~g~-~~~~~~~~~~l~~~~--~~~----h~~~V~sv  494 (902)
T 2oaj_A          432 KGGVRTKR--QKLPAEY--------GTAFITGHSNGSVRIYDASHGD-IQDNASFEVNLSRTL--NKA----KELAVDKI  494 (902)
T ss_dssp             CCSBCCCC--CCCCCSE--------EEEEEEEETTSEEEEEESSCCT-TTTTBCEEEEHHHHT--TCS----SSCCEEEE
T ss_pred             cCCcCCCC--ccccccc--------CcEEEEecCCCcEEEEECCCcc-ccCCceEEeechhhc--CCC----CCCceeEE
Confidence            44444432  2366676        6799999999999999998752 10  00000000000  001    23357899


Q ss_pred             EECCCC-eEEEEECCCcEEEEeccccc--------------------------------------------cccccccCC
Q 047036          428 ASTGDG-SIVVGSLDGKIRLYSKTSMR--------------------------------------------QAKTAFPGL  462 (634)
Q Consensus       428 a~s~dG-~IASGS~DGtIRLWD~~t~r--------------------------------------------~akt~L~GH  462 (634)
                      +|+|+| +||+|+.||+|||||+.+++                                            ++..+|.+|
T Consensus       495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h  574 (902)
T 2oaj_A          495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN  574 (902)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred             EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence            999999 89999999999999987642                                            124678899


Q ss_pred             CCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee-----eeec-CCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036          463 GSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK-----TGFS-GRMGNKIPAPRLLKLTPLDSHLAGTDNKIH  535 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~-----~gF~-gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft  535 (634)
                      ..+|++|+||||| +||+ +.|++|+|||+.    .+..+     .+|. ||.+.                  ...+.|+
T Consensus       575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~----~~~~~~~~~~~~~~~gh~~~------------------V~sv~Fs  631 (902)
T 2oaj_A          575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRR----GPAIIYMENIREISGAQSAC------------------VTCIEFV  631 (902)
T ss_dssp             SCSEEEEEECBTS-EEEEEETTSEEEEEETT----TTEEEEEEEGGGTCSSCCCC------------------EEEEEEE
T ss_pred             CCcEEEEEecCCc-EEEEEeCCCcEEEEECC----CCeEEEEeehhHhccccccc------------------eEEEEEE
Confidence            9999999999999 9998 899999999974    22222     1332 44321                  1246666


Q ss_pred             cccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeec-cccC--------
Q 047036          536 GGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESR-FMHD--------  605 (634)
Q Consensus       536 ~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~-f~~d--------  605 (634)
                      -....+   +|...++|++ +.|+.|++||+..-..|+...        .........+...|..+. |-.+        
T Consensus       632 ~~~~~~---Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~  700 (902)
T 2oaj_A          632 IMEYGD---DGYSSILMVCGTDMGEVITYKILPASGGKFDV--------QLMDITNVTSKGPIHKIDAFSKETKSSCLAT  700 (902)
T ss_dssp             EEECTT---SSSEEEEEEEEETTSEEEEEEEEECGGGCEEE--------EEEEEEECCSSCCCCEEEEEETTTCCBCBCB
T ss_pred             EEecCC---CCCcceEEEEEecCCcEEEEEEecCCCCcEEE--------EecCceecCCCCceEEEEeEecCCCCcccCC
Confidence            111111   0212356655 679999999982211332110        000111111234555444 3111        


Q ss_pred             -----ccccCCCCCCCEEEEcCCceeeeeccC
Q 047036          606 -----KFAVTDSPEAPLVVATPMKVSSISLSG  632 (634)
Q Consensus       606 -----~f~~~~~~~~~iivA~~~~v~~~~~~~  632 (634)
                           +..-+..++..||+++...|..+++..
T Consensus       701 ~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~  732 (902)
T 2oaj_A          701 IPKMQNLSKGLCIPGIVLITGFDDIRLITLGK  732 (902)
T ss_dssp             HHHHHGGGGTCCCCEEEEEECSSEEEEECTTC
T ss_pred             HHHHhccCCCCCCCeEEEEEeccceEEEeCcc
Confidence                 111123345679999999998888753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=3.1e-20  Score=199.37  Aligned_cols=265  Identities=11%  Similarity=0.023  Sum_probs=182.4

Q ss_pred             EEEeee-C--CCeEEEec---CeeeEEEccCCc----eecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          258 SLTLGA-L--DNSFLVSD---LGLQVYRNYNRG----IHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       258 ~LavG~-~--D~sfvv~G---~~igV~k~~~~g----l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      ..++.+ +  |+.+++.|   ..|.||....+.    +. ......+..|.       .|...+.+++++++|++++.+.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~~~  138 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE-VNVKSEFQVLA-------GPISDISWDFEGRRLCVVGEGR  138 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE-EEEEEEEECCS-------SCEEEEEECTTSSEEEEEECCS
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc-ccccchhhccc-------ccEEEEEEeCCCCEEEEeccCC
Confidence            667777 7  88888865   478888864320    00 01223344331       2344445555666677766542


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC-EEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE-STFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                        ...+.|++||  +++.+..+.+|...|  ..++|+|+        +. .+++|+.|++|++||++... .+..+.+|.
T Consensus       139 --~~~~~v~~~d--~~~~~~~~~~~~~~v--~~~~~~~~--------~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~  203 (615)
T 1pgu_A          139 --DNFGVFISWD--SGNSLGEVSGHSQRI--NACHLKQS--------RPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHH  203 (615)
T ss_dssp             --SCSEEEEETT--TCCEEEECCSCSSCE--EEEEECSS--------SSCEEEEEETTTEEEEEETTTBE-EEEEECSSS
T ss_pred             --CCccEEEEEE--CCCcceeeecCCccE--EEEEECCC--------CCcEEEEEeCCCcEEEEeCCCcc-eeeeecccC
Confidence              1225788888  789999999999976  56699998        44 89999999999999998754 456666554


Q ss_pred             CCccccccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccc-c---CCCCCeEEEEECCCCCEEEE
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAF-P---GLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L-~---GH~d~ItsVdfSpDGk~LlS  480 (634)
                      .            ....+.+++++|+ | +||+|+.||.|++||+.+++ ....+ .   +|..+|++|+|+ +|++|++
T Consensus       204 ~------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~  269 (615)
T 1pgu_A          204 K------------QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFAT  269 (615)
T ss_dssp             C------------TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred             C------------CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEE
Confidence            3            0114689999999 8 79999999999999998864 66667 6   899999999999 9999999


Q ss_pred             -EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCe
Q 047036          481 -TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKF  559 (634)
Q Consensus       481 -S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~  559 (634)
                       +.|++|++||+.    +++.+..|..+....                   ........|+.    +  ...++++.++.
T Consensus       270 ~~~d~~i~~wd~~----~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~----~--~~l~~~~~~g~  320 (615)
T 1pgu_A          270 VGADATIRVWDVT----TSKCVQKWTLDKQQL-------------------GNQQVGVVATG----N--GRIISLSLDGT  320 (615)
T ss_dssp             EETTSEEEEEETT----TTEEEEEEECCTTCG-------------------GGCEEEEEEEE----T--TEEEEEETTSC
T ss_pred             EcCCCcEEEEECC----CCcEEEEEcCCCCcc-------------------cCceeEEEeCC----C--CeEEEEECCCC
Confidence             889999999986    577666666553110                   00111122221    2  34556678999


Q ss_pred             EEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccC
Q 047036          560 SVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHD  605 (634)
Q Consensus       560 viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d  605 (634)
                      |.+||+..   ++.             .+.+..+...|..+.| .+
T Consensus       321 i~~~d~~~---~~~-------------~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          321 LNFYELGH---DEV-------------LKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             EEEEETTE---EEE-------------EEEECCCSSCEEEEET-TT
T ss_pred             EEEEECCC---CcE-------------EEEEeCCCCCEEEEEe-cC
Confidence            99999874   221             1355666666666666 44

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.88  E-value=1.1e-20  Score=198.67  Aligned_cols=215  Identities=14%  Similarity=0.162  Sum_probs=160.0

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      .++++|++++.|      ++|++||+.+|+++..+.+|...|    .+++.+        +..+++|+.|++|++||+++
T Consensus       141 ~d~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h~~~v----~~l~~~--------~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          141 YDDQKIVSGLRD------NTIKIWDKNTLECKRILTGHTGSV----LCLQYD--------ERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             CCSSEEEEEESS------SCEEEEESSSCCEEEEECCCSSCE----EEEECC--------SSEEEEEETTSCEEEEESSS
T ss_pred             ECCCEEEEEeCC------CeEEEEeCCCCeEEEEEcCCCCcE----EEEEEC--------CCEEEEEcCCCeEEEEECCC
Confidence            356778888765      799999999999999999999865    244445        57999999999999999998


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccc---ccccCCCCCeEEEEE
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK---TAFPGLGSPITHVDV  471 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~ak---t~L~GH~d~ItsVdf  471 (634)
                      +. .+..+.+|...               +.+++++ ++.||+|+.||+|++||+.+.+ ..   ..+.+|..+|++|+|
T Consensus       203 ~~-~~~~~~~h~~~---------------v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          203 GE-MLNTLIHHCEA---------------VLHLRFN-NGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF  264 (435)
T ss_dssp             CC-EEEEECCCCSC---------------EEEEECC-TTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEEE
T ss_pred             Cc-EEEEEcCCCCc---------------EEEEEEc-CCEEEEeeCCCcEEEEeCCCCC-CceeeeEecCCCCcEEEEEe
Confidence            75 46777665543               5677776 4599999999999999988753 33   567899999999999


Q ss_pred             CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036          472 TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER  550 (634)
Q Consensus       472 SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~  550 (634)
                        +|++|++ +.|++|++||+.    +++.+..|.+|.+..                  ..+.|     +     +  ..
T Consensus       265 --~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v------------------~~~~~-----~-----~--~~  308 (435)
T 1p22_A          265 --DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGI------------------ACLQY-----R-----D--RL  308 (435)
T ss_dssp             --ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCE------------------EEEEE-----E-----T--TE
T ss_pred             --CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcE------------------EEEEe-----C-----C--CE
Confidence              8999999 899999999986    677787787775311                  01222     2     2  24


Q ss_pred             EEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEE
Q 047036          551 HLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLV  618 (634)
Q Consensus       551 ~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~ii  618 (634)
                      .++++.|+.|.+||+..   ++.             ...+..+...|..+.| .+++.+..+.|..|.
T Consensus       309 l~~g~~dg~i~iwd~~~---~~~-------------~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~  359 (435)
T 1p22_A          309 VVSGSSDNTIRLWDIEC---GAC-------------LRVLEGHEELVRCIRF-DNKRIVSGAYDGKIK  359 (435)
T ss_dssp             EEEEETTSCEEEEETTT---CCE-------------EEEECCCSSCEEEEEC-CSSEEEEEETTSCEE
T ss_pred             EEEEeCCCeEEEEECCC---CCE-------------EEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEE
Confidence            55567899999999974   322             2456778888888887 555533333344443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=1.7e-20  Score=186.92  Aligned_cols=222  Identities=9%  Similarity=0.091  Sum_probs=150.0

Q ss_pred             CCcEEEeee-CC---CeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          255 GVQSLTLGA-LD---NSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       255 ~~~~LavG~-~D---~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      .....++.+ ++   +.+++.|   ..|.||.....+..   ....+.+|.       .+...+.+++++++|++++.| 
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~-------~~v~~~~~~~~~~~l~s~~~d-  107 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---IPKAQQMHT-------GPVLDVCWSDDGSKVFTASCD-  107 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---EEEEEEECS-------SCEEEEEECTTSSEEEEEETT-
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---eEEEecccc-------CCEEEEEECcCCCEEEEEcCC-
Confidence            345778888 66   4777765   47999997653411   112344442       233344445566677777765 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEE--ecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDI--TNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsf--sPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                           ++|++||+.+++++. +.+|...|  ..++|  +|+        +..+++|+.|++|++||++++.. +..+..|
T Consensus       108 -----g~v~iwd~~~~~~~~-~~~~~~~v--~~~~~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~  170 (368)
T 3mmy_A          108 -----KTAKMWDLSSNQAIQ-IAQHDAPV--KTIHWIKAPN--------YSCVMTGSWDKTLKFWDTRSSNP-MMVLQLP  170 (368)
T ss_dssp             -----SEEEEEETTTTEEEE-EEECSSCE--EEEEEEECSS--------CEEEEEEETTSEEEEECSSCSSC-SEEEECS
T ss_pred             -----CcEEEEEcCCCCcee-eccccCce--EEEEEEeCCC--------CCEEEEccCCCcEEEEECCCCcE-EEEEecC
Confidence                 799999999999877 66798876  45688  666        57899999999999999998653 3455433


Q ss_pred             CCC------------------cccccc--c-c-----ccccCcceEEEEECCCC-e----EEEEECCCcEEEEeccccc-
Q 047036          406 DSP------------------VLHWTQ--G-H-----QFSRGTNFQCFASTGDG-S----IVVGSLDGKIRLYSKTSMR-  453 (634)
Q Consensus       406 ~s~------------------V~~~~~--g-~-----~y~~~~~fssva~s~dG-~----IASGS~DGtIRLWD~~t~r-  453 (634)
                      ...                  +..|..  . .     .........++++.+++ .    ||+|+.||.|++||+.... 
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence            210                  000100  0 0     00011233455554333 2    9999999999999987642 


Q ss_pred             -cccccccCCCC------------CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          454 -QAKTAFPGLGS------------PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       454 -~akt~L~GH~d------------~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                       .....+.+|..            +|++|+|+|||++|++ +.|++|+|||+.    +++++..|.+|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~  315 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD----ARTKLKTSEQLD  315 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT----TTEEEEECCCCS
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC----CCcEEEEecCCC
Confidence             23456677776            8999999999999999 899999999986    677777777665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=1.4e-20  Score=198.84  Aligned_cols=221  Identities=8%  Similarity=0.048  Sum_probs=153.0

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCC----------CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC-EEEEEeCCCe
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIET----------GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE-STFLGLDDNR  386 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleT----------GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~t  386 (634)
                      ++|++++.+      ++|++||+.+          ++.+.++.+|...|  ..++|+|+        +. .|++|+.|++
T Consensus       142 ~~lat~~~d------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~--------~~~~l~s~~~dg~  205 (430)
T 2xyi_A          142 CVIATKTPS------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG--YGLSWNPN--------LNGYLLSASDDHT  205 (430)
T ss_dssp             EEEEEECSS------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC--CCEEECTT--------STTEEEEECTTSC
T ss_pred             cEEEEECCC------CcEEEEECCCcccccCccccCCCcEEecCCCCCe--EEEEeCCC--------CCCeEEEEeCCCe
Confidence            455666554      7899999987          78899999999976  45699998        34 9999999999


Q ss_pred             EEEEEcCCCCc---e---EEecccCCCCccccccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccc--ccc
Q 047036          387 LCQWDMRDRSG---I---VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMR--QAK  456 (634)
Q Consensus       387 IklWD~R~~~~---~---Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r--~ak  456 (634)
                      |++||++.+..   .   ...+.+|               ...+.+++++| ++ .||+|+.||.|++||+.+..  ...
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~h---------------~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTGH---------------TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECCC---------------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             EEEEeCCCCCCCCceeccceeecCC---------------CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence            99999987421   1   1222222               23478899998 45 78999999999999988642  245


Q ss_pred             ccccCCCCCeEEEEECCCCCE-EEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccc
Q 047036          457 TAFPGLGSPITHVDVTYDGKW-ILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKI  534 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDGk~-LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~F  534 (634)
                      ..+.+|..+|++|+|+|+|++ ||+ +.|++|+|||++.   .++.+..|.+|.+..                  ..+.|
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v------------------~~i~~  329 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEI------------------FQVQW  329 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCE------------------EEEEE
T ss_pred             eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCE------------------EEEEE
Confidence            567799999999999999984 667 8899999999862   244455566554210                  12444


Q ss_pred             ccccccccccCCCCceEE-EEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          535 HGGHFSWVTENGKQERHL-VATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       535 t~a~Fs~~t~~g~~E~~I-vtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                      +|.        +  ...| +++.++.|.|||+......... - ..+.+.....+.+..+...|.++.|
T Consensus       330 sp~--------~--~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          330 SPH--------N--ETILASSGTDRRLHVWDLSKIGEEQST-E-DAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             CSS--------C--TTEEEEEETTSCCEEEEGGGTTCCCCH-H-HHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             CCC--------C--CCEEEEEeCCCcEEEEeCCCCccccCc-c-ccccCCcceEEEcCCCCCCceEEEE
Confidence            443        2  2344 4467999999999863321100 0 0011111223566777888888777

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.3e-20  Score=212.81  Aligned_cols=199  Identities=7%  Similarity=0.035  Sum_probs=147.6

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      +.+.++.+ +|+.+++.|   ..|.||.......   .....+.+|. ++.+..|+|+      .++++|++++.|    
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---~~~~~l~~h~~~V~~l~~s~~------~~~~~l~s~s~D----   76 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHP------KFGTILASCSYD----   76 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---EEEEEECCCSSCEEEEEECCT------TSCSEEEEEETT----
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---ccceeccCCcCceEEEEecCC------CCCCEEEEEeCC----
Confidence            34777777 777777765   4788898653221   1233455552 2244444443      126778888775    


Q ss_pred             CCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-eEEecccCCC
Q 047036          331 QAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-IVQNMVKGDS  407 (634)
Q Consensus       331 ~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-~Vq~l~gh~s  407 (634)
                        ++|++||+.+|+  .+..+.+|...|  ..++|+|+..      +..+++|+.|++|++||++.+.. ....+.+|. 
T Consensus        77 --g~I~vwd~~~~~~~~~~~~~~h~~~V--~~v~~sp~~~------~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~-  145 (753)
T 3jro_A           77 --GKVLIWKEENGRWSQIAVHAVHSASV--NSVQWAPHEY------GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-  145 (753)
T ss_dssp             --SCEEEEEEETTEEEEEEEECCCSSCE--EEEEECCGGG------CSEEEEEETTSEEEEEECCSSSCCCCEEEECCS-
T ss_pred             --CeEEEEECCCCcccccccccCCCCCe--EEEEECCCCC------CCEEEEEeCCCcEEEEEeecCCCcceeEeecCC-
Confidence              799999999998  888999999976  5669999721      46899999999999999997632 123333333 


Q ss_pred             CccccccccccccCcceEEEEECC-------------CC-eEEEEECCCcEEEEeccccc---cccccccCCCCCeEEEE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTG-------------DG-SIVVGSLDGKIRLYSKTSMR---QAKTAFPGLGSPITHVD  470 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~-------------dG-~IASGS~DGtIRLWD~~t~r---~akt~L~GH~d~ItsVd  470 (634)
                                    ..+.+++++|             +| .||+|+.||+|++||+.+..   .....+.+|..+|++|+
T Consensus       146 --------------~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          146 --------------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             --------------SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             --------------CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence                          3468888988             45 89999999999999987642   24457889999999999


Q ss_pred             ECCC---CCEEEE-EcCCcEEEEEcc
Q 047036          471 VTYD---GKWILG-TTDTYLILICTL  492 (634)
Q Consensus       471 fSpD---Gk~LlS-S~D~tIrLWD~~  492 (634)
                      |+|+   |++|++ +.|++|++||+.
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCC
Confidence            9999   999999 899999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=7.1e-20  Score=182.42  Aligned_cols=247  Identities=11%  Similarity=0.041  Sum_probs=163.9

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcc-eEEecCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETN-MMLMSPLKDGKP  330 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~-mllsss~d~~~~  330 (634)
                      ....++.+ +|+.+++.|   ..|.||.........  ....+.+|.       .+...+.++++++ +|++++.|    
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d----   78 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--DLLQSLRYK-------HPLLCCNFIDNTDLQIYVGTVQ----   78 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--EEEEEEECS-------SCEEEEEEEESSSEEEEEEETT----
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc--cceeeeecC-------CceEEEEECCCCCcEEEEEcCC----
Confidence            34677777 677766654   578899875543100  112222331       2334444555667 67777765    


Q ss_pred             CCCcEEEEeC-CCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC---------CCce
Q 047036          331 QAPGVQQLDI-ETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD---------RSGI  398 (634)
Q Consensus       331 ~~~TIrlWDl-eTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~---------~~~~  398 (634)
                        ++|++||+ .+++. ..+.+  |...|  ..++|+| +        ..+++|+.|++|++||++.         +.. 
T Consensus        79 --g~i~~wd~~~~~~~-~~~~~~~~~~~v--~~l~~~~-~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-  143 (342)
T 1yfq_A           79 --GEILKVDLIGSPSF-QALTNNEANLGI--CRICKYG-D--------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-  143 (342)
T ss_dssp             --SCEEEECSSSSSSE-EECBSCCCCSCE--EEEEEET-T--------TEEEEEETTSEEEEECHHHHTTBCEEEEESC-
T ss_pred             --CeEEEEEeccCCce-EeccccCCCCce--EEEEeCC-C--------CEEEEEcCCCeEEEEcccccccccccccCCe-
Confidence              68999999 88876 78899  99876  4569998 2        5899999999999999986         321 


Q ss_pred             EEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccc-ccc-ccccccCCCCCeEEEEECC-CC
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTS-MRQ-AKTAFPGLGSPITHVDVTY-DG  475 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t-~r~-akt~L~GH~d~ItsVdfSp-DG  475 (634)
                      +..+                .....+.++++++++ |++|+.||.|++||+.+ +.. .......|..+|++|+|+| +|
T Consensus       144 ~~~~----------------~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  206 (342)
T 1yfq_A          144 SNNT----------------KVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             SSSS----------------SSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeEE----------------eeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence            1222                123457899999988 99999999999999876 432 2234557899999999999 99


Q ss_pred             CEEEE-EcCCcEEEEEcccc--cCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE
Q 047036          476 KWILG-TTDTYLILICTLFS--DKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL  552 (634)
Q Consensus       476 k~LlS-S~D~tIrLWD~~~~--~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I  552 (634)
                      ++|++ +.|+.|+||+....  ...++.+..|.+|......        ..|.      ...+...|++.   +  ...+
T Consensus       207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~------~~i~~~~~s~~---~--~~l~  267 (342)
T 1yfq_A          207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD--------TNLA------YPVNSIEFSPR---H--KFLY  267 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC--------CSSC------CCEEEEEECTT---T--CCEE
T ss_pred             CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc--------cccc------eeEEEEEEcCC---C--CEEE
Confidence            99999 89999999998631  0013555666666431100        0000      11122234321   2  2344


Q ss_pred             EEEcCCeEEEEeCh
Q 047036          553 VATVGKFSVIWDFQ  566 (634)
Q Consensus       553 vtStg~~viiWdl~  566 (634)
                      +++.++.|.+||+.
T Consensus       268 ~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          268 TAGSDGIISCWNLQ  281 (342)
T ss_dssp             EEETTSCEEEEETT
T ss_pred             EecCCceEEEEcCc
Confidence            55779999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.86  E-value=1.7e-19  Score=189.19  Aligned_cols=232  Identities=12%  Similarity=0.093  Sum_probs=167.6

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      .+.+|++ +|+.+++.|   ..|.||......     ....+.+|..       +...+  ..++.+|++++.|      
T Consensus       149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----~~~~~~~h~~-------~v~~~--s~~~~~l~sgs~d------  208 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSA-------RVGSL--SWNSYILSSGSRS------  208 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSS-------CEEEE--EEETTEEEEEETT------
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----EEEEEeCCCC-------ceEEE--eeCCCEEEEEeCC------
Confidence            4778888 888888876   478889865542     2334555521       11222  2345667777765      


Q ss_pred             CcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce---EEecccCCCC
Q 047036          333 PGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI---VQNMVKGDSP  408 (634)
Q Consensus       333 ~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~---Vq~l~gh~s~  408 (634)
                      +++++||+.+ ...+.++.+|...|  +.+.++|+        +.++++|+.|+.|++||.+.+...   +.....|   
T Consensus       209 ~~i~~~d~~~~~~~~~~~~~h~~~~--~~~~~~~~--------g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~---  275 (420)
T 4gga_A          209 GHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPD--------GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---  275 (420)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC---
T ss_pred             CceeEeeecccceeeEEecccccce--eeeeecCC--------CCeeeeeeccccceEEeeccccccceeeeeeccc---
Confidence            7999999886 46778999999976  56799998        689999999999999999876431   2222222   


Q ss_pred             ccccccccccccCcceEEEEECCCC--eEEE--EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E--
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG--SIVV--GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T--  481 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG--~IAS--GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S--  481 (634)
                                  ...+.+++++|.+  .||+  ||.|++|||||+.+++ ....+.. ...|.++.|+|+++.|++ +  
T Consensus       276 ------------~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          276 ------------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDA-HSQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             ------------SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-EEEEEEC-SSCEEEEEEETTTTEEEEEECT
T ss_pred             ------------CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-cceeecc-ccceeeeeecCCCCeEEEEEec
Confidence                        2346788898865  4555  5689999999998874 5566664 457999999999999997 4  


Q ss_pred             cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEE
Q 047036          482 TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSV  561 (634)
Q Consensus       482 ~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vi  561 (634)
                      .|++|+|||+.    +++++..|.||.+..                  ..+.|+|+        |  ...+.+|.|+.|+
T Consensus       342 ~d~~I~iwd~~----~~~~v~~l~gH~~~V------------------~~l~~spd--------g--~~l~S~s~D~tvr  389 (420)
T 4gga_A          342 AQNQLVIWKYP----TMAKVAELKGHTSRV------------------LSLTMSPD--------G--ATVASAAADETLR  389 (420)
T ss_dssp             TTCCEEEEETT----TCCEEEEECCCSSCE------------------EEEEECTT--------S--SCEEEEETTTEEE
T ss_pred             CCCEEEEEECC----CCcEEEEEcCCCCCE------------------EEEEEcCC--------C--CEEEEEecCCeEE
Confidence            58999999985    788999999987521                  12455554        3  2344447899999


Q ss_pred             EEeChh
Q 047036          562 IWDFQQ  567 (634)
Q Consensus       562 iWdl~~  567 (634)
                      +||+..
T Consensus       390 iWdv~~  395 (420)
T 4gga_A          390 LWRCFE  395 (420)
T ss_dssp             EECCSC
T ss_pred             EEECCC
Confidence            999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.86  E-value=1.4e-19  Score=177.92  Aligned_cols=132  Identities=12%  Similarity=0.194  Sum_probs=110.0

Q ss_pred             CcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      ++|++||+++|++++.+++  |...|  ..++|+|+        ++.+++|+.|++|++||+++++ .++.+.+|...  
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V--~~v~~~~~--------~~~l~sgs~Dg~v~iw~~~~~~-~~~~~~~h~~~--  111 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYI--SSVAWIKE--------GNYLAVGTSSAEVQLWDVQQQK-RLRNMTSHSAR--  111 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCE--EEEEECTT--------SSEEEEEETTSEEEEEETTTTE-EEEEEECCSSC--
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeE--EEEEECCC--------CCEEEEEECCCcEEEeecCCce-eEEEecCccce--
Confidence            6999999999999998875  55544  56799998        6899999999999999999865 46777666543  


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL  488 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL  488 (634)
                                   +.++  +.++ .|++|+.++.+++|+..........+.+|...+..+.++++|++|++ +.|++|+|
T Consensus       112 -------------~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  176 (318)
T 4ggc_A          112 -------------VGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV  176 (318)
T ss_dssp             -------------EEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -------------EEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence                         2333  3344 79999999999999987654455678899999999999999999999 89999999


Q ss_pred             EEcc
Q 047036          489 ICTL  492 (634)
Q Consensus       489 WD~~  492 (634)
                      ||+.
T Consensus       177 wd~~  180 (318)
T 4ggc_A          177 WPSA  180 (318)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.86  E-value=4.4e-20  Score=193.99  Aligned_cols=180  Identities=14%  Similarity=0.224  Sum_probs=141.4

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      ++++|++++.|      ++|++||+.+|+++.++.+|...|  ..++|++          ..+++|+.|++|++||++++
T Consensus       128 ~g~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~----------~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          128 CGNRIVSGSDD------NTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRD----------NIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             ETTEEEEEETT------SCEEEEETTTCCEEEECCCCSSCE--EEEEEET----------TEEEEEETTSCEEEEETTTT
T ss_pred             cCCEEEEEECC------CcEEEEECCCCcEEEEEcCCCCCE--EEEEecC----------CEEEEEeCCCeEEEEECCcC
Confidence            35677777765      799999999999999999999976  4457763          58999999999999999986


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG  475 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG  475 (634)
                      . .+..+.+|..+               +.+++++ +..||+|+.||+|++||+.+++ ....+.+|..+|++++|  +|
T Consensus       190 ~-~~~~~~~h~~~---------------v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          190 E-CIHTLYGHTST---------------VRCMHLH-EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             E-EEEEECCCSSC---------------EEEEEEE-TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CS
T ss_pred             c-EEEEECCCCCc---------------EEEEEec-CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CC
Confidence            4 45777666543               4677774 3489999999999999998864 67788999999999999  88


Q ss_pred             CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036          476 KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA  554 (634)
Q Consensus       476 k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt  554 (634)
                      ++|++ +.|++|++||+.    .++.+..+.+|.+..                  ..+.|     +     +  ...+++
T Consensus       250 ~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v------------------~~~~~-----~-----~--~~l~~~  295 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRV------------------YSLQF-----D-----G--IHVVSG  295 (445)
T ss_dssp             SCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCE------------------EEEEE-----C-----S--SEEEEE
T ss_pred             CEEEEEcCCCEEEEEECC----CCcEeEEecCCCCce------------------EEEEE-----C-----C--CEEEEE
Confidence            99998 899999999986    577777777665310                  11222     2     2  245556


Q ss_pred             EcCCeEEEEeChh
Q 047036          555 TVGKFSVIWDFQQ  567 (634)
Q Consensus       555 Stg~~viiWdl~~  567 (634)
                      +.|+.|.+||+..
T Consensus       296 ~~d~~i~i~d~~~  308 (445)
T 2ovr_B          296 SLDTSIRVWDVET  308 (445)
T ss_dssp             ETTSCEEEEETTT
T ss_pred             eCCCeEEEEECCC
Confidence            7899999999873

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3e-20  Score=196.65  Aligned_cols=197  Identities=13%  Similarity=0.125  Sum_probs=145.2

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc---EEEEEeccCC----------------------------
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK---IVTEWKFEKD----------------------------  354 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK---~V~~lkgH~~----------------------------  354 (634)
                      .|...+.++.++++|+++..       ++|++||+++|+   ++..|..|..                            
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~-------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIK-------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK   77 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEET-------TEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeC-------CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence            35555556666776666643       589999999999   8999986543                            


Q ss_pred             --------------------------CcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcC--CCCceEEecccC
Q 047036          355 --------------------------GTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMR--DRSGIVQNMVKG  405 (634)
Q Consensus       355 --------------------------~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R--~~~~~Vq~l~gh  405 (634)
                                                .|  ..++|+|+        +..| ++|+.|++|++||++  .+. .++.+..|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~d--------~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~  146 (450)
T 2vdu_B           78 SNKGDSIKRTAAKVPSPGLGAPPIYSYI--RNLRLTSD--------ESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRF  146 (450)
T ss_dssp             ----------------------CCCCCE--EEEEECTT--------SSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEE
T ss_pred             cCcCccccccCccccCCCCCCCccCCce--EEEEEcCC--------CCEEEEEECCCCeEEEEECcCCCCc-eeeeeecc
Confidence                                      34  56799998        5664 999999999999998  554 34555422


Q ss_pred             CCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc----ccccCCCCCeEEEEECCC---CCE
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK----TAFPGLGSPITHVDVTYD---GKW  477 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak----t~L~GH~d~ItsVdfSpD---Gk~  477 (634)
                      .             ....+++++++|+| +||+|+.||.|++|++.+++ ..    ..+.+|..+|++|+|+||   |++
T Consensus       147 ~-------------~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  212 (450)
T 2vdu_B          147 C-------------FSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP-EEKFTQEPILGHVSMLTDVHLIKDSDGHQF  212 (450)
T ss_dssp             E-------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC-CSSCCCCCSEECSSCEEEEEEEECTTSCEE
T ss_pred             c-------------CCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc-cccccceeeecccCceEEEEEcCCCCCCcE
Confidence            1             12347899999999 89999999999999987753 33    378899999999999999   999


Q ss_pred             EEE-EcCCcEEEEEcccccCCCCeeee-ecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE
Q 047036          478 ILG-TTDTYLILICTLFSDKDGKTKTG-FSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT  555 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~~~~~~G~~~~g-F~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS  555 (634)
                      |++ +.|++|+|||+.    .++++.. +.+|.+..                  ..+.|+ .        |  ...++++
T Consensus       213 l~s~~~d~~i~vwd~~----~~~~~~~~~~~h~~~v------------------~~~~~s-d--------~--~~l~s~~  259 (450)
T 2vdu_B          213 IITSDRDEHIKISHYP----QCFIVDKWLFGHKHFV------------------SSICCG-K--------D--YLLLSAG  259 (450)
T ss_dssp             EEEEETTSCEEEEEES----CTTCEEEECCCCSSCE------------------EEEEEC-S--------T--TEEEEEE
T ss_pred             EEEEcCCCcEEEEECC----CCceeeeeecCCCCce------------------EEEEEC-C--------C--CEEEEEe
Confidence            999 899999999975    5665555 33454210                  123343 2        2  2344557


Q ss_pred             cCCeEEEEeChh
Q 047036          556 VGKFSVIWDFQQ  567 (634)
Q Consensus       556 tg~~viiWdl~~  567 (634)
                      .|+.|.+||+..
T Consensus       260 ~d~~v~vwd~~~  271 (450)
T 2vdu_B          260 GDDKIFAWDWKT  271 (450)
T ss_dssp             SSSEEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence            899999999873

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.3e-19  Score=182.79  Aligned_cols=190  Identities=12%  Similarity=0.061  Sum_probs=132.6

Q ss_pred             EEeeeCCCeEEEec--CeeeEEEccCCceecceeEEEec-CC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          259 LTLGALDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFD-GG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       259 LavG~~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~-~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      |++|+.|+++.++.  ..+.+|......     ....+. +| .++.+.+|+|.      .+++++++++.|      ++
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~------~~~~~l~s~s~d------g~  150 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNK-----VLREIEVDSANEIIYMYGHNE------VNTEYFIWADNR------GT  150 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCC-----EEEEEECCCSSCEEEEECCC---------CCEEEEEETT------CC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcc-----eeEEeecCCCCCEEEEEcCCC------CCCCEEEEEeCC------Cc
Confidence            77777888888874  456666654432     111111 22 11233444440      055677777765      79


Q ss_pred             EEEEeCCCCcEEEEEeccCC-CcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc-CCCCcccc
Q 047036          335 VQQLDIETGKIVTEWKFEKD-GTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK-GDSPVLHW  412 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~-~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g-h~s~V~~~  412 (634)
                      |++||+++|+++..+.+|.. .|  ..++|+|+        +.++++|+.|++|++||++++..+...+.+ |..     
T Consensus       151 i~~wd~~~~~~~~~~~~~~~~~i--~~~~~~pd--------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-----  215 (343)
T 3lrv_A          151 IGFQSYEDDSQYIVHSAKSDVEY--SSGVLHKD--------SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-----  215 (343)
T ss_dssp             EEEEESSSSCEEEEECCCSSCCC--CEEEECTT--------SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-----
T ss_pred             EEEEECCCCcEEEEEecCCCCce--EEEEECCC--------CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-----
Confidence            99999999999888866544 44  56799998        689999999999999999987654255654 443     


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc---CCCCCeE--EEEECCCCCEEEE-Ec-CC
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP---GLGSPIT--HVDVTYDGKWILG-TT-DT  484 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~---GH~d~It--sVdfSpDGk~LlS-S~-D~  484 (634)
                                .+++++|+|+| +||+|+ |++|||||+++.+ ....+.   +|..++.  +|+|+|+|++|++ +. |+
T Consensus       216 ----------~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~  283 (343)
T 3lrv_A          216 ----------KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV-GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN  283 (343)
T ss_dssp             ----------CEEEEEECTTSSEEEEEE-SSBEEEEETTSST-TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred             ----------CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC-cceeecccccccccccceEEEECCCCCEEEEecCCCC
Confidence                      46899999999 799999 5599999998753 433343   3555665  5999999999999 77 99


Q ss_pred             cEEEEEcc
Q 047036          485 YLILICTL  492 (634)
Q Consensus       485 tIrLWD~~  492 (634)
                      .|+||+..
T Consensus       284 ~i~v~~~~  291 (343)
T 3lrv_A          284 SLTIYKFD  291 (343)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEc
Confidence            99999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.85  E-value=1.9e-19  Score=179.35  Aligned_cols=219  Identities=13%  Similarity=0.153  Sum_probs=140.6

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCC-CcEE-EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIET-GKIV-TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleT-GK~V-~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      +++|++++.|      ++|++||+.+ ++.+ ..+.+|...|  ..++|+|+        ++.|++|+.|++|++||+++
T Consensus        54 g~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           54 GNFLIAGSWA------NDVRCWEVQDSGQTIPKAQQMHTGPV--LDVCWSDD--------GSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             SEEEEEEETT------SEEEEEEECTTSCEEEEEEEECSSCE--EEEEECTT--------SSEEEEEETTSEEEEEETTT
T ss_pred             ceEEEEECCC------CcEEEEEcCCCCceeEEEeccccCCE--EEEEECcC--------CCEEEEEcCCCcEEEEEcCC
Confidence            3667777765      7999999998 7666 8899999986  46699998        67999999999999999997


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEE--CCCC-eEEEEECCCcEEEEeccccccccccccCCC--------
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAS--TGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLG--------  463 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~--s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~--------  463 (634)
                      +.. +. +.+|..               .+.++++  ++++ +|++|+.||+|+|||+.+++ ....+..|.        
T Consensus       118 ~~~-~~-~~~~~~---------------~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~  179 (368)
T 3mmy_A          118 NQA-IQ-IAQHDA---------------PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPERCYCADVI  179 (368)
T ss_dssp             TEE-EE-EEECSS---------------CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSSCEEEEEEE
T ss_pred             CCc-ee-eccccC---------------ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCCCceEEEec
Confidence            643 33 333433               4678888  8888 69999999999999988753 455555443        


Q ss_pred             ---------------------------------CCeEEEEECCCCCE----EEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          464 ---------------------------------SPITHVDVTYDGKW----ILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       464 ---------------------------------d~ItsVdfSpDGk~----LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                                                       ..+..+++.+++.+    |++ +.|+.|+|||+.... ....+..|.
T Consensus       180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~  258 (368)
T 3mmy_A          180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN-PAKDNFTFK  258 (368)
T ss_dssp             TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC-HHHHSEEEE
T ss_pred             CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC-ccccceeee
Confidence                                             33444555444443    555 667777777754210 003334455


Q ss_pred             CCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcce
Q 047036          506 GRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSC  585 (634)
Q Consensus       506 gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~  585 (634)
                      +|.....+     ...+.|      ....+...|++.   +  ...++++.|+.|.+||+..   ++.            
T Consensus       259 ~~~~~~~~-----~~~~~~------~~~v~~~~~sp~---~--~~l~s~~~dg~i~iwd~~~---~~~------------  307 (368)
T 3mmy_A          259 CHRSNGTN-----TSAPQD------IYAVNGIAFHPV---H--GTLATVGSDGRFSFWDKDA---RTK------------  307 (368)
T ss_dssp             CSEEC---------CCCEE------ECCEEEEEECTT---T--CCEEEEETTSCEEEEETTT---TEE------------
T ss_pred             eeeccccc-----cccccc------ccceEEEEEecC---C--CEEEEEccCCeEEEEECCC---CcE------------
Confidence            44421100     000000      012233345431   2  2455557899999999873   222            


Q ss_pred             eeEEEeccCCCeeeecc
Q 047036          586 YCYKIVLKDESIVESRF  602 (634)
Q Consensus       586 ~~Y~i~~~~~~i~~~~f  602 (634)
                       ...+..+...|.++.|
T Consensus       308 -~~~~~~~~~~v~~~~~  323 (368)
T 3mmy_A          308 -LKTSEQLDQPISACCF  323 (368)
T ss_dssp             -EEECCCCSSCEEEEEE
T ss_pred             -EEEecCCCCCceEEEE
Confidence             1466778888888887

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.6e-20  Score=205.73  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=117.5

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC-----CcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD-----GTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~-----~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      ...+-+++++.+|++++.|      ++|++||.++  ++..+. |..     .|  ..++||||        |+.||+|+
T Consensus        88 V~~vawSPdG~~LAs~s~d------g~V~iwd~~~--~l~~l~-~~~~~~~~sv--~svafSPD--------G~~LAsgs  148 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNN------GNVSVFKDNK--MLTNLD-SKGNLSSRTY--HCFEWNPI--------ESSIVVGN  148 (588)
T ss_dssp             EEEEEECSSSSCEEEEETT------SCEEEEETTE--EEEECC-CSSCSTTTCE--EEEEECSS--------SSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCC------CcEEEEeCCc--eeeecc-CCCccccccE--EEEEEcCC--------CCEEEEEc
Confidence            4455556667777777765      7999999764  888888 775     35  45699999        67999999


Q ss_pred             CCCeEEEEEcCCCCc------eEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccc
Q 047036          383 DDNRLCQWDMRDRSG------IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK  456 (634)
Q Consensus       383 ~D~tIklWD~R~~~~------~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~ak  456 (634)
                      .|++|++||++.+..      .++++..|..       ||    ...+.+++++|+| ||++|.|++|||||+.+.. .+
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~-------gh----~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~-~~  215 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDA-------GS----KDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS-HQ  215 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCT-------TC----CCCEEEEEEETTE-EEEEETTCCEEEECCCSSS-SC
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccc-------cc----cccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc-cc
Confidence            999999999997642      3566632221       11    1246899999999 9999999999999998743 32


Q ss_pred             ---ccc-cCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          457 ---TAF-PGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       457 ---t~L-~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                         .+| ++|...|.+|+|+  |++||++++++|+|||+.
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~  253 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLK  253 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETT
T ss_pred             cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECC
Confidence               346 5899999999999  799999889999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.3e-20  Score=210.54  Aligned_cols=197  Identities=9%  Similarity=0.065  Sum_probs=143.7

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCC--CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIE--TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDle--TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      ++++|++++.|      ++|++||+.  +++++.++.+|...|  ..++|+|+..      +..+++|+.|++|++||++
T Consensus        20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~l~~h~~~V--~~l~~s~~~~------~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A           20 YGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKF------GTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             SSCCEEEEETT------TEEEEEEEETTEEEEEEEECCCSSCE--EEEEECCTTS------CSEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECC------CcEEEEecCCCCCccceeccCCcCce--EEEEecCCCC------CCEEEEEeCCCeEEEEECC
Confidence            34567777665      799999998  678999999999976  4569988622      4799999999999999999


Q ss_pred             CCCc-eEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccccc-cccccccCCCCCeEE
Q 047036          394 DRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITH  468 (634)
Q Consensus       394 ~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~Its  468 (634)
                      ++.. .+..+.+|..               .+++++++|+  | .|++|+.||+|++||+.+.. .....+.+|..+|++
T Consensus        86 ~~~~~~~~~~~~h~~---------------~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           86 NGRWSQIAVHAVHSA---------------SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             TTEEEEEEEECCCSS---------------CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             CCcccccccccCCCC---------------CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            7641 3445544433               4689999998  7 79999999999999987642 133467799999999


Q ss_pred             EEECC-------------CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccc
Q 047036          469 VDVTY-------------DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKI  534 (634)
Q Consensus       469 VdfSp-------------DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~F  534 (634)
                      |+|+|             ||++|++ +.|++|++||++........+..+.+|.+..                  ..+.|
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V------------------~~l~~  212 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV------------------RDVAW  212 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE------------------EEEEE
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE------------------EEEEe
Confidence            99999             6999999 8999999999863211223444455554210                  12444


Q ss_pred             ccccccccccCCCCceEEE-EEcCCeEEEEeChh
Q 047036          535 HGGHFSWVTENGKQERHLV-ATVGKFSVIWDFQQ  567 (634)
Q Consensus       535 t~a~Fs~~t~~g~~E~~Iv-tStg~~viiWdl~~  567 (634)
                      +|....        ...|+ ++.|+.|.+||+..
T Consensus       213 sp~~~~--------~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          213 SPTVLL--------RSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             CCCCSS--------SEEEEEEESSSCEEEEEESS
T ss_pred             ccCCCC--------CCEEEEEecCCEEEEecCCC
Confidence            444110        13454 47799999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.6e-20  Score=207.02  Aligned_cols=168  Identities=13%  Similarity=0.118  Sum_probs=114.6

Q ss_pred             CcccccCcceeeEEeCCcceEEecCCCCC--C-----------CCCCcEEEEeCCCCcEEEEEe-ccCCCcceeEEEEec
Q 047036          300 KIGSNSTPKKALLMRGETNMMLMSPLKDG--K-----------PQAPGVQQLDIETGKIVTEWK-FEKDGTDITMRDITN  365 (634)
Q Consensus       300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~--~-----------~~~~TIrlWDleTGK~V~~lk-gH~~~V~I~vvsfsP  365 (634)
                      +.+++|+|++.+++.+....-+..+.-..  +           ..+++++.|++.+|+....+. +|.+.|  ..++|||
T Consensus        18 v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V--~~vawSP   95 (588)
T 2j04_A           18 KNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYP--RVCKPSP   95 (588)
T ss_dssp             SCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCE--EEEEECS
T ss_pred             EEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcE--EEEEECC
Confidence            36777888887666543332221000000  0           001345556666665444444 566654  5679999


Q ss_pred             CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcE
Q 047036          366 DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKI  444 (634)
Q Consensus       366 d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtI  444 (634)
                      +        |.+||+++.|++|++||...   ++..+. |..++          ....+.+++|+|+| +||+|+.||+|
T Consensus        96 d--------G~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~----------~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           96 I--------DDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNL----------SSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             S--------SSCEEEEETTSCEEEEETTE---EEEECC-CSSCS----------TTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             C--------CCEEEEEeCCCcEEEEeCCc---eeeecc-CCCcc----------ccccEEEEEEcCCCCEEEEEcCCCEE
Confidence            8        67899999999999999532   455565 54432          12347899999999 79999999999


Q ss_pred             EEEecccccc------ccccc----cCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          445 RLYSKTSMRQ------AKTAF----PGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       445 RLWD~~t~r~------akt~L----~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      ||||+.+++.      ...++    .||.++|.+|+||||| .++++.|++|+|||+.
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~  210 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence            9999887521      12444    7899999999999999 4444999999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.83  E-value=9.5e-19  Score=174.29  Aligned_cols=142  Identities=10%  Similarity=0.148  Sum_probs=114.3

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCc---EEEEEeccCCCcceeEEEEecCCCCCCCCCCC-EEEEEeCCCeEEE
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGK---IVTEWKFEKDGTDITMRDITNDTKSSQLDPSE-STFLGLDDNRLCQ  389 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK---~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~tIkl  389 (634)
                      +.++++|++++.|      ++|++||+.+++   .+..+.+|...|  ..++|+|+        +. .+++|+.|++|++
T Consensus        20 s~~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A           20 IPSKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLRYKHPL--LCCNFIDN--------TDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EGGGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEECSSCE--EEEEEEES--------SSEEEEEEETTSCEEE
T ss_pred             cCCCCEEEEEcCC------CeEEEEEeCCCCccccceeeeecCCce--EEEEECCC--------CCcEEEEEcCCCeEEE
Confidence            3445667777665      799999999988   456677999876  46699998        68 8999999999999


Q ss_pred             EEc-CCCCceEEeccc--CCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccc---------cccccc
Q 047036          390 WDM-RDRSGIVQNMVK--GDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTS---------MRQAKT  457 (634)
Q Consensus       390 WD~-R~~~~~Vq~l~g--h~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t---------~r~akt  457 (634)
                      ||+ ..+.  +..+.+  |..               .+.+++++++.+|++|+.||.|++||+.+         .+ ...
T Consensus        84 wd~~~~~~--~~~~~~~~~~~---------------~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~  145 (342)
T 1yfq_A           84 VDLIGSPS--FQALTNNEANL---------------GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSN  145 (342)
T ss_dssp             ECSSSSSS--EEECBSCCCCS---------------CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSS
T ss_pred             EEeccCCc--eEeccccCCCC---------------ceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-eee
Confidence            999 7653  355654  443               46788998844899999999999999886         53 556


Q ss_pred             cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          458 AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       458 ~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .+. |...|++|+|+|++  |++ +.|+.|++||+.
T Consensus       146 ~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~  178 (342)
T 1yfq_A          146 NTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             SSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESS
T ss_pred             EEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECC
Confidence            676 99999999999998  666 899999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.82  E-value=5.9e-19  Score=182.31  Aligned_cols=198  Identities=14%  Similarity=0.157  Sum_probs=131.9

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEc
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDM  392 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~  392 (634)
                      ++|+++|++++.       ..+++||+++++.+.....+  .+  .++++.++        ++.+ ++|+.|++|++||+
T Consensus        28 s~dg~~la~g~~-------~~~~iw~~~~~~~~~~~~~~--~~--~~~~~~~~--------~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           28 NQDQSCLILSTL-------KSFEIYNVHPVAHIMSQEMR--HL--SKVRMLHR--------TNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             CTTSSEEEEECS-------SEEEEEEETTEEEEEEEECS--CC--CEEEECTT--------SSEEEEECSSTTEEEEEET
T ss_pred             CCCCCEEEEEcC-------CEEEEEecCCcceeeeeecC--Ce--EEEEEcCC--------CCEEEEEECCccEEEEEEC
Confidence            344455666654       35899999999887765544  23  46688887        3444 67888999999999


Q ss_pred             CCCCceEEecccCCCCccc------------------cc--cc----cccccCcceEEEEECCCCeEEE--EECCCcEEE
Q 047036          393 RDRSGIVQNMVKGDSPVLH------------------WT--QG----HQFSRGTNFQCFASTGDGSIVV--GSLDGKIRL  446 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~------------------~~--~g----~~y~~~~~fssva~s~dG~IAS--GS~DGtIRL  446 (634)
                      +++.. +..+. |..+|..                  |.  .+    +.+..  +...+++++ .+||+  |+.||+|+|
T Consensus        89 ~~~~~-~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~-~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           89 VKKQD-VSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR--FGGVCEFSN-GLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             TTTEE-EEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE--EEEEEEEET-TEEEEEESSCTTCEEE
T ss_pred             CCCcE-EEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc--CCceEEEEc-cEEEEeCCCcCcEEEE
Confidence            98643 44543 2222211                  11  00    00001  223345555 55655  689999999


Q ss_pred             Eecccccc---------------ccccccCCCCCeEEEEECCCCCEEEE-EcCCc-EEEEEcccccCCCCeeeeec-C-C
Q 047036          447 YSKTSMRQ---------------AKTAFPGLGSPITHVDVTYDGKWILG-TTDTY-LILICTLFSDKDGKTKTGFS-G-R  507 (634)
Q Consensus       447 WD~~t~r~---------------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t-IrLWD~~~~~~~G~~~~gF~-g-h  507 (634)
                      ||+.+++.               ....+.+|..+|++|+|||||++||+ +.|++ |+|||+.    +|+++..|. | |
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~----~~~~~~~~~~g~h  239 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE----DGVLVREFRRGLD  239 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT----TCCEEEEEECTTC
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC----CCcEEEEEEcCCC
Confidence            99876420               15678999999999999999999999 99999 9999986    688888887 4 5


Q ss_pred             CCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          508 MGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       508 ~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      .+..                  ..+.|+|.        |  ...++++.|+.|.|||+..
T Consensus       240 ~~~v------------------~~~~~s~~--------~--~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          240 RADV------------------VDMKWSTD--------G--SKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             CSCE------------------EEEEECTT--------S--CEEEEEETTCEEEEEESSC
T ss_pred             CCcE------------------EEEEECCC--------C--CEEEEEECCCEEEEEEccC
Confidence            4210                  13455554        3  2344457899999999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=1.1e-17  Score=170.85  Aligned_cols=230  Identities=13%  Similarity=0.126  Sum_probs=155.3

Q ss_pred             cEEEeee-CCCeEE-Ee---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFL-VS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfv-v~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ...++.+ +|+.++ +.   +..|.+|....+.     ....+..+....+.+|+        ++++.|+.++.++    
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~v~~~~~s--------pdg~~l~~~~~~~----   95 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-----VIATVPAGSSPQGVAVS--------PDGKQVYVTNMAS----   95 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-----EEEEEECSSSEEEEEEC--------TTSSEEEEEETTT----
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-----EEEEEECCCCccceEEC--------CCCCEEEEEECCC----
Confidence            4667777 777654 43   3689999865532     12233332222344444        4455554444332    


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                       ++|++||+.+|+++..+..|..   +..++|+|+        ++.+ ++++.|++|++||+++++ ++..+..|     
T Consensus        96 -~~v~v~d~~~~~~~~~~~~~~~---~~~~~~s~d--------g~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-----  157 (391)
T 1l0q_A           96 -STLSVIDTTSNTVAGTVKTGKS---PLGLALSPD--------GKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-----  157 (391)
T ss_dssp             -TEEEEEETTTTEEEEEEECSSS---EEEEEECTT--------SSEEEEEETTTTEEEEEETTTTE-EEEEEECC-----
T ss_pred             -CEEEEEECCCCeEEEEEeCCCC---cceEEECCC--------CCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-----
Confidence             7999999999999999998764   345699998        4555 788999999999998764 34444321     


Q ss_pred             ccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E---cCC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T---TDT  484 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S---~D~  484 (634)
                                 ....+++++++| +| ++++.|+.|++||+.+++ ....++ |...+.+++|+|||++|++ +   .++
T Consensus       158 -----------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~  224 (391)
T 1l0q_A          158 -----------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (391)
T ss_dssp             -----------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             -----------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence                       224788999998 56 678899999999998763 555555 5668999999999999998 5   589


Q ss_pred             cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEE
Q 047036          485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIW  563 (634)
Q Consensus       485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiW  563 (634)
                      .|++||+.    .++.+..+..|..     |              ..+.|+|.        |  ...+++ +.++.|.+|
T Consensus       225 ~v~~~d~~----~~~~~~~~~~~~~-----~--------------~~~~~s~d--------g--~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          225 TVSMIDTG----TNKITARIPVGPD-----P--------------AGIAVTPD--------G--KKVYVALSFXNTVSVI  271 (391)
T ss_dssp             EEEEEETT----TTEEEEEEECCSS-----E--------------EEEEECTT--------S--SEEEEEETTTTEEEEE
T ss_pred             cEEEEECC----CCeEEEEEecCCC-----c--------------cEEEEccC--------C--CEEEEEcCCCCEEEEE
Confidence            99999975    4554444433221     0              12333333        2  234355 568999999


Q ss_pred             eChh
Q 047036          564 DFQQ  567 (634)
Q Consensus       564 dl~~  567 (634)
                      |+..
T Consensus       272 d~~~  275 (391)
T 1l0q_A          272 DTAT  275 (391)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9873

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=1.2e-16  Score=163.28  Aligned_cols=200  Identities=13%  Similarity=0.121  Sum_probs=141.2

Q ss_pred             cEEEeee-CCCeEE-Eec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceE-EecCCCCCCC
Q 047036          257 QSLTLGA-LDNSFL-VSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMM-LMSPLKDGKP  330 (634)
Q Consensus       257 ~~LavG~-~D~sfv-v~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~ml-lsss~d~~~~  330 (634)
                      ....+++ +|+.++ +.+   ..|.||....+.     ....+..+....+.+|        +.+++.| ++++.+    
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~~~~~~~~~~~--------s~dg~~l~~~~~~~----  137 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-----VAGTVKTGKSPLGLAL--------SPDGKKLYVTNNGD----  137 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEECSSSEEEEEE--------CTTSSEEEEEETTT----
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCe-----EEEEEeCCCCcceEEE--------CCCCCEEEEEeCCC----
Confidence            4556666 666644 333   578888865532     1222333222233344        4445545 454443    


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                        ++|++||+.+|+++..+..|..   +..++|+|+        +..+ ++++.|++|++||++++. ++..+. |    
T Consensus       138 --~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~d--------g~~l~~~~~~~~~v~~~d~~~~~-~~~~~~-~----  198 (391)
T 1l0q_A          138 --KTVSVINTVTKAVINTVSVGRS---PKGIAVTPD--------GTKVYVANFDSMSISVIDTVTNS-VIDTVK-V----  198 (391)
T ss_dssp             --TEEEEEETTTTEEEEEEECCSS---EEEEEECTT--------SSEEEEEETTTTEEEEEETTTTE-EEEEEE-C----
T ss_pred             --CEEEEEECCCCcEEEEEecCCC---cceEEECCC--------CCEEEEEeCCCCEEEEEECCCCe-EEEEEe-c----
Confidence              6999999999999999998865   245699998        4555 788899999999999864 344442 1    


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEE---CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGS---LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTD  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS---~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D  483 (634)
                                 ...+.+++++++| +|++++   .++.|++||+.+++ ....++.|. .+.+++|+|||++|+ + +.|
T Consensus       199 -----------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          199 -----------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             -----------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTT
T ss_pred             -----------CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCC
Confidence                       1235788999998 788887   79999999998764 666777665 579999999999984 5 569


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCCC
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRMG  509 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~~  509 (634)
                      ++|++||+.    .|+.+..+..|..
T Consensus       266 ~~v~v~d~~----~~~~~~~~~~~~~  287 (391)
T 1l0q_A          266 NTVSVIDTA----TNTITATMAVGKN  287 (391)
T ss_dssp             TEEEEEETT----TTEEEEEEECSSS
T ss_pred             CEEEEEECC----CCcEEEEEECCcC
Confidence            999999986    6787777776653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.77  E-value=1.8e-16  Score=164.10  Aligned_cols=230  Identities=13%  Similarity=0.119  Sum_probs=153.5

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      ..++.+ +++.+++.+   ..|.+|......     ....+..|.       .+...+.++++++.|+.++..+     +
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~-----~  234 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLA-----YKATVDLTG-------KWSKILLYDPIRDLVYCSNWIS-----E  234 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-----EEEEEECSS-------SSEEEEEEETTTTEEEEEETTT-----T
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCce-----EEEEEcCCC-------CCeeEEEEcCCCCEEEEEecCC-----C
Confidence            445555 677776654   578888865432     222333321       1122334455556564444322     6


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe--------CCCeEEEEEcCCCCceEEecccC
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL--------DDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS--------~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                      +|++||+.+|+++..+..|..   +..++|+|+        +..+++++        .|++|++||++++. ++..+. |
T Consensus       235 ~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~--------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~-~  301 (433)
T 3bws_A          235 DISVIDRKTKLEIRKTDKIGL---PRGLLLSKD--------GKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTIG-P  301 (433)
T ss_dssp             EEEEEETTTTEEEEECCCCSE---EEEEEECTT--------SSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEEE-E
T ss_pred             cEEEEECCCCcEEEEecCCCC---ceEEEEcCC--------CCEEEEEECCCCccccCCCeEEEEECCCCc-EEeecc-C
Confidence            999999999999999988764   355699998        56888888        58999999999754 333331 1


Q ss_pred             CCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~  482 (634)
                                     .....+++++|+| + +++++.|+.|++||+.+++ ....++ |...+.+|+|+|||++|++ +.
T Consensus       302 ---------------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          302 ---------------PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-VQKSIP-VFDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             ---------------EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEEC
T ss_pred             ---------------CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-EEEEec-CCCCCCeEEEcCCCCEEEEEec
Confidence                           1135678999998 4 4677999999999998764 555665 7788999999999999988 54


Q ss_pred             ---------------CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCC
Q 047036          483 ---------------DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGK  547 (634)
Q Consensus       483 ---------------D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~  547 (634)
                                     |+.|++||+.    +++.+..+.++..     |              ..+.|+|+        | 
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~----~~~~~~~~~~~~~-----~--------------~~~~~s~d--------g-  412 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTT----TDTVKEFWEAGNQ-----P--------------TGLDVSPD--------N-  412 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETT----TTEEEEEEECSSS-----E--------------EEEEECTT--------S-
T ss_pred             CCCccccccccccccceEEEEEECC----CCcEEEEecCCCC-----C--------------ceEEEcCC--------C-
Confidence                           4599999975    5665555543210     1              12344443        3 


Q ss_pred             CceEEEEEc-CCeEEEEeChh
Q 047036          548 QERHLVATV-GKFSVIWDFQQ  567 (634)
Q Consensus       548 ~E~~IvtSt-g~~viiWdl~~  567 (634)
                       ...++++. ++.|.+|++..
T Consensus       413 -~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          413 -RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -CEEEEEETTTTEEEEEEETT
T ss_pred             -CEEEEEECCCCeEEEEEecC
Confidence             23445554 89999999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.76  E-value=1.7e-16  Score=164.38  Aligned_cols=199  Identities=8%  Similarity=0.027  Sum_probs=135.5

Q ss_pred             Eeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          260 TLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       260 avG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      ++.+ +++.+++.+   ..|.+|....+.+........+.+|       ..+...+.+..+++++++++.+      ++|
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~s~~~d------~~v  193 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKK-------LGFVETISIPEHNELWVSQMQA------NAV  193 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTT-------CCEEEEEEEGGGTEEEEEEGGG------TEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccccc-------CCceeEEEEcCCCEEEEEECCC------CEE
Confidence            4555 566666654   4688888654331100000001122       1223334445556667777654      699


Q ss_pred             EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036          336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ  414 (634)
Q Consensus       336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~  414 (634)
                      ++||+.+++++.++.+|...+  ..++|+|+        +..+ ++++.|++|++||++++. .+..+..          
T Consensus       194 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~----------  252 (433)
T 3bws_A          194 HVFDLKTLAYKATVDLTGKWS--KILLYDPI--------RDLVYCSNWISEDISVIDRKTKL-EIRKTDK----------  252 (433)
T ss_dssp             EEEETTTCCEEEEEECSSSSE--EEEEEETT--------TTEEEEEETTTTEEEEEETTTTE-EEEECCC----------
T ss_pred             EEEECCCceEEEEEcCCCCCe--eEEEEcCC--------CCEEEEEecCCCcEEEEECCCCc-EEEEecC----------
Confidence            999999999999999998875  45699998        4566 566689999999999764 3455432          


Q ss_pred             ccccccCcceEEEEECCCC-eEEEEE--------CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcC
Q 047036          415 GHQFSRGTNFQCFASTGDG-SIVVGS--------LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTD  483 (634)
Q Consensus       415 g~~y~~~~~fssva~s~dG-~IASGS--------~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D  483 (634)
                            ...+.+++++|+| +|++++        .||.|++||+.+++ ....+ +|...+.+++|+|||++|+.  +.|
T Consensus       253 ------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~  324 (433)
T 3bws_A          253 ------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTI-GPPGNKRHIVSGNTENKIYVSDMCC  324 (433)
T ss_dssp             ------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEE-EEEECEEEEEECSSTTEEEEEETTT
T ss_pred             ------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEeec-cCCCCcceEEECCCCCEEEEEecCC
Confidence                  1236788999999 788888        58999999988753 43433 56678999999999987754  579


Q ss_pred             CcEEEEEcccccCCCCeeeee
Q 047036          484 TYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      ++|++||+.    .++.+..+
T Consensus       325 ~~v~v~d~~----~~~~~~~~  341 (433)
T 3bws_A          325 SKIEVYDLK----EKKVQKSI  341 (433)
T ss_dssp             TEEEEEETT----TTEEEEEE
T ss_pred             CEEEEEECC----CCcEEEEe
Confidence            999999975    45554444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.68  E-value=1.2e-14  Score=154.08  Aligned_cols=151  Identities=11%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE-
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF-  379 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-  379 (634)
                      .+.+|+|++        ++|+.++.+.   ...+|++||+.+|++. .+.+|...+  ..++|+||        |+.|+ 
T Consensus       182 ~~~~~Spdg--------~~la~~s~~~---~~~~i~~~d~~tg~~~-~l~~~~~~~--~~~~~spd--------g~~la~  239 (415)
T 2hqs_A          182 MSPAWSPDG--------SKLAYVTFES---GRSALVIQTLANGAVR-QVASFPRHN--GAPAFSPD--------GSKLAF  239 (415)
T ss_dssp             EEEEECTTS--------SEEEEEECTT---SSCEEEEEETTTCCEE-EEECCSSCE--EEEEECTT--------SSEEEE
T ss_pred             eeeEEcCCC--------CEEEEEEecC---CCcEEEEEECCCCcEE-EeecCCCcc--cCEEEcCC--------CCEEEE
Confidence            445566654        4455555432   1258999999999985 577787765  45699999        55566 


Q ss_pred             EEeCCCe--EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccc
Q 047036          380 LGLDDNR--LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMR  453 (634)
Q Consensus       380 SGS~D~t--IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r  453 (634)
                      +++.|+.  |++||++++..  ..+..|.               ..+.+++++|+| +||+++. +|  .|.+||+.+++
T Consensus       240 ~~~~~g~~~i~~~d~~~~~~--~~l~~~~---------------~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASGQI--RQVTDGR---------------SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCE--EECCCCS---------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEecCCCceEEEEECCCCCE--EeCcCCC---------------CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            7776654  99999987642  4554332               235788999999 6888886 45  67777987753


Q ss_pred             cccccccCCCCCeEEEEECCCCCEEEE-EcC---CcEEEEEcc
Q 047036          454 QAKTAFPGLGSPITHVDVTYDGKWILG-TTD---TYLILICTL  492 (634)
Q Consensus       454 ~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D---~tIrLWD~~  492 (634)
                        ...+..|+..+.+++|||||++|++ +.+   ..|.+||+.
T Consensus       303 --~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          303 --PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             --CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             --EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence              3456678889999999999999998 554   589999975

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.66  E-value=3.2e-16  Score=168.30  Aligned_cols=122  Identities=13%  Similarity=0.000  Sum_probs=93.7

Q ss_pred             eeEEEEecCCCCCCCCCCCEEE----EEeCCCeEEEEEcCCC-----Cc--e---EEecccCCCCccccccccccccCcc
Q 047036          358 ITMRDITNDTKSSQLDPSESTF----LGLDDNRLCQWDMRDR-----SG--I---VQNMVKGDSPVLHWTQGHQFSRGTN  423 (634)
Q Consensus       358 I~vvsfsPd~K~~q~~~g~~la----SGS~D~tIklWD~R~~-----~~--~---Vq~l~gh~s~V~~~~~g~~y~~~~~  423 (634)
                      |..++|+|+        +.+|+    +|+.|++|++||+++.     +.  .   +..+.+|               ...
T Consensus        95 v~~l~~spd--------g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h---------------~~~  151 (434)
T 2oit_A           95 IHHLALSCD--------NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA---------------GGM  151 (434)
T ss_dssp             EEEEEECTT--------SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG---------------GGS
T ss_pred             ccEEEEcCC--------CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC---------------CCc
Confidence            356799998        67888    8999999999998753     11  1   2233323               235


Q ss_pred             eEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCe
Q 047036          424 FQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKT  500 (634)
Q Consensus       424 fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~  500 (634)
                      +.+++++|+ + .||+|+.||+|||||+.++. ......+|...|++|+|||||++|++ +.|++|++||++     |+.
T Consensus       152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-----~~~  225 (434)
T 2oit_A          152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-----LQE  225 (434)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-----CCE
T ss_pred             eEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-----Ccc
Confidence            789999997 5 79999999999999988753 44455679999999999999999999 899999999964     444


Q ss_pred             eeeecCCC
Q 047036          501 KTGFSGRM  508 (634)
Q Consensus       501 ~~gF~gh~  508 (634)
                      +..+..|.
T Consensus       226 ~~~~~~~~  233 (434)
T 2oit_A          226 KKVIPCPP  233 (434)
T ss_dssp             EEEECCCT
T ss_pred             cccccCCc
Confidence            55555443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.65  E-value=3.8e-14  Score=156.91  Aligned_cols=166  Identities=12%  Similarity=0.128  Sum_probs=119.1

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeC--CCCcEEEEEeccCCCcceeEEEEec----CCCCCCCCCCCEEEEEe-CCC
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDI--ETGKIVTEWKFEKDGTDITMRDITN----DTKSSQLDPSESTFLGL-DDN  385 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDl--eTGK~V~~lkgH~~~V~I~vvsfsP----d~K~~q~~~g~~laSGS-~D~  385 (634)
                      +++|++.|++++.+      ++|++||+  .+++++.++..+.. +  .-++|+|    |        |+.+++++ .++
T Consensus       186 ~spdg~~l~v~~~d------~~V~v~D~~~~t~~~~~~i~~g~~-p--~~va~sp~~~~d--------g~~l~v~~~~~~  248 (543)
T 1nir_A          186 MSASGRYLLVIGRD------ARIDMIDLWAKEPTKVAEIKIGIE-A--RSVESSKFKGYE--------DRYTIAGAYWPP  248 (543)
T ss_dssp             ECTTSCEEEEEETT------SEEEEEETTSSSCEEEEEEECCSE-E--EEEEECCSTTCT--------TTEEEEEEEESS
T ss_pred             ECCCCCEEEEECCC------CeEEEEECcCCCCcEEEEEecCCC-c--ceEEeCCCcCCC--------CCEEEEEEccCC
Confidence            34455566666554      68999999  99999999996554 2  4569999    8        67888887 589


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccc-ccccCC
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAK-TAFPGL  462 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~ak-t~L~GH  462 (634)
                      +|.+||..+.+ +++.+..+...+    .+..|.....+.++++++++  .+++.+.+|+|.+||..+.+..+ +++ .+
T Consensus       249 ~v~v~D~~t~~-~~~~i~~~g~~~----~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~  322 (543)
T 1nir_A          249 QFAIMDGETLE-PKQIVSTRGMTV----DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GA  322 (543)
T ss_dssp             EEEEEETTTCC-EEEEEECCEECS----SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-EC
T ss_pred             eEEEEeccccc-cceeecccCccc----CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-cc
Confidence            99999998865 456664221110    01112223356788999876  57888999999999987654222 234 47


Q ss_pred             CCCeEEEEECCCCCEEEE-E-cCCcEEEEEcccccCCCCeeeeec
Q 047036          463 GSPITHVDVTYDGKWILG-T-TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +..+.++.|+|||++|++ + .+++|.+||+.    +|+++..+.
T Consensus       323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~  363 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSK----DRRLSALVD  363 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEGGGTEEEEEETT----TTEEEEEEE
T ss_pred             CcCccCceECCCCCEEEEEecCCCeEEEEECC----CCeEEEeec
Confidence            788999999999999876 4 48999999986    677666554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.65  E-value=1.9e-15  Score=162.31  Aligned_cols=151  Identities=12%  Similarity=0.070  Sum_probs=111.2

Q ss_pred             eeeEEeCCcceEE----ecCCCCCCCCCCcEEEEeCCCC--------c---EEEEEeccCCCcceeEEEEecCCCCCCCC
Q 047036          309 KALLMRGETNMML----MSPLKDGKPQAPGVQQLDIETG--------K---IVTEWKFEKDGTDITMRDITNDTKSSQLD  373 (634)
Q Consensus       309 ~~mL~~~D~~mll----sss~d~~~~~~~TIrlWDleTG--------K---~V~~lkgH~~~V~I~vvsfsPd~K~~q~~  373 (634)
                      ..+.++.++++|+    +++.|      ++|++||+.++        +   .++.+.+|...|  ..++|+|+.      
T Consensus        96 ~~l~~spdg~~lav~~~sgs~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~v~~~p~~------  161 (434)
T 2oit_A           96 HHLALSCDNLTLSACMMSSEYG------SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV--IDMKWNPTV------  161 (434)
T ss_dssp             EEEEECTTSCEEEEEEEETTTE------EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE--EEEEECSSC------
T ss_pred             cEEEEcCCCCEEEEEEeccCCC------ceEEEEEccccccCCcCCcceeeeeeccCCCCCce--EEEEECCCC------
Confidence            3444555566666    45544      79999999876        2   256788899876  466999972      


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc
Q 047036          374 PSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       374 ~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~  452 (634)
                       +.++++|+.|++|++||++++.. +....+|               ...++|++++|+| +||+|+.||+|++||..+ 
T Consensus       162 -~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~---------------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-  223 (434)
T 2oit_A          162 -PSMVAVCLADGSIAVLQVTETVK-VCATLPS---------------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-  223 (434)
T ss_dssp             -TTEEEEEETTSCEEEEEESSSEE-EEEEECG---------------GGCEEEEEECTTSSCEEEEETTSCEEEECTTC-
T ss_pred             -CCEEEEEECCCeEEEEEcCCCcc-eeeccCC---------------CCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-
Confidence             46899999999999999998643 2233222               2357899999999 899999999999999872 


Q ss_pred             ccccccccC-------CCCCeEEEEECCCCCEEEE--EcCC------cEEEEEcc
Q 047036          453 RQAKTAFPG-------LGSPITHVDVTYDGKWILG--TTDT------YLILICTL  492 (634)
Q Consensus       453 r~akt~L~G-------H~d~ItsVdfSpDGk~LlS--S~D~------tIrLWD~~  492 (634)
                      . .+..++.       |...|.+|+|++++.+|++  +.|+      .+++|++.
T Consensus       224 ~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          224 Q-EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             C-EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             c-ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            2 3333333       3348999999999999987  3342      38999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.3e-14  Score=137.49  Aligned_cols=146  Identities=14%  Similarity=0.057  Sum_probs=101.4

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe--CCCeEEEEE
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL--DDNRLCQWD  391 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS--~D~tIklWD  391 (634)
                      +++++|++++.       +.|++||+.+ |+....+.+|.... +..++|+|+        +..+++++  .++.+++|.
T Consensus        51 pdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~spd--------g~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           51 PDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDTGFATIC-NNDHGISPD--------GALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             TTSSEEEEEET-------TEEEEEESSSCCSCEECCCTTCCCB-CSCCEECTT--------SSEEEEEECTTTSSCEEEE
T ss_pred             CCCCEEEEEcC-------CeEEEEeCCCCCCceEecccccccc-ccceEECCC--------CCEEEEEEeCCCCcceEEE
Confidence            34445555542       5899999999 99888887774321 245699999        67899888  334555555


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEE-EEECCCcEEEEeccccccccccccCCCCCeEEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsV  469 (634)
                      .......++.+..                .....+++++|+| +|+ +++.|+.++||++.........+..|...|.++
T Consensus       115 ~~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  178 (297)
T 2ojh_A          115 LPSTGGTPRLMTK----------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGP  178 (297)
T ss_dssp             EETTCCCCEECCS----------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEE
T ss_pred             EECCCCceEEeec----------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccc
Confidence            4322222233321                1125678899999 566 788999999999532112345677788999999


Q ss_pred             EECCCCCEEEE-E-cCCcEEEEEcc
Q 047036          470 DVTYDGKWILG-T-TDTYLILICTL  492 (634)
Q Consensus       470 dfSpDGk~LlS-S-~D~tIrLWD~~  492 (634)
                      +|+|||++|+. + .++.++||++.
T Consensus       179 ~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          179 DYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eECCCCCEEEEEecCCCCccEEEEC
Confidence            99999999987 5 48999999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.62  E-value=3.1e-13  Score=134.73  Aligned_cols=195  Identities=12%  Similarity=0.075  Sum_probs=122.4

Q ss_pred             Eeee-CCCeEEE-e---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          260 TLGA-LDNSFLV-S---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       260 avG~-~D~sfvv-~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      .+++ +|+.+++ .   +.+|.+|....+.+.    ...+..+.       .|...+.+++++++|+++..+.   +..+
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~---~~~~  109 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VVAIQEGQ-------SSMADVDITPDDQFAVTVTGLN---HPFN  109 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EEEEEECS-------SCCCCEEECTTSSEEEECCCSS---SSCE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EEecccCC-------CCccceEECCCCCEEEEecCCC---Cccc
Confidence            6666 7776333 2   247888876544320    11222221       2222233344455555433321   1128


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe-EEEEEcCCCCceEEecccCCCCccccc
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR-LCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t-IklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      |++||+.+|++++.+..+...   ..++|+|+++       .+++++..+++ |.+||+...+.++. ...         
T Consensus       110 i~v~d~~~~~~~~~~~~~~~~---~~~~~spdg~-------~l~~~~~~~~~~i~~~~~~~~g~~~~-~~~---------  169 (331)
T 3u4y_A          110 MQSYSFLKNKFISTIPIPYDA---VGIAISPNGN-------GLILIDRSSANTVRRFKIDADGVLFD-TGQ---------  169 (331)
T ss_dssp             EEEEETTTTEEEEEEECCTTE---EEEEECTTSS-------CEEEEEETTTTEEEEEEECTTCCEEE-EEE---------
T ss_pred             EEEEECCCCCeEEEEECCCCc---cceEECCCCC-------EEEEEecCCCceEEEEEECCCCcEee-cCC---------
Confidence            999999999999998876652   4569999932       25566677788 99999986544321 100         


Q ss_pred             cccccccCcceEEEEECCCC-eEEE-EECCCcEEEEeccccccc---cccccCCCCCeEEEEECCCCCEEEE--EcCCcE
Q 047036          414 QGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKTSMRQA---KTAFPGLGSPITHVDVTYDGKWILG--TTDTYL  486 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~t~r~a---kt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tI  486 (634)
                        ..........+++++|+| +|++ +..++.|++||+.+++ .   ...++. +..+.+++|||||++|+.  ..++.|
T Consensus       170 --~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i  245 (331)
T 3u4y_A          170 --EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE-NITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDV  245 (331)
T ss_dssp             --EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT-SCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEE
T ss_pred             --ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-ccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEE
Confidence              000112235788999999 4654 5578999999998764 4   455664 466789999999998876  347889


Q ss_pred             EEEEcc
Q 047036          487 ILICTL  492 (634)
Q Consensus       487 rLWD~~  492 (634)
                      .+||+.
T Consensus       246 ~~~d~~  251 (331)
T 3u4y_A          246 FNFNQL  251 (331)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.62  E-value=9.9e-14  Score=147.10  Aligned_cols=209  Identities=14%  Similarity=0.114  Sum_probs=139.9

Q ss_pred             cEEEeee-CCCeEEEec------CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEE-ecCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD------LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMML-MSPLKD  327 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G------~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mll-sss~d~  327 (634)
                      ...++.+ +|+.+++.+      ..|.+|....+.      ...+..+. ...+.+|+|++        +.|+ +++.+.
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------~~~l~~~~~~~~~~~~spdg--------~~la~~~~~~g  245 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------VRQVASFPRHNGAPAFSPDG--------SKLAFALSKTG  245 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------EEEEECCSSCEEEEEECTTS--------SEEEEEECTTS
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc------EEEeecCCCcccCEEEcCCC--------CEEEEEEecCC
Confidence            4667777 788777643      278888765432      22333331 12344555554        4444 333321


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-C--eEEEEEcCCCCceEEeccc
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-N--RLCQWDMRDRSGIVQNMVK  404 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~--tIklWD~R~~~~~Vq~l~g  404 (634)
                          ...|++||+.+|++ ..+.+|...+  ..++|+||        |+.|++++.+ +  .|++||+.++..  ..+..
T Consensus       246 ----~~~i~~~d~~~~~~-~~l~~~~~~~--~~~~~spd--------g~~l~~~s~~~g~~~i~~~d~~~~~~--~~l~~  308 (415)
T 2hqs_A          246 ----SLNLYVMDLASGQI-RQVTDGRSNN--TEPTWFPD--------SQNLAFTSDQAGRPQVYKVNINGGAP--QRITW  308 (415)
T ss_dssp             ----SCEEEEEETTTCCE-EECCCCSSCE--EEEEECTT--------SSEEEEEECTTSSCEEEEEETTSSCC--EECCC
T ss_pred             ----CceEEEEECCCCCE-EeCcCCCCcc--cceEECCC--------CCEEEEEECCCCCcEEEEEECCCCCE--EEEec
Confidence                25699999999987 6788888765  45699999        6778887764 4  788889887542  33322


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                      |.               ..+.+++++|+| +||+++.+   +.|++||+.+++ . ..|..|. .+.+++|||||++|++
T Consensus       309 ~~---------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~l~~~~-~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          309 EG---------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTF-LDETPSLAPNGTMVIY  370 (415)
T ss_dssp             SS---------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSS-SCEEEEECTTSSEEEE
T ss_pred             CC---------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC-E-EEecCCC-CcCCeEEcCCCCEEEE
Confidence            21               235678999999 78888764   689999998763 3 4566665 8999999999999998


Q ss_pred             -EcCC---cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCC
Q 047036          481 -TTDT---YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPL  523 (634)
Q Consensus       481 -S~D~---tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe  523 (634)
                       +.++   .|.+||+     +|+.+..+.+|.+.    -+.+...|+
T Consensus       371 ~s~~~~~~~l~~~d~-----~g~~~~~l~~~~~~----v~~~~~~~~  408 (415)
T 2hqs_A          371 SSSQGMGSVLNLVST-----DGRFKARLPATDGQ----VKFPAWSPY  408 (415)
T ss_dssp             EEEETTEEEEEEEET-----TSCCEEECCCSSSE----EEEEEECCC
T ss_pred             EEcCCCccEEEEEEC-----CCCcEEEeeCCCCC----CcCCccccc
Confidence             6666   7999996     46666667766542    244555554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.60  E-value=4.8e-13  Score=133.65  Aligned_cols=175  Identities=8%  Similarity=0.089  Sum_probs=121.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCc-------ceeEEEEecCCCCCCCCCCCEEEEEe--CCCeEEEEEcCCCCceEEecc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGT-------DITMRDITNDTKSSQLDPSESTFLGL--DDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V-------~I~vvsfsPd~K~~q~~~g~~laSGS--~D~tIklWD~R~~~~~Vq~l~  403 (634)
                      ++|++||+.+|+++..+..+...-       .+..++|+|+        +..++++.  .+++|.+||++++. .+..+.
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--------g~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~  181 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA--------TNTVYISGIGKESVIWVVDGGNIK-LKTAIQ  181 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT--------TTEEEEEEESSSCEEEEEETTTTE-EEEEEC
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC--------CCEEEEEecCCCceEEEEcCCCCc-eEEEec
Confidence            689999999999999998765321       0134599998        56666665  58999999998754 345543


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc----CCCCCeEEEEECCCCCEE
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP----GLGSPITHVDVTYDGKWI  478 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~----GH~d~ItsVdfSpDGk~L  478 (634)
                      .+.               ....+++++++| +|++++.++.|.+||..+++ ....++    ++...+.+|+|+|||++|
T Consensus       182 ~~~---------------~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          182 NTG---------------KMSTGLALDSEGKRLYTTNADGELITIDTADNK-ILSRKKLLDDGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             CCC---------------TTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred             CCC---------------CccceEEECCCCCEEEEEcCCCeEEEEECCCCe-EEEEEEcCCCCCCcccceEEECCCCCEE
Confidence            111               113456788988 79999999999999998764 444443    356678999999999988


Q ss_pred             EE-Ec-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE-
Q 047036          479 LG-TT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT-  555 (634)
Q Consensus       479 lS-S~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS-  555 (634)
                      +. +. ++.|.+||+.    +|+.+..+....                    ...+.|+|+        |  ...++++ 
T Consensus       246 ~~~~~~~~~v~~~d~~----~~~~~~~~~~~~--------------------~~~~~~s~d--------g--~~l~v~~~  291 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTR----NGNILAKVAAPE--------------------SLAVLFNPA--------R--NEAYVTHR  291 (353)
T ss_dssp             EEEESSSSEEEEEETT----TCCEEEEEECSS--------------------CCCEEEETT--------T--TEEEEEET
T ss_pred             EEEeCCCCEEEEEECC----CCcEEEEEEcCC--------------------CceEEECCC--------C--CEEEEEEC
Confidence            76 43 5899999975    455443333110                    012444444        3  2455565 


Q ss_pred             cCCeEEEEeCh
Q 047036          556 VGKFSVIWDFQ  566 (634)
Q Consensus       556 tg~~viiWdl~  566 (634)
                      .++.|.+||+.
T Consensus       292 ~~~~v~~~d~~  302 (353)
T 3vgz_A          292 QAGKVSVIDAK  302 (353)
T ss_dssp             TTTEEEEEETT
T ss_pred             CCCeEEEEECC
Confidence            58999999986

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.59  E-value=4.1e-13  Score=132.55  Aligned_cols=171  Identities=9%  Similarity=0.026  Sum_probs=112.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccC-----CCcceeEEEEecCCCCCCCCCCCEEEEEe------------CCCeEEEEEcCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEK-----DGTDITMRDITNDTKSSQLDPSESTFLGL------------DDNRLCQWDMRDR  395 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~-----~~V~I~vvsfsPd~K~~q~~~g~~laSGS------------~D~tIklWD~R~~  395 (634)
                      ++|++||+.+|+++.++....     ..+  ..++|+|+        ++.+++++            .++.|.+||+.++
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~d--------g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  125 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSL--FGAALSPD--------GKTLAIYESPVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECT--TCEEECTT--------SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccc--cceEECCC--------CCEEEEEecccccccccccccCceEEEEECCCC
Confidence            689999999999999887432     122  24599998        56788876            6899999999875


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--------------
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--------------  460 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--------------  460 (634)
                      . .+..+..                .....+++++|+| +|+++  ++.|++||+.+++ ....++              
T Consensus       126 ~-~~~~~~~----------------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg  185 (337)
T 1pby_B          126 S-RRKAFEA----------------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             E-EEEEEEC----------------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTTTTTTBCCCBC
T ss_pred             c-EEEEEeC----------------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-EeeeeeccccCCCceeCCCc
Confidence            4 3444421                1123466789998 58777  6899999987653 222222              


Q ss_pred             ----------------------------------------------------CCCCCeEEEEECCCCCEEEEEcCCcEEE
Q 047036          461 ----------------------------------------------------GLGSPITHVDVTYDGKWILGTTDTYLIL  488 (634)
Q Consensus       461 ----------------------------------------------------GH~d~ItsVdfSpDGk~LlSS~D~tIrL  488 (634)
                                                                          .|...+.+|+|||||++|+++ +++|.+
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~  264 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLES  264 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEE
Confidence                                                                122345679999999998887 789999


Q ss_pred             EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      ||+.    .++.+..+..+.               .    ...+.|+|+        |  ...++++.++.|.+||++.
T Consensus       265 ~d~~----~~~~~~~~~~~~---------------~----~~~~~~s~d--------g--~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          265 FDLE----KNASIKRVPLPH---------------S----YYSVNVSTD--------G--STVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EETT----TTEEEEEEECSS---------------C----CCEEEECTT--------S--CEEEEESBSSEEEEEETTT
T ss_pred             EECC----CCcCcceecCCC---------------c----eeeEEECCC--------C--CEEEEEcCCCcEEEEECcC
Confidence            9974    444433332110               0    012344443        3  2455566788999999873

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.56  E-value=1.6e-12  Score=128.70  Aligned_cols=150  Identities=11%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeC---CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDI---ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLC  388 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDl---eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIk  388 (634)
                      ++++++.|+.+...+     ++|++||+   .+++.+..+.++.. +  ..++|+|+        ++.+++++ .+++|+
T Consensus        91 ~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~-~--~~~~~s~d--------g~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           91 TDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVEGLDG-C--HSANISPD--------NRTLWVPALKQDRIC  154 (343)
T ss_dssp             ECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEECCCTT-B--CCCEECTT--------SSEEEEEEGGGTEEE
T ss_pred             EcCCCCEEEEEecCC-----CeEEEEECCCCccccccccccCCCC-c--eEEEECCC--------CCEEEEecCCCCEEE
Confidence            344455454444322     68999999   66677888877764 2  34599998        56677776 899999


Q ss_pred             EEEcCCCCceEE----ecccCCCCccccccccccccCcceEEEEECCCC-eEEEE-ECCCcEEEEeccc--cc----ccc
Q 047036          389 QWDMRDRSGIVQ----NMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG-SLDGKIRLYSKTS--MR----QAK  456 (634)
Q Consensus       389 lWD~R~~~~~Vq----~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG-S~DGtIRLWD~~t--~r----~ak  456 (634)
                      +||++..+.+..    .+..              .......+++++|+| +|+++ +.++.|++||+..  ++    ...
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTT--------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEEC--------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             EEEecCCCceeeeccccccc--------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            999987333211    1110              012235678999999 56555 4899999999843  21    011


Q ss_pred             cccc-CC--CCCeEEEEECCCCCEEEE-E-cCCcEEEEEcc
Q 047036          457 TAFP-GL--GSPITHVDVTYDGKWILG-T-TDTYLILICTL  492 (634)
Q Consensus       457 t~L~-GH--~d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~  492 (634)
                      ..++ +|  ...+.+|+|+|||++|+. . .++.|++||+.
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            1233 22  346779999999999985 3 68999999975

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=1.8e-12  Score=124.21  Aligned_cols=193  Identities=12%  Similarity=0.026  Sum_probs=123.7

Q ss_pred             cEEEeee-CCCeEEEec--CeeeEEEccC-CceecceeEEEecCC--CCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD--LGLQVYRNYN-RGIHNKGVSVRFDGG--SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G--~~igV~k~~~-~gl~~~~~~~~~~~~--~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      ...++.+ +|+.+++.+  .+|.+|.... ...     ...+..+  .......|+|++        ++|+.+..+.  .
T Consensus        43 ~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg--------~~l~~~~~~~--~  107 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSP-----EKVDTGFATICNNDHGISPDG--------ALYAISDKVE--F  107 (297)
T ss_dssp             CCEEEEECTTSSEEEEEETTEEEEEESSSCCSC-----EECCCTTCCCBCSCCEECTTS--------SEEEEEECTT--T
T ss_pred             ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCc-----eEeccccccccccceEECCCC--------CEEEEEEeCC--C
Confidence            3455666 777766643  5777777544 321     1111121  112344555544        4555554221  1


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ....|++||+.+++ ++.+..+.. +  ..++|+|+        +..++ +++.|+++++|+++.....+..+..|    
T Consensus       108 ~~~~l~~~~~~~~~-~~~~~~~~~-~--~~~~~spd--------g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~----  171 (297)
T 2ojh_A          108 GKSAIYLLPSTGGT-PRLMTKNLP-S--YWHGWSPD--------GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG----  171 (297)
T ss_dssp             SSCEEEEEETTCCC-CEECCSSSS-E--EEEEECTT--------SSEEEEEEEETTEEEEEEEETTTCCEEECCCS----
T ss_pred             CcceEEEEECCCCc-eEEeecCCC-c--cceEECCC--------CCEEEEEECCCCceEEEEEECCCCcceEcccC----
Confidence            12567777777776 556666554 3  45699999        45555 88899999999975433223444322    


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEecc-ccccccccccCCCCCeEEEEECCCCCEEEE-EcC--
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKT-SMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD--  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~-t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D--  483 (634)
                                 ...+.+++++|+| +|++++ .++.++||++. .. .....+..|...|.+++|||||++|+. +.+  
T Consensus       172 -----------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          172 -----------EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             -----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred             -----------CCccccceECCCCCEEEEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence                       2245788999999 577665 59999999975 22 245677888889999999999999988 655  


Q ss_pred             ---------CcEEEEEcc
Q 047036          484 ---------TYLILICTL  492 (634)
Q Consensus       484 ---------~tIrLWD~~  492 (634)
                               ..|.+||+.
T Consensus       240 ~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             CCSCCSSEEEEEEEEETT
T ss_pred             CCcccccCceEEEEEecC
Confidence                     569999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.55  E-value=8.1e-13  Score=131.44  Aligned_cols=172  Identities=13%  Similarity=0.032  Sum_probs=113.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCC------CcceeEEEEecCCCCCCCCCCCEEEEEeCC------------CeEEEEEcCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKD------GTDITMRDITNDTKSSQLDPSESTFLGLDD------------NRLCQWDMRD  394 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~------~V~I~vvsfsPd~K~~q~~~g~~laSGS~D------------~tIklWD~R~  394 (634)
                      ++|++||+.+|+++..+..+..      .+  ..++|+|+        |+.+++++.+            ++|++||+.+
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~--~~~~~spd--------g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSVPGEVGRSM--YSFAISPD--------GKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCSTTEEEECS--SCEEECTT--------SSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             CcEEEEeCCCCcEEEEEEcccccccccccc--cceEECCC--------CCEEEEEcccccccccccccCCCeEEEEECCC
Confidence            6899999999999998875331      12  24589999        6788888865            9999999986


Q ss_pred             CCc--eEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCC----------
Q 047036          395 RSG--IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGL----------  462 (634)
Q Consensus       395 ~~~--~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH----------  462 (634)
                      +..  .+..+.                ....+.+++++|+|.|++++  +.|++||+.+++ ....++.+          
T Consensus       135 ~~~~~~~~~~~----------------~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~  195 (349)
T 1jmx_B          135 GLEAKPVRTFP----------------MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGK-YTVALPLRNWNRKGYSAP  195 (349)
T ss_dssp             GGGBCCSEEEE----------------CCSSCCCEEECTTSCEEEES--SSEEEECTTTCC-EEEEECSTTCCCTTBCCC
T ss_pred             ccccceeeecc----------------CCCcccceeECCCCcEEEcc--CcEEEEeCCCCc-eeccccccccCCccccCc
Confidence            421  112211                11135678899999766664  449999987764 33334322          


Q ss_pred             ----------------------------------------------------------CCCeEEEEECC-CCCEEEEEcC
Q 047036          463 ----------------------------------------------------------GSPITHVDVTY-DGKWILGTTD  483 (634)
Q Consensus       463 ----------------------------------------------------------~d~ItsVdfSp-DGk~LlSS~D  483 (634)
                                                                                +..+.+++||| ||++|+++ +
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~  274 (349)
T 1jmx_B          196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L  274 (349)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E
T ss_pred             cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-c
Confidence                                                                      12456788899 99999888 9


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEE
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIW  563 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiW  563 (634)
                      +.|.+||+.    +++.+..+.....   |                ..+.|+|+        |  ...++++.++.|.+|
T Consensus       275 ~~v~~~d~~----~~~~~~~~~~~~~---~----------------~~~~~s~d--------g--~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          275 NRLAKYDLK----QRKLIKAANLDHT---Y----------------YCVAFDKK--------G--DKLYLGGTFNDLAVF  321 (349)
T ss_dssp             SEEEEEETT----TTEEEEEEECSSC---C----------------CEEEECSS--------S--SCEEEESBSSEEEEE
T ss_pred             CeEEEEECc----cCeEEEEEcCCCC---c----------------cceEECCC--------C--CEEEEecCCCeEEEE
Confidence            999999975    4554433321100   0                12334433        2  245556678899999


Q ss_pred             eChh
Q 047036          564 DFQQ  567 (634)
Q Consensus       564 dl~~  567 (634)
                      |++.
T Consensus       322 d~~~  325 (349)
T 1jmx_B          322 NPDT  325 (349)
T ss_dssp             ETTT
T ss_pred             eccc
Confidence            9863

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.52  E-value=1.7e-13  Score=152.30  Aligned_cols=150  Identities=10%  Similarity=0.022  Sum_probs=104.5

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC---CcceeEEEEecCCCCCCCCCCCE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD---GTDITMRDITNDTKSSQLDPSES  377 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~---~V~I~vvsfsPd~K~~q~~~g~~  377 (634)
                      .+.+|+|++.++        ++ +.|      ++|++||+.+|++...+.+|..   .|  ..++||||        |+.
T Consensus        20 ~~~~~spdg~~~--------~~-~~d------g~i~~~d~~~g~~~~~~~~~~~~~~~v--~~~~~SpD--------g~~   74 (723)
T 1xfd_A           20 PEAKWISDTEFI--------YR-EQK------GTVRLWNVETNTSTVLIEGKKIESLRA--IRYEISPD--------REY   74 (723)
T ss_dssp             CCCCBSSSSCBC--------CC-CSS------SCEEEBCGGGCCCEEEECTTTTTTTTC--SEEEECTT--------SSE
T ss_pred             cccEEcCCCcEE--------EE-eCC------CCEEEEECCCCcEEEEecccccccccc--ceEEECCC--------CCE
Confidence            566778776433        22 222      6899999999999999988874   24  35699999        678


Q ss_pred             EEEEeCC---------CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEE
Q 047036          378 TFLGLDD---------NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLY  447 (634)
Q Consensus       378 laSGS~D---------~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLW  447 (634)
                      |++++.+         ++|++||+.++..  +.+..+.        +    ....+.++++|||| +||.++. ++|++|
T Consensus        75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~--------~----~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPE--------V----SNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             EEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTT--------C----CSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             EEEEecCccceeecceeeEEEEECCCCce--EeccCCc--------c----ccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            9999875         7888999987653  3342111        1    11124567889999 7999887 899999


Q ss_pred             eccccccccccccCCCCCe------------------EEEEECCCCCEEEE-EcC-CcEEEEEc
Q 047036          448 SKTSMRQAKTAFPGLGSPI------------------THVDVTYDGKWILG-TTD-TYLILICT  491 (634)
Q Consensus       448 D~~t~r~akt~L~GH~d~I------------------tsVdfSpDGk~LlS-S~D-~tIrLWD~  491 (634)
                      |+.+++ ....+.++...|                  .+++|||||++||. +.| +.+++|++
T Consensus       140 ~~~~g~-~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~  202 (723)
T 1xfd_A          140 AHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (723)
T ss_dssp             SSSSSC-CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ECCCCc-eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe
Confidence            998764 444444433333                  78999999999998 544 34555543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.52  E-value=8e-13  Score=131.78  Aligned_cols=132  Identities=14%  Similarity=0.093  Sum_probs=96.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|++||+++|+++..+..+...  . .++|+|+        ++.+++++. +++|++||+.++...+..+..+..    
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~~--~-~~~~s~d--------g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----   84 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYDF--V-DTAITSD--------CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS----   84 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCCE--E-EEEECSS--------SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS----
T ss_pred             CeEEEEeCcccceeeeEEccCCc--c-eEEEcCC--------CCEEEEEeCCCCeEEEEECCCCceeEEecccCCC----
Confidence            69999999999999998876553  2 5599998        555555554 899999999876532444432222    


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCC---cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCc
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG---KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTY  485 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DG---tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~t  485 (634)
                                 +..+++++|+| +|+++..++   .|++||+.+++ ....++. +..+.+++|+|||++|++  ..++.
T Consensus        85 -----------~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           85 -----------SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPI-PYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             -----------CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             -----------CccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEEC-CCCccceEECCCCCEEEEEecCCCc
Confidence                       12337889999 677555553   89999998764 5556664 445699999999997765  44578


Q ss_pred             -EEEEEcc
Q 047036          486 -LILICTL  492 (634)
Q Consensus       486 -IrLWD~~  492 (634)
                       |.+|++.
T Consensus       152 ~i~~~~~~  159 (331)
T 3u4y_A          152 TVRRFKID  159 (331)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence             9999975

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.52  E-value=5.1e-13  Score=147.86  Aligned_cols=141  Identities=9%  Similarity=0.098  Sum_probs=107.5

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc--CC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM--RD  394 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~--R~  394 (634)
                      +.+++++..+      ++|++||+.+|+++.++..+.. +  ..++|+||        ++.+++++.|++|++||+  .+
T Consensus       149 ~~~~vs~~~d------~~V~v~D~~t~~~~~~i~~g~~-~--~~v~~spd--------g~~l~v~~~d~~V~v~D~~~~t  211 (543)
T 1nir_A          149 NLFSVTLRDA------GQIALVDGDSKKIVKVIDTGYA-V--HISRMSAS--------GRYLLVIGRDARIDMIDLWAKE  211 (543)
T ss_dssp             GEEEEEEGGG------TEEEEEETTTCCEEEEEECSTT-E--EEEEECTT--------SCEEEEEETTSEEEEEETTSSS
T ss_pred             CEEEEEEcCC------CeEEEEECCCceEEEEEecCcc-c--ceEEECCC--------CCEEEEECCCCeEEEEECcCCC
Confidence            3345555543      7999999999999999994433 3  46699999        679999999999999999  66


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECC----CC-eEEEEE-CCCcEEEEeccccccccccccC-------
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG----DG-SIVVGS-LDGKIRLYSKTSMRQAKTAFPG-------  461 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~----dG-~IASGS-~DGtIRLWD~~t~r~akt~L~G-------  461 (634)
                      .. ++.++..                .....+++++|    +| +|++++ .+++|+|||..+++ .+..++.       
T Consensus       212 ~~-~~~~i~~----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~  273 (543)
T 1nir_A          212 PT-KVAEIKI----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDT  273 (543)
T ss_dssp             CE-EEEEEEC----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSS
T ss_pred             Cc-EEEEEec----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCc
Confidence            43 4555531                12346789999    88 788888 58999999998874 5555554       


Q ss_pred             ---CCC-CeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          462 ---LGS-PITHVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       462 ---H~d-~ItsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                         |.. .+.+|.+||+|..++.  ..+++|.+||+.
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~  310 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  310 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence               223 7899999998877654  568999999975

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.51  E-value=2e-12  Score=129.08  Aligned_cols=150  Identities=17%  Similarity=0.141  Sum_probs=108.3

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC-EEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE-STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +++|++||+.+|++++++..+...   ..++|+|+        ++ .++++..+++|.+||+.++. ++..+..+...  
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~s~d--------g~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~--  133 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKP---FGATINNT--------TQTLWFGNTVNSAVTAIDAKTGE-VKGRLVLDDRK--  133 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCC---CSEEEETT--------TTEEEEEETTTTEEEEEETTTCC-EEEEEESCCCC--
T ss_pred             CccEEEEcCCCCeEEEEEecCCCc---ceEEECCC--------CCEEEEEecCCCEEEEEeCCCCe-eEEEEecCCCc--
Confidence            368999999999999999876542   23589998        45 55566668999999998865 34554322110  


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEE--CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcE
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGS--LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYL  486 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS--~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tI  486 (634)
                          ...+.......+++++++| +|++++  .++.|.+||..+++ ....++.++..+.+++|+|||++|++ +.++.|
T Consensus       134 ----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i  208 (353)
T 3vgz_A          134 ----RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGKRLYTTNADGEL  208 (353)
T ss_dssp             ----CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred             ----cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCCEEEEEcCCCeE
Confidence                0001111225678999998 676665  58999999998864 66677767777999999999999988 778999


Q ss_pred             EEEEcccccCCCCeeeee
Q 047036          487 ILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~gF  504 (634)
                      .+||+.    +++.+..+
T Consensus       209 ~~~d~~----~~~~~~~~  222 (353)
T 3vgz_A          209 ITIDTA----DNKILSRK  222 (353)
T ss_dssp             EEEETT----TTEEEEEE
T ss_pred             EEEECC----CCeEEEEE
Confidence            999975    45544433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.51  E-value=6.6e-13  Score=131.06  Aligned_cols=153  Identities=13%  Similarity=0.118  Sum_probs=107.1

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC--CcceeEEEEecCCCCCCCCCCCE-EEEEeCCCeEEEEEcCCC
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD--GTDITMRDITNDTKSSQLDPSES-TFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~--~V~I~vvsfsPd~K~~q~~~g~~-laSGS~D~tIklWD~R~~  395 (634)
                      +|++++.+      ++|++||+.+|++++++..+..  .+  ..++|+|+        +.. +++++.++.|++||+.++
T Consensus         3 ~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~--~~~~~s~d--------g~~l~v~~~~~~~v~~~d~~~~   66 (337)
T 1pby_B            3 YILAPARP------DKLVVIDTEKMAVDKVITIADAGPTP--MVPMVAPG--------GRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEEETT------TEEEEEETTTTEEEEEEECTTCTTCC--CCEEECTT--------SSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEcCCC------CeEEEEECCCCcEEEEEEcCCCCCCc--cceEEcCC--------CCEEEEEeCCCCeEEEEECCCC
Confidence            45666554      6999999999999999874431  12  24589998        444 566677899999999876


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE------------CCCcEEEEeccccccccccccCC
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS------------LDGKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS------------~DGtIRLWD~~t~r~akt~L~GH  462 (634)
                      . .+..+.....          ........+++++++| +|++++            .++.|++||+.+++ ....++. 
T Consensus        67 ~-~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-  133 (337)
T 1pby_B           67 E-TLGRIDLSTP----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-  133 (337)
T ss_dssp             C-EEEEEECCBT----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-
T ss_pred             C-eEeeEEcCCc----------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeC-
Confidence            5 3444421000          0001123467889999 788886            68999999998763 4455553 


Q ss_pred             CCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeec
Q 047036          463 GSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +..+.+++|||||++|+.+ ++.|.+||+.    .|+.+..+.
T Consensus       134 ~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~----~~~~~~~~~  171 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL-GRDLHVMDPE----AGTLVEDKP  171 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE-SSSEEEEETT----TTEEEEEEC
T ss_pred             CCCcceeEECCCCCEEEEe-CCeEEEEECC----CCcEeeeee
Confidence            5568999999999998887 7899999975    465554444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.51  E-value=4.7e-12  Score=125.24  Aligned_cols=177  Identities=11%  Similarity=0.107  Sum_probs=111.2

Q ss_pred             CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC--CCc--EEEE
Q 047036          273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE--TGK--IVTE  348 (634)
Q Consensus       273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle--TGK--~V~~  348 (634)
                      ..|.+|.....|-. . ....+.......+.+|+|+        +++|++++.++     ++|++||+.  +|+  .+..
T Consensus        15 ~~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~spd--------g~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A           15 QQIHVWNLNHEGAL-T-LTQVVDVPGQVQPMVVSPD--------KRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             TEEEEEEECTTSCE-E-EEEEEECSSCCCCEEECTT--------SSEEEEEETTT-----TEEEEEEECTTTCCEEEEEE
T ss_pred             CeEEEEEECCCCcE-E-EeeeEecCCCCceEEECCC--------CCEEEEeecCC-----CeEEEEEecCCCCceeeccc
Confidence            57778876433310 0 1111211112244555554        44455554432     689999998  776  4566


Q ss_pred             EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEEEcCCCC--ceEEecccCCCCccccccccccccCcceE
Q 047036          349 WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQ  425 (634)
Q Consensus       349 lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fs  425 (634)
                      +..+. .+  ..++|+|+        ++.+++++ .+++|++||+..+.  ..++.+..                .....
T Consensus        80 ~~~~~-~~--~~~~~s~d--------g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------------~~~~~  132 (343)
T 1ri6_A           80 SALPG-SL--THISTDHQ--------GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG----------------LDGCH  132 (343)
T ss_dssp             EECSS-CC--SEEEECTT--------SSEEEEEETTTTEEEEEEEETTEEEEEEEEECC----------------CTTBC
T ss_pred             cccCC-CC--cEEEEcCC--------CCEEEEEecCCCeEEEEECCCCccccccccccC----------------CCCce
Confidence            76655 33  45699998        56666555 58999999995221  22333321                11245


Q ss_pred             EEEECCCC-eEEEEE-CCCcEEEEeccc-cccccc----ccc-CCCCCeEEEEECCCCCEEEE-E-cCCcEEEEEcc
Q 047036          426 CFASTGDG-SIVVGS-LDGKIRLYSKTS-MRQAKT----AFP-GLGSPITHVDVTYDGKWILG-T-TDTYLILICTL  492 (634)
Q Consensus       426 sva~s~dG-~IASGS-~DGtIRLWD~~t-~r~akt----~L~-GH~d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~  492 (634)
                      +++++|+| +|++++ .++.|++||+.+ ++ ...    .+. ..+..+.+++|+|||++|+. + .+++|.+||+.
T Consensus       133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          133 SANISPDNRTLWVPALKQDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             EEEECCCCCEEEEecCCCCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            67899999 688877 899999999875 32 211    122 24567899999999998876 4 68999999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.49  E-value=3.6e-13  Score=149.61  Aligned_cols=214  Identities=11%  Similarity=0.077  Sum_probs=130.1

Q ss_pred             EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCC----CCcccccCcceeeEEeCCcceEEecCCCCCC-
Q 047036          258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGS----SKIGSNSTPKKALLMRGETNMMLMSPLKDGK-  329 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~----~~~g~~fsP~~~mL~~~D~~mllsss~d~~~-  329 (634)
                      ...+.+ +|++|++.+  .+|.+|....+.     ....+.++.    .+.+.+|+|++        ++|+++..+... 
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~-----~~~~~~~~~~~~~~v~~~~~SpDg--------~~l~~~~~~~~~~   85 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNT-----STVLIEGKKIESLRAIRYEISPDR--------EYALFSYNVEPIY   85 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCC-----CEEEECTTTTTTTTCSEEEECTTS--------SEEEEEESCCCCS
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCc-----EEEEeccccccccccceEEECCCC--------CEEEEEecCccce
Confidence            455666 777766653  367777654432     122233332    13455566655        444444432210 


Q ss_pred             --CCCCcEEEEeCCCCcEEEEEe---ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc
Q 047036          330 --PQAPGVQQLDIETGKIVTEWK---FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK  404 (634)
Q Consensus       330 --~~~~TIrlWDleTGK~V~~lk---gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g  404 (634)
                        ..+++|++||+.+|++ +.+.   +|...|  ..++||||        |+.||.++. +.|++||+.++.. ++....
T Consensus        86 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~--~~~~~SPd--------G~~la~~~~-~~i~~~~~~~g~~-~~~~~~  152 (723)
T 1xfd_A           86 QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKL--QYAGWGPK--------GQQLIFIFE-NNIYYCAHVGKQA-IRVVST  152 (723)
T ss_dssp             SSCCCSEEEEEESSSCCC-EECCCTTCCSCCC--SBCCBCSS--------TTCEEEEET-TEEEEESSSSSCC-EEEECC
T ss_pred             eecceeeEEEEECCCCce-EeccCCccccccc--cccEECCC--------CCEEEEEEC-CeEEEEECCCCce-EEEecC
Confidence              1136899999999986 4444   444334  34599999        668888886 7999999987653 333322


Q ss_pred             CCCCcccccccc-ccc----cCcceEEEEECCCC-eEEEEECCC----------------------------------cE
Q 047036          405 GDSPVLHWTQGH-QFS----RGTNFQCFASTGDG-SIVVGSLDG----------------------------------KI  444 (634)
Q Consensus       405 h~s~V~~~~~g~-~y~----~~~~fssva~s~dG-~IASGS~DG----------------------------------tI  444 (634)
                      +...+..  .|+ +++    .-..+.+++++||| +||+++.|+                                  +|
T Consensus       153 ~~~~~~~--~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIY--NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEE--EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceE--CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            2211100  000 000    00123688999999 799988664                                  89


Q ss_pred             EEEeccccccccccccCC------CCCeEEEEECCCCCEEEE-Ec----CCcEEEEEcccccCCCCeeeee
Q 047036          445 RLYSKTSMRQAKTAFPGL------GSPITHVDVTYDGKWILG-TT----DTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       445 RLWD~~t~r~akt~L~GH------~d~ItsVdfSpDGk~LlS-S~----D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      ++||+.+++ ....|..|      ...|.+++|||||++|++ +.    +..|++||+.    .|++...+
T Consensus       231 ~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~----~g~~~~~~  296 (723)
T 1xfd_A          231 HVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----TGVCTKKH  296 (723)
T ss_dssp             EEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----TCCEEEEE
T ss_pred             EEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC----CCcceEEE
Confidence            999998763 44455544      678999999999999977 43    2579999975    45554433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.48  E-value=7e-13  Score=147.99  Aligned_cols=124  Identities=15%  Similarity=0.070  Sum_probs=91.3

Q ss_pred             cEEEEeCCCCcEEEEEeccCCC----------------------cceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          334 GVQQLDIETGKIVTEWKFEKDG----------------------TDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~----------------------V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      +|++||+.+|+..+.+.+|...                      ..+..++|+||        |+.|++++. ++|++||
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD--------g~~l~~~~~-~~i~~~d  135 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD--------AQRLLFPLG-GELYLYD  135 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT--------SSEEEEEET-TEEEEEE
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC--------CCEEEEEeC-CcEEEEE
Confidence            8999999999998888776433                      01234599999        678888887 9999999


Q ss_pred             cCCCC--ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCC---
Q 047036          392 MRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP---  465 (634)
Q Consensus       392 ~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~---  465 (634)
                      +.++.  . +..+..|.               ..+.+++++||| +||.++ ++.|++||+.+++ .......+...   
T Consensus       136 ~~~~~~~~-~~~l~~~~---------------~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~~~~~~~~~~~~~  197 (741)
T 2ecf_A          136 LKQEGKAA-VRQLTHGE---------------GFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QMQLTADGSTTIGN  197 (741)
T ss_dssp             SSSCSTTS-CCBCCCSS---------------SCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EEECCCCCCSSEEE
T ss_pred             CCCCCcce-EEEcccCC---------------cccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EEEeccCCccceec
Confidence            98762  2 23343222               236788999999 688887 5699999998763 44444444443   


Q ss_pred             -------------eEEEEECCCCCEEEE-EcCC
Q 047036          466 -------------ITHVDVTYDGKWILG-TTDT  484 (634)
Q Consensus       466 -------------ItsVdfSpDGk~LlS-S~D~  484 (634)
                                   +.+++|||||++|+. +.|+
T Consensus       198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             cccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence                         478999999999998 6665

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.47  E-value=1.4e-12  Score=142.42  Aligned_cols=187  Identities=11%  Similarity=0.067  Sum_probs=117.4

Q ss_pred             EEEeee-CCCeEEEe----cCeeeEEEccCCceecceeEEEecCCC--CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVS----DLGLQVYRNYNRGIHNKGVSVRFDGGS--SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP  330 (634)
Q Consensus       258 ~LavG~-~D~sfvv~----G~~igV~k~~~~gl~~~~~~~~~~~~~--~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~  330 (634)
                      +.++.+ +|+..|+-    +.++.||.. .+|     ....+..+.  ...+.+|+|+ .+++..+.     ++.++   
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~-~~g-----~~~~lt~~~~~~~~~~~~spd-~~l~~~~~-----~~g~~---   88 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLY-DGG-----ETVKLNREPINSVLDPHYGVG-RVILVRDV-----SKGAE---   88 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEE-ETT-----EEEECCSSCCSEECEECTTCS-EEEEEEEC-----STTSC---
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEE-cCC-----CcEeeecccccccccccCCCC-eEEEEecc-----CCCCc---
Confidence            666666 88877763    457889986 333     223443332  3366778888 44432210     01111   


Q ss_pred             CCCcEEEEeC-CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          331 QAPGVQQLDI-ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       331 ~~~TIrlWDl-eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                       ...|+.|++ ..|... .+..+.. +  .+.+|+|+++      +..+++++.++++ +||+.++..  ..+..+    
T Consensus        89 -~~~l~~~~~~~~g~~~-~l~~~~~-~--~~~~~s~dg~------~~~~~s~~~~~~~-l~d~~~g~~--~~l~~~----  150 (582)
T 3o4h_A           89 -QHALFKVNTSRPGEEQ-RLEAVKP-M--RILSGVDTGE------AVVFTGATEDRVA-LYALDGGGL--RELARL----  150 (582)
T ss_dssp             -CEEEEEEETTSTTCCE-ECTTSCS-B--EEEEEEECSS------CEEEEEECSSCEE-EEEEETTEE--EEEEEE----
T ss_pred             -ceEEEEEeccCCCccc-cccCCCC-c--eeeeeCCCCC------eEEEEecCCCCce-EEEccCCcE--EEeecC----
Confidence             124555666 124333 4443332 2  3558999854      2245555555555 999987642  233211    


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECC----CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD----GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD  483 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D----GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D  483 (634)
                            +       ..+++++||| +||+++.|    ++|++||+.+++ . ..|.+|...+.+++|||||++|++ ..+
T Consensus       151 ------~-------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~  215 (582)
T 3o4h_A          151 ------P-------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-L-RVFDSGEGSFSSASISPGMKVTAGLETA  215 (582)
T ss_dssp             ------S-------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-C-EEECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred             ------C-------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-c-eEeecCCCccccceECCCCCEEEEccCC
Confidence                  0       1467889999 78988888    889999988763 3 467889999999999999999998 667


Q ss_pred             C--cEEEEEcc
Q 047036          484 T--YLILICTL  492 (634)
Q Consensus       484 ~--tIrLWD~~  492 (634)
                      +  .|++||+.
T Consensus       216 ~~~~i~~~d~~  226 (582)
T 3o4h_A          216 REARLVTVDPR  226 (582)
T ss_dssp             SCEEEEEECTT
T ss_pred             CeeEEEEEcCC
Confidence            7  89999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.45  E-value=5.3e-12  Score=125.50  Aligned_cols=155  Identities=12%  Similarity=0.206  Sum_probs=103.4

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC-CcceeEEEEecCCCCCCCCCCCE-EEEEeCCCeEEEEEcCCC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD-GTDITMRDITNDTKSSQLDPSES-TFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~-~V~I~vvsfsPd~K~~q~~~g~~-laSGS~D~tIklWD~R~~  395 (634)
                      .++++++.+      ++|++||+.+|++++++..+.. .+  ..++|+|+        ++. ++++..+++|.+||+.++
T Consensus        12 ~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~d--------g~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B           12 EYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGP--GTAMMAPD--------NRTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             EEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSS--CEEEECTT--------SSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCC--ceeEECCC--------CCEEEEEeCCCCcEEEEeCCCC
Confidence            345555543      6999999999999999987651 22  34589998        454 456667899999999875


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC------------CcEEEEecccccc--cccccc
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD------------GKIRLYSKTSMRQ--AKTAFP  460 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D------------GtIRLWD~~t~r~--akt~L~  460 (634)
                      + .+..+..+..+        . .......+++++|+| +|++++.+            +.|++||+.+++.  ....+.
T Consensus        76 ~-~~~~~~~~~~~--------~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           76 K-NTFHANLSSVP--------G-EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             E-EEEEEESCCST--------T-EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             c-EEEEEEccccc--------c-cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            4 33443211000        0 001123567899999 78888866            9999999887431  112233


Q ss_pred             CCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeec
Q 047036          461 GLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       461 GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                       +...|.+++|+|||+ |+++ ++.|.+||+.    +|+.+..+.
T Consensus       146 -~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~----~~~~~~~~~  183 (349)
T 1jmx_B          146 -MPRQVYLMRAADDGS-LYVA-GPDIYKMDVK----TGKYTVALP  183 (349)
T ss_dssp             -CCSSCCCEEECTTSC-EEEE-SSSEEEECTT----TCCEEEEEC
T ss_pred             -CCCcccceeECCCCc-EEEc-cCcEEEEeCC----CCceecccc
Confidence             334689999999999 5552 3459999975    566666554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=150.78  Aligned_cols=121  Identities=15%  Similarity=0.160  Sum_probs=89.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCC---CcceeEEEEecCCCCCCCCCCCEEEEEeC---------CCeEEEEEcCCCCceE-
Q 047036          333 PGVQQLDIETGKIVTEWKFEKD---GTDITMRDITNDTKSSQLDPSESTFLGLD---------DNRLCQWDMRDRSGIV-  399 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~---~V~I~vvsfsPd~K~~q~~~g~~laSGS~---------D~tIklWD~R~~~~~V-  399 (634)
                      ++|++||+.+|++...+.+|..   .|  ..++||||        |+.|++++.         +++|++||+.++..+. 
T Consensus        36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~SpD--------g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~  105 (719)
T 1z68_A           36 NNIVLYNIETGQSYTILSNRTMKSVNA--SNYGLSPD--------RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG  105 (719)
T ss_dssp             SCEEEEESSSCCEEEEECHHHHHTTTC--SEEEECTT--------SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS
T ss_pred             CCEEEEEcCCCcEEEEEccccccccce--eeEEECCC--------CCeEEEEecCceeEEeecceEEEEEECCCCccccc
Confidence            6899999999999888887754   23  35599999        678888877         7999999998753200 


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc-cccCCCCCe-----------
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPI-----------  466 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~I-----------  466 (634)
                      ..+                  ...+.++++|||| +||+++ |++|++||+.+++ ... +..++...|           
T Consensus       106 ~~l------------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~-~~~l~~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A          106 NEL------------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP-PFQITFNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             SCC------------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC-CEECCCCCBTTTEEESSCCHHHHH
T ss_pred             eec------------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC-cEEEecCCCcCCeEcccccceeee
Confidence            111                  1124668999999 788886 7899999998764 332 224444433           


Q ss_pred             ------EEEEECCCCCEEEE-EcC
Q 047036          467 ------THVDVTYDGKWILG-TTD  483 (634)
Q Consensus       467 ------tsVdfSpDGk~LlS-S~D  483 (634)
                            .+++|||||++||+ +.|
T Consensus       166 e~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          166 EMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             HTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             ecccCcccEEECCCCCEEEEEEEC
Confidence                  48999999999998 655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.45  E-value=3.1e-12  Score=142.81  Aligned_cols=167  Identities=11%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +++|++.|+.++.       ++|++||+.+|+  .++.+..|...+  ..++|+||        |+.|+.++ ++.|++|
T Consensus       116 ~SpDg~~l~~~~~-------~~i~~~d~~~~~~~~~~~l~~~~~~~--~~~~~SPD--------G~~la~~~-~~~i~~~  177 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-------GELYLYDLKQEGKAAVRQLTHGEGFA--TDAKLSPK--------GGFVSFIR-GRNLWVI  177 (741)
T ss_dssp             ECTTSSEEEEEET-------TEEEEEESSSCSTTSCCBCCCSSSCE--EEEEECTT--------SSEEEEEE-TTEEEEE
T ss_pred             ECCCCCEEEEEeC-------CcEEEEECCCCCcceEEEcccCCccc--ccccCCCC--------CCEEEEEe-CCcEEEE
Confidence            3444455555543       479999999883  456677887765  45699999        67888887 4699999


Q ss_pred             EcCCCCceEEecccCCCCcccccccc-ccc---cCcceEEEEECCCC-eEEEEECCC-----------------------
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGH-QFS---RGTNFQCFASTGDG-SIVVGSLDG-----------------------  442 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~-~y~---~~~~fssva~s~dG-~IASGS~DG-----------------------  442 (634)
                      |+.++. ..+....+...+..   ++ .+.   ....+.+++++||| +||+++.|+                       
T Consensus       178 d~~~g~-~~~~~~~~~~~~~~---g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          178 DLASGR-QMQLTADGSTTIGN---GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             ETTTTE-EEECCCCCCSSEEE---SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             ecCCCC-EEEeccCCccceec---cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            998753 22322222111100   00 000   00113567899999 799998876                       


Q ss_pred             ----------cEEEEeccc-ccccccccc--CCCCCeEEEEECCCCCEEEE-Ec-----CCcEEEEEcccccCCCCeeee
Q 047036          443 ----------KIRLYSKTS-MRQAKTAFP--GLGSPITHVDVTYDGKWILG-TT-----DTYLILICTLFSDKDGKTKTG  503 (634)
Q Consensus       443 ----------tIRLWD~~t-~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~-----D~tIrLWD~~~~~~~G~~~~g  503 (634)
                                .|++||+.+ ++ ......  +|...|.+++| |||++|+. +.     +..|.+||+.    +|++...
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~  327 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVL  327 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC----CCceEEE
Confidence                      899999887 64 333222  58889999999 99999997 43     5679999975    5665554


Q ss_pred             ecCC
Q 047036          504 FSGR  507 (634)
Q Consensus       504 F~gh  507 (634)
                      +..+
T Consensus       328 ~~~~  331 (741)
T 2ecf_A          328 AHET  331 (741)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            4433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.43  E-value=1.1e-11  Score=145.94  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=103.5

Q ss_pred             CcEEEEeCCCCcEEEEEecc-----------CCCcceeEEEEe-cCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEE
Q 047036          333 PGVQQLDIETGKIVTEWKFE-----------KDGTDITMRDIT-NDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQ  400 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH-----------~~~V~I~vvsfs-Pd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq  400 (634)
                      ++|++||++++++ ..+.++           ...|  ..++|+ ||        |..|++++ ++.|++||+..+.  +.
T Consensus       265 ~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v--~~~~~S~pd--------G~~la~~~-~~~i~~~~~~~~~--~~  330 (1045)
T 1k32_A          265 GSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSK--FAEDFSPLD--------GDLIAFVS-RGQAFIQDVSGTY--VL  330 (1045)
T ss_dssp             TEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGG--GEEEEEECG--------GGCEEEEE-TTEEEEECTTSSB--EE
T ss_pred             CEEEEecCCceEe-eeeccCccccccccccccccc--ceeeecCCC--------CCEEEEEE-cCEEEEEcCCCCc--eE
Confidence            6899999965554 477763           3344  356999 99        56777777 8899999998653  23


Q ss_pred             ecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEE-EEeccccccccccccCCCCCeEEEEECCCCCEE
Q 047036          401 NMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIR-LYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWI  478 (634)
Q Consensus       401 ~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIR-LWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~L  478 (634)
                      .+..|..              ..+.+++++ +| .|++++.++.|. +||+.+++ . ..+.+|...|.+++|||||++|
T Consensus       331 ~~~~~~~--------------~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~-~~l~~~~~~~~~~~~SpDG~~l  393 (1045)
T 1k32_A          331 KVPEPLR--------------IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-A-EKFEENLGNVFAMGVDRNGKFA  393 (1045)
T ss_dssp             ECSCCSC--------------EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-E-EECCCCCCSEEEEEECTTSSEE
T ss_pred             EccCCCc--------------ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-c-eEecCCccceeeeEECCCCCEE
Confidence            3432221              146788899 88 799999988888 99987642 3 3455888999999999999999


Q ss_pred             EE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          479 LG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       479 lS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      ++ +.++.|++||+.    +|+....+.+|.
T Consensus       394 a~~~~~~~v~~~d~~----tg~~~~~~~~~~  420 (1045)
T 1k32_A          394 VVANDRFEIMTVDLE----TGKPTVIERSRE  420 (1045)
T ss_dssp             EEEETTSEEEEEETT----TCCEEEEEECSS
T ss_pred             EEECCCCeEEEEECC----CCceEEeccCCC
Confidence            98 889999999975    455544443443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.42  E-value=1.1e-10  Score=117.76  Aligned_cols=155  Identities=12%  Similarity=0.217  Sum_probs=95.3

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCC-CCc--EEEEEeccCCC-------cceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIE-TGK--IVTEWKFEKDG-------TDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDle-TGK--~V~~lkgH~~~-------V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      +++|+++|+++...+     ++|++||+. +|+  .+..+......       ..+..++|+|+        +++++++.
T Consensus        93 ~spdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd--------g~l~v~~~  159 (347)
T 3hfq_A           93 VDEARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD--------NRLAVIDL  159 (347)
T ss_dssp             EETTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT--------SCEEEEET
T ss_pred             ECCCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC--------CcEEEEeC
Confidence            345556555554332     789999995 343  34444322111       01244699999        56777778


Q ss_pred             CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE-EECCCcEEEEeccc--cc-cccc
Q 047036          383 DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKTS--MR-QAKT  457 (634)
Q Consensus       383 ~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~t--~r-~akt  457 (634)
                      .+++|++||+...+.+ ..+...           ..........++++|+| +|++ +..++.|++|++..  ++ ....
T Consensus       160 ~~~~v~~~~~~~~g~~-~~~~~~-----------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQL-SEQSVL-----------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             TTTEEEEEEECTTSCE-EEEEEE-----------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEECCCCcE-EEeeeE-----------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence            8999999999843332 111100           00011224568999999 4655 56789999999763  21 0111


Q ss_pred             cccCCC------CCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          458 AFPGLG------SPITHVDVTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       458 ~L~GH~------d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      .+..+.      ..+.+|+|||||++|+ + ..+++|.+|++.
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            222222      4589999999999985 4 568999999975

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.42  E-value=6.5e-11  Score=119.50  Aligned_cols=157  Identities=8%  Similarity=0.099  Sum_probs=101.8

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEE--EEeccCC-CcceeEEEEecCCCCCCCCCCC-EEEEEeCCC
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVT--EWKFEKD-GTDITMRDITNDTKSSQLDPSE-STFLGLDDN  385 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~--~lkgH~~-~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~  385 (634)
                      +.+++++++++++..+      ++|++||+. +|++..  .+..+.. .+  .-++|+||        |+ +++++..++
T Consensus       146 ~~~spdg~l~v~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~g~~p--~~~~~spd--------g~~l~v~~~~~~  209 (347)
T 3hfq_A          146 TDLTPDNRLAVIDLGS------DKVYVYNVSDAGQLSEQSVLTMEAGFGP--RHLVFSPD--------GQYAFLAGELSS  209 (347)
T ss_dssp             EEECTTSCEEEEETTT------TEEEEEEECTTSCEEEEEEEECCTTCCE--EEEEECTT--------SSEEEEEETTTT
T ss_pred             EEECCCCcEEEEeCCC------CEEEEEEECCCCcEEEeeeEEcCCCCCC--ceEEECCC--------CCEEEEEeCCCC
Confidence            4455666644554433      689999998 676543  3333333 22  34599999        55 455567789


Q ss_pred             eEEEEEcCCC-Cce--EEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccc-cc-ccccc
Q 047036          386 RLCQWDMRDR-SGI--VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTS-MR-QAKTA  458 (634)
Q Consensus       386 tIklWD~R~~-~~~--Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t-~r-~akt~  458 (634)
                      +|++||+... +.+  ++.+.....         .+.......+++++|+| +| +++..++.|++||+.. +. .....
T Consensus       210 ~v~v~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          210 QIASLKYDTQTGAFTQLGIVKTIPA---------DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESSCT---------TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             EEEEEEecCCCCceEEeeeeeecCC---------CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            9999998752 221  222211100         01111346789999999 56 5567799999999862 11 23456


Q ss_pred             ccCCCCCeEEEEECCCCCEEEE-Ec-CCcEEEEEcc
Q 047036          459 FPGLGSPITHVDVTYDGKWILG-TT-DTYLILICTL  492 (634)
Q Consensus       459 L~GH~d~ItsVdfSpDGk~LlS-S~-D~tIrLWD~~  492 (634)
                      ++.|+..+.+|+|||||++|++ +. ++.|.+|++.
T Consensus       281 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          281 ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            6777888999999999999987 54 4899999653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.41  E-value=8.2e-12  Score=138.80  Aligned_cols=204  Identities=9%  Similarity=-0.000  Sum_probs=130.3

Q ss_pred             cEEEeee-CCCeEEEe-cCeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVS-DLGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~-G~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      ...++.+ +|+.+++. +..|.+|....+.      ...+..+ ......+|+|++.        .|+.+. +      +
T Consensus        83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~SpdG~--------~la~~~-~------~  141 (706)
T 2z3z_A           83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARK------VTYLFDTNEETASLDFSPVGD--------RVAYVR-N------H  141 (706)
T ss_dssp             CCEEEEETTTTEEEEEETTEEEEEETTTTE------EEEEECCTTCCTTCEECTTSS--------EEEEEE-T------T
T ss_pred             CceeEEECCCCeEEEEECCEEEEEECCCCc------eEEccCCcccccCCcCCCCCC--------EEEEEE-C------C
Confidence            3555666 77655554 4688888864432      2222222 2235566777654        344432 2      5


Q ss_pred             cEEEEeCCC-----CcEEEEEeccCCCc------------ceeEEEEecCCCCCCCCCCCEEEEEe--------------
Q 047036          334 GVQQLDIET-----GKIVTEWKFEKDGT------------DITMRDITNDTKSSQLDPSESTFLGL--------------  382 (634)
Q Consensus       334 TIrlWDleT-----GK~V~~lkgH~~~V------------~I~vvsfsPd~K~~q~~~g~~laSGS--------------  382 (634)
                      +|++||+.+     |+.++....+...+            .+..++|+||        |+.|++++              
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD--------g~~la~~~~d~~~~~~~~~~~~  213 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK--------GSCLAFYRMDQSMVKPTPIVDY  213 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT--------SSEEEEEEEECTTSCCEEEEEC
T ss_pred             eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC--------CCEEEEEEECCCCCceEEeecc
Confidence            899999999     98877655554421            0134589999        67888887              


Q ss_pred             -------------------CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCC
Q 047036          383 -------------------DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG  442 (634)
Q Consensus       383 -------------------~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DG  442 (634)
                                         .+.+|++||+.++.. .....+.         .    ....+.+++++||| +||+++.++
T Consensus       214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~---------~----~~~~~~~~~~spdg~~l~~~~~~~  279 (706)
T 2z3z_A          214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE---------P----KEKFLTNLSWSPDENILYVAEVNR  279 (706)
T ss_dssp             CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS---------C----TTCEEEEEEECTTSSEEEEEEECT
T ss_pred             CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC---------C----CceeEeeEEEECCCCEEEEEEeCC
Confidence                               457899999987542 2221100         0    12236788999999 699988886


Q ss_pred             -----cEEEEecccccccccccc-CCC---CCeEEEEECC--CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecC
Q 047036          443 -----KIRLYSKTSMRQAKTAFP-GLG---SPITHVDVTY--DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       443 -----tIRLWD~~t~r~akt~L~-GH~---d~ItsVdfSp--DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                           +|++||+.+++.....+. .+.   .++.+++|||  ||++|++ +.|++++||.+.   .+|+.+..+.+
T Consensus       280 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~---~~~~~~~~l~~  352 (706)
T 2z3z_A          280 AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD---TTGRLIRQVTK  352 (706)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE---TTSCEEEECCC
T ss_pred             CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE---CCCCEEEecCC
Confidence                 999999987622333332 222   2457899999  9999988 678999999864   24554444443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.41  E-value=2e-11  Score=135.77  Aligned_cols=143  Identities=8%  Similarity=0.003  Sum_probs=97.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC-----CCceEEecccCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD-----RSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~-----~~~~Vq~l~gh~s  407 (634)
                      ++|++||+.+|++.. +..|...+  ..++|+||        |+.|+++ .|++|++||+.+     +.. .+....+..
T Consensus       101 ~~i~~~d~~~~~~~~-l~~~~~~~--~~~~~Spd--------G~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~  167 (706)
T 2z3z_A          101 GGLVGFDMLARKVTY-LFDTNEET--ASLDFSPV--------GDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTE  167 (706)
T ss_dssp             TEEEEEETTTTEEEE-EECCTTCC--TTCEECTT--------SSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBT
T ss_pred             CEEEEEECCCCceEE-ccCCcccc--cCCcCCCC--------CCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCC
Confidence            589999999987655 44455544  34599999        6678884 789999999987     543 232221111


Q ss_pred             Ccccccccc-ccc-cCcceEEEEECCCC-eEEEEE---------------------------------CCCcEEEEeccc
Q 047036          408 PVLHWTQGH-QFS-RGTNFQCFASTGDG-SIVVGS---------------------------------LDGKIRLYSKTS  451 (634)
Q Consensus       408 ~V~~~~~g~-~y~-~~~~fssva~s~dG-~IASGS---------------------------------~DGtIRLWD~~t  451 (634)
                      .+.   .|. .|. ....+.+++++||| +||+++                                 .++.|++||+.+
T Consensus       168 ~~~---~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          168 TLV---YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             TEE---ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CeE---cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            100   000 000 00113678899999 799988                                 457899999987


Q ss_pred             cccccccc--cCCCCCeEEEEECCCCCEEEE-EcCC-----cEEEEEcc
Q 047036          452 MRQAKTAF--PGLGSPITHVDVTYDGKWILG-TTDT-----YLILICTL  492 (634)
Q Consensus       452 ~r~akt~L--~GH~d~ItsVdfSpDGk~LlS-S~D~-----tIrLWD~~  492 (634)
                      ++ .....  .+|...|.+++|||||++|++ +.+.     .|++||+.
T Consensus       245 ~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~  292 (706)
T 2z3z_A          245 GK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE  292 (706)
T ss_dssp             TE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT
T ss_pred             Cc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC
Confidence            64 33322  257788999999999999998 7775     89999975

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.40  E-value=2.3e-12  Score=143.77  Aligned_cols=201  Identities=8%  Similarity=0.024  Sum_probs=119.7

Q ss_pred             EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCC----CCcccccCcceeeEEeCCcceEEecCCCCC--
Q 047036          258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGS----SKIGSNSTPKKALLMRGETNMMLMSPLKDG--  328 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~----~~~g~~fsP~~~mL~~~D~~mllsss~d~~--  328 (634)
                      ...+.+ +|+.|++.+  ..|.+|....+.     ....+.++.    .....+|+|++.        +|+.++...+  
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~--------~la~~~~~~~~~   84 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQ--------FVYLESDYSKLW   84 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSS--------EEEEEEEEEECS
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCc-----EEEEEccccccccceeeEEECCCCC--------eEEEEecCceeE
Confidence            345556 777777654  467777754432     111122211    124555666654        4444332100  


Q ss_pred             -CCCCCcEEEEeCCCCcEE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEec-cc
Q 047036          329 -KPQAPGVQQLDIETGKIV--TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM-VK  404 (634)
Q Consensus       329 -~~~~~TIrlWDleTGK~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l-~g  404 (634)
                       -..+++|++||+.+|+++  ..+.   ..+  ..++||||        |+.||.++ |++|++||+.++.. ++.. .+
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~~~l~---~~~--~~~~~SPD--------G~~la~~~-~~~i~~~~~~~g~~-~~l~~~~  149 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRGNELP---RPI--QYLCWSPV--------GSKLAYVY-QNNIYLKQRPGDPP-FQITFNG  149 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCC---SSB--CCEEECSS--------TTCEEEEE-TTEEEEESSTTSCC-EECCCCC
T ss_pred             EeecceEEEEEECCCCccccceecC---ccc--ccceECCC--------CCEEEEEE-CCeEEEEeCCCCCc-EEEecCC
Confidence             001268999999999874  3332   233  34599999        56788875 78999999987654 2222 22


Q ss_pred             CCCCcccccccc-cccc----CcceEEEEECCCC-eEEEEECCC----------------------------------cE
Q 047036          405 GDSPVLHWTQGH-QFSR----GTNFQCFASTGDG-SIVVGSLDG----------------------------------KI  444 (634)
Q Consensus       405 h~s~V~~~~~g~-~y~~----~~~fssva~s~dG-~IASGS~DG----------------------------------tI  444 (634)
                      +...|.   .|+ ++..    -....+++++||| +||+++.|.                                  +|
T Consensus       150 ~~~~v~---~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          150 RENKIF---NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             BTTTEE---ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CcCCeE---cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            222111   011 0000    0112478999999 799998763                                  89


Q ss_pred             EEEecccccccc--------ccccCCCCCeEEEEECCCCCEEEE-EcCC----cEEEEE
Q 047036          445 RLYSKTSMRQAK--------TAFPGLGSPITHVDVTYDGKWILG-TTDT----YLILIC  490 (634)
Q Consensus       445 RLWD~~t~r~ak--------t~L~GH~d~ItsVdfSpDGk~LlS-S~D~----tIrLWD  490 (634)
                      ++||+.+++ .+        ..+.+|...|.+++|||||+++++ +...    .|.+||
T Consensus       227 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          227 FIIDTTYPA-YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEESSCHH-HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             EEEECCCCC-ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            999998763 32        234579999999999999987776 3222    388888

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.38  E-value=2.5e-10  Score=112.39  Aligned_cols=197  Identities=10%  Similarity=0.167  Sum_probs=129.8

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-CCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-KDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      ..|..+.+...++++++++...+     +.|++|| .+|+.+.++... ...+  .-++++|+        +.++++.+.
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~-----~~i~~~d-~~g~~~~~~~~~~~~~~--~~i~~~~~--------g~l~v~~~~  140 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPT-----HQIQIYN-QYGQFVRKFGATILQHP--RGVTVDNK--------GRIIVVECK  140 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGG-----CEEEEEC-TTSCEEEEECTTTCSCE--EEEEECTT--------SCEEEEETT
T ss_pred             cCceEEEEEcCCCeEEEEcCCCC-----CEEEEEC-CCCcEEEEecCccCCCc--eEEEEeCC--------CCEEEEECC
Confidence            45665554356777777764311     5899999 679999888543 2332  34588887        677888888


Q ss_pred             CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeE-EEEECCCcEEEEeccccccccccccC-
Q 047036          384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI-VVGSLDGKIRLYSKTSMRQAKTAFPG-  461 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I-ASGS~DGtIRLWD~~t~r~akt~L~G-  461 (634)
                      ++.|++||+..  ..+..+... .            ......+++++++|.| ++.+.++.|++||..+ + ....+.. 
T Consensus       141 ~~~i~~~~~~g--~~~~~~~~~-~------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~  203 (286)
T 1q7f_A          141 VMRVIIFDQNG--NVLHKFGCS-K------------HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGE  203 (286)
T ss_dssp             TTEEEEECTTS--CEEEEEECT-T------------TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCT
T ss_pred             CCEEEEEcCCC--CEEEEeCCC-C------------ccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccC
Confidence            99999999753  334444210 0            1113578899999965 5556789999999754 2 3444543 


Q ss_pred             -CCCCeEEEEECCCCCEEEE-EcCC-cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccc
Q 047036          462 -LGSPITHVDVTYDGKWILG-TTDT-YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGH  538 (634)
Q Consensus       462 -H~d~ItsVdfSpDGk~LlS-S~D~-tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~  538 (634)
                       +...+.+|+|+|||+.+++ ..++ .|.+||.     +|+.+..+..+...  +.|+              .+.|.+. 
T Consensus       204 g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-----~g~~~~~~~~~~~~--~~~~--------------~i~~~~~-  261 (286)
T 1q7f_A          204 GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-----DGQLISALESKVKH--AQCF--------------DVALMDD-  261 (286)
T ss_dssp             TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-----TSCEEEEEEESSCC--SCEE--------------EEEEETT-
T ss_pred             CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-----CCCEEEEEcccCCC--Ccce--------------eEEECCC-
Confidence             3467899999999998888 5565 9999994     57666666544321  0111              1333332 


Q ss_pred             ccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          539 FSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       539 Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                             |   +.+|++.++.|.+|++.
T Consensus       262 -------g---~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          262 -------G---SVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             -------T---EEEEEETTTEEEEEECS
T ss_pred             -------C---cEEEECCCCeEEEEEcc
Confidence                   3   56777789999999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.37  E-value=1.2e-10  Score=118.43  Aligned_cols=150  Identities=10%  Similarity=0.118  Sum_probs=94.9

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe---ccCC-Cc--------ceeEEEEecCCCCCCCCCCCEE-EEEe
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK---FEKD-GT--------DITMRDITNDTKSSQLDPSEST-FLGL  382 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk---gH~~-~V--------~I~vvsfsPd~K~~q~~~g~~l-aSGS  382 (634)
                      ++++|+.+...+     ++|.+||+.++..+..+.   .|.. ..        .+..++|+|+        ++.+ +++.
T Consensus       108 dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd--------g~~l~~~~~  174 (361)
T 3scy_A          108 NGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD--------GKYLLADDL  174 (361)
T ss_dssp             CSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT--------SSEEEEEET
T ss_pred             CCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC--------CCEEEEEeC
Confidence            556555554432     799999997644332221   1111 00        0133599999        5544 5555


Q ss_pred             CCCeEEEEEcCCCCc------eEE-----ecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEec
Q 047036          383 DDNRLCQWDMRDRSG------IVQ-----NMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSK  449 (634)
Q Consensus       383 ~D~tIklWD~R~~~~------~Vq-----~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~  449 (634)
                      .+++|++|++.....      +..     .+.              ........+++++|+| +|++++ .++.|++||+
T Consensus       175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  240 (361)
T 3scy_A          175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFK--------------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY  240 (361)
T ss_dssp             TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE--------------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCcccccceeeccccccee--------------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence            689999999875432      111     110              0012234678999999 577776 6999999998


Q ss_pred             ccccc----ccccccCCCCCeEEEEECCCCCEEEE-Ec--CCcEEEEEcc
Q 047036          450 TSMRQ----AKTAFPGLGSPITHVDVTYDGKWILG-TT--DTYLILICTL  492 (634)
Q Consensus       450 ~t~r~----akt~L~GH~d~ItsVdfSpDGk~LlS-S~--D~tIrLWD~~  492 (634)
                      .+++.    ....++++...+.+|+|||||++|++ ..  +++|.+|++.
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            75421    12234566677899999999999976 44  4899999974

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.37  E-value=6.9e-10  Score=114.41  Aligned_cols=187  Identities=15%  Similarity=0.159  Sum_probs=112.2

Q ss_pred             CcEEEEeCC-CCcEEEEEec----cCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEEEcC-CCCc-eEEeccc
Q 047036          333 PGVQQLDIE-TGKIVTEWKF----EKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQWDMR-DRSG-IVQNMVK  404 (634)
Q Consensus       333 ~TIrlWDle-TGK~V~~lkg----H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklWD~R-~~~~-~Vq~l~g  404 (634)
                      +++++|++. .|++...+..    +...+  ..++|+||        |+.++++. .+++|++||+. ++.. .+..+..
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~spd--------G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  188 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGI--HGMVFDPT--------ETYLYSADLTANKLWTHRKLASGEVELVGSVDA  188 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCE--EEEEECTT--------SSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcc--eEEEECCC--------CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec
Confidence            789999997 5887766553    33333  45699999        56677655 47899999997 5432 1122210


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEecc--cccc-----cccccc----CCCC------C
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKT--SMRQ-----AKTAFP----GLGS------P  465 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~--t~r~-----akt~L~----GH~d------~  465 (634)
                      .             ........++++|+| +|++++. +++|++|+..  +++.     ....++    +|..      .
T Consensus       189 ~-------------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  255 (365)
T 1jof_A          189 P-------------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             S-------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             C-------------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence            0             001235678999999 6777764 7899999754  3321     112343    2333      5


Q ss_pred             eEEEE-ECCCCCEEEE-Ec-CC-----cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          466 ITHVD-VTYDGKWILG-TT-DT-----YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       466 ItsVd-fSpDGk~LlS-S~-D~-----tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      +.+|+ |||||++|++ .. .+     +|.+|++.   .+|+....              +.+.+.+. .....+.|+|.
T Consensus       256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~---~~g~~~~~--------------~~~~~~~~-~~~~~~a~sp~  317 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLR---DCGSIEKQ--------------LFLSPTPT-SGGHSNAVSPC  317 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC---TTSCEEEE--------------EEEEECSS-CCTTCCCEEEC
T ss_pred             cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC---CCCCEEEe--------------eeeeecCC-CCcccceecCC
Confidence            89999 9999999876 33 33     89999974   13443210              00000000 01134677776


Q ss_pred             cccccccCCCCceEEEEEc-CCeEEEEeChh
Q 047036          538 HFSWVTENGKQERHLVATV-GKFSVIWDFQQ  567 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~IvtSt-g~~viiWdl~~  567 (634)
                      .|+     |  ...++++. ++.|.||++..
T Consensus       318 ~~d-----g--~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          318 PWS-----D--EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTC-----T--TEEEEECSSSCEEEEEEEET
T ss_pred             CcC-----C--CEEEEEEcCCCeEEEEEEch
Confidence            551     3  23444544 48899998863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.36  E-value=7.3e-12  Score=147.41  Aligned_cols=145  Identities=9%  Similarity=-0.005  Sum_probs=110.4

Q ss_pred             eEEe-CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC-CcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          311 LLMR-GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD-GTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       311 mL~~-~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~-~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      +.++ +|++.|+..+.       ++|++||+.+|+..+ +..|.. .+  ..++|+ |        |+.+++++.++.|.
T Consensus       301 ~~~S~pdG~~la~~~~-------~~i~~~~~~~~~~~~-~~~~~~~~~--~~~~~s-d--------g~~l~~~s~~~~l~  361 (1045)
T 1k32_A          301 EDFSPLDGDLIAFVSR-------GQAFIQDVSGTYVLK-VPEPLRIRY--VRRGGD-T--------KVAFIHGTREGDFL  361 (1045)
T ss_dssp             EEEEECGGGCEEEEET-------TEEEEECTTSSBEEE-CSCCSCEEE--EEECSS-S--------EEEEEEEETTEEEE
T ss_pred             eeecCCCCCEEEEEEc-------CEEEEEcCCCCceEE-ccCCCcceE--EeeeEc-C--------CCeEEEEECCCceE
Confidence            3344 55555555542       589999999888654 677765 43  455888 7        57899999999999


Q ss_pred             -EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036          389 -QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI  466 (634)
Q Consensus       389 -lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I  466 (634)
                       +||+..+.  +..+.+|.               ..+.+++++|+| +||+++.+++|++||+.+++ .+..+.+|..+|
T Consensus       362 ~~~d~~~~~--~~~l~~~~---------------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v  423 (1045)
T 1k32_A          362 GIYDYRTGK--AEKFEENL---------------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMI  423 (1045)
T ss_dssp             EEEETTTCC--EEECCCCC---------------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCC
T ss_pred             EEEECCCCC--ceEecCCc---------------cceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCc
Confidence             99998653  23443222               246788999999 79999999999999998864 666677899999


Q ss_pred             EEEEECCCCCEEEE-EcCC----------cEEEEEcc
Q 047036          467 THVDVTYDGKWILG-TTDT----------YLILICTL  492 (634)
Q Consensus       467 tsVdfSpDGk~LlS-S~D~----------tIrLWD~~  492 (634)
                      .+++|||||++||+ +.+.          +|+|||+.
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             cceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            99999999999998 5544          89999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.35  E-value=6.8e-12  Score=136.96  Aligned_cols=126  Identities=6%  Similarity=-0.102  Sum_probs=100.1

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC----CeEEEEEcCCCCceEEecccCCCCc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD----NRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D----~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      .+.+||+.+|++.+....+..    . .+|+||        |+.|++++.|    .+|++||+.++..  +.|.+|..  
T Consensus       133 ~~~l~d~~~g~~~~l~~~~~~----~-~~~spD--------G~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~--  195 (582)
T 3o4h_A          133 RVALYALDGGGLRELARLPGF----G-FVSDIR--------GDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEG--  195 (582)
T ss_dssp             CEEEEEEETTEEEEEEEESSC----E-EEEEEE--------TTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSC--
T ss_pred             CceEEEccCCcEEEeecCCCc----e-EEECCC--------CCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCC--
Confidence            456999999987766655541    3 489999        6789988888    8899999987653  34543322  


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCC--cEEEEeccccccccccccCCCCCeEEEE--------ECCCCCEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVD--------VTYDGKWI  478 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVd--------fSpDGk~L  478 (634)
                                   .+.+++++||| +||+++.+|  .|++||+.+++ .. .+.+|...|.+++        |||||+.+
T Consensus       196 -------------~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          196 -------------SFSSASISPGMKVTAGLETAREARLVTVDPRDGS-VE-DLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             -------------EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             -------------ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-EE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence                         24778999999 689888999  99999998864 55 7888888888888        99999777


Q ss_pred             EE-EcCCcEEEEEc
Q 047036          479 LG-TTDTYLILICT  491 (634)
Q Consensus       479 lS-S~D~tIrLWD~  491 (634)
                      ++ +.|++++||++
T Consensus       261 ~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          261 VVARREGRSAVFID  274 (582)
T ss_dssp             EEEEETTEEEEEET
T ss_pred             EEEEcCCcEEEEEE
Confidence            77 88999999995

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.32  E-value=2.9e-10  Score=117.26  Aligned_cols=150  Identities=9%  Similarity=0.085  Sum_probs=97.1

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccC-CCcceeEEEEecCCCCCCCCCCCE--EEEEe-------
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEK-DGTDITMRDITNDTKSSQLDPSES--TFLGL-------  382 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~-~~V~I~vvsfsPd~K~~q~~~g~~--laSGS-------  382 (634)
                      ++|+++|+++..       .+|++||+. +|+++....... +.+  ..++|+|+        |+.  ++++.       
T Consensus        48 spdg~~l~~~~~-------~~v~~~~~~~~g~~~~~~~~~~~g~~--~~~~~spd--------g~~l~~~~~~~~~~~~~  110 (365)
T 1jof_A           48 DHERKNIYGAAM-------KKWSSFAVKSPTEIVHEASHPIGGHP--RANDADTN--------TRAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             CTTSSEEEEEEB-------TEEEEEEEEETTEEEEEEEEECCSSG--GGGCTTSC--------CEEEEEEECSSTTCCEE
T ss_pred             CCCCCEEEEEcc-------ceEEEEEECCCCCEEEeeEeecCCCC--ccEEECCC--------CCEEEEEEecCCcceec
Confidence            444455554443       279999997 898876543211 122  23488998        453  45553       


Q ss_pred             ------CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEecc-ccc
Q 047036          383 ------DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKT-SMR  453 (634)
Q Consensus       383 ------~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~-t~r  453 (634)
                            .++++.+|++...+.+...+...           .+.......+++++|+| +|++++ .++.|++||+. +++
T Consensus       111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~  179 (365)
T 1jof_A          111 ANPFYKFAGYGNVFSVSETGKLEKNVQNY-----------EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             EEEESSSCCEEEEEEECTTCCEEEEEEEE-----------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             cceeecCCceEEEEccCCCCcCcceEeeE-----------EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence                  69999999997533333222100           00012345788999999 677765 47899999987 543


Q ss_pred             ccc--ccc--cCCCCCeEEEEECCCCCEEEE-Ec-CCcEEEEEcc
Q 047036          454 QAK--TAF--PGLGSPITHVDVTYDGKWILG-TT-DTYLILICTL  492 (634)
Q Consensus       454 ~ak--t~L--~GH~d~ItsVdfSpDGk~LlS-S~-D~tIrLWD~~  492 (634)
                       ..  ..+  +.|+..+.+++|||||++|++ +. +++|.+|+..
T Consensus       180 -~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          180 -VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             -EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             -EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence             21  223  346778999999999999987 43 7899999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.29  E-value=6.4e-11  Score=134.26  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCc-ceeE--EEEecCCCCCCCCCCCEEEEEeCCC---------eEEEEEcCCCCceEE
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGT-DITM--RDITNDTKSSQLDPSESTFLGLDDN---------RLCQWDMRDRSGIVQ  400 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V-~I~v--vsfsPd~K~~q~~~g~~laSGS~D~---------tIklWD~R~~~~~Vq  400 (634)
                      ++|++||+.+|++...+.+|...+ .+..  .+||||        |+.|+.++.++         .+.+||+.++..  .
T Consensus        36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd--------g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~--~  105 (740)
T 4a5s_A           36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--------GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL--I  105 (740)
T ss_dssp             TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTT--------SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE--C
T ss_pred             CcEEEEECCCCceEEEEechhhhhhcccccceEECCC--------CCEEEEEECCeeeEEEccceEEEEEECCCCcE--E
Confidence            689999999999999999987542 1112  578999        67899998874         456999998642  3


Q ss_pred             ecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCe-------------
Q 047036          401 NMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI-------------  466 (634)
Q Consensus       401 ~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I-------------  466 (634)
                      .+..|.               ..+..+++|||| +||.++ |+.|++||+.+++....+..|+...|             
T Consensus       106 ~l~~~~---------------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A          106 TEERIP---------------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             CSSCCC---------------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EcccCC---------------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            343222               135678999999 688885 68999999987642222344554444             


Q ss_pred             ----EEEEECCCCCEEEE-EcCCc-EEEEEcc
Q 047036          467 ----THVDVTYDGKWILG-TTDTY-LILICTL  492 (634)
Q Consensus       467 ----tsVdfSpDGk~LlS-S~D~t-IrLWD~~  492 (634)
                          .++.|||||++||. +.|.+ +.+|++.
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~  201 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence                34999999999998 66544 8888764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.28  E-value=2.3e-09  Score=108.99  Aligned_cols=154  Identities=10%  Similarity=0.115  Sum_probs=95.5

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc-------EE-----EEEe-ccCCCcceeEEEEecCCCCCCCCCCCE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK-------IV-----TEWK-FEKDGTDITMRDITNDTKSSQLDPSES  377 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK-------~V-----~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~  377 (634)
                      +.++++++.|+.+...+     ++|++|++..+.       +.     ..+. .+...+  ..++|+||        |+.
T Consensus       160 ~~~spdg~~l~~~~~~~-----~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~spd--------g~~  224 (361)
T 3scy_A          160 VRITPDGKYLLADDLGT-----DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP--RHLIFNSD--------GKF  224 (361)
T ss_dssp             EEECTTSSEEEEEETTT-----TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE--EEEEECTT--------SSE
T ss_pred             EEECCCCCEEEEEeCCC-----CEEEEEEEcCCCCcccccceeecccccceecCCCCCC--eEEEEcCC--------CCE
Confidence            44455666444433322     589999876533       21     1222 222232  34699999        566


Q ss_pred             EEEEe-CCCeEEEEEcCCCCc-eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC--CCcEEEEecc--
Q 047036          378 TFLGL-DDNRLCQWDMRDRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL--DGKIRLYSKT--  450 (634)
Q Consensus       378 laSGS-~D~tIklWD~R~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~--DGtIRLWD~~--  450 (634)
                      +++++ .+++|.+||++++.. .++.+.....            ......+++++|+| +|++++.  ++.|++|++.  
T Consensus       225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~------------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~  292 (361)
T 3scy_A          225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTV------------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET  292 (361)
T ss_dssp             EEEEETTTCEEEEEEEETTEEEEEEEEESCSS------------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT
T ss_pred             EEEEcCCCCeEEEEEecCCceEEeEEEecCCC------------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC
Confidence            76666 699999999985421 1222211000            01123688999999 6766655  4899999984  


Q ss_pred             ccc-cccccccCCCCCeEEEEECCCCCEEEE-E-cCCcEEEEEcc
Q 047036          451 SMR-QAKTAFPGLGSPITHVDVTYDGKWILG-T-TDTYLILICTL  492 (634)
Q Consensus       451 t~r-~akt~L~GH~d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~  492 (634)
                      +++ .....++. +..+.+|+|||||++|++ + .++.|.+|.+.
T Consensus       293 ~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          293 NGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            222 12334554 677899999999999988 4 47899997653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.23  E-value=3.5e-10  Score=128.23  Aligned_cols=208  Identities=9%  Similarity=0.049  Sum_probs=123.9

Q ss_pred             cEEEeee-CCCeEEEec-CeeeEEEccCCceecceeEEEecCCCC-Ccc-----cccCcceeeEEeCCcceEEecCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGSS-KIG-----SNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~~-~~g-----~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      +...+.+ +|+.+++.+ .+|.+|....+.     ....+.++.. ...     ..|+|++        +.|+.+..+..
T Consensus        18 ~~~~~~w~~dg~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Spdg--------~~l~~~~~~~~   84 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQENNILVFNAEYGN-----SSVFLENSTFDEFGHSINDYSISPDG--------QFILLEYNYVK   84 (740)
T ss_dssp             CCCCEEECSSSEEEEEETTEEEEEETTTCC-----EEEEECTTTTTTCCSCCCEEEECTTS--------SEEEEEEEEEE
T ss_pred             cccccEECCCCcEEEEcCCcEEEEECCCCc-----eEEEEechhhhhhcccccceEECCCC--------CEEEEEECCee
Confidence            3556777 888888865 578888765543     1222444321 111     2345554        44444443210


Q ss_pred             C---CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036          329 K---PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       329 ~---~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                      .   ...+.+++||+++|++. .+.+|...+  ...+||||        |+.||.+ .|+.|++||+.++....-+..++
T Consensus        85 ~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~--~~~~~SPd--------G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~  152 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKRQLI-TEERIPNNT--QWVTWSPV--------GHKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (740)
T ss_dssp             CSSSCEEEEEEEEETTTTEEC-CSSCCCTTE--EEEEECSS--------TTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             eEEEccceEEEEEECCCCcEE-EcccCCCcc--eeeEECCC--------CCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence            0   00135789999999865 477777654  45699999        5678877 47899999998765321112222


Q ss_pred             CCCcccccccc-ccccC----cceEEEEECCCC-eEEEEECCC------------------------------------c
Q 047036          406 DSPVLHWTQGH-QFSRG----TNFQCFASTGDG-SIVVGSLDG------------------------------------K  443 (634)
Q Consensus       406 ~s~V~~~~~g~-~y~~~----~~fssva~s~dG-~IASGS~DG------------------------------------t  443 (634)
                      ...+.   .|+ +++..    ....++++|||| +||.++.|.                                    +
T Consensus       153 ~~~~~---~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          153 EDIIY---NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             TTTEE---ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             cccee---cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence            21110   010 00000    112457899999 799887543                                    4


Q ss_pred             EEEEeccc---ccc-cccccc------CCCCCeEEEEECCCCCEEEE-Ec----CCcEEEEEcc
Q 047036          444 IRLYSKTS---MRQ-AKTAFP------GLGSPITHVDVTYDGKWILG-TT----DTYLILICTL  492 (634)
Q Consensus       444 IRLWD~~t---~r~-akt~L~------GH~d~ItsVdfSpDGk~LlS-S~----D~tIrLWD~~  492 (634)
                      |+|||+.+   +.. ....+.      +|...|..++|||||++|+. ..    +..|++||+.
T Consensus       230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD  293 (740)
T ss_dssp             EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred             EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence            88899877   520 111222      48888999999999998776 33    2369999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.22  E-value=3.1e-09  Score=105.44  Aligned_cols=146  Identities=8%  Similarity=-0.053  Sum_probs=96.5

Q ss_pred             eCCcc-eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036          314 RGETN-MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM  392 (634)
Q Consensus       314 ~~D~~-mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~  392 (634)
                      +++++ +++++..+      +.|++||+.+|  ++.|..+...+  ..++++|+        +.++++...++.|.+||+
T Consensus        36 d~~g~~l~~~~~~~------~~i~~~~~~~~--~~~~~~~~~~~--~~l~~~~d--------g~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           36 VPARSAVIFSDVRQ------NRTWAWSDDGQ--LSPEMHPSHHQ--NGHCLNKQ--------GHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EGGGTEEEEEEGGG------TEEEEEETTSC--EEEEESSCSSE--EEEEECTT--------CCEEEEETTTTEEEEECS
T ss_pred             eCCCCEEEEEeCCC------CEEEEEECCCC--eEEEECCCCCc--ceeeECCC--------CcEEEEecCCCeEEEEcC
Confidence            44455 45555443      68999999987  78888777654  45688988        667777777899999999


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEE-----EEC-------------CCcEEEEecccccc
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVV-----GSL-------------DGKIRLYSKTSMRQ  454 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IAS-----GS~-------------DGtIRLWD~~t~r~  454 (634)
                      .++..  ..+.....       +   .....+..++++++|.|.+     |+.             .+.|..||.. ++ 
T Consensus        98 ~~g~~--~~~~~~~~-------~---~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-  163 (296)
T 3e5z_A           98 PGGEW--ESIADSFE-------G---KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-  163 (296)
T ss_dssp             TTCCE--EEEECEET-------T---EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-
T ss_pred             CCCcE--EEEeeccC-------C---CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-
Confidence            77642  22211000       0   0112235678899996544     331             3456666654 22 


Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                       ...+.++.....+|+|+|||++|++ +.++.|.+||+.
T Consensus       164 -~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          164 -LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             -EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             -EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence             2334556667899999999999977 678999999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.18  E-value=1.6e-09  Score=110.27  Aligned_cols=133  Identities=9%  Similarity=0.021  Sum_probs=89.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE----------------------EeCCCeEEEE
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL----------------------GLDDNRLCQW  390 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS----------------------GS~D~tIklW  390 (634)
                      ++|++||+.+|+....+..|...+......++|+        +..++.                      +..+..|++|
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~d--------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSD--------CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT--------SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCC--------CCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            5899999999998888887776432111134777        455553                      2345789999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CC-eEEEEECC------CcEEEEeccccccccccccCC
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLD------GKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG-~IASGS~D------GtIRLWD~~t~r~akt~L~GH  462 (634)
                      |+.++..  ..+..+               ...+..++++| +| +||.++.+      ..|.+||..+.  ....|..+
T Consensus       174 d~~~g~~--~~l~~~---------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~  234 (388)
T 3pe7_A          174 DLKTGES--TVILQE---------------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTH  234 (388)
T ss_dssp             ETTTCCE--EEEEEE---------------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCC
T ss_pred             ECCCCce--EEeecC---------------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeC
Confidence            9987642  333221               12356788999 88 68877764      37888887664  23344444


Q ss_pred             C--CCeEEEEECCCCCEEEE-EcC--C---cEEEEEcc
Q 047036          463 G--SPITHVDVTYDGKWILG-TTD--T---YLILICTL  492 (634)
Q Consensus       463 ~--d~ItsVdfSpDGk~LlS-S~D--~---tIrLWD~~  492 (634)
                      .  ..+.+++|||||++|+. +.+  .   .|.+||+.
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred             CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence            4  36889999999998876 442  2   39999975

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.16  E-value=4.1e-09  Score=107.42  Aligned_cols=166  Identities=10%  Similarity=0.010  Sum_probs=107.4

Q ss_pred             CcEEEEeCCCCcEEEEEe-ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWK-FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|++||..+|++++.+. ++-..+  .-++|+|+        |+++++.+.+++|++||+......+..+.....+   
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p--~gia~d~~--------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---  135 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLP--HGLSIDTD--------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---  135 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSE--EEEEECTT--------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC---
T ss_pred             CcEEEEECCCCeEEeccCCCccCCc--eEEEECCC--------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC---
Confidence            479999999999998876 333332  34588988        6788899999999999986532133444211000   


Q ss_pred             cccccccccCcceEEEEECC-CCeEEE-EE-CCCcEEEEeccccccccccccCC----------CCCeEEEEECCC-CCE
Q 047036          412 WTQGHQFSRGTNFQCFASTG-DGSIVV-GS-LDGKIRLYSKTSMRQAKTAFPGL----------GSPITHVDVTYD-GKW  477 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~-dG~IAS-GS-~DGtIRLWD~~t~r~akt~L~GH----------~d~ItsVdfSpD-Gk~  477 (634)
                         +..-..-..-..+++++ +|.|++ .+ .++.|++||..+ + ....+...          -....+|+|+|+ |+.
T Consensus       136 ---g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l  210 (329)
T 3fvz_A          136 ---GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL  210 (329)
T ss_dssp             ---CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEE
T ss_pred             ---CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE
Confidence               00000111346789998 786544 44 599999999654 3 44555322          234899999999 777


Q ss_pred             EEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecC
Q 047036          478 ILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTP  522 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~P  522 (634)
                      +++ +.++.|++||..    +|+.+..+.....  ...|+.+...|
T Consensus       211 ~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~--~~~~~~~~~~p  250 (329)
T 3fvz_A          211 CVADRENGRIQCFKTD----TKEFVREIKHASF--GRNVFAISYIP  250 (329)
T ss_dssp             EEEETTTTEEEEEETT----TCCEEEEECCTTT--TTCEEEEEEET
T ss_pred             EEEECCCCEEEEEECC----CCcEEEEEecccc--CCCcceeeecC
Confidence            777 778999999964    4777776653321  12344444455

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.06  E-value=3.5e-08  Score=96.94  Aligned_cols=148  Identities=9%  Similarity=0.117  Sum_probs=102.1

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      +..+.++++++++..+      +.|++||.. |+.+..+.  ++...+  .-++++|+        ++++++.+.+++|+
T Consensus       126 i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~~~p--~~i~~~~~--------g~l~v~~~~~~~i~  188 (286)
T 1q7f_A          126 VTVDNKGRIIVVECKV------MRVIIFDQN-GNVLHKFGCSKHLEFP--NGVVVNDK--------QEIFISDNRAHCVK  188 (286)
T ss_dssp             EEECTTSCEEEEETTT------TEEEEECTT-SCEEEEEECTTTCSSE--EEEEECSS--------SEEEEEEGGGTEEE
T ss_pred             EEEeCCCCEEEEECCC------CEEEEEcCC-CCEEEEeCCCCccCCc--EEEEECCC--------CCEEEEECCCCEEE
Confidence            4445666777766543      589999964 88888885  333333  34588887        56777878899999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeE-EEEECCC-cEEEEeccccccccccccCCC--C
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI-VVGSLDG-KIRLYSKTSMRQAKTAFPGLG--S  464 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I-ASGS~DG-tIRLWD~~t~r~akt~L~GH~--d  464 (634)
                      +||+..  ..+..+..+.         +    -....+++++++|.| ++.+.++ .|++||..+ + ....+..+.  .
T Consensus       189 ~~~~~g--~~~~~~~~~g---------~----~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~  251 (286)
T 1q7f_A          189 VFNYEG--QYLRQIGGEG---------I----TNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-Q-LISALESKVKHA  251 (286)
T ss_dssp             EEETTC--CEEEEESCTT---------T----SCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-C-EEEEEEESSCCS
T ss_pred             EEcCCC--CEEEEEccCC---------c----cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-C-EEEEEcccCCCC
Confidence            999853  2344443211         0    023467899999964 5555565 999999754 3 444454433  3


Q ss_pred             CeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          465 PITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      .+.+|+|+|||+.++++.|++|++|+..
T Consensus       252 ~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             CEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             cceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            4789999999998888779999999964

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.06  E-value=3.6e-09  Score=107.67  Aligned_cols=132  Identities=13%  Similarity=0.004  Sum_probs=91.7

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      .|++||+.+|++.+...+|...+  ....|+||        ++.|+.++.++.|++||+.++... ..+..+...     
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~--~~~~~spd--------g~~l~~~~~~~~l~~~d~~~g~~~-~~~~~~~~~-----  124 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNT--FGGFLSPD--------DDALFYVKDGRNLMRVDLATLEEN-VVYQVPAEW-----  124 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCS--SSCEECTT--------SSEEEEEETTTEEEEEETTTCCEE-EEEECCTTE-----
T ss_pred             eEEEEeCCCCceEEeeeCCCCCc--cceEEcCC--------CCEEEEEeCCCeEEEEECCCCcce-eeeechhhc-----
Confidence            69999999999988887776643  12489999        678999999999999999986532 222211110     


Q ss_pred             cccccccCcceEEEEECCCCe-EEE----------------------EECCCcEEEEeccccccccccccCCCCCeEEEE
Q 047036          414 QGHQFSRGTNFQCFASTGDGS-IVV----------------------GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVD  470 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG~-IAS----------------------GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVd  470 (634)
                              ........+++|. |+.                      ++.++.|++||+.+++  ...+..+...+.+++
T Consensus       125 --------~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~  194 (388)
T 3pe7_A          125 --------VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPI  194 (388)
T ss_dssp             --------EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEE
T ss_pred             --------ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccE
Confidence                    0012234588884 442                      2345789999998763  344556777899999


Q ss_pred             ECC-CCCEEEE-EcC------CcEEEEEc
Q 047036          471 VTY-DGKWILG-TTD------TYLILICT  491 (634)
Q Consensus       471 fSp-DGk~LlS-S~D------~tIrLWD~  491 (634)
                      ||| ||++|+. +.+      ..|.++|+
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          195 YRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             EETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             ECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence            999 9999987 542      36666664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.03  E-value=3.1e-09  Score=117.19  Aligned_cols=144  Identities=10%  Similarity=0.074  Sum_probs=96.3

Q ss_pred             CCcce-EEecCCCCCCCCCCcEEEEeCC--C-CcEEEEEec-----cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-
Q 047036          315 GETNM-MLMSPLKDGKPQAPGVQQLDIE--T-GKIVTEWKF-----EKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-  384 (634)
Q Consensus       315 ~D~~m-llsss~d~~~~~~~TIrlWDle--T-GK~V~~lkg-----H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-  384 (634)
                      +|++. |+.+....     ..|++||+.  + |+ .+.+..     |...+  ...+|+||        |+.|++++.| 
T Consensus        88 PDg~~~la~~~~~~-----~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~--~~~~~spD--------g~~l~~~~~~~  151 (662)
T 3azo_A           88 PAGGPLLVFTHFGD-----QRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRW--ADPVLLPE--------RGEVWCMAEEF  151 (662)
T ss_dssp             SSSSCEEEEEBTTT-----CCEEEECTTSTTCCC-CEECSCCCCSTTCEEE--EEEEEETT--------TTEEEEEEEEE
T ss_pred             cCCCeEEEEEECCC-----CeEEEEcCCCCCCCC-CEeccCCccCCCCccc--cCcEECCC--------CCEEEEEEecc
Confidence            55555 55444322     579999987  3 54 556666     54433  45699999        6789888887 


Q ss_pred             ---------CeEEEEEcCCC-----CceEEecc-cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCC------
Q 047036          385 ---------NRLCQWDMRDR-----SGIVQNMV-KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG------  442 (634)
Q Consensus       385 ---------~tIklWD~R~~-----~~~Vq~l~-gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DG------  442 (634)
                               .+|++||+.+.     +.+ +.+. .+.               ..+.++++|||| +||.++.++      
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~---------------~~~~~~~~SpDG~~la~~~~~~~~~~~~  215 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH---------------RFVTGPRLSPDGRQAVWLAWDHPRMPWE  215 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS---------------SEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred             cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC---------------CcccCceECCCCCEEEEEECCCCCCCCC
Confidence                     69999999862     222 3342 211               123456889999 798888654      


Q ss_pred             --cEEEEecc-cc--ccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          443 --KIRLYSKT-SM--RQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       443 --tIRLWD~~-t~--r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                        +|++||+. ++  ......+.+|...+.+++|||||+++++ ..+++..||-
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHR  269 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEE
T ss_pred             CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEE
Confidence              79999987 44  1244455567889999999999996666 5567444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.00  E-value=7.4e-08  Score=100.39  Aligned_cols=185  Identities=11%  Similarity=0.138  Sum_probs=112.5

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      .++|++.|+.+...    .+++|.+||+.+++++.+ +.....    ..+.+.|++       ...+++.+.|+++.+|+
T Consensus       115 ~spdg~~l~v~n~~----~~~~v~v~d~~~~~~~~~~i~~~~~----~~v~~~p~~-------~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          115 QTTDGKFIVLQNAS----PATSIGIVDVAKGDYVEDVTAAAGC----WSVIPQPNR-------PRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             ECTTSSEEEEEEES----SSEEEEEEETTTTEEEEEEGGGTTE----EEEEECTTS-------SSEEEEEETTSSEEEEE
T ss_pred             ECCCCCEEEEECCC----CCCeEEEEECCCCcEEEEEecCCCc----ceeEEcCCC-------CeeEEEECCCCcEEEEE
Confidence            34555555544321    025899999999999998 654321    113567763       25778888999999998


Q ss_pred             cCCCCceEEe------cccCCCCccccc------------cccccccC---------------------cc-----eEEE
Q 047036          392 MRDRSGIVQN------MVKGDSPVLHWT------------QGHQFSRG---------------------TN-----FQCF  427 (634)
Q Consensus       392 ~R~~~~~Vq~------l~gh~s~V~~~~------------~g~~y~~~---------------------~~-----fssv  427 (634)
                      ....+.++..      +..+..++....            .+.-+...                     ..     ...+
T Consensus       180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          180 LGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             ECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             ECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence            8653332211      100000100000            00000000                     00     0015


Q ss_pred             EECCCC-eEEEEEC-----------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEccccc
Q 047036          428 ASTGDG-SIVVGSL-----------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSD  495 (634)
Q Consensus       428 a~s~dG-~IASGS~-----------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~  495 (634)
                      +++++| +|+++..           .++|.+||..+++ ...+++.+.  +.+|+|||||++|+++.+++|.+||+.   
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~---  333 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDIS---  333 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECS---
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECC---
Confidence            788886 6665543           3589999999874 677788776  899999999999998666999999985   


Q ss_pred             CCC--CeeeeecCCCCCCCCCceeEeecCC
Q 047036          496 KDG--KTKTGFSGRMGNKIPAPRLLKLTPL  523 (634)
Q Consensus       496 ~~G--~~~~gF~gh~~~~~p~pr~L~L~Pe  523 (634)
                       +|  +.+..+..+ +   ..|+-+.+.|.
T Consensus       334 -t~~l~~~~~i~~~-G---~~P~~~~~~p~  358 (361)
T 2oiz_A          334 -QPEPKLLRTIEGA-A---EASLQVQFHPV  358 (361)
T ss_dssp             -SSSCEEEEEETTS-C---SSEEEEEECCC
T ss_pred             -CCcceeeEEeccC-C---CCcEEEEecCC
Confidence             57  665554322 2   45777777775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.98  E-value=4.6e-08  Score=99.63  Aligned_cols=170  Identities=13%  Similarity=0.068  Sum_probs=108.7

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEe---------ccCCCcceeEEEEec-CCCCCCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWK---------FEKDGTDITMRDITN-DTKSSQLD  373 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lk---------gH~~~V~I~vvsfsP-d~K~~q~~  373 (634)
                      .|.++ ..+.++++++++..+      ++|++||.. |+  .+.++.         ++-..+  .-++|+| +       
T Consensus        92 ~p~gi-a~d~~g~l~v~d~~~------~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P--~~ia~~~~~-------  154 (329)
T 3fvz_A           92 LPHGL-SIDTDGNYWVTDVAL------HQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQP--TDVAVEPST-------  154 (329)
T ss_dssp             SEEEE-EECTTSCEEEEETTT------TEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSE--EEEEECTTT-------
T ss_pred             CceEE-EECCCCCEEEEECCC------CEEEEEeCC-CCeEEEEEecccCCCCCCccccCCC--cEEEEeCCC-------
Confidence            45543 345677777777654      689999986 55  677772         333333  3458998 5       


Q ss_pred             CCCEEEEEe-CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-Ce-EEEEECCCcEEEEecc
Q 047036          374 PSESTFLGL-DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GS-IVVGSLDGKIRLYSKT  450 (634)
Q Consensus       374 ~g~~laSGS-~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~-IASGS~DGtIRLWD~~  450 (634)
                       +.++++.+ .+++|++||+. + ..+..+........ ...++    -.....++++++ |. +++.+.++.|++||..
T Consensus       155 -g~lyv~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~-~~~~~----~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          155 -GAVFVSDGYCNSRIVQFSPS-G-KFVTQWGEESSGSS-PRPGQ----FSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             -CCEEEEECSSCCEEEEECTT-S-CEEEEECEECCSSS-CCTTE----ESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -CeEEEEeCCCCCeEEEEcCC-C-CEEEEeccCCCCCC-CCCcc----cCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence             57788886 69999999954 3 34455432111000 00000    012467899988 75 5666788999999988


Q ss_pred             ccccccccc--cCCCCCeEEEEECC------CCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          451 SMRQAKTAF--PGLGSPITHVDVTY------DGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       451 t~r~akt~L--~GH~d~ItsVdfSp------DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +++ ....+  ++++..+.+++|+|      +|+..++ +.+.+|++||..    +|+.+..|.
T Consensus       227 ~G~-~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~----~g~~~~~~~  285 (329)
T 3fvz_A          227 TKE-FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS----SGEIIDVFK  285 (329)
T ss_dssp             TCC-EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT----TCCEEEEEC
T ss_pred             CCc-EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC----CCeEEEEEc
Confidence            554 44444  57888999999999      4443334 345689999975    677766653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.95  E-value=1.7e-08  Score=102.24  Aligned_cols=146  Identities=10%  Similarity=0.018  Sum_probs=91.8

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCccee---E---------------EEEecCCCCCCCCCC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDIT---M---------------RDITNDTKSSQLDPS  375 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~---v---------------vsfsPd~K~~q~~~g  375 (634)
                      ++|++.|+..+.+      ++|++||+.+|+....+..+..... .   +               .+++|+        +
T Consensus        89 spdg~~l~~~~~~------~~l~~~d~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~spd--------g  153 (396)
T 3c5m_A           89 STDERAFFYVKNE------LNLMKVDLETLEEQVIYTVDEEWKG-YGTWVANSDCTKLVGIEILKRDWQPL--------T  153 (396)
T ss_dssp             CTTSSEEEEEETT------TEEEEEETTTCCEEEEEECCTTEEE-EEEEEECTTSSEEEEEEEEGGGCCCC--------C
T ss_pred             CCCCCEEEEEEcC------CcEEEEECCCCCcEEEEecccccCC-CCCEEEeccCCccccccccccccCCC--------C
Confidence            3344455444443      4799999999998777776654321 1   0               245666        3


Q ss_pred             CEEEEE-----eCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CC-eEEEEECC------C
Q 047036          376 ESTFLG-----LDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLD------G  442 (634)
Q Consensus       376 ~~laSG-----S~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG-~IASGS~D------G  442 (634)
                      +.++.+     ..+..|++||+.++..  ..+..+               ...+..++++| +| +||..+.+      .
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~---------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (396)
T 3c5m_A          154 SWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQD---------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDA  216 (396)
T ss_dssp             SHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEE---------------SSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred             cceeeeeeccCCCcceEEEEECCCCcE--EeeccC---------------CcccccceECCCCCCEEEEEecCCCCCCCc
Confidence            344433     4677899999987542  222211               12356778898 67 68777654      3


Q ss_pred             cEEEEeccccccccccccCC-CCCeEEEEECCCCCEEEE-EcC-----CcEEEEEcc
Q 047036          443 KIRLYSKTSMRQAKTAFPGL-GSPITHVDVTYDGKWILG-TTD-----TYLILICTL  492 (634)
Q Consensus       443 tIRLWD~~t~r~akt~L~GH-~d~ItsVdfSpDGk~LlS-S~D-----~tIrLWD~~  492 (634)
                      .|.+||+.+.+ .+...... ...|.+++|||||++|+. +.+     ++|.+||+.
T Consensus       217 ~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          217 RMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             CCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             eEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            68888976642 33333322 235889999999999887 554     459999964

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.93  E-value=1.6e-07  Score=105.87  Aligned_cols=135  Identities=11%  Similarity=-0.022  Sum_probs=92.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe----------------EEEEEcCCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR----------------LCQWDMRDRS  396 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t----------------IklWD~R~~~  396 (634)
                      .+|++||+++|+.+.....+.. +  ..++|+||        |+.|+.++.+..                |++|++.++.
T Consensus       151 ~~i~v~d~~tg~~~~~~~~~~~-~--~~~~wspD--------g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          151 VTIKFMKVDGAKELPDVLERVK-F--SCMAWTHD--------GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEC-S--CCEEECTT--------SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             EEEEEEECCCCCCCcccccCcc-c--ceEEEEeC--------CCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence            3899999999998875333332 2  33599999        678888888876                9999998754


Q ss_pred             ce-EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-----CCcEEEEeccc------cccccccccCCC
Q 047036          397 GI-VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-----DGKIRLYSKTS------MRQAKTAFPGLG  463 (634)
Q Consensus       397 ~~-Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-----DGtIRLWD~~t------~r~akt~L~GH~  463 (634)
                      .. +..+.+..             ....+..+++|||| +|+.++.     +..|++||+.+      +......|..+.
T Consensus       220 ~~~~~v~~~~~-------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~  286 (710)
T 2xdw_A          220 SEDILCAEFPD-------------EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (710)
T ss_dssp             GGCEEEECCTT-------------CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             ccceEEeccCC-------------CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence            21 11111100             01124577899999 6877765     67999999875      321345666777


Q ss_pred             CCeEEEEECCCCCEEEE-EcCC----cEEEEEcc
Q 047036          464 SPITHVDVTYDGKWILG-TTDT----YLILICTL  492 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~----tIrLWD~~  492 (634)
                      +.+.. .|+|||++|+. +.++    .|.+||+.
T Consensus       287 ~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          287 EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            77766 49999999987 6543    48888864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.93  E-value=4.2e-08  Score=99.07  Aligned_cols=149  Identities=13%  Similarity=0.094  Sum_probs=105.7

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC-CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK-DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      ++|++++.+      +.|++||.+||+++.++..|. ..+  ..+.++|+        |++++  +.++.|..||+ +++
T Consensus         6 ~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~~~~~~--~~~~~~pd--------G~ilv--s~~~~V~~~d~-~G~   66 (276)
T 3no2_A            6 HLLVGGSGW------NKIAIINKDTKEIVWEYPLEKGWEC--NSVAATKA--------GEILF--SYSKGAKMITR-DGR   66 (276)
T ss_dssp             EEEEECTTC------SEEEEEETTTTEEEEEEECCTTCCC--CEEEECTT--------SCEEE--ECBSEEEEECT-TSC
T ss_pred             cEEEeeCCC------CEEEEEECCCCeEEEEeCCCccCCC--cCeEECCC--------CCEEE--eCCCCEEEECC-CCC
Confidence            455666554      699999999999999999876 233  34588998        67777  56889999999 543


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEeccccccccccc------cCCCCCeEE
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKTSMRQAKTAF------PGLGSPITH  468 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~t~r~akt~L------~GH~d~Its  468 (634)
                       ++..+..+              ....+.++.+.++| .|++.+. ++.|..+|..+ + .+..+      .++..++..
T Consensus        67 -~~W~~~~~--------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k-~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           67 -ELWNIAAP--------------AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-E-VLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             -EEEEEECC--------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-C-EEEEEEECCSCSSGGGSCSC
T ss_pred             -EEEEEcCC--------------CCccccccEECCCCCEEEEecCCCCEEEEEeCCC-C-EEEEEeccCCCCcccccccC
Confidence             45555311              11235677888998 5666676 77888888754 3 22222      233345678


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCC
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                      +++.+||++|++ +.++.|..||.     +|+.+-.|..+
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~-----~G~~~w~~~~~  164 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAP-----NGQLLNSVKLS  164 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECT-----TSCEEEEEECS
T ss_pred             ceECCCCCEEEEecCCCEEEEECC-----CCCEEEEEECC
Confidence            899999999999 77999999995     48877777653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.85  E-value=3e-07  Score=92.01  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=95.9

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC----CeEEE
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD----NRLCQ  389 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D----~tIkl  389 (634)
                      +.++++++++..+      +.|++||+.+|++...+..+...+  ..++++|+        +.+++++..+    +.|.+
T Consensus        53 ~~~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~--~~i~~~~d--------g~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           53 DRQGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKANP--AAIKIHKD--------GRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             CTTSCEEEEETTT------CEEEEECTTTCCEEEEEECSSSSE--EEEEECTT--------SCEEEEECTTSSSCCEEEE
T ss_pred             CCCCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCCCCc--ceEEECCC--------CcEEEEeCCCCCCCceEEE
Confidence            4455555555443      689999999998776554555544  45588887        5677777666    79999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECC-------CcEEEEeccccccccccccCC
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD-------GKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D-------GtIRLWD~~t~r~akt~L~GH  462 (634)
                      ||+.++.. ...+...             .....+.+++++++|.|.+++..       +.|..||..+.+ .. .+..+
T Consensus       117 ~d~~~~~~-~~~~~~~-------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~  180 (333)
T 2dg1_A          117 ATENGDNL-QDIIEDL-------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VT-PIIQN  180 (333)
T ss_dssp             ECTTSCSC-EEEECSS-------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EE-EEEEE
T ss_pred             EeCCCCEE-EEEEccC-------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-EE-EeecC
Confidence            99987542 1122100             01234678899999976666552       556666655432 22 23233


Q ss_pred             CCCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          463 GSPITHVDVTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      ...+.+|+|+|||++|. + +.++.|.+||+.
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            44689999999999765 4 457899999974

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.84  E-value=1e-06  Score=87.22  Aligned_cols=156  Identities=10%  Similarity=0.017  Sum_probs=99.4

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCc--ceeEEEEecCCCCCCCCCCCEEEE----Ee--
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGT--DITMRDITNDTKSSQLDPSESTFL----GL--  382 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V--~I~vvsfsPd~K~~q~~~g~~laS----GS--  382 (634)
                      +..+.+++++++...+      +.|++||+.+|++......+....  .+.-++++|+        |.+.++    |+  
T Consensus        74 l~~~~dg~l~v~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--------G~l~vtd~~~g~~~  139 (296)
T 3e5z_A           74 HCLNKQGHLIACSHGL------RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD--------GSLWFSDPTYGIDK  139 (296)
T ss_dssp             EEECTTCCEEEEETTT------TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT--------SCEEEEECSHHHHC
T ss_pred             eeECCCCcEEEEecCC------CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC--------CCEEEECCcccccc
Confidence            4445566666665543      589999999998765443322110  0123478887        677777    43  


Q ss_pred             -----------CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc
Q 047036          383 -----------DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT  450 (634)
Q Consensus       383 -----------~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~  450 (634)
                                 ..+.|..+|+. + . +..+..+.               .....++++++| .|++.+.++.|++||+.
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~---------------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          140 PEEGYGGEMELPGRWVFRLAPD-G-T-LSAPIRDR---------------VKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             GGGSSCCCCCSSSCEEEEECTT-S-C-EEEEECCC---------------SSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             ccccccccccCCCcEEEEECCC-C-C-EEEeecCC---------------CCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence                       13578888776 2 2 22332111               123578999999 56777888999999975


Q ss_pred             -ccccc---cccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeec
Q 047036          451 -SMRQA---KTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       451 -t~r~a---kt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                       .++ .   ...+..+...+.+|+++++|+.++++ ++.|.+||.     +|+.+..+.
T Consensus       202 ~~g~-~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~-----~g~~~~~~~  253 (296)
T 3e5z_A          202 ARGE-TEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTP-----DGDELGRVL  253 (296)
T ss_dssp             SSSC-EEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECT-----TSCEEEEEE
T ss_pred             CCCc-CcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECC-----CCCEEEEEE
Confidence             222 2   22334455667899999999977777 899999994     466555444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.83  E-value=1.6e-07  Score=105.76  Aligned_cols=132  Identities=14%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             cEEEEeCCCCcEEEEEe------ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-----eEEEEEcCCCCceEEec
Q 047036          334 GVQQLDIETGKIVTEWK------FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-----RLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       334 TIrlWDleTGK~V~~lk------gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-----tIklWD~R~~~~~Vq~l  402 (634)
                      .|++.+...|+...-+.      +|...  +...+||||        |+.||.+++++     +|++||+.++.. ++..
T Consensus        99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~--~~~~~~SPD--------g~~la~~~~~~G~~~~~i~v~d~~tg~~-~~~~  167 (710)
T 2xdw_A           99 VLYVQDSLEGEARVFLDPNILSDDGTVA--LRGYAFSED--------GEYFAYGLSASGSDWVTIKFMKVDGAKE-LPDV  167 (710)
T ss_dssp             EEEEESSTTSCCEEEECGGGGCTTSCEE--EEEEEECTT--------SSEEEEEEEETTCSCEEEEEEETTTTEE-EEEE
T ss_pred             EEEEEcCCCCCcEEEECHHHhccCCCEE--EEEEEECCC--------CCEEEEEEcCCCCceEEEEEEECCCCCC-Cccc
Confidence            46666665554322222      23222  345699999        56787766654     999999988643 2221


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCc----------------EEEEeccccccc-cc--cccCC
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGK----------------IRLYSKTSMRQA-KT--AFPGL  462 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGt----------------IRLWD~~t~r~a-kt--~L~GH  462 (634)
                      .                ....+.+++++||| .|+.++.++.                |++|++.+.+.. ..  ..+.|
T Consensus       168 ~----------------~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~  231 (710)
T 2xdw_A          168 L----------------ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE  231 (710)
T ss_dssp             E----------------EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             c----------------cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC
Confidence            1                01124567899999 7999998877                999998775311 12  22345


Q ss_pred             CCCeEEEEECCCCCEEEE-Ec-----CCcEEEEEcc
Q 047036          463 GSPITHVDVTYDGKWILG-TT-----DTYLILICTL  492 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS-S~-----D~tIrLWD~~  492 (634)
                      ...+.+++|||||++|+. +.     ++.|.+||+.
T Consensus       232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence            667899999999999997 54     5789999975

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.82  E-value=1.3e-06  Score=90.87  Aligned_cols=58  Identities=14%  Similarity=0.063  Sum_probs=44.0

Q ss_pred             CcEEEEeCCCCcEEEEEecc------CCCcceeEEEEecCCCCCCCCCCCEEEEEeC--CCeEEEEEcCCCCceEEe
Q 047036          333 PGVQQLDIETGKIVTEWKFE------KDGTDITMRDITNDTKSSQLDPSESTFLGLD--DNRLCQWDMRDRSGIVQN  401 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH------~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~--D~tIklWD~R~~~~~Vq~  401 (634)
                      ++|.+||+.+++++.++..+      ....  .-++|+||        |+.|+++..  +++|.+||+++++ ++..
T Consensus        81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p--~~i~~spd--------g~~l~v~n~~~~~~v~v~d~~~~~-~~~~  146 (361)
T 2oiz_A           81 DVVEVWDADKLTFEKEISLPPKRVQGLNYD--GLFRQTTD--------GKFIVLQNASPATSIGIVDVAKGD-YVED  146 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEECTTBCCBCCCG--GGEEECTT--------SSEEEEEEESSSEEEEEEETTTTE-EEEE
T ss_pred             CEEEEEECcCCcEEEEEEcCccccccCCCc--ceEEECCC--------CCEEEEECCCCCCeEEEEECCCCc-EEEE
Confidence            58999999999999998753      1222  23489999        567887763  6899999999864 4555

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.82  E-value=2.6e-08  Score=109.78  Aligned_cols=131  Identities=11%  Similarity=-0.030  Sum_probs=88.9

Q ss_pred             CcEEEEeCCC------CcEEEEEe-ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC--------CeEEEEEcC-CCC
Q 047036          333 PGVQQLDIET------GKIVTEWK-FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD--------NRLCQWDMR-DRS  396 (634)
Q Consensus       333 ~TIrlWDleT------GK~V~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D--------~tIklWD~R-~~~  396 (634)
                      .+|++||+.+      |++ +.+. .|...+  ...+||||        |+.|+.++.+        ..|++||+. ++.
T Consensus       161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~SpD--------G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFV--TGPRLSPD--------GRQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGS-EESSCSCSSEE--CCCEECTT--------SSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             eEEEEEECCCCccccCCce-eEEEecCCCcc--cCceECCC--------CCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence            4799999998      665 4454 444443  34589999        6788877755        489999998 441


Q ss_pred             --ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCC--cEEEEeccccccccccccCCCCC------
Q 047036          397 --GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG--KIRLYSKTSMRQAKTAFPGLGSP------  465 (634)
Q Consensus       397 --~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DG--tIRLWD~~t~r~akt~L~GH~d~------  465 (634)
                        ...+...+|               ...+.+++++||| .+++++.+|  .|.+||+.+++ .+..++++...      
T Consensus       230 ~~~~~~l~~~~---------------~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~  293 (662)
T 3azo_A          230 FADTRTLLGGP---------------EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWT  293 (662)
T ss_dssp             EEEEEEEEEET---------------TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCS
T ss_pred             ccccEEeCCCC---------------CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCcccc
Confidence              222222111               1235678899999 567778888  66666765543 44555555443      


Q ss_pred             --eEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          466 --ITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       466 --ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                        +.+++|+|+|+++++ +. ++++||.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          294 PGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             ccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence              678999999999998 56 99999954

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.76  E-value=2.9e-08  Score=100.53  Aligned_cols=142  Identities=12%  Similarity=-0.016  Sum_probs=88.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ..|++||+.+|+..+...++....  ....|+||        |+.|+.++.++.|++||+.++.. ......+..    |
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~--~~~~~spd--------g~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~----~  124 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNT--FGGFISTD--------ERAFFYVKNELNLMKVDLETLEE-QVIYTVDEE----W  124 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCT--TTCEECTT--------SSEEEEEETTTEEEEEETTTCCE-EEEEECCTT----E
T ss_pred             ceEEEEECCCCcEEEeecCCCCcc--ccceECCC--------CCEEEEEEcCCcEEEEECCCCCc-EEEEecccc----c
Confidence            479999999988655444443221  22478999        67899999999999999987642 222221221    1


Q ss_pred             c-cccccc--cCcceE-----EEEECCCC-eEEEE-----ECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCE
Q 047036          413 T-QGHQFS--RGTNFQ-----CFASTGDG-SIVVG-----SLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKW  477 (634)
Q Consensus       413 ~-~g~~y~--~~~~fs-----sva~s~dG-~IASG-----S~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~  477 (634)
                      . .++...  ......     .++++|+| .|+.+     ..++.|++||+.+++ .. .+..+...+..+.||| ||++
T Consensus       125 ~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-~~-~~~~~~~~~~~~~~sp~dg~~  202 (396)
T 3c5m_A          125 KGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-LE-VIHQDTAWLGHPIYRPFDDST  202 (396)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-EE-EEEEESSCEEEEEEETTEEEE
T ss_pred             CCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-EE-eeccCCcccccceECCCCCCE
Confidence            1 011000  000000     02457777 45544     467899999988753 33 3345677899999999 8998


Q ss_pred             EEE-EcC------CcEEEEEc
Q 047036          478 ILG-TTD------TYLILICT  491 (634)
Q Consensus       478 LlS-S~D------~tIrLWD~  491 (634)
                      |+. +.+      ..|.+||+
T Consensus       203 l~~~~~~~~~~~~~~l~~~d~  223 (396)
T 3c5m_A          203 VGFCHEGPHDLVDARMWLVNE  223 (396)
T ss_dssp             EEEEECSCSSSCSCCCEEEET
T ss_pred             EEEEecCCCCCCCceEEEEEC
Confidence            887 543      35777775

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.76  E-value=7.1e-07  Score=100.41  Aligned_cols=194  Identities=14%  Similarity=0.103  Sum_probs=112.1

Q ss_pred             EEEeee-CCCeEEE-----ec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036          258 SLTLGA-LDNSFLV-----SD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDG  328 (634)
Q Consensus       258 ~LavG~-~D~sfvv-----~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~  328 (634)
                      ...+.+ +|+++++     .|   ..|.||....+...-..   .+.+.. ..+..|+|++        +.|+.++.+..
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~-~~~~~wspDg--------~~l~~~~~d~~  190 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGK-YATPKWTPDS--------KGFYYEWLPTD  190 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCT-TCCCEECTTS--------SEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCccc-ccceEEecCC--------CEEEEEEecCC
Confidence            444555 8998888     56   37888886553311000   111110 0355666655        44444444320


Q ss_pred             C-------CCCCcEEEEeCCCCc----EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC----eEEEEEcC
Q 047036          329 K-------PQAPGVQQLDIETGK----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN----RLCQWDMR  393 (634)
Q Consensus       329 ~-------~~~~TIrlWDleTGK----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~----tIklWD~R  393 (634)
                      .       .....|++|++.+|+    ++.+...|...+  ..+.|+||        |+.|+.++.++    .|++||..
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~--~~~~~SpD--------G~~l~~~~~~~~~~~~l~~~~~~  260 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF--LQSDLSRD--------GKYLFVYILRGWSENDVYWKRPG  260 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE--EEEEECTT--------SCCEEEEEEETTTEEEEEEECTT
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE--EEEEECCC--------CCEEEEEEeCCCCceEEEEEcCC
Confidence            0       011349999999987    555555565444  34589999        55677766665    77777765


Q ss_pred             CCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEEC----CCcEEEEecccccc--ccccccCC-CCCe
Q 047036          394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL----DGKIRLYSKTSMRQ--AKTAFPGL-GSPI  466 (634)
Q Consensus       394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~----DGtIRLWD~~t~r~--akt~L~GH-~d~I  466 (634)
                      .+.  ++.|..+...              .... .+++++ |+..+.    ++.|.+||+.++..  ....++.+ ...|
T Consensus       261 ~~~--~~~l~~~~~~--------------~~~~-~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l  322 (695)
T 2bkl_A          261 EKD--FRLLVKGVGA--------------KYEV-HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL  322 (695)
T ss_dssp             CSS--CEEEEECSSC--------------CEEE-EEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred             CCc--eEEeecCCCc--------------eEEE-EecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence            432  2334322211              1222 334444 555443    68999999876421  23445544 5568


Q ss_pred             EEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          467 THVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       467 tsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .+++++ +++.+++ ..|+..+||.+.
T Consensus       323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          323 LSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            899999 7777777 889999999754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.76  E-value=1.6e-07  Score=100.88  Aligned_cols=172  Identities=14%  Similarity=0.071  Sum_probs=116.6

Q ss_pred             CCcEEEeeeCCCeEEEe-cCeeeEEEccCCc--e-----ecce-eEEEecCCCCCcccccCcceeeEEeCCcceEEecCC
Q 047036          255 GVQSLTLGALDNSFLVS-DLGLQVYRNYNRG--I-----HNKG-VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPL  325 (634)
Q Consensus       255 ~~~~LavG~~D~sfvv~-G~~igV~k~~~~g--l-----~~~~-~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~  325 (634)
                      ..+.||++..-+-+++. ++++.||+...-.  +     .+.. ....+          -. ...+-+  |++.|+.+ .
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~l----------p~-V~~l~f--d~~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI----------PD-VIFVCF--HGDQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC----------TT-EEEEEE--ETTEEEEE-E
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeC----------CC-eeEEEE--CCCEEEEE-c
Confidence            35788888855555554 4788888853211  0     0111 11111          11 223333  66777776 3


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036          326 KDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       326 d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh  405 (634)
                      +      +.|++||+.+-........|...|    .++.|-        ...+++++.||+|.+||+..+.. .+ +   
T Consensus       105 ~------~~l~v~dv~sl~~~~~~~~~~~~v----~~i~~~--------~p~~av~~~dG~L~v~dl~~~~~-~~-~---  161 (388)
T 1xip_A          105 R------NALYSLDLEELSEFRTVTSFEKPV----FQLKNV--------NNTLVILNSVNDLSALDLRTKST-KQ-L---  161 (388)
T ss_dssp             S------SEEEEEESSSTTCEEEEEECSSCE----EEEEEC--------SSEEEEEETTSEEEEEETTTCCE-EE-E---
T ss_pred             C------CcEEEEEchhhhccCccceeecce----eeEEec--------CCCEEEEECCCCEEEEEccCCcc-cc-c---
Confidence            2      689999998777666777787654    233332        12499999999999999986543 22 1   


Q ss_pred             CCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccc--cccc------c---CCCCCeEEEEECCC
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQA--KTAF------P---GLGSPITHVDVTYD  474 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~a--kt~L------~---GH~d~ItsVdfSpD  474 (634)
                                     ...++|+|++|+| +++|..||+|++|+..+.. .  +.+|      .   +|...|.+|.+.++
T Consensus       162 ---------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~-~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          162 ---------------AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             ---------------EESEEEEEECSSE-EEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             ---------------cCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcc-ccccceecCCcccccccCCCeeEEEEEEecC
Confidence                           1257999999999 8899999999999987643 3  4455      2   47889999999999


Q ss_pred             CCEEEE
Q 047036          475 GKWILG  480 (634)
Q Consensus       475 Gk~LlS  480 (634)
                      ++||++
T Consensus       225 ~~flv~  230 (388)
T 1xip_A          225 QDFLAV  230 (388)
T ss_dssp             SEEEEE
T ss_pred             CeEEEE
Confidence            999998

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.75  E-value=1.1e-07  Score=106.89  Aligned_cols=131  Identities=14%  Similarity=0.038  Sum_probs=86.9

Q ss_pred             cEEEEeCCCCcEEEEEe------ccCCCcceeEEEEecCCCCCCCCCCCEEE-----EEeCCCeEEEEEcCCCCceEEec
Q 047036          334 GVQQLDIETGKIVTEWK------FEKDGTDITMRDITNDTKSSQLDPSESTF-----LGLDDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       334 TIrlWDleTGK~V~~lk------gH~~~V~I~vvsfsPd~K~~q~~~g~~la-----SGS~D~tIklWD~R~~~~~Vq~l  402 (634)
                      .|++.+...|+...-+.      +|...  +...+||||        |+.||     +|+.+.+|++||+.++.. ++  
T Consensus        95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~--~~~~~~SPD--------G~~la~~~~~~G~~~~~i~v~dl~tg~~-~~--  161 (695)
T 2bkl_A           95 ILYWRQGESGQEKVLLDPNGWSKDGTVS--LGTWAVSWD--------GKKVAFAQKPNAADEAVLHVIDVDSGEW-SK--  161 (695)
T ss_dssp             EEEEEESTTSCCEEEECGGGSSSSSCEE--EEEEEECTT--------SSEEEEEEEETTCSCCEEEEEETTTCCB-CS--
T ss_pred             EEEEEcCCCCCcEEEEchHHhccCCCEE--EEEEEECCC--------CCEEEEEECCCCCceEEEEEEECCCCCC-cC--
Confidence            46777766555333332      34422  355699999        56777     556678999999998653 10  


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCc-------------EEEEecccccc---ccccccCCCCC
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGK-------------IRLYSKTSMRQ---AKTAFPGLGSP  465 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGt-------------IRLWD~~t~r~---akt~L~GH~d~  465 (634)
                      ..+.             ....+.+++++||| .|+.++.|..             |++|++.++..   .....++|...
T Consensus       162 ~~~~-------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~  228 (695)
T 2bkl_A          162 VDVI-------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT  228 (695)
T ss_dssp             SCCB-------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred             Cccc-------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence            1111             11123567899999 7999999887             99999877531   22234456678


Q ss_pred             eEEEEECCCCCEEEE-EcCC----cEEEEE
Q 047036          466 ITHVDVTYDGKWILG-TTDT----YLILIC  490 (634)
Q Consensus       466 ItsVdfSpDGk~LlS-S~D~----tIrLWD  490 (634)
                      +.++.|||||++|+. +.++    .|.+|+
T Consensus       229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          229 FLQSDLSRDGKYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEeCCCCceEEEEEc
Confidence            999999999999987 6555    455554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.70  E-value=1.2e-06  Score=98.14  Aligned_cols=93  Identities=11%  Similarity=0.138  Sum_probs=69.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC--CCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR--DRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R--~~~~~Vq~l~gh~s~V~  410 (634)
                      ++|.++|+.|++++.++..... +  ..+.|+||        ++.+++++.|++|.+||+.  +. .++..+..      
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~~-p--~~v~~SpD--------Gr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~------  238 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGYA-V--HISRLSAS--------GRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKI------  238 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSSC-E--EEEEECTT--------SCEEEEEETTSEEEEEETTSSSC-CEEEEEEC------
T ss_pred             CeEEEEECCCCeEEEEEeCCCC-c--cceEECCC--------CCEEEEEcCCCeEEEEECCCCCC-cEeEEEec------
Confidence            6999999999999999986543 2  35589999        6789999999999999996  44 34444431      


Q ss_pred             ccccccccccCcceEEEEEC----CCC-eEEEEE-CCCcEEEEeccccc
Q 047036          411 HWTQGHQFSRGTNFQCFAST----GDG-SIVVGS-LDGKIRLYSKTSMR  453 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s----~dG-~IASGS-~DGtIRLWD~~t~r  453 (634)
                                ...-..++++    |+| ++++++ .+++|.++|..+++
T Consensus       239 ----------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          239 ----------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             ----------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ----------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence                      1122467888    588 666554 55999999987753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.69  E-value=6.9e-07  Score=89.41  Aligned_cols=120  Identities=12%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++++.|   .++.+..+.+|...+  ..++|+|+        +.+++++..++.|++||+.++.. ...+..        
T Consensus        27 ~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~--------g~l~~~~~~~~~i~~~d~~~~~~-~~~~~~--------   84 (333)
T 2dg1_A           27 SELQTI---TAEPWLEISKKGLQL--EGLNFDRQ--------GQLFLLDVFEGNIFKINPETKEI-KRPFVS--------   84 (333)
T ss_dssp             GGSCEE---ECEEEEEEESSCCCE--EEEEECTT--------SCEEEEETTTCEEEEECTTTCCE-EEEEEC--------
T ss_pred             ccCccc---ccceeEEEeccCccc--cCcEECCC--------CCEEEEECCCCEEEEEeCCCCcE-EEEeeC--------
Confidence            579999   577888888877654  34588887        67778899999999999987542 221111        


Q ss_pred             ccccccccCcceEEEEECCCCeEEEE-ECC----CcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEEEc
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVG-SLD----GKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILGTT  482 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASG-S~D----GtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlSS~  482 (634)
                             ....+.+++++++|.|.++ ..+    +.|.+||..+.+ ....+.  .+...+.+|+++|||+.++++.
T Consensus        85 -------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A           85 -------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             -------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred             -------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEec
Confidence                   1234678899999965544 444    589999987753 332232  3567899999999999888854

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.68  E-value=9.2e-05  Score=71.64  Aligned_cols=146  Identities=12%  Similarity=0.096  Sum_probs=95.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      +..+.+++++++...+      +.|++||.. |+. ..+..  +...+  ..+++.|+        +.+.++...++.|.
T Consensus        62 i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~-~~~~~~~~~~~~--~~i~~~~~--------g~l~v~~~~~~~i~  123 (299)
T 2z2n_A           62 LTISSDGEVWFTENAA------NKIGRITKK-GII-KEYTLPNPDSAP--YGITEGPN--------GDIWFTEMNGNRIG  123 (299)
T ss_dssp             EEECTTSCEEEEETTT------TEEEEECTT-SCE-EEEECSSTTCCE--EEEEECTT--------SCEEEEETTTTEEE
T ss_pred             EEECCCCCEEEeCCCC------CeEEEECCC-CcE-EEEeCCCcCCCc--eeeEECCC--------CCEEEEecCCceEE
Confidence            4445666766665543      579999987 664 44442  22222  34577776        56777777789999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEeccccccccccccCCCCCeE
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~It  467 (634)
                      +||+ .+..  ..+...             .......+++++++|.|.++. ..+.|..||. +++.....++.+...+.
T Consensus       124 ~~d~-~g~~--~~~~~~-------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  186 (299)
T 2z2n_A          124 RITD-DGKI--REYELP-------------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPV  186 (299)
T ss_dssp             EECT-TCCE--EEEECS-------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             EECC-CCCE--EEecCC-------------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcce
Confidence            9999 4332  222100             011235788899999765554 5689999998 54322223555567789


Q ss_pred             EEEECCCCCEEEEE-cCCcEEEEEc
Q 047036          468 HVDVTYDGKWILGT-TDTYLILICT  491 (634)
Q Consensus       468 sVdfSpDGk~LlSS-~D~tIrLWD~  491 (634)
                      +|+++++|+..+++ .++.|.+||.
T Consensus       187 ~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          187 GITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT
T ss_pred             eEEECCCCCEEEEccCCceEEEECC
Confidence            99999999987774 5788999985

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.68  E-value=4e-06  Score=85.68  Aligned_cols=202  Identities=9%  Similarity=0.008  Sum_probs=121.9

Q ss_pred             EEEeeeCCCeEEEe--cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          258 SLTLGALDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       258 ~LavG~~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      .||+...++-|+..  +..|.+|......+     ...+.... ..+..-.|.++.+  .++.+++++...     +++|
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-----~~~i~~g~-~~~~~~~p~~i~~--~~~~lyv~~~~~-----~~~v  154 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEI-----TGYIECPD-MDMESGSTEQMVQ--YGKYVYVNCWSY-----QNRI  154 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEE-----EEEEECTT-CCTTTCBCCCEEE--ETTEEEEEECTT-----CCEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeE-----EEEEEcCC-ccccCCCcceEEE--ECCEEEEEcCCC-----CCEE
Confidence            45543334455665  46787777544321     11222110 0122225666544  344555554321     2689


Q ss_pred             EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC----------CeEEEEEcCCCCceEEecccC
Q 047036          336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD----------NRLCQWDMRDRSGIVQNMVKG  405 (634)
Q Consensus       336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D----------~tIklWD~R~~~~~Vq~l~gh  405 (634)
                      .++|++++++++++......   .-+.++|+        |.+.+++..+          ++|.+||++++. ++..+.-.
T Consensus       155 ~viD~~t~~~~~~i~~g~~p---~~i~~~~d--------G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~  222 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQP---TSLVMDKY--------NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFK  222 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCB---CCCEECTT--------SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECC
T ss_pred             EEEECCCCeEEEEEEcCCCc---cceEEcCC--------CCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecC
Confidence            99999999999998765432   23478887        5556665554          799999998753 34443200


Q ss_pred             CCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc-cccCCCCCeEEEEECCCCCEE-EEE-
Q 047036          406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPITHVDVTYDGKWI-LGT-  481 (634)
Q Consensus       406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~ItsVdfSpDGk~L-lSS-  481 (634)
                                    .......++++|+| +|.++..  +|.+||..+++.... .++.++....+|+++|++..| ++. 
T Consensus       223 --------------~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~  286 (328)
T 3dsm_A          223 --------------LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADA  286 (328)
T ss_dssp             --------------TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEEC
T ss_pred             --------------CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcc
Confidence                          01124678999977 6766654  999999877532112 233335678999999955444 444 


Q ss_pred             ----cCCcEEEEEcccccCCCCeeeeec
Q 047036          482 ----TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       482 ----~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                          .+++|.+||.     +|+.+..|.
T Consensus       287 ~~y~~~~~V~v~d~-----~g~~~~~i~  309 (328)
T 3dsm_A          287 IDYQQQGIVYRYSP-----QGKLIDEFY  309 (328)
T ss_dssp             TTSSSEEEEEEECT-----TCCEEEEEE
T ss_pred             cccccCCEEEEECC-----CCCEEEEEE
Confidence                3688999995     477777665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.68  E-value=5.8e-07  Score=91.94  Aligned_cols=134  Identities=13%  Similarity=0.003  Sum_probs=89.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|.+||+.||+++.++.+... .  .-++++|+        + .++.+. .+++|.+||+.+.. ++..+......   
T Consensus        64 ~~v~viD~~t~~~~~~i~~~~~-p--~~i~~~~~--------g-~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~~~---  127 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITGFTS-P--RYIHFLSD--------E-KAYVTQIWDYRIFIINPKTYE-ITGYIECPDMD---  127 (328)
T ss_dssp             TEEEEEETTTCCEEEEEECCSS-E--EEEEEEET--------T-EEEEEEBSCSEEEEEETTTTE-EEEEEECTTCC---
T ss_pred             CEEEEEECcccEEEEEcCCCCC-C--cEEEEeCC--------C-eEEEEECCCCeEEEEECCCCe-EEEEEEcCCcc---
Confidence            6899999999999999975443 2  34588887        4 455554 89999999998754 34444211100   


Q ss_pred             cccccccccCcceEEEEECCCCeEEEEE--CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc-C-----
Q 047036          412 WTQGHQFSRGTNFQCFASTGDGSIVVGS--LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT-D-----  483 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG~IASGS--~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~-D-----  483 (634)
                         ++    ......+++ .+++|.++.  .+++|.+||+.+++ ....++. +....+|.++|||++++++. +     
T Consensus       128 ---~~----~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~  197 (328)
T 3dsm_A          128 ---ME----SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSP  197 (328)
T ss_dssp             ---TT----TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred             ---cc----CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCc
Confidence               00    001123455 566766665  48999999998764 4445543 34457899999999877743 3     


Q ss_pred             -----CcEEEEEcc
Q 047036          484 -----TYLILICTL  492 (634)
Q Consensus       484 -----~tIrLWD~~  492 (634)
                           +.|.+||..
T Consensus       198 ~~~~~~~v~~id~~  211 (328)
T 3dsm_A          198 YGYEAPSLYRIDAE  211 (328)
T ss_dssp             SCBCCCEEEEEETT
T ss_pred             cccCCceEEEEECC
Confidence                 689999974

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.65  E-value=2.3e-06  Score=86.30  Aligned_cols=147  Identities=7%  Similarity=0.075  Sum_probs=102.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      +.|+.||. +|+++.+++.+... .+....+.|+        |+.+++.+. +++|..+|+. + +.+..+.-... +. 
T Consensus        56 ~~V~~~d~-~G~~~W~~~~~~~~-~~~~~~~~~d--------G~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~-~~-  121 (276)
T 3no2_A           56 KGAKMITR-DGRELWNIAAPAGC-EMQTARILPD--------GNALVAWCGHPSTILEVNMK-G-EVLSKTEFETG-IE-  121 (276)
T ss_dssp             SEEEEECT-TSCEEEEEECCTTC-EEEEEEECTT--------SCEEEEEESTTEEEEEECTT-S-CEEEEEEECCS-CS-
T ss_pred             CCEEEECC-CCCEEEEEcCCCCc-cccccEECCC--------CCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCC-CC-
Confidence            57999999 89999999986421 2345578888        678888887 8889888873 3 34444421000 00 


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                        ..|.     ....++..++| +|++.+.++.|.+||.. ++ .+-.+... ..+.++.+.++|+.|++ +.+++|..+
T Consensus       122 --~~~~-----~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~  191 (276)
T 3no2_A          122 --RPHA-----QFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQL  191 (276)
T ss_dssp             --SGGG-----SCSCCEECTTSCEEEEETTTTEEEEECTT-SC-EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEE
T ss_pred             --cccc-----cccCceECCCCCEEEEecCCCEEEEECCC-CC-EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEE
Confidence              0011     12233567787 78889999999999988 54 55555543 45678999999999999 566789999


Q ss_pred             EcccccCCCCeeeeecCC
Q 047036          490 CTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       490 D~~~~~~~G~~~~gF~gh  507 (634)
                      |..    +|+.+-.|..+
T Consensus       192 d~~----tG~~~w~~~~~  205 (276)
T 3no2_A          192 NLE----SNRIVRRVNAN  205 (276)
T ss_dssp             CTT----TCCEEEEEEGG
T ss_pred             eCc----CCcEEEEecCC
Confidence            964    58888777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.61  E-value=1.1e-05  Score=80.67  Aligned_cols=152  Identities=11%  Similarity=0.106  Sum_probs=91.1

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |.+..++..++.+++++...      ++|+.||+.+|+. ..+... ..+  ..++++|+        +.++ .+. ++.
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~------~~i~~~d~~~~~~-~~~~~~-~~~--~~i~~~~d--------G~l~-v~~-~~~   74 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPA------KKVCRWDSFTKQV-QRVTMD-APV--SSVALRQS--------GGYV-ATI-GTK   74 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTT------TEEEEEETTTCCE-EEEECS-SCE--EEEEEBTT--------SSEE-EEE-TTE
T ss_pred             ccCCeEECCCCEEEEEECCC------CEEEEEECCCCcE-EEEeCC-Cce--EEEEECCC--------CCEE-EEE-CCe
Confidence            44554444445556665543      6899999998876 445433 333  45588887        5544 444 679


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEEC----------CCcEEEEecccccccc
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL----------DGKIRLYSKTSMRQAK  456 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~----------DGtIRLWD~~t~r~ak  456 (634)
                      |.+||+.++.  ++.+.....       +   .....+..++++++|.|..++.          ....+||-+.......
T Consensus        75 l~~~d~~~g~--~~~~~~~~~-------~---~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~  142 (297)
T 3g4e_A           75 FCALNWKEQS--AVVLATVDN-------D---KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK  142 (297)
T ss_dssp             EEEEETTTTE--EEEEEECCT-------T---CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred             EEEEECCCCc--EEEEEecCC-------C---CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence            9999998653  233321100       0   0123467788999997666542          1334555443211122


Q ss_pred             ccccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          457 TAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      . +..+....++|+|+|||++|. + +.++.|.+||+
T Consensus       143 ~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          143 K-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             E-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             E-EeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence            2 223334568999999999774 4 66889999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.60  E-value=2.5e-06  Score=82.36  Aligned_cols=149  Identities=11%  Similarity=0.002  Sum_probs=97.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW  390 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW  390 (634)
                      +..+.++++++++..+      +.|++||..++........+...+  .-++++|+        +.+.++...++.|.+|
T Consensus       113 i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~p--~~i~~~~~--------g~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B          113 LAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFTGLNDP--DGVAVDNS--------GNVYVTDTDNNRVVKL  176 (270)
T ss_dssp             EEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCCSCCSC--CCEEECTT--------CCEEEEEGGGTEEEEE
T ss_pred             eEECCCCCEEEEECCC------CEEEEEECCCceeEeeccccCCCc--eeEEEeCC--------CCEEEEECCCCEEEEE
Confidence            3445566666665543      589999887665543322222222  23478887        5677777778999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEE-ECCCcEEEEeccccccccccccCCCCCeEEE
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVG-SLDGKIRLYSKTSMRQAKTAFPGLGSPITHV  469 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASG-S~DGtIRLWD~~t~r~akt~L~GH~d~ItsV  469 (634)
                      |+..... ......               .-....+++++++|.|.++ ..++.|++||..+.. .......+...+.+|
T Consensus       177 ~~~~~~~-~~~~~~---------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~p~~i  239 (270)
T 1rwi_B          177 EAESNNQ-VVLPFT---------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAV  239 (270)
T ss_dssp             CTTTCCE-EECCCS---------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC-CEECCCCSCSCEEEE
T ss_pred             ecCCCce-Eeeccc---------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc-ceeeccCCCCCceeE
Confidence            9876432 111110               0123567899999976555 457899999987632 222222334678999


Q ss_pred             EECCCCCEEEE-EcCCcEEEEEcc
Q 047036          470 DVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       470 dfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      +|+|||+.+++ +.++.|++++..
T Consensus       240 ~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          240 AVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EECCCCCEEEEECCCCEEEEEcCC
Confidence            99999998788 778999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.59  E-value=2.4e-06  Score=85.55  Aligned_cols=119  Identities=12%  Similarity=0.150  Sum_probs=82.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC---------eEEEEEcCCCCceEEecc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN---------RLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~---------tIklWD~R~~~~~Vq~l~  403 (634)
                      ..|++||+.+|+.++.+.. . .+  ..++|+||        | +++++..+.         .|.+||  + +. ++.+.
T Consensus       152 ~~l~~~d~~~~~~~~~l~~-~-~~--~~~~~spd--------g-~~~~~~~~~~~~~~~~~~~l~~~d--~-~~-~~~l~  214 (347)
T 2gop_A          152 TTFWIFDTESEEVIEEFEK-P-RF--SSGIWHRD--------K-IVVNVPHREIIPQYFKFWDIYIWE--D-GK-EEKMF  214 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEE-E-TT--CEEEEETT--------E-EEEEEECCCSSCCSSCCEEEEEEE--T-TE-EEEEE
T ss_pred             ceEEEEECCCCeEEeeecC-C-Cc--ccccCCCC--------e-EEEEEecccccccccccccEEEeC--C-Cc-eEEec
Confidence            5799999999988677766 3 43  35599998        7 788886652         455555  3 33 23332


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECC--------CcEEEEeccccccccccccCCCCCeEE-EEECC
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD--------GKIRLYSKTSMRQAKTAFPGLGSPITH-VDVTY  473 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D--------GtIRLWD~~t~r~akt~L~GH~d~Its-VdfSp  473 (634)
                      .+                ..+.++  +|+| +||.++.+        ..|.+||  ++ +.+..+++|...|.+ +.|+ 
T Consensus       215 ~~----------------~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-  272 (347)
T 2gop_A          215 EK----------------VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-  272 (347)
T ss_dssp             EE----------------ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-
T ss_pred             cC----------------cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc-
Confidence            11                122333  7888 78887755        4788888  44 355666778888987 9999 


Q ss_pred             CCCEEEE-EcCCcEEEEEcc
Q 047036          474 DGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD~~  492 (634)
                      || .+++ +.++.++|| +.
T Consensus       273 dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          273 GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             TE-EEEEEEETTEEEEE-EE
T ss_pred             Cc-EEEEEecCCcEEEE-Ec
Confidence            99 7776 889999999 74

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.58  E-value=1.1e-05  Score=77.92  Aligned_cols=146  Identities=10%  Similarity=0.034  Sum_probs=94.1

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC-CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK-DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      |..+.++++++++. +      +.|++||..++. +..+.... ..+  .-++++|+        +.+.++...++.|.+
T Consensus        72 i~~~~~g~l~v~~~-~------~~i~~~d~~~~~-~~~~~~~~~~~p--~~i~~~~~--------g~l~v~~~~~~~i~~  133 (270)
T 1rwi_B           72 LAVDGAGTVYVTDF-N------NRVVTLAAGSNN-QTVLPFDGLNYP--EGLAVDTQ--------GAVYVADRGNNRVVK  133 (270)
T ss_dssp             EEECTTCCEEEEET-T------TEEEEECTTCSC-CEECCCCSCSSE--EEEEECTT--------CCEEEEEGGGTEEEE
T ss_pred             eEECCCCCEEEEcC-C------CEEEEEeCCCce-EeeeecCCcCCC--cceEECCC--------CCEEEEECCCCEEEE
Confidence            33455666666665 3      589999988554 34443222 222  34588887        567777778899999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEE-ECCCcEEEEeccccccccccccCCCCCeEE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVG-SLDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASG-S~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      ||....... .....               ......+++++++|.|.++ ..++.|++||..+.. .......+...+.+
T Consensus       134 ~~~~~~~~~-~~~~~---------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~  196 (270)
T 1rwi_B          134 LAAGSKTQT-VLPFT---------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWG  196 (270)
T ss_dssp             ECTTCCSCE-ECCCC---------------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEE
T ss_pred             EECCCceeE-eeccc---------------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-eEeecccCCCCceE
Confidence            987653321 11100               0112356788998865544 567899999987643 22222333367899


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEc
Q 047036          469 VDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      |+++++|+..++ ..++.|.+||.
T Consensus       197 i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          197 IAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             EEECTTCCEEEEETTTSCEEEECT
T ss_pred             EEECCCCCEEEEECCCCcEEEEcC
Confidence            999999987777 45789999985

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.58  E-value=6.2e-08  Score=101.57  Aligned_cols=146  Identities=10%  Similarity=0.108  Sum_probs=74.1

Q ss_pred             ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                      .+|++++.|      ++|+.||+.+|+++.++..  +.+. +. .+.++        +..+++++.|++|+.||+++++.
T Consensus        10 ~~v~~gs~d------g~v~a~d~~tG~~~W~~~~--~~~~-s~-p~~~~--------g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A           10 TLLFVSTLD------GSLHAVSKRTGSIKWTLKE--DPVL-QV-PTHVE--------EPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             TEEEEEETT------SEEEEEETTTCCEEEEEEC--CCSC-CC-C-------------CCEEECTTTCCEEEC-----CC
T ss_pred             CEEEEEcCC------CEEEEEECCCCCEEEEecC--CCce-ec-ceEcC--------CCEEEEeCCCCEEEEEECCCCce
Confidence            455555554      6899999999999999887  3331 22 33333        45788889999999999987654


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCE
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW  477 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~  477 (634)
                      + ..+..+..         ......+    +...++.|++|+.|+.|+.||..+++ .+-.+..+.    .+.++|+|..
T Consensus        72 ~-w~~~~~~~---------~~~~~sp----~~~~~~~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~~~  132 (369)
T 2hz6_A           72 L-TKLPFTIP---------ELVQASP----CRSSDGILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPSTSL  132 (369)
T ss_dssp             S-EECSCCHH---------HHHTTCS----CC-----CCCCEEEEEEEEECCC---------------------------
T ss_pred             e-eeeeccCc---------cccccCc----eEecCCEEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccCCE
Confidence            2 23221100         0001111    11246688999999999999999885 555665543    2466788888


Q ss_pred             EEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036          478 ILG-TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       478 LlS-S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      |++ +.|++|+.||+.    +|+.+-.+
T Consensus       133 v~~~~~dg~v~a~d~~----tG~~~W~~  156 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTK----TRELRWNA  156 (369)
T ss_dssp             EEEEEEEEEEECCCSS----SSSCCCEE
T ss_pred             EEEEecCCEEEEEECC----CCCEEEeE
Confidence            887 889999999975    56654333

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.58  E-value=1.1e-06  Score=88.07  Aligned_cols=123  Identities=14%  Similarity=0.038  Sum_probs=77.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---------------------------C
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---------------------------N  385 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---------------------------~  385 (634)
                      ..|++||+.+|+..+....+.  +  ...+|+||        |+.|+.++.+                           .
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~--~--~~~~wspd--------g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  152 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN--I--RSLEWNED--------SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT  152 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE--E--EEEEECTT--------SSEEEEEEECCCC---------CCCC---------CEE
T ss_pred             ceEEEEECCCCceEEEEcCCC--c--cceeECCC--------CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence            359999999998776655543  4  45599999        5677776643                           6


Q ss_pred             eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCC-------cEEEEecccccccccc
Q 047036          386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDG-------KIRLYSKTSMRQAKTA  458 (634)
Q Consensus       386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DG-------tIRLWD~~t~r~akt~  458 (634)
                      .|++||+.++.. ++.+..                . .+.+++++|+|.+++++.++       ..+||.+.+++ . ..
T Consensus       153 ~l~~~d~~~~~~-~~~l~~----------------~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~-~~  212 (347)
T 2gop_A          153 TFWIFDTESEEV-IEEFEK----------------P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-E-EK  212 (347)
T ss_dssp             EEEEEETTTTEE-EEEEEE----------------E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-E-EE
T ss_pred             eEEEEECCCCeE-EeeecC----------------C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-e-EE
Confidence            799999987532 233321                1 24567889999545565542       44555443432 3 33


Q ss_pred             ccCCCCCeEEEEECCCCCEEEE-EcCC--------cEEEEE
Q 047036          459 FPGLGSPITHVDVTYDGKWILG-TTDT--------YLILIC  490 (634)
Q Consensus       459 L~GH~d~ItsVdfSpDGk~LlS-S~D~--------tIrLWD  490 (634)
                      |..+ ..+.++  ||||++|+. +.+.        .|.+||
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence            4444 556655  999999987 6443        466665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.54  E-value=2.8e-05  Score=76.42  Aligned_cols=156  Identities=8%  Similarity=0.035  Sum_probs=96.0

Q ss_pred             eeEEeCCcceEEecCCCC---------CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEe----cCCCCCCCCCCC
Q 047036          310 ALLMRGETNMMLMSPLKD---------GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDIT----NDTKSSQLDPSE  376 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~---------~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs----Pd~K~~q~~~g~  376 (634)
                      .+..+.++++++++..+.         .......|+.||.. |++...... ....  .-++|+    |+        ++
T Consensus       121 ~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~~~--~~i~~~~~~d~d--------g~  188 (314)
T 1pjx_A          121 DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQFP--NGIAVRHMNDGR--------PY  188 (314)
T ss_dssp             EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESSE--EEEEEEECTTSC--------EE
T ss_pred             CEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-CCCc--ceEEEecccCCC--------CC
Confidence            344556666666654320         00011468889987 776554332 2222  344888    87        44


Q ss_pred             EE-EEEeCCCeEEEEEcCCCCce-----EEecccCCCCccccccccccccCcceEEEEECCCCeEEE-EECCCcEEEEec
Q 047036          377 ST-FLGLDDNRLCQWDMRDRSGI-----VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVV-GSLDGKIRLYSK  449 (634)
Q Consensus       377 ~l-aSGS~D~tIklWD~R~~~~~-----Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IAS-GS~DGtIRLWD~  449 (634)
                      .+ ++...++.|.+||+...+.+     +..+.++.              ......++++++|.|.+ ...++.|.+||.
T Consensus       189 ~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--------------EGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--------------SCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--------------CCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            44 45567899999998622221     11111000              01245688899996554 457889999998


Q ss_pred             cccccccccccCCCCCeEEEEECCCCCEEEE-E-cCCcEEEEEcc
Q 047036          450 TSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T-TDTYLILICTL  492 (634)
Q Consensus       450 ~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~  492 (634)
                      .+++ ....+..+...+.+|+|+|||++|.. + .++.|..|++.
T Consensus       255 ~~g~-~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          255 DGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCc-EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            7543 45556666678999999999996655 3 35689999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.51  E-value=0.0004  Score=67.12  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      |..+.+++++++...+      +.|+++|.. |+.. .+..  +...  +..+++.|+        +.+.++...++.|.
T Consensus        67 i~~~~~g~l~v~~~~~------~~v~~~d~~-g~~~-~~~~~~~~~~--~~~i~~~~~--------g~l~v~~~~~~~i~  128 (300)
T 2qc5_A           67 LIVSSLGDIWFTENGA------NKIGKLSKK-GGFT-EYPLPQPDSG--PYGITEGLN--------GDIWFTQLNGDRIG  128 (300)
T ss_dssp             EEECTTSCEEEEETTT------TEEEEECTT-SCEE-EEECSSTTCC--EEEEEECST--------TCEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEecCC------CeEEEECCC-CCeE-EecCCCCCCC--CccceECCC--------CCEEEEccCCCeEE
Confidence            3445667777766543      579999998 8764 4432  2222  244577776        56777777789999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEeccccccccccccCCCCCeE
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~It  467 (634)
                      ++|+. +. . ..+....             ......++++.++|.|.++. ..+.|..||.. ++.....++++...+.
T Consensus       129 ~~~~~-g~-~-~~~~~~~-------------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  191 (300)
T 2qc5_A          129 KLTAD-GT-I-YEYDLPN-------------KGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPV  191 (300)
T ss_dssp             EECTT-SC-E-EEEECSS-------------TTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEE
T ss_pred             EECCC-CC-E-EEccCCC-------------CCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcc
Confidence            99987 33 2 2221000             11235678889999766555 47899999983 3322233455667799


Q ss_pred             EEEECCCCCEEEEE-cCCcEEEEEc
Q 047036          468 HVDVTYDGKWILGT-TDTYLILICT  491 (634)
Q Consensus       468 sVdfSpDGk~LlSS-~D~tIrLWD~  491 (634)
                      +|+++++|+..+++ ..+.|.+||.
T Consensus       192 ~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          192 GITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT
T ss_pred             eEEECCCCCEEEEccCCCEEEEEcC
Confidence            99999999988884 4667999984

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.51  E-value=9.6e-05  Score=71.57  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=95.0

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      +..+.++++.++...+      +.|.+||.. |+...- +..+...+  ..+++.++        +.+.++...++.|.+
T Consensus        25 i~~d~~g~l~v~~~~~------~~v~~~~~~-~~~~~~~~~~~~~~~--~~i~~~~~--------g~l~v~~~~~~~v~~   87 (300)
T 2qc5_A           25 ITSSEDGKVWFTQHKA------NKISSLDQS-GRIKEFEVPTPDAKV--MCLIVSSL--------GDIWFTENGANKIGK   87 (300)
T ss_dssp             EEECTTSCEEEEETTT------TEEEEECTT-SCEEEEECSSTTCCE--EEEEECTT--------SCEEEEETTTTEEEE
T ss_pred             eeECCCCCEEEEcCCC------CeEEEECCC-CceEEEECCCCCCcc--eeEEECCC--------CCEEEEecCCCeEEE
Confidence            3445666766766543      589999998 776542 22222222  34467776        566666666899999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEeccccccccccccCCCCCeEE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      +|+. +. . ..+....             ......++++.++|.|.++. .++.|..||.. ++.....++.....+.+
T Consensus        88 ~d~~-g~-~-~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           88 LSKK-GG-F-TEYPLPQ-------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             ECTT-SC-E-EEEECSS-------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             ECCC-CC-e-EEecCCC-------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence            9987 43 2 2221000             11235788889899665555 47899999987 33222345555678999


Q ss_pred             EEECCCCCEEEEE-cCCcEEEEEc
Q 047036          469 VDVTYDGKWILGT-TDTYLILICT  491 (634)
Q Consensus       469 VdfSpDGk~LlSS-~D~tIrLWD~  491 (634)
                      |++.++|+..+++ ..+.|..+|.
T Consensus       151 i~~d~~g~l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          151 ITLGSDNALWFTENQNNSIGRITN  174 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEECCCCCEEEEecCCCeEEEECC
Confidence            9999999977774 4678888884

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.47  E-value=8.8e-07  Score=95.20  Aligned_cols=144  Identities=10%  Similarity=0.069  Sum_probs=98.3

Q ss_pred             ccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc-----------EEEEEeccCCCcceeEEEEecCCCCCCC
Q 047036          304 NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK-----------IVTEWKFEKDGTDITMRDITNDTKSSQL  372 (634)
Q Consensus       304 ~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK-----------~V~~lkgH~~~V~I~vvsfsPd~K~~q~  372 (634)
                      -|+|...+.......++++++.+       .+++|++...+           ..... .+.. |  ..++|  |      
T Consensus        36 ~~~~~nlLais~~~gll~a~~~~-------~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V--~~l~f--d------   96 (388)
T 1xip_A           36 PFASLQNLDISNSKSLFVAASGS-------KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-V--IFVCF--H------   96 (388)
T ss_dssp             CSSCCBCEEEETTTTEEEEEETT-------EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-E--EEEEE--E------
T ss_pred             CcccccEEEEcCCCCEEEEeCCC-------EEEEEEhhHhhhhhccccccccceEEe-eCCC-e--eEEEE--C------
Confidence            35567777777888888888764       58899966443           11122 2444 5  45688  5      


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccc
Q 047036          373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~  452 (634)
                        +..|++| .++.|++||++...+ ...+..|..               .+.++.+.+. .+|+++.||+|.+||+..+
T Consensus        97 --~~~L~v~-~~~~l~v~dv~sl~~-~~~~~~~~~---------------~v~~i~~~~p-~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           97 --GDQVLVS-TRNALYSLDLEELSE-FRTVTSFEK---------------PVFQLKNVNN-TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             --TTEEEEE-ESSEEEEEESSSTTC-EEEEEECSS---------------CEEEEEECSS-EEEEEETTSEEEEEETTTC
T ss_pred             --CCEEEEE-cCCcEEEEEchhhhc-cCccceeec---------------ceeeEEecCC-CEEEEECCCCEEEEEccCC
Confidence              5789988 889999999987543 223322222               2334333332 4999999999999998764


Q ss_pred             ccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          453 RQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       453 r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      + ...    +...|+++++||+| ..+...|++|++|+..
T Consensus       157 ~-~~~----~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~  190 (388)
T 1xip_A          157 S-TKQ----LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWR  190 (388)
T ss_dssp             C-EEE----EEESEEEEEECSSE-EEEEETTSCEEEEEEE
T ss_pred             c-ccc----ccCCceEEEEcCCc-eEEEEcCCcEEEEcCC
Confidence            3 322    56789999999999 3444889999999754

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.42  E-value=1e-05  Score=91.86  Aligned_cols=109  Identities=13%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             eEEEEecCCCCCCCCCCCEEEEEeCC-----CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC
Q 047036          359 TMRDITNDTKSSQLDPSESTFLGLDD-----NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG  433 (634)
Q Consensus       359 ~vvsfsPd~K~~q~~~g~~laSGS~D-----~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG  433 (634)
                      ...+||||        |+.||.++++     .+|++||+.++.. +....                ....+..++++||.
T Consensus       166 ~~~~~SPD--------G~~la~~~~~~G~e~~~i~v~dl~tg~~-~~~~~----------------~~~~~~~~~wspD~  220 (741)
T 1yr2_A          166 DAWAASDD--------GRLLAYSVQDGGSDWRTVKFVGVADGKP-LADEL----------------KWVKFSGLAWLGND  220 (741)
T ss_dssp             EEEEECTT--------SSEEEEEEEETTCSEEEEEEEETTTCCE-EEEEE----------------EEEESCCCEESTTS
T ss_pred             EeEEECCC--------CCEEEEEEcCCCCceEEEEEEECCCCCC-CCccC----------------CCceeccEEEECCC
Confidence            45699999        6677777655     5799999998653 22110                01123456788886


Q ss_pred             eEEEEECCCc--------------EEEEecccccc---ccccccCCCCCeEEEEECCCCCEEEE-EcC-----CcEEEEE
Q 047036          434 SIVVGSLDGK--------------IRLYSKTSMRQ---AKTAFPGLGSPITHVDVTYDGKWILG-TTD-----TYLILIC  490 (634)
Q Consensus       434 ~IASGS~DGt--------------IRLWD~~t~r~---akt~L~GH~d~ItsVdfSpDGk~LlS-S~D-----~tIrLWD  490 (634)
                      .|+.++.|+.              |++|++.+...   .....++|...+.++.|||||++|+. +.+     +.|.+||
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d  300 (741)
T 1yr2_A          221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVAR  300 (741)
T ss_dssp             EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEE
T ss_pred             EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEE
Confidence            6888887765              99999866431   11222344446999999999999997 544     3799999


Q ss_pred             cc
Q 047036          491 TL  492 (634)
Q Consensus       491 ~~  492 (634)
                      +.
T Consensus       301 ~~  302 (741)
T 1yr2_A          301 VT  302 (741)
T ss_dssp             EE
T ss_pred             CC
Confidence            75

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.39  E-value=7.9e-05  Score=73.22  Aligned_cols=134  Identities=13%  Similarity=0.039  Sum_probs=82.2

Q ss_pred             CcEEEEeCCCCcEEEEEe----ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEec-ccCCC
Q 047036          333 PGVQQLDIETGKIVTEWK----FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM-VKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lk----gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l-~gh~s  407 (634)
                      +.|++||+.+|++..-..    ++...+  ..++++|+        +..++.+...+.|.+||+. +. . ..+ .....
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~--~~i~~~~~--------~g~l~v~~~~~~l~~~d~~-g~-~-~~~~~~~~~  112 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIP--AGCQCDRD--------ANQLFVADMRLGLLVVQTD-GT-F-EEIAKKDSE  112 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCE--EEEEECSS--------SSEEEEEETTTEEEEEETT-SC-E-EECCSBCTT
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCC--ceEEEecC--------CCcEEEEECCCCEEEEeCC-CC-E-EEEEeccCC
Confidence            689999999998754322    243433  33477776        2356666666689999997 43 2 233 21100


Q ss_pred             CccccccccccccCcceEEEEECCCCeEEEEEC-C---------------CcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL-D---------------GKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~-D---------------GtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                             +   .......+++++++|.|.+++. +               +.|..||.. ++ ... +..+.....++++
T Consensus       113 -------~---~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~-~~~~~~~~~~i~~  179 (314)
T 1pjx_A          113 -------G---RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQ-VDTAFQFPNGIAV  179 (314)
T ss_dssp             -------S---CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEE-EEEEESSEEEEEE
T ss_pred             -------C---ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEE-eccCCCCcceEEE
Confidence                   0   0112356788999996655543 3               567777754 32 222 2233345689999


Q ss_pred             C----CCCCEEE-E-EcCCcEEEEEcc
Q 047036          472 T----YDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       472 S----pDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      +    |||++|. + +.++.|.+||..
T Consensus       180 ~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          180 RHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             ecccCCCCCEEEEEECCCCeEEEEECC
Confidence            9    9997654 4 467899999964

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.37  E-value=4.3e-05  Score=86.69  Aligned_cols=133  Identities=12%  Similarity=0.049  Sum_probs=84.5

Q ss_pred             CcEEEEeCCCCc----EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-----CeEEEEEcCCCCce-EEec
Q 047036          333 PGVQQLDIETGK----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-----NRLCQWDMRDRSGI-VQNM  402 (634)
Q Consensus       333 ~TIrlWDleTGK----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-----~tIklWD~R~~~~~-Vq~l  402 (634)
                      ..|++|++.+++    ++.....|...+  ....|+||        |+.|+..+.+     ..|++||+.++... .+.+
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~--~~~~~SpD--------G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRG--HGASVSSD--------GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCE--EEEEECTT--------SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEE--EEEEECCC--------CCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence            469999999886    333333343333  34589999        5667766654     48999999865211 2344


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC----CcEEEEecccc-ccccccccCCCCCeEEEEECCCCC
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD----GKIRLYSKTSM-RQAKTAFPGLGSPITHVDVTYDGK  476 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D----GtIRLWD~~t~-r~akt~L~GH~d~ItsVdfSpDGk  476 (634)
                      ..+...              .... .+ ++| .|+..+.+    +.|.+||+.+. ......++++...|.+++++ ++.
T Consensus       313 ~~~~~~--------------~~~~-~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~  375 (741)
T 1yr2_A          313 IPDLKA--------------QWDF-VD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR  375 (741)
T ss_dssp             ECSSSS--------------CEEE-EE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred             cCCCCc--------------eEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence            322211              1222 23 555 78877764    45999998763 13456677777778888888 556


Q ss_pred             EEEE-EcCCcEEEEEcc
Q 047036          477 WILG-TTDTYLILICTL  492 (634)
Q Consensus       477 ~LlS-S~D~tIrLWD~~  492 (634)
                      .+++ ..|+..+||...
T Consensus       376 lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          376 LFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEEEETTEEEEEEEE
T ss_pred             EEEEEEECCEEEEEEEe
Confidence            6666 779998888754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.36  E-value=0.00018  Score=69.64  Aligned_cols=148  Identities=6%  Similarity=0.010  Sum_probs=97.4

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      .+..+.++++++++...      +.|++||. +|++... +..+...+  ..++++|+        +.+.++...++.|.
T Consensus       145 ~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~~--~~i~~~~~--------g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          145 FITLGSDNALWFTENQN------NAIGRITE-SGDITEFKIPTPASGP--VGITKGND--------DALWFVEIIGNKIG  207 (299)
T ss_dssp             EEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTTCCE--EEEEECTT--------SSEEEEETTTTEEE
T ss_pred             eEEEcCCCCEEEEeCCC------CEEEEEcC-CCcEEEeeCCCCCCcc--eeEEECCC--------CCEEEEccCCceEE
Confidence            34455666777766443      58999999 8887653 22222222  34477776        56666666789999


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEeccccccccccccCCCCCeE
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSPIT  467 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~It  467 (634)
                      +||+ ++.  +..+...             .......+++++++|.|.++. .++.|..||..+ +.....++++...+.
T Consensus       208 ~~~~-~g~--~~~~~~~-------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~  270 (299)
T 2z2n_A          208 RITT-SGE--ITEFKIP-------------TPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN-IIEEYPIQIKSAEPH  270 (299)
T ss_dssp             EECT-TCC--EEEEECS-------------STTCCEEEEEECSTTCEEEEETTTTEEEEEETTT-EEEEEECSSSSCCEE
T ss_pred             EECC-CCc--EEEEECC-------------CCCCCceeEEECCCCCEEEeccCCceEEEECCCC-ceEEEeCCCCCCccc
Confidence            9999 543  2222100             011235788999999776665 678999999843 322233566778899


Q ss_pred             EEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          468 HVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       468 sVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      +|++ ++|+..+++..+.|..++..
T Consensus       271 ~i~~-~~g~l~v~~~~~~l~~~~~~  294 (299)
T 2z2n_A          271 GICF-DGETIWFAMECDKIGKLTLI  294 (299)
T ss_dssp             EEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred             eEEe-cCCCEEEEecCCcEEEEEcC
Confidence            9999 99998888656777777753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.36  E-value=1.2e-05  Score=90.99  Aligned_cols=134  Identities=10%  Similarity=0.022  Sum_probs=85.4

Q ss_pred             CcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe-------------EEEEEcCCCCc-
Q 047036          333 PGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR-------------LCQWDMRDRSG-  397 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t-------------IklWD~R~~~~-  397 (634)
                      .+|++||++||+.+.. +.+...    ..++|+ |        ++.|+.++.+..             |++|++.+... 
T Consensus       155 ~~i~v~dl~tg~~~~~~~~~~k~----~~~~Ws-D--------g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~  221 (693)
T 3iuj_A          155 REIHLMDVESKQPLETPLKDVKF----SGISWL-G--------NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED  221 (693)
T ss_dssp             EEEEEEETTTCSEEEEEEEEEES----CCCEEE-T--------TTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred             EEEEEEECCCCCCCccccCCcee----ccEEEe-C--------CCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence            6899999999997764 333311    234899 8        567888888754             99999876532 


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEE-E---CCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG-S---LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG-S---~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS  472 (634)
                      .+..+...         .  . ....+..+++|+|| +|+.. +   ..+.|++||+.+.......|..+.+.+... ++
T Consensus       222 ~~~v~~~~---------~--~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~  288 (693)
T 3iuj_A          222 DRLVFGAI---------P--A-QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD  288 (693)
T ss_dssp             CEEEESCS---------G--G-GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE
T ss_pred             ceEEEecC---------C--C-CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee
Confidence            11111100         0  0 01124567889999 55443 3   235899999876422345566677777766 88


Q ss_pred             CCCCEEEE-EcC----CcEEEEEcc
Q 047036          473 YDGKWILG-TTD----TYLILICTL  492 (634)
Q Consensus       473 pDGk~LlS-S~D----~tIrLWD~~  492 (634)
                      ++|.+|+. +..    ..|.+||+.
T Consensus       289 ~~g~~l~~~t~~~~~~~~l~~~d~~  313 (693)
T 3iuj_A          289 NKGSTLYLLTNRDAPNRRLVTVDAA  313 (693)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEETT
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCC
Confidence            89988876 543    467788864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.36  E-value=4.7e-05  Score=78.08  Aligned_cols=173  Identities=8%  Similarity=0.014  Sum_probs=102.9

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC------CcceeEEEEecCCCCCCCCCCCEEE
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD------GTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~------~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      .|.+ +.++.++++++++.... ...+..|.+||+.+|++++++..+..      .+  .-++|+|+.       +...+
T Consensus        68 ~p~g-v~~d~~g~L~v~D~g~~-~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~--~~v~vd~~~-------g~~yv  136 (343)
T 2qe8_A           68 TVLG-IKSDGNGIVWMLDNGNQ-SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFV--NDLAVDLIH-------NFVYI  136 (343)
T ss_dssp             CEEE-EEECSSSEEEEEECHHH-HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCC--CEEEEETTT-------TEEEE
T ss_pred             EeeE-EEEcCCCcEEEEcCCCC-cCCCCeEEEEECCCCeEEEEEECChhhccccccc--ceEEEecCC-------CEEEE
Confidence            3443 33455556666553210 00025799999999999998875421      22  234778751       33445


Q ss_pred             EEe---CCCeEEEEEcCCCCceEEecccCCCC----ccccccccccc----------cCcceEEEEECCCC-eEEEEECC
Q 047036          380 LGL---DDNRLCQWDMRDRSGIVQNMVKGDSP----VLHWTQGHQFS----------RGTNFQCFASTGDG-SIVVGSLD  441 (634)
Q Consensus       380 SGS---~D~tIklWD~R~~~~~Vq~l~gh~s~----V~~~~~g~~y~----------~~~~fssva~s~dG-~IASGS~D  441 (634)
                      +.+   .+++|.+||+.++. ....+.+|...    +..+..+..+.          .......++++++| .|+++...
T Consensus       137 td~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          137 SDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred             EcCccCCCCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence            655   68999999998654 44555544221    11111122111          11224678999999 68888877


Q ss_pred             CcEEEEecccc--c-------cccc--cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          442 GKIRLYSKTSM--R-------QAKT--AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       442 GtIRLWD~~t~--r-------~akt--~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      +. +||.+...  +       +...  ...|+.....+|+++++|+..++ ...+.|.+||.
T Consensus       216 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          216 ST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            74 56654321  0       0001  12244445678999999999999 78899999996

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.31  E-value=8.3e-05  Score=74.54  Aligned_cols=132  Identities=11%  Similarity=-0.027  Sum_probs=83.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|++||. +|+ +..|..+...+  ..++++|+        |+++++...++.|.+||+. +.  +..+..+..     
T Consensus        67 ~~i~~~~~-~g~-~~~~~~~~~~~--~gl~~d~d--------G~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~~-----  126 (305)
T 3dr2_A           67 RRVLGWRE-DGT-VDVLLDATAFT--NGNAVDAQ--------QRLVHCEHGRRAITRSDAD-GQ--AHLLVGRYA-----  126 (305)
T ss_dssp             TEEEEEET-TSC-EEEEEESCSCE--EEEEECTT--------SCEEEEETTTTEEEEECTT-SC--EEEEECEET-----
T ss_pred             CEEEEEeC-CCC-EEEEeCCCCcc--ceeeECCC--------CCEEEEECCCCEEEEECCC-CC--EEEEEeccC-----
Confidence            68999998 576 45666666544  45588887        5666665567899999986 32  233321100     


Q ss_pred             ccccccccCcceEEEEECCCCeEEE-----EEC-------------CCcEEEEeccccccccccccCCCCCeEEEEECCC
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVV-----GSL-------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD  474 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IAS-----GS~-------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD  474 (634)
                        +.   .......++++++|.|..     |..             .+.|..||..+++ .....  ......+|+|+||
T Consensus       127 --~~---~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~--~~~~p~gl~~spd  198 (305)
T 3dr2_A          127 --GK---RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA--DLDHPNGLAFSPD  198 (305)
T ss_dssp             --TE---ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE--EESSEEEEEECTT
T ss_pred             --CC---ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe--cCCCCcceEEcCC
Confidence              11   112235678899996655     432             3568888876543 33222  3345689999999


Q ss_pred             CCEEEE-EcC------CcEEEEEcc
Q 047036          475 GKWILG-TTD------TYLILICTL  492 (634)
Q Consensus       475 Gk~LlS-S~D------~tIrLWD~~  492 (634)
                      |++|.. ...      +.|.+|++.
T Consensus       199 g~~lyv~~~~~~~~~~~~i~~~~~~  223 (305)
T 3dr2_A          199 EQTLYVSQTPEQGHGSVEITAFAWR  223 (305)
T ss_dssp             SSEEEEEECCC---CCCEEEEEEEE
T ss_pred             CCEEEEEecCCcCCCCCEEEEEEec
Confidence            997765 444      689999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.31  E-value=0.00014  Score=77.37  Aligned_cols=165  Identities=10%  Similarity=0.031  Sum_probs=101.7

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE----eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW----KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l----kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      +.++.++++|+.+..+.    ...|++||..++..++.+    ..+...+  .-++|+|+        +..|+.+..+++
T Consensus       176 ia~~~~g~~l~~~d~~~----~~~I~~~d~~~~~~~~~~g~~~~~~~~~p--~~iav~p~--------~g~lyv~d~~~~  241 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEG----THTVYVYMKASGWAPTRIGQLGSTFSGKI--GAVALDET--------EEWLYFVDSNKN  241 (409)
T ss_dssp             CEECTTSSEEEEEBSST----TCEEEEEEGGGTTCEEEEEECCTTSCSCC--CBCEECTT--------SSEEEEECTTCE
T ss_pred             eeEecCCCcEEEEecCC----CceEEEEEcCCCceeEEeeeccchhcCCc--EEEEEeCC--------CCeEEEEECCCc
Confidence            44556666665554432    128999999888765555    2122332  23488885        245666777899


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeE-EEEECCCcEEEEeccccccccccccCCC-
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSI-VVGSLDGKIRLYSKTSMRQAKTAFPGLG-  463 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~I-ASGS~DGtIRLWD~~t~r~akt~L~GH~-  463 (634)
                      |++||+..+..  ..+.+...      .+..  ...+++.++++| +|+| ++-+..+.|+.||..+.   ..++.|+. 
T Consensus       242 I~~~d~~~~~~--~~~~~~~~------~g~~--~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~  308 (409)
T 3hrp_A          242 FGRFNVKTQEV--TLIKQLEL------SGSL--GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSAT  308 (409)
T ss_dssp             EEEEETTTCCE--EEEEECCC------CSCC--CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTT
T ss_pred             EEEEECCCCCE--EEEecccc------cCCC--CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCC
Confidence            99999986542  22211000      0100  111233788888 5765 55567899999997642   22333332 


Q ss_pred             --------------CCeEEEEECCCCCEEEE-E-cCCcEEEEEcccccCCCCeeeeecCC
Q 047036          464 --------------SPITHVDVTYDGKWILG-T-TDTYLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       464 --------------d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                                    ....+|+|+|||+.+++ + ..+.|+.|++.    +|. +..+.|+
T Consensus       309 ~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~----~G~-v~~~~g~  363 (409)
T 3hrp_A          309 QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL----DGY-VSTVAGQ  363 (409)
T ss_dssp             CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT----TTE-EEEEEEC
T ss_pred             CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC----CCE-EEEEeCC
Confidence                          34789999999998888 7 88999999953    344 4455554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.24  E-value=3.8e-05  Score=81.80  Aligned_cols=154  Identities=8%  Similarity=0.015  Sum_probs=100.0

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      .|..+ .++.++++++++..+      +.|++||+.+|++...+.+...  . . ++|+|+        ++.|+++..++
T Consensus       132 ~P~~l-a~d~~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~~~--~-~-ia~~~~--------g~~l~~~d~~~  192 (409)
T 3hrp_A          132 YMWGI-AAVGNNTVLAYQRDD------PRVRLISVDDNKVTTVHPGFKG--G-K-PAVTKD--------KQRVYSIGWEG  192 (409)
T ss_dssp             CEEEE-EECSTTEEEEEETTT------TEEEEEETTTTEEEEEEETCCB--C-B-CEECTT--------SSEEEEEBSST
T ss_pred             CceEE-EEeCCCCEEEEecCC------CcEEEEECCCCEEEEeeccCCC--C-c-eeEecC--------CCcEEEEecCC
Confidence            46554 455777877777653      6899999998877665554322  1 3 589998        67888888765


Q ss_pred             --eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEecccccccccc----
Q 047036          386 --RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTA----  458 (634)
Q Consensus       386 --tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~----  458 (634)
                        .|.+||...+.. ...+.....        +   ......++++++ +|.|+++..++.|+.||..+.. ....    
T Consensus       193 ~~~I~~~d~~~~~~-~~~~g~~~~--------~---~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~~~~  259 (409)
T 3hrp_A          193 THTVYVYMKASGWA-PTRIGQLGS--------T---FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIKQLE  259 (409)
T ss_dssp             TCEEEEEEGGGTTC-EEEEEECCT--------T---SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEEECC
T ss_pred             CceEEEEEcCCCce-eEEeeeccc--------h---hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEeccc
Confidence              899999875432 222200000        0   011235678888 7888888888999999987642 2221    


Q ss_pred             ccCCCCCe--EEEEECCC-CCEEEE-EcCCcEEEEEc
Q 047036          459 FPGLGSPI--THVDVTYD-GKWILG-TTDTYLILICT  491 (634)
Q Consensus       459 L~GH~d~I--tsVdfSpD-Gk~LlS-S~D~tIrLWD~  491 (634)
                      ..++...-  .+|+|+|+ |..+++ +..++|+.|+.
T Consensus       260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            22333222  39999995 555566 67889999984

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.17  E-value=0.00084  Score=68.31  Aligned_cols=130  Identities=15%  Similarity=0.056  Sum_probs=79.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|++||+.+|+. +.+.. ...|  ..+.++|+        +.+++ ++ ...|.+||+.++.  +..+.....     
T Consensus        71 ~~i~~~d~~~~~~-~~~~~-~~~v--~~i~~~~d--------g~l~v-~~-~~gl~~~d~~~g~--~~~~~~~~~-----  129 (326)
T 2ghs_A           71 RELHELHLASGRK-TVHAL-PFMG--SALAKISD--------SKQLI-AS-DDGLFLRDTATGV--LTLHAELES-----  129 (326)
T ss_dssp             TEEEEEETTTTEE-EEEEC-SSCE--EEEEEEET--------TEEEE-EE-TTEEEEEETTTCC--EEEEECSST-----
T ss_pred             CEEEEEECCCCcE-EEEEC-CCcc--eEEEEeCC--------CeEEE-EE-CCCEEEEECCCCc--EEEEeeCCC-----
Confidence            6899999998765 44543 2333  45578887        44555 44 4469999998754  223321100     


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECC-------CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcC
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLD-------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTD  483 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~D-------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D  483 (634)
                        +   .....+..++++++|.|.+++..       +.|..+|  +++ ... +..+.....+++|+|||++|..  +.+
T Consensus       130 --~---~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          130 --D---LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTK-LFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             --T---CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             --C---CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence              0   01234678899999976665532       3455555  332 322 3223345789999999997754  457


Q ss_pred             CcEEEEEcc
Q 047036          484 TYLILICTL  492 (634)
Q Consensus       484 ~tIrLWD~~  492 (634)
                      +.|.+||+.
T Consensus       201 ~~I~~~d~~  209 (326)
T 2ghs_A          201 NRLMRVPLD  209 (326)
T ss_dssp             CEEEEEEBC
T ss_pred             CEEEEEEcc
Confidence            889999963

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.04  E-value=0.00019  Score=77.14  Aligned_cols=135  Identities=11%  Similarity=-0.034  Sum_probs=86.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----------CCCeEEEEEcCCCCceEEec
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----------DDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----------~D~tIklWD~R~~~~~Vq~l  402 (634)
                      ++|.+.|+.|++++.++......   . +.++||        +..++.+.          .+++|.+||+.+.. ++.++
T Consensus        59 ~~V~ViD~~t~~v~~~I~vG~~P---~-va~spD--------G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~-v~~~I  125 (386)
T 3sjl_D           59 TQQFVIDGEAGRVIGMIDGGFLP---N-PVVADD--------GSFIAHASTVFSRIARGERTDYVEVFDPVTLL-PTADI  125 (386)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC---E-EEECTT--------SSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCC---c-EEECCC--------CCEEEEEcccccccccCCCCCEEEEEECCCCe-EEEEE
Confidence            58999999999999999865542   4 599999        44566554          47899999999864 45554


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC--CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL--DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL  479 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~--DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll  479 (634)
                      .-..        ++.......-..++++||| +|+++..  +++|.++|..+++ .+.+++--+ .  ...+....+.++
T Consensus       126 ~v~~--------g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~g-~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          126 ELPD--------APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPD-C--YHIFPTAPDTFF  193 (386)
T ss_dssp             EETT--------CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS-E--EEEEEEETTEEE
T ss_pred             ECCC--------ccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECCC-c--ceeecCCCceeE
Confidence            2000        0000000011246889999 6777764  6899999998864 555554211 1  222333345555


Q ss_pred             E-EcCCcEEEEEcc
Q 047036          480 G-TTDTYLILICTL  492 (634)
Q Consensus       480 S-S~D~tIrLWD~~  492 (634)
                      + +.|+.+.++++.
T Consensus       194 ~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          194 MHCRDGSLAKVAFG  207 (386)
T ss_dssp             EEETTSCEEEEECC
T ss_pred             EECCCCCEEEEECC
Confidence            6 778888777754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.98  E-value=0.00043  Score=69.30  Aligned_cols=129  Identities=11%  Similarity=0.106  Sum_probs=80.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC------CeEEEEEcCCCCceEEecccCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD------NRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D------~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                      ..|+.+|..+|++.... +. ...  .-++|+||        +..|+.+...      +.|.+||+...+  +....   
T Consensus       169 ~~v~~~d~~~g~~~~~~-~~-~~p--~gl~~spd--------g~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~---  231 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA-DL-DHP--NGLAFSPD--------EQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRR---  231 (305)
T ss_dssp             EEEEEECSSSCCCEEEE-EE-SSE--EEEEECTT--------SSEEEEEECCC---CCCEEEEEEEETTE--EEEEE---
T ss_pred             CeEEEEcCCCCcEEEEe-cC-CCC--cceEEcCC--------CCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCe---
Confidence            47999999888865543 22 222  34589999        5667666555      799999987542  11100   


Q ss_pred             CCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcE
Q 047036          407 SPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYL  486 (634)
Q Consensus       407 s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tI  486 (634)
                        ++  ...    .......++++++|.|.+++.+| |.+||..+ + ....+..+. .+.+++|+|||+.|..+..+.|
T Consensus       232 --~~--~~~----~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~g-~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          232 --HF--ASV----PDGLPDGFCVDRGGWLWSSSGTG-VCVFDSDG-Q-LLGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             --EE--ECC----SSSCCCSEEECTTSCEEECCSSE-EEEECTTS-C-EEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             --EE--EEC----CCCCCCeEEECCCCCEEEecCCc-EEEECCCC-C-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence              00  000    00012346788999887777665 99999865 2 334444333 5899999999998887544554


Q ss_pred             EEEE
Q 047036          487 ILIC  490 (634)
Q Consensus       487 rLWD  490 (634)
                      ..++
T Consensus       300 ~~~~  303 (305)
T 3dr2_A          300 WMLP  303 (305)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.96  E-value=1e-06  Score=92.25  Aligned_cols=147  Identities=10%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      ..+++.++.|      ++|+.||+++|+.+.+|..+....   + ..+|--  .   .+..+++|+.|++|+.||+++++
T Consensus        49 g~~~v~~s~d------g~l~a~d~~tG~~~w~~~~~~~~~---~-~~sp~~--~---~~~~v~~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           49 EPAFLPDPND------GSLYTLGSKNNEGLTKLPFTIPEL---V-QASPCR--S---SDGILYMGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             -CCEEECTTT------CCEEEC-----CCSEECSCCHHHH---H-TTCSCC----------CCCCEEEEEEEEECCC---
T ss_pred             CCEEEEeCCC------CEEEEEECCCCceeeeeeccCccc---c-ccCceE--e---cCCEEEEEeCCCEEEEEECCCCc
Confidence            3455555443      689999999999998887664321   0 112210  0   03578899999999999999875


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCC-
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD-  474 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD-  474 (634)
                      . +..+..+.                   ...++| ++.|++|+.|+.|+.||..+++ .+-.++.+.  ..+..++++ 
T Consensus       114 ~-~w~~~~~~-------------------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~~~~--~~~~~~~~~~  170 (369)
T 2hz6_A          114 K-QQTLSSAF-------------------ADSLSPSTSLLYLGRTEYTITMYDTKTRE-LRWNATYFD--YAASLPEDDV  170 (369)
T ss_dssp             ---------------------------------------EEEEEEEEEEECCCSSSSS-CCCEEEEEE--ECCBCCCCCT
T ss_pred             E-EEEecCCC-------------------cccccccCCEEEEEecCCEEEEEECCCCC-EEEeEeccc--ccCccccCCc
Confidence            3 33332110                   011233 4589999999999999998874 443333111  223344444 


Q ss_pred             ---CCEEEEEcCCcEEEEEcccccCCCCeeeeec
Q 047036          475 ---GKWILGTTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       475 ---Gk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                         +..++++.|+.|+.||..    +|+.+-.+.
T Consensus       171 ~~~~~v~~~~~dg~v~a~d~~----tG~~~W~~~  200 (369)
T 2hz6_A          171 DYKMSHFVSNGDGLVVTVDSE----SGDVLWIQN  200 (369)
T ss_dssp             TCCCCEEEEETSCEEEEECTT----TCCEEEEEE
T ss_pred             cccceEEEECCCCEEEEEECC----CCcEEEEec
Confidence               565556899999999975    677665554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.91  E-value=0.00025  Score=75.36  Aligned_cols=73  Identities=7%  Similarity=0.009  Sum_probs=51.6

Q ss_pred             EEECCCC-eEEEEEC---------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-E-cCCcEEEEEccc
Q 047036          427 FASTGDG-SIVVGSL---------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-T-TDTYLILICTLF  493 (634)
Q Consensus       427 va~s~dG-~IASGS~---------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S-~D~tIrLWD~~~  493 (634)
                      ++++++| +|.++..         ++.+.++|..+.+ ....++.. ....+|+|+|||++|+ + . .+++|.+||+. 
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~-  345 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA-  345 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESS-
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-EEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECC-
Confidence            6788887 6665432         2345599998864 55666632 3589999999998654 4 4 48999999986 


Q ss_pred             ccCCCCeeeeec
Q 047036          494 SDKDGKTKTGFS  505 (634)
Q Consensus       494 ~~~~G~~~~gF~  505 (634)
                         +++.+..+.
T Consensus       346 ---t~kvv~~I~  354 (368)
T 1mda_H          346 ---SDQDQSSVE  354 (368)
T ss_dssp             ---SCEEEEECC
T ss_pred             ---CCcEEEEEE
Confidence               676665554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.89  E-value=0.00044  Score=78.62  Aligned_cols=157  Identities=16%  Similarity=0.175  Sum_probs=100.3

Q ss_pred             cEEEEeCCCCcEEEEEec--cCCC----c-ceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          334 GVQQLDIETGKIVTEWKF--EKDG----T-DITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkg--H~~~----V-~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                      +|+.+|+.||+++-.++.  |...    + ...+..+..++|.     ...++.++.++.|+++|.++++. +..+.-  
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~-----~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~--  355 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP-----RKVILHAPKNGFFFVLDRTNGKF-ISAKNF--  355 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE-----EEEEEECCTTSEEEEEETTTCCE-EEEEES--
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE-----eeEEEEECCCCEEEEEECCCCCE-eccccc--
Confidence            699999999999988875  3210    0 0123344445221     15799999999999999998753 333210  


Q ss_pred             CCccccccc-----c-------cc-----------ccCcceEEEEECCCC-eEEEEEC----------------------
Q 047036          407 SPVLHWTQG-----H-------QF-----------SRGTNFQCFASTGDG-SIVVGSL----------------------  440 (634)
Q Consensus       407 s~V~~~~~g-----~-------~y-----------~~~~~fssva~s~dG-~IASGS~----------------------  440 (634)
                      .++ .|..+     .       .|           .-..++..++++|++ .|++++.                      
T Consensus       356 ~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~  434 (677)
T 1kb0_A          356 VPV-NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKP  434 (677)
T ss_dssp             SCC-SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTST
T ss_pred             ccc-CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccc
Confidence            000 01000     0       00           001123356788765 6666543                      


Q ss_pred             ---------------------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC
Q 047036          441 ---------------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG  498 (634)
Q Consensus       441 ---------------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G  498 (634)
                                           .|.|+.||+.+++ .+-.++ ++.++.+..++.+|..|+. +.|++|++||+.    +|
T Consensus       435 ~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~----tG  508 (677)
T 1kb0_A          435 QSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK-AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA----TG  508 (677)
T ss_dssp             TGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE-EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT----TC
T ss_pred             ccccccccccccccccCCCCCccEEEEEeCCCCc-EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC----CC
Confidence                                 2789999998874 555554 4556777778888888887 889999999986    78


Q ss_pred             Ceeeeec
Q 047036          499 KTKTGFS  505 (634)
Q Consensus       499 ~~~~gF~  505 (634)
                      +.+-.|.
T Consensus       509 ~~lw~~~  515 (677)
T 1kb0_A          509 EKLWEAP  515 (677)
T ss_dssp             CEEEEEE
T ss_pred             ceeeeee
Confidence            8877775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.82  E-value=0.00018  Score=80.63  Aligned_cols=106  Identities=12%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc--cc
Q 047036          376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT--SM  452 (634)
Q Consensus       376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~--t~  452 (634)
                      ..+++...+++|.+||+.+++ ++..+.                ......+++++||| +|++++.|+.|.+||+.  ++
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~-v~~~i~----------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~  230 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYE-IKTVLD----------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP  230 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCC-EEEEEE----------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             eEEEEeCCCCeEEEEECCCCe-EEEEEe----------------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC
Confidence            467778889999999998864 455553                11223578899999 78999999999999985  54


Q ss_pred             ccccccccCCCCCeEEEEEC----CCCCEEEE--EcCCcEEEEEcccccCCCCeeeee
Q 047036          453 RQAKTAFPGLGSPITHVDVT----YDGKWILG--TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       453 r~akt~L~GH~d~ItsVdfS----pDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      + ....++. +....+|+||    |||+||+.  -.+++|.++|+.    +++.+..+
T Consensus       231 ~-~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~----t~~~~~~i  282 (567)
T 1qks_A          231 T-TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE----TLEPKKIQ  282 (567)
T ss_dssp             C-EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT----TCCEEEEE
T ss_pred             c-EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC----CCcEEEEE
Confidence            3 4455654 3346899999    79999987  457999999974    56655543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.82  E-value=0.00034  Score=79.72  Aligned_cols=159  Identities=13%  Similarity=0.185  Sum_probs=96.3

Q ss_pred             cEEEEeCCCCcEEEEEec--cCCC----c-ceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          334 GVQQLDIETGKIVTEWKF--EKDG----T-DITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkg--H~~~----V-~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                      +|+.||+.||+++-.++.  |...    . .+.+..+..+++.     ...++.++.++.|+++|.++++. +....-  
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~-----~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~--  347 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP-----RKVLMQAPKNGFFYVIDRATGEL-LSAKGI--  347 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE-----EEEEEECCTTSEEEEEETTTCCE-EEEEES--
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE-----EEEEEEECCCCeEEEEECCCCCE-eccccc--
Confidence            599999999999988875  3210    0 0112233333210     13788999999999999998754 321110  


Q ss_pred             CCcccccccc-------------c--c------------ccCcceEEEEECCCC-eEEEEEC------------------
Q 047036          407 SPVLHWTQGH-------------Q--F------------SRGTNFQCFASTGDG-SIVVGSL------------------  440 (634)
Q Consensus       407 s~V~~~~~g~-------------~--y------------~~~~~fssva~s~dG-~IASGS~------------------  440 (634)
                      .++ .|..+-             .  |            .-..++..++++|+. .|++++.                  
T Consensus       348 ~~~-~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~  426 (689)
T 1yiq_A          348 VPQ-SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPF  426 (689)
T ss_dssp             SCC-SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSC
T ss_pred             ccc-ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccc
Confidence            000 011100             0  0            011123346777764 5665532                  


Q ss_pred             ---------------------------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          441 ---------------------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       441 ---------------------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                                                 +|.|+.||+.+++ .+-.++.+ .++.+-.++..|..|.. +.|++|+.||+.
T Consensus       427 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          427 KSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             TTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE-EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC-eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECC
Confidence                                       4889999999875 55556543 44555566767777777 889999999986


Q ss_pred             cccCCCCeeeeecCC
Q 047036          493 FSDKDGKTKTGFSGR  507 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh  507 (634)
                          +|+.+-.|.-.
T Consensus       505 ----tG~~lw~~~~~  515 (689)
T 1yiq_A          505 ----TGEKLWEQPAA  515 (689)
T ss_dssp             ----TCCEEEEEECS
T ss_pred             ----CCccceeeeCC
Confidence                78887666533

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.80  E-value=0.0011  Score=69.87  Aligned_cols=165  Identities=13%  Similarity=0.146  Sum_probs=96.5

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      .++|++.|+.+....    +++|.++| ++|+++.+ +....     + +.+.|++       ...+++.+.|+++.+||
T Consensus       132 ~spDG~~l~v~n~~~----~~~v~viD-~t~~~~~~~i~~~~-----~-~~~~~~~-------~~~~~~~~~dg~~~~vd  193 (373)
T 2mad_H          132 NTPNNADLLFFQFAA----GPAVGLVV-QGGSSDDQLLSSPT-----C-YHIHPGA-------PSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             ECCCCCEEEEEecCC----CCeEEEEE-CCCCEEeEEcCCCc-----e-EEEEeCC-------CceEEEEcCCCCEEEEE
Confidence            345555555443210    25799999 99999988 75432     2 2556663       24566777889999998


Q ss_pred             cCCCCceEEecc-----cCCCCccc------------c--ccccccc-----------c---------------CcceEE
Q 047036          392 MRDRSGIVQNMV-----KGDSPVLH------------W--TQGHQFS-----------R---------------GTNFQC  426 (634)
Q Consensus       392 ~R~~~~~Vq~l~-----gh~s~V~~------------~--~~g~~y~-----------~---------------~~~fss  426 (634)
                      . +++. +....     -...++..            +  ..++-++           .               ......
T Consensus       194 ~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  271 (373)
T 2mad_H          194 H-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ  271 (373)
T ss_pred             C-CCcE-EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence            8 5432 21110     00000000            0  0000000           0               001223


Q ss_pred             EEECCCC-eEEEEEC----------CCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEE-E-cCCcEEEEEcc
Q 047036          427 FASTGDG-SIVVGSL----------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILG-T-TDTYLILICTL  492 (634)
Q Consensus       427 va~s~dG-~IASGS~----------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlS-S-~D~tIrLWD~~  492 (634)
                      ++++++| +|.++..          .++|-++|..+++ ...+++ .+....+|.|||||+ .|++ . .+++|.+||+.
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~-vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE-EEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            6778887 6666543          4689999998864 556665 344679999999999 5666 3 48999999986


Q ss_pred             cccCCCCeeee
Q 047036          493 FSDKDGKTKTG  503 (634)
Q Consensus       493 ~~~~~G~~~~g  503 (634)
                          +++.+..
T Consensus       350 ----t~~vv~~  356 (373)
T 2mad_H          350 ----AGDQDQS  356 (373)
T ss_pred             ----CCCEEee
Confidence                5665543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.79  E-value=0.0022  Score=63.98  Aligned_cols=157  Identities=8%  Similarity=-0.001  Sum_probs=92.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC--CCcceeEEEEecCCCCCCCCCCCEEEEEeC-----
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK--DGTDITMRDITNDTKSSQLDPSESTFLGLD-----  383 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~--~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-----  383 (634)
                      +..+.+++++++. .       ..|++||+++|++..-.....  ....+.-++++|+        |++.++...     
T Consensus        59 i~~~~dG~l~v~~-~-------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d--------G~l~~~~~~~~~~~  122 (297)
T 3g4e_A           59 VALRQSGGYVATI-G-------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA--------GRYFAGTMAEETAP  122 (297)
T ss_dssp             EEEBTTSSEEEEE-T-------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT--------SCEEEEEEECCSBT
T ss_pred             EEECCCCCEEEEE-C-------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC--------CCEEEecCCccccc
Confidence            3445555655554 2       479999999987643332211  1111233477887        565554432     


Q ss_pred             ------CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEec--cccc
Q 047036          384 ------DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSK--TSMR  453 (634)
Q Consensus       384 ------D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~--~t~r  453 (634)
                            .+.|.++|+.  +.. ..+..+               -..-..++++++| .| ++.+.++.|.+||.  .++.
T Consensus       123 ~~~~~~~~~l~~~d~~--g~~-~~~~~~---------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~  184 (297)
T 3g4e_A          123 AVLERHQGALYSLFPD--HHV-KKYFDQ---------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ  184 (297)
T ss_dssp             TBCCTTCEEEEEECTT--SCE-EEEEEE---------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred             ccccCCCcEEEEEECC--CCE-EEEeec---------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence                  2356666654  222 222100               0112568899998 45 56677899999986  2321


Q ss_pred             ----cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          454 ----QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       454 ----~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                          +....++.+...+.+|++.++|+..++ ...+.|..||..    +|+.+..+.
T Consensus       185 ~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~----tG~~~~~i~  237 (297)
T 3g4e_A          185 ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV----TGKRLQTVK  237 (297)
T ss_dssp             EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT----TCCEEEEEE
T ss_pred             ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC----CceEEEEEE
Confidence                112234444456789999999998887 567889999963    476655443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.78  E-value=0.00065  Score=76.81  Aligned_cols=132  Identities=13%  Similarity=0.028  Sum_probs=87.4

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC--------------------------
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN--------------------------  385 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~--------------------------  385 (634)
                      +++|-+.|.+|.+++.+...-.+.   .-++++|+        |..+++.+.+.                          
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~p---d~~~~spd--------Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNL---DNCDADYE--------GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCC---CCEEECSS--------SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             CceEEEEECCCCeEEEEEEeCCCc---cceEECCC--------CCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence            368999999999999998753332   23589998        45677776542                          


Q ss_pred             ------------eEEEEEcCC--CCceEEecccCCCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEec
Q 047036          386 ------------RLCQWDMRD--RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSK  449 (634)
Q Consensus       386 ------------tIklWD~R~--~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~  449 (634)
                                  .|.+.|+++  +...+..+.                ....-.++.++||| + ++++-.+++|.++|.
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip----------------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~  306 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP----------------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  306 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE----------------EESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEe----------------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence                        356666654  211122221                11123467899999 4 556678999999998


Q ss_pred             ccccc-----------ccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          450 TSMRQ-----------AKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       450 ~t~r~-----------akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                      .+.+.           ....+ ..+..-.+++|+||| ++.+  -.|+.|..||+.
T Consensus       307 ~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          307 TRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             GGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             cccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhh
Confidence            76420           11222 244567999999999 6655  459999999975

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.78  E-value=0.00011  Score=83.08  Aligned_cols=108  Identities=11%  Similarity=0.063  Sum_probs=72.5

Q ss_pred             eEEEEecCCCCCCCCCCCEEE-----EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC
Q 047036          359 TMRDITNDTKSSQLDPSESTF-----LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG  433 (634)
Q Consensus       359 ~vvsfsPd~K~~q~~~g~~la-----SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG  433 (634)
                      ...+||||        |+.||     .|+...+|++||+.++..+...+.                 ...+.+++++ ||
T Consensus       132 ~~~~~SpD--------g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-----------------~~k~~~~~Ws-Dg  185 (693)
T 3iuj_A          132 DQLSFSRD--------GRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-----------------DVKFSGISWL-GN  185 (693)
T ss_dssp             EEEEECTT--------SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-----------------EEESCCCEEE-TT
T ss_pred             EEEEECCC--------CCEEEEEEecCCCceEEEEEEECCCCCCCccccC-----------------CceeccEEEe-CC
Confidence            44589999        56666     344457899999998753211121                 1123456778 88


Q ss_pred             -eEEEEECCCc-------------EEEEecccccc---ccccccC-CCCCeEEEEECCCCCEEEE-Ec----CCcEEEEE
Q 047036          434 -SIVVGSLDGK-------------IRLYSKTSMRQ---AKTAFPG-LGSPITHVDVTYDGKWILG-TT----DTYLILIC  490 (634)
Q Consensus       434 -~IASGS~DGt-------------IRLWD~~t~r~---akt~L~G-H~d~ItsVdfSpDGk~LlS-S~----D~tIrLWD  490 (634)
                       .|+.++.+..             |++|++.+...   .....++ |...+.++.+||||++|+. +.    .+.|.+||
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence             7999988854             99999876421   1223344 5566899999999999975 32    25899999


Q ss_pred             cc
Q 047036          491 TL  492 (634)
Q Consensus       491 ~~  492 (634)
                      +.
T Consensus       266 ~~  267 (693)
T 3iuj_A          266 LS  267 (693)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.74  E-value=0.0012  Score=72.59  Aligned_cols=138  Identities=14%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCccee-EEEEecCCCCCCCCCCCEEEEEe-------------------CCCeEEEEEc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDIT-MRDITNDTKSSQLDPSESTFLGL-------------------DDNRLCQWDM  392 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~-vvsfsPd~K~~q~~~g~~laSGS-------------------~D~tIklWD~  392 (634)
                      +.|.+.|.+|++++.+|........+. -..|+|+        ++.+++..                   ..++|.+||+
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~--------~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLP--------NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETT--------TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCC--------CCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            689999999999999997332211111 1256898        56666663                   4899999999


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEE--EEECCCC-eEEEEE------CCCcEEEEeccccc----c-----
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQC--FASTGDG-SIVVGS------LDGKIRLYSKTSMR----Q-----  454 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fss--va~s~dG-~IASGS------~DGtIRLWD~~t~r----~-----  454 (634)
                      .++ ++++++.-          +..   ...-..  ++++|+| ++.+++      .+++|-+|....++    +     
T Consensus       236 ~~~-k~~~tI~v----------g~~---g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~  301 (462)
T 2ece_A          236 RKR-KRIHSLTL----------GEE---NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP  301 (462)
T ss_dssp             TTT-EEEEEEES----------CTT---EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCC-cEeeEEec----------CCC---CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence            875 55666531          000   000112  3459998 555555      67788765532210    0     


Q ss_pred             ---cccccc-------CCCCCeEEEEECCCCCEEEEEc--CCcEEEEEcc
Q 047036          455 ---AKTAFP-------GLGSPITHVDVTYDGKWILGTT--DTYLILICTL  492 (634)
Q Consensus       455 ---akt~L~-------GH~d~ItsVdfSpDGk~LlSS~--D~tIrLWD~~  492 (634)
                         ...+++       +.+..+..|.+||||++|..|+  .+.|.++|+.
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence               111121       1134578999999999998744  6899999975

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.71  E-value=0.0032  Score=62.09  Aligned_cols=125  Identities=18%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|+.+|.. |+.+..+..+...+  ....+.++         ..++.|+.++.|.++|+. +. .+..+...       
T Consensus       117 ~~l~~~d~~-g~~~~~~~~~~~~~--~~~~~~~~---------g~l~vgt~~~~l~~~d~~-g~-~~~~~~~~-------  175 (330)
T 3hxj_A          117 GHLYAINTD-GTEKWRFKTKKAIY--ATPIVSED---------GTIYVGSNDNYLYAINPD-GT-EKWRFKTN-------  175 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCC--SCCEECTT---------SCEEEECTTSEEEEECTT-SC-EEEEEECS-------
T ss_pred             CEEEEEcCC-CCEEEEEcCCCcee--eeeEEcCC---------CEEEEEcCCCEEEEECCC-CC-EeEEEecC-------
Confidence            579999999 99888777665433  22244443         358889999999999998 43 33333211       


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                              ...+.+++..++|.|.+|+  +.|..|| .+++ ....+......|.++.+.++|+..+++.++.|..+|
T Consensus       176 --------~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~  241 (330)
T 3hxj_A          176 --------DAITSAASIGKDGTIYFGS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN  241 (330)
T ss_dssp             --------SCCCSCCEECTTCCEEEES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC
T ss_pred             --------CCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc-EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC
Confidence                    1123445667788888888  8899999 4443 333444445678999999999988888888888887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.66  E-value=0.0038  Score=63.76  Aligned_cols=132  Identities=11%  Similarity=0.032  Sum_probs=74.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCc---------------------------ceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGT---------------------------DITMRDITNDTKSSQLDPSESTFLGLDDN  385 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V---------------------------~I~vvsfsPd~K~~q~~~g~~laSGS~D~  385 (634)
                      +.|++||+.+|+..+.+.+|....                           .+.-++|+|+        ++.|+.+...+
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d--------g~~ly~~~~~~  216 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE--------NEWLYLSPMHS  216 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT--------SCEEEEEESSC
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccC--------CCEEEEEeCCC
Confidence            689999999999988876642110                           0122477887        55666665554


Q ss_pred             -eEEEEEcCCC--CceE-EecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEecccccccccccc
Q 047036          386 -RLCQWDMRDR--SGIV-QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSMRQAKTAFP  460 (634)
Q Consensus       386 -tIklWD~R~~--~~~V-q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~r~akt~L~  460 (634)
                       .|..+|....  ..+- ..+.   ..+..  .++    ...-..++++++|. +++...++.|++||..+++ ..+...
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~---~~~~~--~g~----~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~  286 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELG---SKIER--YSE----KPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVT  286 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHH---TTCEE--EEE----CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEE
T ss_pred             CeEEEEEHHHhcCCCCChhhhh---cceEe--ccc----CCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEE
Confidence             6666664310  0000 0000   00000  000    00123468888995 5666778999999983333 322222


Q ss_pred             -CCCCCeEEEEECCCCCEEEEEc
Q 047036          461 -GLGSPITHVDVTYDGKWILGTT  482 (634)
Q Consensus       461 -GH~d~ItsVdfSpDGk~LlSS~  482 (634)
                       .+...+++|+|++||+.++++.
T Consensus       287 ~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          287 DEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             CGGGSCEEEEEECTTSCEEEEEC
T ss_pred             CCceecCCeeEECCCCcEEEEeC
Confidence             1345689999999998777743

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.65  E-value=0.0069  Score=59.70  Aligned_cols=140  Identities=17%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      +.+.++++++.+..       +.|+.+|.. |+.+..+..+...+  ....+.++         ..++.|+  +.|.++|
T Consensus       143 ~~~~~g~l~vgt~~-------~~l~~~d~~-g~~~~~~~~~~~~~--~~~~~d~~---------g~l~v~t--~~l~~~d  201 (330)
T 3hxj_A          143 IVSEDGTIYVGSND-------NYLYAINPD-GTEKWRFKTNDAIT--SAASIGKD---------GTIYFGS--DKVYAIN  201 (330)
T ss_dssp             EECTTSCEEEECTT-------SEEEEECTT-SCEEEEEECSSCCC--SCCEECTT---------CCEEEES--SSEEEEC
T ss_pred             EEcCCCEEEEEcCC-------CEEEEECCC-CCEeEEEecCCCce--eeeEEcCC---------CEEEEEe--CEEEEEC
Confidence            34556665555432       579999999 99988887665443  22244443         3466666  8999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                       +.+.. +..+..               ....+.+++..++|.|.+|+.++.|..+|..+ + ....++.....+.++.+
T Consensus       202 -~~g~~-~~~~~~---------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-~-~~~~~~~~~~~~~~~~~  262 (330)
T 3hxj_A          202 -PDGTE-KWNFYA---------------GYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-T-EKWRFKTGKRIESSPVI  262 (330)
T ss_dssp             -TTSCE-EEEECC---------------SSCCCSCCEECTTSCEEEEETTTEEEEECTTS-C-EEEEEECSSCCCSCCEE
T ss_pred             -CCCcE-EEEEcc---------------CCcceeceEECCCCeEEEEcCCCeEEEECCCC-C-EeEEeeCCCCccccceE
Confidence             54432 222210               11224566778889999999999999998644 2 33344434444566778


Q ss_pred             CCCCCEEEEEcCCcEEEEEc
Q 047036          472 TYDGKWILGTTDTYLILICT  491 (634)
Q Consensus       472 SpDGk~LlSS~D~tIrLWD~  491 (634)
                      .++|+..+++.++.|..+|.
T Consensus       263 ~~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          263 GNTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CTTSCEEEECTTCEEEEECT
T ss_pred             cCCCeEEEecCCCCEEEECC
Confidence            88998877788888998883

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.63  E-value=0.017  Score=58.65  Aligned_cols=140  Identities=12%  Similarity=0.106  Sum_probs=81.3

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQ  389 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIkl  389 (634)
                      +..+.++++++++..+......+.|+.+|  +|++.. +..+....  ..++|+|+        ++.+ ++.+.++.|.+
T Consensus       139 i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~--~~i~~s~d--------g~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          139 GRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP--NSICFSPD--------GTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             EEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE--EEEEECTT--------SCEEEEEETTTCEEEE
T ss_pred             EEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc--CCeEEcCC--------CCEEEEEECCCCEEEE
Confidence            33455555555443211001124677777  576544 33332222  34589998        4544 55566899999


Q ss_pred             EEcC--CC-C----ceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEeccccccccccccC
Q 047036          390 WDMR--DR-S----GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFPG  461 (634)
Q Consensus       390 WD~R--~~-~----~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~G  461 (634)
                      ||+.  ++ .    ..+..+..               .......++++++|.|.++. ..+.|.+||..+ + ....+..
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~~---------------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g-~-~~~~i~~  268 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDSTG---------------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-N-HIARYEV  268 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTT---------------SSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-C-EEEEEEC
T ss_pred             EEcccccCCcccCceEEEECCC---------------CCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC-C-EEEEEEC
Confidence            9986  33 1    11111110               01123567889999665554 568999999843 3 4455555


Q ss_pred             CCCCeEEEEEC-CCCCEEEE
Q 047036          462 LGSPITHVDVT-YDGKWILG  480 (634)
Q Consensus       462 H~d~ItsVdfS-pDGk~LlS  480 (634)
                      +...|++++|+ |||+.|..
T Consensus       269 ~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEE
T ss_pred             CCCCcEEEEEecCCCCEEEE
Confidence            56679999999 99988755

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.61  E-value=0.0019  Score=68.01  Aligned_cols=131  Identities=10%  Similarity=-0.027  Sum_probs=84.6

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----------CCCeEEEEEcCCCCceEEecc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----------DDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----------~D~tIklWD~R~~~~~Vq~l~  403 (634)
                      +|.++|+.+|+++.++......   . +.|+||        +..++.+.          .+++|.+||+.+.. ++..+.
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p---~-i~~spD--------g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-~~~~i~  114 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP---N-PVAAHS--------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFL-PIADIE  114 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC---C-eEECCC--------CCEEEEEeccccccccCCCCCeEEEEECCCCc-EEEEEE
Confidence            8999999999999998764432   2 489999        56677765          47899999998653 344432


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEEC--CCcEEEEecccccccccc-ccCCCCCeEEEEECCCCCEE-
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL--DGKIRLYSKTSMRQAKTA-FPGLGSPITHVDVTYDGKWI-  478 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~--DGtIRLWD~~t~r~akt~-L~GH~d~ItsVdfSpDGk~L-  478 (634)
                      --..        ........-..++++||| +|++++.  ++.|.++| .+++ .... ++ ...   ++.+.|+|+.+ 
T Consensus       115 ~~~~--------~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~-~~~---~~~~~~~~~~~~  180 (373)
T 2mad_H          115 LPDA--------PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLS-SPT---CYHIHPGAPSTF  180 (373)
T ss_pred             CCCc--------cccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcC-CCc---eEEEEeCCCceE
Confidence            0000        000000111356889999 7888774  58899999 8864 5555 54 222   24566776433 


Q ss_pred             EE-EcCCcEEEEEc
Q 047036          479 LG-TTDTYLILICT  491 (634)
Q Consensus       479 lS-S~D~tIrLWD~  491 (634)
                      ++ +.|+.+.+||.
T Consensus       181 ~~~~~dg~~~~vd~  194 (373)
T 2mad_H          181 YLLCAQGGLAKTDH  194 (373)
T ss_pred             EEEcCCCCEEEEEC
Confidence            33 66788888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.38  E-value=0.0093  Score=60.86  Aligned_cols=140  Identities=15%  Similarity=0.160  Sum_probs=83.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcc--e-eE--EEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTD--I-TM--RDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~--I-~v--vsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                      +.|+.+|+.+|+++.++......-.  + .+  +..+|-     + .+..++.++.++.|..+|+++++. +....    
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~-----~-~~~~v~~~~~~g~l~~~d~~tG~~-~w~~~----  266 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV-----V-VNGVVFALAYNGNLTALDLRSGQI-MWKRE----  266 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCE-----E-ETTEEEEECTTSCEEEEETTTCCE-EEEEC----
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE-----E-ECCEEEEEecCcEEEEEECCCCcE-Eeecc----
Confidence            6899999999999887764321000  0 00  001111     0 035889999999999999998653 22221    


Q ss_pred             CccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCC-CCCeEEEEECCCCCEEEEEcCCcE
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGL-GSPITHVDVTYDGKWILGTTDTYL  486 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH-~d~ItsVdfSpDGk~LlSS~D~tI  486 (634)
                                  . ....+++. .++.|.+++.+|.|..+|..+++ .+-..+.. ...+.+..+. +|+.++.+.++.|
T Consensus       267 ------------~-~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l  330 (376)
T 3q7m_A          267 ------------L-GSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV-TLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYL  330 (376)
T ss_dssp             ------------C-CCEEEEEE-ETTEEEEEETTCCEEEEETTTCC-EEEEECTTTTSCCCCCEEE-TTEEEEECTTSEE
T ss_pred             ------------C-CCCCCceE-ECCEEEEEcCCCeEEEEECCCCc-EEEeecccCCCcccCCEEE-CCEEEEEeCCCeE
Confidence                        0 01223333 36689999999999999998874 33333311 1222233332 4444444889999


Q ss_pred             EEEEcccccCCCCeeee
Q 047036          487 ILICTLFSDKDGKTKTG  503 (634)
Q Consensus       487 rLWD~~~~~~~G~~~~g  503 (634)
                      ..+|..    +|+.+..
T Consensus       331 ~~~d~~----tG~~~~~  343 (376)
T 3q7m_A          331 HWINVE----DGRFVAQ  343 (376)
T ss_dssp             EEEETT----TCCEEEE
T ss_pred             EEEECC----CCcEEEE
Confidence            999975    5665443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.38  E-value=0.0061  Score=62.22  Aligned_cols=153  Identities=13%  Similarity=0.098  Sum_probs=93.6

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      +++.++++++...    +++|+..|++||++++++.-.....   ...+++++       +.+.++.-.+++|.++|+.+
T Consensus        30 ~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~f---geGi~~~g-------~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           30 ENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYF---GEGLTLLN-------EKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             STTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCC---EEEEEEET-------TEEEEEETTCSEEEEEETTT
T ss_pred             CCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcc---eEEEEEeC-------CEEEEEEecCCEEEEEECCC
Confidence            3344455554321    2689999999999999976433211   12344441       23444555689999999987


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-C-CCC---CeEE
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-G-LGS---PITH  468 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-G-H~d---~Its  468 (634)
                      .+ ++.++.-- .+             ..   ...++|| +|+++..+++|.++|..+.+ ....++ + ++.   .++.
T Consensus        96 ~~-v~~~i~~g-~~-------------~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           96 LS-NIKNFTHQ-MK-------------DG---WGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             TE-EEEEEECC-SS-------------SC---CEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEE
T ss_pred             Cc-EEEEEECC-CC-------------Ce---EEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECCCCccccccee
Confidence            54 45555310 00             00   1233455 67777788999999998864 444443 2 222   3678


Q ss_pred             EEECCCCCEEEEE-cCCcEEEEEcccccCCCCeeeeec
Q 047036          469 VDVTYDGKWILGT-TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       469 VdfSpDGk~LlSS-~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +.|. ||+..++. .+++|.++|+.    +|+.+..+.
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~----tg~V~~~I~  189 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAK----DGTLLGWIL  189 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETT----TCCEEEEEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECC----CCcEEEEEE
Confidence            8888 88544454 57899999985    676655443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.34  E-value=0.029  Score=57.18  Aligned_cols=188  Identities=13%  Similarity=0.052  Sum_probs=111.6

Q ss_pred             EEEeeeCC-CeEEEec----CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          258 SLTLGALD-NSFLVSD----LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       258 ~LavG~~D-~sfvv~G----~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      -|++. +| +-|+..|    ++|.++....+.+..   .+.+..       ...+.+..+. + ..+.+++-. +     
T Consensus        25 Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~---~i~l~~-------~~fgeGi~~~-g-~~lyv~t~~-~-----   85 (266)
T 2iwa_A           25 GLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVEN---IHKMDD-------SYFGEGLTLL-N-EKLYQVVWL-K-----   85 (266)
T ss_dssp             EEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEE---EEECCT-------TCCEEEEEEE-T-TEEEEEETT-C-----
T ss_pred             cEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEE---EEecCC-------CcceEEEEEe-C-CEEEEEEec-C-----
Confidence            45443 43 4455554    689888876654221   111211       1122333332 2 234444433 2     


Q ss_pred             CcEEEEeCCCCcEEEEEecc-CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc-cC-CCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFE-KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV-KG-DSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH-~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~-gh-~s~V  409 (634)
                      ++|.++|+.|++++.++... ..+    . .++||        +..++.+..+++|.++|+++.+ ++..+. +. ..++
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g----~-glt~D--------g~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDG----W-GLATD--------GKILYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRV  151 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSC----C-EEEEC--------SSSEEEECSSSEEEEECTTTCC-EEEEEECEETTEEC
T ss_pred             CEEEEEECCCCcEEEEEECCCCCe----E-EEEEC--------CCEEEEECCCCeEEEEECCCCc-EEEEEEECCCCccc
Confidence            69999999999999999644 222    2 57788        3445555678999999999854 344442 10 0010


Q ss_pred             cccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEecccccccccccc--CC-----------CCCeEEEEECCCC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFP--GL-----------GSPITHVDVTYDG  475 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~--GH-----------~d~ItsVdfSpDG  475 (634)
                                  .....+.+. +|+|.+.. .+++|.+-|..+++ ....++  |.           .+...+|+|+|+|
T Consensus       152 ------------~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~-V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~  217 (266)
T 2iwa_A          152 ------------IRLNELEYI-NGEVWANIWQTDCIARISAKDGT-LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN  217 (266)
T ss_dssp             ------------CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC-EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred             ------------ccceeEEEE-CCEEEEecCCCCeEEEEECCCCc-EEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence                        012344455 67766655 57899999998874 444433  21           1356899999999


Q ss_pred             CEEEEEc--CCcEEEEEcc
Q 047036          476 KWILGTT--DTYLILICTL  492 (634)
Q Consensus       476 k~LlSS~--D~tIrLWD~~  492 (634)
                      +.|..+.  ..+|...++.
T Consensus       218 ~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          218 KRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             TEEEEEETTCSEEEEEEEE
T ss_pred             CEEEEECCCCCeEEEEEEe
Confidence            9887643  5778777765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.33  E-value=0.0023  Score=72.82  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc-CCC
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP-GLG  463 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~-GH~  463 (634)
                      ++|..||+++++ ++-.+. +..++              ......+.++.|++|+.||.+++||..+++ .+..+. +++
T Consensus       457 g~l~A~D~~tG~-~~W~~~-~~~~~--------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~~  519 (677)
T 1kb0_A          457 GRLLAWDPVAQK-AAWSVE-HVSPW--------------NGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAPTGTG  519 (677)
T ss_dssp             EEEEEEETTTTE-EEEEEE-ESSSC--------------CCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSC
T ss_pred             cEEEEEeCCCCc-EEeecC-CCCCC--------------cCcceEeCCCEEEEECCCCcEEEEECCCCc-eeeeeeCCCC
Confidence            789999998864 333332 11110              112223456789999999999999999875 554443 343


Q ss_pred             CCeEEEEECCCCCEEEE
Q 047036          464 SPITHVDVTYDGKWILG  480 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS  480 (634)
                      ..-.-+.+++||+..++
T Consensus       520 ~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cccCCEEEEeCCEEEEE
Confidence            33344667899986665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.32  E-value=0.37  Score=54.82  Aligned_cols=152  Identities=13%  Similarity=0.176  Sum_probs=97.0

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc--------CCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE--------KDGTDITMRDITNDTKSSQLDPSESTF  379 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH--------~~~V~I~vvsfsPd~K~~q~~~g~~la  379 (634)
                      ...++.+.++++-+....       +-|.+||..+++...-....        .+.    |.++..|.+      +..|.
T Consensus       359 V~~i~~d~~g~lWiGt~~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~----v~~i~~d~~------g~~lW  421 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTND-------GGLNLYNPITQRFTSYTLQEDESARGIGSNN----IKAVYVDEK------KSLVY  421 (795)
T ss_dssp             EEEEEECTTSCEEEEESS-------SCEEEECTTTCCEEEECCC------CCSCSC----EEEEEEETT------TTEEE
T ss_pred             eEEEEECCCCCEEEEECC-------CCeEEEcCCCCcEEEEecCCCCcccCCCCcc----EEEEEEcCC------CCEEE
Confidence            445666677776665433       35999999988765432211        122    234443311      44488


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      .|+.++.|.++|++++.  ++.+......          .....+.+++..++|.|-+|+. +-|.+||..+.+ .. .+
T Consensus       422 igt~~~Gl~~~d~~~~~--~~~~~~~~~~----------l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~-~~  486 (795)
T 4a2l_A          422 IGTHAGGLSILHRNSGQ--VENFNQRNSQ----------LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS-FT-TI  486 (795)
T ss_dssp             EEETTTEEEEEETTTCC--EEEECTTTSC----------CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE-EE-EC
T ss_pred             EEeCcCceeEEeCCCCc--EEEeecCCCC----------cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe-EE-Ec
Confidence            89999999999998754  2333210000          1233578888888898888888 457889976642 22 22


Q ss_pred             c------C-CCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          460 P------G-LGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       460 ~------G-H~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      .      + ....|.+|...++|+..+++. +-|.+||..
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~  525 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQE  525 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEE
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCC
Confidence            1      1 246899999999999888877 678888854

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.24  E-value=0.0017  Score=74.07  Aligned_cols=80  Identities=19%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc-CC
Q 047036          384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP-GL  462 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~-GH  462 (634)
                      +++|..||+++++ ++-.+..+..               .......+.+|.|++|+.||.||+||..+++ .+-.+. ++
T Consensus       454 ~g~l~A~D~~tG~-~~W~~~~~~~---------------~~~g~~~tagglvf~gt~dg~l~a~D~~tG~-~lw~~~~~~  516 (689)
T 1yiq_A          454 SGKLIAWDPVKQQ-AAWEVPYVTI---------------FNGGTLSTAGNLVFEGSADGRVIAYAADTGE-KLWEQPAAS  516 (689)
T ss_dssp             EEEEEEEETTTTE-EEEEEEESSS---------------CCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSS
T ss_pred             ceeEEEEECCCCC-eEeEccCCCC---------------ccCccceECCCEEEEECCCCcEEEEECCCCc-cceeeeCCC
Confidence            3789999998864 3333321111               0112233567799999999999999999885 444443 23


Q ss_pred             CCCeEEEEECCCCCEEEE
Q 047036          463 GSPITHVDVTYDGKWILG  480 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS  480 (634)
                      +..-.-+.|+.||+..++
T Consensus       517 ~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          517 GVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CCCSCCEEEEETTEEEEE
T ss_pred             CcccCceEEEECCEEEEE
Confidence            322234677899986665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.23  E-value=0.0055  Score=65.78  Aligned_cols=130  Identities=11%  Similarity=-0.000  Sum_probs=80.4

Q ss_pred             CcEEEEeCCCCcEEEEEeccC-------CCcceeEEEEecCCCCCCCCCCCEEEEEeC--CCeEEEEEcCCCCceEEecc
Q 047036          333 PGVQQLDIETGKIVTEWKFEK-------DGTDITMRDITNDTKSSQLDPSESTFLGLD--DNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~-------~~V~I~vvsfsPd~K~~q~~~g~~laSGS~--D~tIklWD~R~~~~~Vq~l~  403 (634)
                      ++|.+||+.|++++.++....       .. + ..+.|+||        |..++.+..  +++|-++|+.+++ ++.++.
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~-P-~~~a~spD--------Gk~lyVan~~~~~~VsVID~~t~~-vv~tI~  177 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTY-P-WMTSLTPD--------GKTLLFYQFSPAPAVGVVDLEGKA-FKRMLD  177 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCC-G-GGEEECTT--------SSEEEEEECSSSCEEEEEETTTTE-EEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCC-C-ceEEEcCC--------CCEEEEEEcCCCCeEEEEECCCCc-EEEEEE
Confidence            589999999999999986421       01 1 23499999        566776653  7999999999864 556552


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc-ccccc----ccccCCCCCeE-EEEE-CCCC
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-MRQAK----TAFPGLGSPIT-HVDV-TYDG  475 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-~r~ak----t~L~GH~d~It-sVdf-SpDG  475 (634)
                      -                  +-....++.+. .+++.+.||++-+.++.. ++ ..    ..+.--..+|. ...| ++||
T Consensus       178 v------------------~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~-v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          178 V------------------PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT-PEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             C------------------CSEEEEEEEETTEEEEEETTSCEEEEECCSSSC-CEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             C------------------CCcceeecCCCceeEEECCCCCEEEEECCCCCe-EEEeecceeccccccccccceeEcCCC
Confidence            0                  00011222222 455666777776666643 22 11    11111123332 2455 5899


Q ss_pred             CEEEEEcCCcEEEEEcc
Q 047036          476 KWILGTTDTYLILICTL  492 (634)
Q Consensus       476 k~LlSS~D~tIrLWD~~  492 (634)
                      +++..|.+++|.+.|+.
T Consensus       239 ~~~~vs~~g~V~v~d~~  255 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLS  255 (386)
T ss_dssp             EEEEEBTTSEEEEEECT
T ss_pred             cEEEEeCCCEEEEEECC
Confidence            88778888999999964

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.22  E-value=0.0044  Score=63.39  Aligned_cols=150  Identities=13%  Similarity=0.197  Sum_probs=94.8

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEcCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDMRD  394 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~R~  394 (634)
                      +..++.+++.+.    ..+|+..|++||++++++.......   -..++++        +..|+.. -.++++.++|+.+
T Consensus        52 ~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~F---geGit~~--------g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           52 NGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYF---GEGISDW--------KDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             TTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCC---EEEEEEE--------TTEEEEEESSSSEEEEEETTT
T ss_pred             CCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccc---eeEEEEe--------CCEEEEEEeeCCEEEEEECcc
Confidence            445666666542    2489999999999999987654321   1234554        3455544 4589999999998


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCC---eEE
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSP---ITH  468 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~---Its  468 (634)
                      .+ ++.++.-...                  ..+.+++| .|++....+.|+++|..+.+ ...+++  ..+.+   ++.
T Consensus       117 ~~-~~~ti~~~~e------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          117 LR-QVRSFNYDGE------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             CC-EEEEEECSSC------------------CCCEEECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEECCCEEE
T ss_pred             Cc-EEEEEECCCC------------------ceEEecCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCccccccce
Confidence            65 4566531000                  01122344 67766668899999998864 444333  23334   455


Q ss_pred             EEECCCCCEEEEE-cCCcEEEEEcccccCCCCeeeeec
Q 047036          469 VDVTYDGKWILGT-TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       469 VdfSpDGk~LlSS-~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +.+. +|+..+.. .++.|.++|..    +|+.+..+.
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~----tG~V~~~Id  209 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPE----TGKVTGIID  209 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTT----TCBEEEEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECC----CCcEEEEEE
Confidence            7776 88755554 68899999975    677665443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.20  E-value=0.0022  Score=65.58  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=80.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|+.+|+.+|+++.+.....  .  .  ....+        +..++.++.++.|..+|+++++. +-.......     
T Consensus       249 g~l~~~d~~tG~~~w~~~~~~--~--~--~~~~~--------~~~l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~-----  308 (376)
T 3q7m_A          249 GNLTALDLRSGQIMWKRELGS--V--N--DFIVD--------GNRIYLVDQNDRVMALTIDGGVT-LWTQSDLLH-----  308 (376)
T ss_dssp             SCEEEEETTTCCEEEEECCCC--E--E--EEEEE--------TTEEEEEETTCCEEEEETTTCCE-EEEECTTTT-----
T ss_pred             cEEEEEECCCCcEEeeccCCC--C--C--CceEE--------CCEEEEEcCCCeEEEEECCCCcE-EEeecccCC-----
Confidence            579999999999886654322  1  1  22222        46899999999999999998753 222210000     


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                               ..+.+.+. .++.|++++.+|.|.+||..+++ .+..++..+..+.+.-+-.+|+.++.+.++.|..|+
T Consensus       309 ---------~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~-~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          309 ---------RLLTSPVL-YNGNLVVGDSEGYLHWINVEDGR-FVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ---------SCCCCCEE-ETTEEEEECTTSEEEEEETTTCC-EEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             ---------CcccCCEE-ECCEEEEEeCCCeEEEEECCCCc-EEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence                     00111111 25799999999999999988874 444444333444432223466666668899998887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.11  E-value=0.011  Score=63.97  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             EEECCCC-eEEEEEC----------CCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEEEc--CCcEEEEEcc
Q 047036          427 FASTGDG-SIVVGSL----------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILGTT--DTYLILICTL  492 (634)
Q Consensus       427 va~s~dG-~IASGS~----------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlSS~--D~tIrLWD~~  492 (634)
                      ++++++| +|+++..          .++|-+.|..+.+ ...+++ .+....+|.|+|||+ .|++++  +++|-++|+.
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k-vv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE-RINKIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe-EEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            5778886 6655532          4589999998864 555665 233579999999999 777744  8999999986


Q ss_pred             cccCCCCeeeee
Q 047036          493 FSDKDGKTKTGF  504 (634)
Q Consensus       493 ~~~~~G~~~~gF  504 (634)
                          +++.+..+
T Consensus       402 ----t~kvv~tI  409 (426)
T 3c75_H          402 ----TGEELRSV  409 (426)
T ss_dssp             ----TCCEEEEE
T ss_pred             ----CCCEEEEe
Confidence                67766655

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.10  E-value=0.0012  Score=74.73  Aligned_cols=158  Identities=15%  Similarity=0.108  Sum_probs=98.5

Q ss_pred             cEEEEeCCC--CcE-EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-----------ceE
Q 047036          334 GVQQLDIET--GKI-VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-----------GIV  399 (634)
Q Consensus       334 TIrlWDleT--GK~-V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-----------~~V  399 (634)
                      .|.+.|..+  |++ ++........   ..+.|+||+|+       .++++..+++|.++|+++..           +++
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~P---hGv~~sPDGk~-------v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNP---HGCNMAPDKKH-------LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSC---CCEEECTTSSE-------EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             cEEEEeCcccCCceeEEEEecCCCc---eEEEEcCCCCE-------EEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence            599999999  777 7777654432   23599999653       67777889999999998531           111


Q ss_pred             EecccCCCCccccccccccccCcceEEEEECCCCeE-EEEECCCcEEEEecccc---------ccccccccCCCCCe---
Q 047036          400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI-VVGSLDGKIRLYSKTSM---------RQAKTAFPGLGSPI---  466 (634)
Q Consensus       400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I-ASGS~DGtIRLWD~~t~---------r~akt~L~GH~d~I---  466 (634)
                      ..+.                .+..-..++|+++|++ ++.-.|++|-.||....         .+...+++-|-.|-   
T Consensus       325 ~~v~----------------vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          325 AEPE----------------LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             ECCB----------------CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             EEcC----------------CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence            1211                1122345689999964 45679999999997651         12334455443332   


Q ss_pred             --EEEEECCCCCEEEEEc----CCcE----------EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036          467 --THVDVTYDGKWILGTT----DTYL----------ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD  524 (634)
Q Consensus       467 --tsVdfSpDGk~LlSS~----D~tI----------rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~  524 (634)
                        .++.++|||+||++++    |..|          .|+|+.    .++...-.....+   +-||-..|.|.+
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis----~~~m~lv~d~p~~---~ePh~~~i~~~~  455 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS----GDKMVLVHDGPTF---AEPHDAIAVHPS  455 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS----SSSCEEEEEEEES---SCCCCEEEECTT
T ss_pred             eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC----CCcEEEEEEEcCC---CCCCceEEccHH
Confidence              3456789999999854    4332          789973    3444333333332   445666655544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.07  E-value=0.019  Score=58.07  Aligned_cols=151  Identities=11%  Similarity=0.125  Sum_probs=93.6

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      ..++.+++.+.    ..+|+..|++||+++++........  . ..+++.+       +.+..+.-.+++++++|+.+.+
T Consensus        31 ~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~f--g-eGi~~~~-------~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           31 GHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYF--G-AGIVAWR-------DRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCC--E-EEEEEET-------TEEEEEESSSSEEEEEETTTTE
T ss_pred             CEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcc--e-eEEEEeC-------CEEEEEEeeCCEEEEEECCcCc
Confidence            45566666542    2589999999999999987654421  1 1334431       2344455568999999998864


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc--CCCC---CeEEEEE
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGS---PITHVDV  471 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d---~ItsVdf  471 (634)
                       ++.++....               .. ..++ ..+++|+++..+++|.++|..+.+ ...+++  .++.   .++.|.+
T Consensus        97 -~~~ti~~~~---------------~G-wglt-~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           97 -PRARFRYPG---------------EG-WALT-SDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             -EEEEEECSS---------------CC-CEEE-ECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEE
T ss_pred             -EEEEEeCCC---------------Cc-eEEe-eCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCcccccceeeEE
Confidence             456653110               01 1222 223467777779999999998864 333333  2333   3455665


Q ss_pred             CCCCCEEEEE-cCCcEEEEEcccccCCCCeeeeec
Q 047036          472 TYDGKWILGT-TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       472 SpDGk~LlSS-~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      . +|+..+.. .++.|.++|..    +|+.+..+.
T Consensus       158 ~-~G~lyanvw~s~~I~vIDp~----tG~V~~~id  187 (243)
T 3mbr_X          158 V-NGELLANVWLTSRIARIDPA----SGKVVAWID  187 (243)
T ss_dssp             E-TTEEEEEETTTTEEEEECTT----TCBEEEEEE
T ss_pred             e-CCEEEEEECCCCeEEEEECC----CCCEEEEEE
Confidence            5 77755554 58899999976    677655443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.06  E-value=0.055  Score=55.25  Aligned_cols=134  Identities=11%  Similarity=0.122  Sum_probs=86.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +++.++|++|++++.++.....+.     .+++|        +..|+.....++|.++|+.+.+ ++.++.-.       
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~eG~-----glt~d--------g~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~-------  165 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGEGW-----GLTHN--------DQYLIMSDGTPVLRFLDPESLT-PVRTITVT-------  165 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCC-----CEEEC--------SSCEEECCSSSEEEEECTTTCS-EEEEEECE-------
T ss_pred             CEEEEEECccCcEEEEEECCCCce-----EEecC--------CCEEEEECCCCeEEEEcCCCCe-EEEEEEec-------
Confidence            689999999999999998655432     45566        3455555557899999999864 34444210       


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEeccccccccccc--cCC----------CCCeEEEEECCCCCEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAF--PGL----------GSPITHVDVTYDGKWIL  479 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L--~GH----------~d~ItsVdfSpDGk~Ll  479 (634)
                      ..++.. .  .+.-+.+. +|+|.++. .+++|.+-|..+++ ....+  .++          .+--++|+++|+++.|.
T Consensus       166 ~~g~~~-~--~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          166 AHGEEL-P--ELNELEWV-DGEIFANVWQTNKIVRIDPETGK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             ETTEEC-C--CEEEEEEE-TTEEEEEETTSSEEEEECTTTCB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             cCCccc-c--ccceeEEE-CCEEEEEEccCCeEEEEECCCCc-EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence            001110 0  11222333 67776666 58899999998874 33222  221          24568999999999998


Q ss_pred             EEcCCcEEEEEcc
Q 047036          480 GTTDTYLILICTL  492 (634)
Q Consensus       480 SS~D~tIrLWD~~  492 (634)
                      .+...-=+||.++
T Consensus       241 VTGK~Wp~~~ev~  253 (262)
T 3nol_A          241 VTGKLWPKVFEIT  253 (262)
T ss_dssp             EEETTCSEEEEEE
T ss_pred             EECCCCCceEEEE
Confidence            8777655555554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.00  E-value=0.0099  Score=64.46  Aligned_cols=132  Identities=11%  Similarity=-0.067  Sum_probs=83.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----------CCCeEEEEEcCCCCceEEec
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----------DDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----------~D~tIklWD~R~~~~~Vq~l  402 (634)
                      ++|.+.|+.|++++.++..-..  + . +.|+||+        ..++.+.          .+++|.++|+++.+ ++.++
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~--P-g-ia~SpDg--------k~lyVan~~~~~~~~G~~~~~VsviD~~t~~-vv~~I  165 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFL--P-H-PVAAEDG--------SFFAQASTVFERIARGKRTDYVEVFDPVTFL-PIADI  165 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSS--C-E-EEECTTS--------SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEEE
T ss_pred             CeEEEEECCCCEEEEEEECCCC--C-c-eEECCCC--------CEEEEEeccccccccCCCCCEEEEEECCCCc-EEEEE
Confidence            5899999999999999986544  2 3 4899994        4566654          47899999999864 45554


Q ss_pred             ccC-CCCccccccccccccCcceEEEEECCCC-eEEEEEC--CCcEEEEeccccccccccccCCCCCeEEEEECCCC-CE
Q 047036          403 VKG-DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL--DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KW  477 (634)
Q Consensus       403 ~gh-~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~--DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~  477 (634)
                      .-- ...         +.....-..++++||| +|+++..  +++|-+.|..+++ ...+++- +.   ++.+.|+| +.
T Consensus       166 ~v~g~~r---------~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v-~g---~~~~~p~g~~~  231 (426)
T 3c75_H          166 ELPDAPR---------FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDV-PD---CYHIFPASPTV  231 (426)
T ss_dssp             EETTCCC---------CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEEC-CS---EEEEEEEETTE
T ss_pred             ECCCccc---------cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEc-CC---ceeeccCCCcE
Confidence            200 000         0000001134789999 7888774  6899999998864 4445542 11   13445555 33


Q ss_pred             EEE-EcCCcEEEEEc
Q 047036          478 ILG-TTDTYLILICT  491 (634)
Q Consensus       478 LlS-S~D~tIrLWD~  491 (634)
                      +++ +.|+.+.+.+.
T Consensus       232 ~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          232 FYMNCRDGSLARVDF  246 (426)
T ss_dssp             EEEEETTSSEEEEEC
T ss_pred             EEEEcCCCCEEEEEC
Confidence            334 66777777765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.95  E-value=0.0091  Score=61.25  Aligned_cols=147  Identities=11%  Similarity=0.036  Sum_probs=93.0

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS  396 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~  396 (634)
                      ..++.+++.+      +.|+..|++||++++++ -....   ....+++++       +.+.++.-.++.++++|+.+.+
T Consensus        65 ~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~---FgeGit~~g-------~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           65 GHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNI---FAEGLASDG-------ERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             TEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTC---CEEEEEECS-------SCEEEEESSSCEEEEEETTTTE
T ss_pred             CEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCc---ceeEEEEeC-------CEEEEEEccCCEEEEEECCcCc
Confidence            4556666664      57999999999999998 43321   112345552       2455555578999999999864


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCC---CeEEEE
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGS---PITHVD  470 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d---~ItsVd  470 (634)
                       ++.++.....             .   ..++  ++| +|+++..++.|+++|..+.+ ...+++  .++.   .++.|.
T Consensus       128 -~~~ti~~~~e-------------G---wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          128 -RERTTRYSGE-------------G---WGLC--YWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             -EEEEEECSSC-------------C---CCEE--EETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEE
T ss_pred             -EEEEEeCCCc-------------e---eEEe--cCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccE
Confidence             4566531100             0   1122  344 67777779999999998864 343333  3333   346677


Q ss_pred             ECCCCCEEEEE-cCCcEEEEEcccccCCCCeeeeec
Q 047036          471 VTYDGKWILGT-TDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       471 fSpDGk~LlSS-~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +. ||+..+.. .++.|.++|..    +|+.+..+.
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~----TG~V~~~Id  218 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPA----TGTVVGVID  218 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTT----TCBEEEEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCC----CCcEEEEEE
Confidence            77 88655554 58899999975    677655443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.89  E-value=0.0023  Score=67.91  Aligned_cols=97  Identities=8%  Similarity=-0.039  Sum_probs=66.4

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----------CCCeEEEEEcCCCCceEEecc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----------DDNRLCQWDMRDRSGIVQNMV  403 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----------~D~tIklWD~R~~~~~Vq~l~  403 (634)
                      +|.+.|+.|++++.++......   . +.|+||        +..++.+.          .+++|.+||+.+.+ ++.++.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P---~-i~~spD--------g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS---L-AVAGHS--------GSDFALASTSFARSAKGKRTDYVEVFDPVTFL-PIADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC---E-EEECTT--------SSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-EEEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC---c-eEECCC--------CCEEEEEcccccccccCCCCCEEEEEECCCCC-EEEEEE
Confidence            7999999999999999765542   3 499999        45666665          48999999999865 456653


Q ss_pred             cCCCCccccccccccccCcceEEEEECCCC-eEEEEEC--CCcEEE--Eeccc
Q 047036          404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL--DGKIRL--YSKTS  451 (634)
Q Consensus       404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~--DGtIRL--WD~~t  451 (634)
                      -...        ..+.....-..++++||| +|+++..  .+.|.+  +|..+
T Consensus       114 v~~~--------~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          114 LPDA--------PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             ETTS--------CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCc--------cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            1100        000000111245789999 7888875  467999  99866

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.87  E-value=0.077  Score=51.60  Aligned_cols=144  Identities=7%  Similarity=-0.016  Sum_probs=84.6

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      ++.+++++...      +.|+.+|+.+++........-...  .-++++|++       +.+.++-...++|.++|+...
T Consensus        47 ~~~ly~~d~~~------~~I~~~~~~g~~~~~~~~~~~~~p--~~ia~d~~~-------~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           47 DKVVYWTDISE------PSIGRASLHGGEPTTIIRQDLGSP--EGIALDHLG-------RTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             TTEEEEEETTT------TEEEEEESSSCCCEEEECTTCCCE--EEEEEETTT-------TEEEEEETTTTEEEEEETTSC
T ss_pred             CCEEEEEECCC------CEEEEEecCCCCcEEEEECCCCCc--cEEEEEecC-------CeEEEEECCCCEEEEEEcCCC
Confidence            34455555443      689999998665433332221222  344888862       234555566789999998643


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEEC---CCcEEEEeccccccccccc-cCCCCCeEEEE
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSL---DGKIRLYSKTSMRQAKTAF-PGLGSPITHVD  470 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~---DGtIRLWD~~t~r~akt~L-~GH~d~ItsVd  470 (634)
                      ..  ..+...         +     -..-..+++++ +|+|..+..   .+.|..++..+.  ....+ ........+|+
T Consensus       112 ~~--~~~~~~---------~-----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~P~gia  173 (267)
T 1npe_A          112 QR--RVLFDT---------G-----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLT  173 (267)
T ss_dssp             SC--EEEECS---------S-----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEE
T ss_pred             CE--EEEEEC---------C-----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCCCcEEE
Confidence            21  222100         0     01235678888 567766654   368888887642  22222 12224578999


Q ss_pred             ECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          471 VTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       471 fSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      ++|+|.+|. + +..+.|..+|..
T Consensus       174 ~d~~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          174 FDAFSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETT
T ss_pred             EcCCCCEEEEEECCCCEEEEEecC
Confidence            999988775 4 556889999853

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=1  Score=50.97  Aligned_cols=150  Identities=9%  Similarity=0.137  Sum_probs=94.2

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE---eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW---KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l---kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      ...++.+.++++.+....       +-|.++|..+++...-.   .....    .|.++..+.       ...|..|+.+
T Consensus       365 v~~i~~d~~g~lWigt~~-------~Gl~~~~~~~~~~~~~~~~~~~~~~----~v~~i~~d~-------~g~lWigt~~  426 (781)
T 3v9f_A          365 VSSVCDDGQGKLWIGTDG-------GGINVFENGKRVAIYNKENRELLSN----SVLCSLKDS-------EGNLWFGTYL  426 (781)
T ss_dssp             EEEEEECTTSCEEEEEBS-------SCEEEEETTEEEEECC-----CCCS----BEEEEEECT-------TSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEeCC-------CcEEEEECCCCeEEEccCCCCCCCc----ceEEEEECC-------CCCEEEEecc
Confidence            455666666776665433       35999999876543211   11122    234555442       1357778888


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc--c--
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF--P--  460 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L--~--  460 (634)
                      +.|.++|++++.  ++.+.. . .          .....+.+++..++|.|-+|+. +-|.+||..+.+ .....  .  
T Consensus       427 ~Gl~~~~~~~~~--~~~~~~-~-~----------~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~  490 (781)
T 3v9f_A          427 GNISYYNTRLKK--FQIIEL-E-K----------NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK-VIHHYDTSNS  490 (781)
T ss_dssp             EEEEEECSSSCE--EEECCS-T-T----------TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS-CCEEECTTTS
T ss_pred             CCEEEEcCCCCc--EEEecc-C-C----------CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe-EEecccCccc
Confidence            899999998653  233310 0 0          1223578888888998888888 568889976642 22111  1  


Q ss_pred             -CCCCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036          461 -GLGSPITHVDVTYDGKWILGTTDTYLILICT  491 (634)
Q Consensus       461 -GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~  491 (634)
                       .....|.+|...++|+..++|..+-|..+|.
T Consensus       491 ~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~  522 (781)
T 3v9f_A          491 QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTP  522 (781)
T ss_dssp             SCSCSCEEEEEECTTCCEEEEESSSCEEEECT
T ss_pred             ccccceeEEEEEcCCCCEEEEEcCCCEEEEeC
Confidence             1246899999999999888887556777874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.77  E-value=0.24  Score=49.87  Aligned_cols=131  Identities=12%  Similarity=0.173  Sum_probs=82.5

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc--CCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK--GDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g--h~s~V~  410 (634)
                      +++.++|.+|++++.++.....+.     .++++        +..|+.+-.+++|.++|+.+.+ ++.++.-  +..++ 
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gw-----glt~d--------g~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~-  149 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGW-----ALTSD--------DSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPL-  149 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCC-----EEEEC--------SSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEEC-
T ss_pred             CEEEEEECCcCcEEEEEeCCCCce-----EEeeC--------CCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCccc-
Confidence            689999999999999998655442     45666        3445555568999999999864 3444421  11111 


Q ss_pred             ccccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEecccccccccccc--C-----------CCCCeEEEEECCCCC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFP--G-----------LGSPITHVDVTYDGK  476 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~--G-----------H~d~ItsVdfSpDGk  476 (634)
                              .   .+.-+... +|+|.+.. .+..|.+-|..+++ ....+.  +           -.+--++|+++|+++
T Consensus       150 --------~---~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          150 --------D---NLNELEWV-NGELLANVWLTSRIARIDPASGK-VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             --------C---CEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             --------c---cceeeEEe-CCEEEEEECCCCeEEEEECCCCC-EEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence                    0   11112222 67766665 57899999998864 222211  1           224568999999999


Q ss_pred             EEEEEcCCcEEEEEc
Q 047036          477 WILGTTDTYLILICT  491 (634)
Q Consensus       477 ~LlSS~D~tIrLWD~  491 (634)
                      .|..|-..-=+||.+
T Consensus       217 ~lfVTGK~wp~~~~v  231 (243)
T 3mbr_X          217 RLFVTGKRWPMLYEI  231 (243)
T ss_dssp             EEEEEETTCSEEEEE
T ss_pred             EEEEECCCCCcEEEE
Confidence            888755544444443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.71  E-value=0.024  Score=64.92  Aligned_cols=131  Identities=12%  Similarity=0.042  Sum_probs=75.6

Q ss_pred             CcEEEEeCCCC-cEEE-EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-----CeEEEEEcCCCCce-EEeccc
Q 047036          333 PGVQQLDIETG-KIVT-EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-----NRLCQWDMRDRSGI-VQNMVK  404 (634)
Q Consensus       333 ~TIrlWDleTG-K~V~-~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-----~tIklWD~R~~~~~-Vq~l~g  404 (634)
                      .+|+++|+++| +.+. .+....     .-.+|+||        ++.|+..+.|     ..|++|++.++... +..+..
T Consensus       201 ~~l~v~dl~~g~~~l~~~~~~~~-----~~~~WspD--------g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~  267 (751)
T 2xe4_A          201 YTIEFKRISDPSQTIADKVSGTN-----GEIVWGPD--------HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE  267 (751)
T ss_dssp             EEEEEEETTCTTCCCCCCEEEEC-----SCCEECSS--------TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC
T ss_pred             EEEEEEECCCCCEeCCccccCce-----eeEEEecC--------CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec
Confidence            47999999999 7432 122221     12389999        4556655655     36888888764321 111110


Q ss_pred             CCCCccccccccccccCcceEEEEECCCC-eEEEEE---CCCcEEEEeccccc-cc--cccccCCCCCeEEEEECCCCCE
Q 047036          405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS---LDGKIRLYSKTSMR-QA--KTAFPGLGSPITHVDVTYDGKW  477 (634)
Q Consensus       405 h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS---~DGtIRLWD~~t~r-~a--kt~L~GH~d~ItsVdfSpDGk~  477 (634)
                      .         .     ..-+..+.+|+|| +||..+   ....|+++|+.+.. ..  +..+++...+..+++|+. |++
T Consensus       268 ~---------~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~  332 (751)
T 2xe4_A          268 H---------N-----PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSH  332 (751)
T ss_dssp             C---------C-----TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred             C---------C-----CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCE
Confidence            0         0     0113467889999 676655   34578889987642 12  344556667778877654 555


Q ss_pred             EEE-EcC---C--cEEEEEc
Q 047036          478 ILG-TTD---T--YLILICT  491 (634)
Q Consensus       478 LlS-S~D---~--tIrLWD~  491 (634)
                      |+- |..   .  .|.++|+
T Consensus       333 l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEET
T ss_pred             EEEEeCCCCCCCcEEEEEcC
Confidence            544 543   2  4555554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.57  E-value=0.16  Score=56.83  Aligned_cols=60  Identities=15%  Similarity=0.174  Sum_probs=39.1

Q ss_pred             CcEEEEeCCCCcEEEEEec--cCC----Ccc-eeEEEEe-cCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKF--EKD----GTD-ITMRDIT-NDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkg--H~~----~V~-I~vvsfs-Pd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                      ++|+.+|+.||+++-.++.  |..    .+. ..+.... .++|.     -..++.++.++.|+++|.++++.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~-----~~~v~~~~~~G~l~~lD~~tG~~  358 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKI-----VKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCE-----EEEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCE-----EEEEEEECCCceEEEEECCCCCE
Confidence            5899999999999988764  321    110 0121221 33210     03788999999999999998753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.52  E-value=0.045  Score=54.94  Aligned_cols=155  Identities=8%  Similarity=0.075  Sum_probs=88.2

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC--------------------CCcceeEEEEec
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK--------------------DGTDITMRDITN  365 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~--------------------~~V~I~vvsfsP  365 (634)
                      .|.++. .+.+++++.++..+      +.|+.||..++++ ..|....                    ..+  .-+++.|
T Consensus        20 ~p~~i~-~d~~g~~l~v~~~~------~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p--~gi~~~~   89 (322)
T 2fp8_A           20 APNSFT-FDSTNKGFYTSVQD------GRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRT--YDISYNL   89 (322)
T ss_dssp             CCCCEE-CCTTCSSEEEECTT------SEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCE--EEEEEET
T ss_pred             CceEEE-EcCCCCEEEEEcCC------CeEEEECCCCCce-EEEecccccccccccccccchhccccCCCC--ceEEEcC
Confidence            344433 23445545555433      5899999987654 4443210                    111  2346776


Q ss_pred             CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEEC----
Q 047036          366 DTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSL----  440 (634)
Q Consensus       366 d~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~----  440 (634)
                      +        ...|+.+...+.|.++|+.++.  +..+....       .+..   -.....+++.+ +|.|.++..    
T Consensus        90 ~--------~g~l~v~d~~~~i~~~d~~~g~--~~~~~~~~-------~~~~---~~~p~~i~~d~~~G~l~v~d~~~~~  149 (322)
T 2fp8_A           90 Q--------NNQLYIVDCYYHLSVVGSEGGH--ATQLATSV-------DGVP---FKWLYAVTVDQRTGIVYFTDVSTLY  149 (322)
T ss_dssp             T--------TTEEEEEETTTEEEEECTTCEE--CEEEESEE-------TTEE---CSCEEEEEECTTTCCEEEEESCSSC
T ss_pred             C--------CCcEEEEECCCCEEEEeCCCCE--EEEecccC-------CCCc---ccccceEEEecCCCEEEEECCcccc
Confidence            2        2356666666779999987532  22332100       0111   11245678899 897666543    


Q ss_pred             --------------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          441 --------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       441 --------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                                    +|.|..||..+++ ......+. ....+|+|+|||++|. + +..+.|..+++.
T Consensus       150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~~~~-~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          150 DDRGVQQIMDTSDKTGRLIKYDPSTKE-TTLLLKEL-HVPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             CTTCHHHHHHHTCCCEEEEEEETTTTE-EEEEEEEE-SCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             cccccceehcccCCCceEEEEeCCCCE-EEEeccCC-ccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence                          3678888876542 32222222 2347899999999654 5 567889999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.41  E-value=0.026  Score=62.91  Aligned_cols=77  Identities=17%  Similarity=0.277  Sum_probs=46.4

Q ss_pred             CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc-C-
Q 047036          384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP-G-  461 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~-G-  461 (634)
                      ++.|..||+++++. +-.+.. ..+              ...+...+.+|.|++|+.||.|+.||..+++ .+-.++ + 
T Consensus       443 ~g~l~a~D~~tG~~-~W~~~~-~~~--------------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~  505 (571)
T 2ad6_A          443 MGQIRAFDLTTGKA-KWTKWE-KFA--------------AWGGTLYTKGGLVWYATLDGYLKALDNKDGK-ELWNFKMPS  505 (571)
T ss_dssp             CEEEEEECTTTCCE-EEEEEE-SSC--------------CCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSS
T ss_pred             CCeEEEEECCCCCE-EEEecC-CCC--------------ccceeEEECCCEEEEEcCCCeEEEEECCCCC-EEEEEeCCC
Confidence            47889999887653 333210 000              0111123457788899999999999998875 444443 2 


Q ss_pred             --CCCCeEEEEECCCCCEEEE
Q 047036          462 --LGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       462 --H~d~ItsVdfSpDGk~LlS  480 (634)
                        ++.|   +.+.+||+.+++
T Consensus       506 ~~~~~p---~~~~~~G~~yv~  523 (571)
T 2ad6_A          506 GGIGSP---MTYSFKGKQYIG  523 (571)
T ss_dssp             CCCSCC---EEEEETTEEEEE
T ss_pred             CcEeee---EEEEECCEEEEE
Confidence              2233   335688886665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.39  E-value=0.054  Score=59.49  Aligned_cols=146  Identities=10%  Similarity=0.021  Sum_probs=91.3

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCC----cEEEEEe--------ccCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETG----KIVTEWK--------FEKDGTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTG----K~V~~lk--------gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      .+++.|+..+...     .+|++.|+.+-    +++++++        |-+.  + .-+.++|+        | +.+++.
T Consensus        93 ~~r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~--P-h~~~~~pd--------G-i~Vs~~  155 (462)
T 2ece_A           93 IERRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR--L-HTVHCGPD--------A-IYISAL  155 (462)
T ss_dssp             CCSCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE--E-EEEEECSS--------C-EEEEEE
T ss_pred             ccCCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCc--c-cceeECCC--------e-EEEEcC
Confidence            6677777665543     79999999877    8888873        1111  0 11266787        5 777777


Q ss_pred             CC------CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEE----------------
Q 047036          383 DD------NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGS----------------  439 (634)
Q Consensus       383 ~D------~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS----------------  439 (634)
                      .+      +.|.+.|.++.+ ++.++.--..+     ++    ..+.   +.++|++. +++..                
T Consensus       156 g~~~g~~~g~v~vlD~~T~~-v~~~~~~~~~~-----~~----~~Yd---~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~  222 (462)
T 2ece_A          156 GNEEGEGPGGILMLDHYSFE-PLGKWEIDRGD-----QY----LAYD---FWWNLPNEVLVSSEWAVPNTIEDGLKLEHL  222 (462)
T ss_dssp             EETTSCSCCEEEEECTTTCC-EEEECCSBCTT-----CC----CCCC---EEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred             CCcCCCCCCeEEEEECCCCe-EEEEEccCCCC-----cc----ccce---EEECCCCCEEEEccCcCccccccccchhhh
Confidence            76      899999999864 45555310000     00    1111   35678884 44442                


Q ss_pred             ---CCCcEEEEecccccccccccc-C-CCCCeEEEEE--CCCCCEEEE--E-----cCCcEEEEEc
Q 047036          440 ---LDGKIRLYSKTSMRQAKTAFP-G-LGSPITHVDV--TYDGKWILG--T-----TDTYLILICT  491 (634)
Q Consensus       440 ---~DGtIRLWD~~t~r~akt~L~-G-H~d~ItsVdf--SpDGk~LlS--S-----~D~tIrLWD~  491 (634)
                         ...+|.+||+.+++ ...+++ | .+.....|.|  +|||+++..  -     .+++|.+|..
T Consensus       223 ~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          223 KDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             HHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             hhccCCEEEEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence               37999999998753 444454 2 2234567766  999999876  3     4568877764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.37  E-value=0.8  Score=44.29  Aligned_cols=174  Identities=8%  Similarity=-0.042  Sum_probs=93.7

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC-CCcceeEEEEecCCCCCCCCCCCEEEEEeC-
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK-DGTDITMRDITNDTKSSQLDPSESTFLGLD-  383 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-  383 (634)
                      .|.++.+....+.+++++...      +.|.++|+. |+..+.+.... .. + .-++++|+        +..|+.+.. 
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~------~~I~~~~~~-g~~~~~~~~~~~~~-P-~~i~vd~~--------~g~lyv~~~~  142 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQL------DRIEVAKMD-GTQRRVLFDTGLVN-P-RGIVTDPV--------RGNLYWTDWN  142 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTT------TEEEEEETT-SCSCEEEECSSCSS-E-EEEEEETT--------TTEEEEEECC
T ss_pred             CccEEEEEecCCeEEEEECCC------CEEEEEEcC-CCCEEEEEECCCCC-c-cEEEEeeC--------CCEEEEEECC
Confidence            565544432345566666543      589999987 43333332111 22 2 23488886        345554443 


Q ss_pred             --CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE-EECCCcEEEEeccccccccccc
Q 047036          384 --DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       384 --D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~t~r~akt~L  459 (634)
                        .++|.++++....  .+.+..  ..            -..-..+++++++ +|.+ -+..+.|..+|..+.. ....+
T Consensus       143 ~~~~~I~~~~~dg~~--~~~~~~--~~------------~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~  205 (267)
T 1npe_A          143 RDNPKIETSHMDGTN--RRILAQ--DN------------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-RRKVL  205 (267)
T ss_dssp             SSSCEEEEEETTSCC--CEEEEC--TT------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-EEEEE
T ss_pred             CCCcEEEEEecCCCC--cEEEEE--CC------------CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-eEEEe
Confidence              4688888876432  122210  00            0113567888864 6654 4566899999987642 33444


Q ss_pred             cCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCC
Q 047036          460 PGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPL  523 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe  523 (634)
                      .+...| .+|++.  +.+|. + ...+.|..+|..    .|+.+..+.-  + ..|.|.-+.+.|.
T Consensus       206 ~~~~~P-~gi~~d--~~~lyva~~~~~~v~~~d~~----~g~~~~~i~~--g-~~~~p~gi~~~~~  261 (267)
T 1npe_A          206 EGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLA----ISKEMDTFHP--H-KQTRLYGITIALS  261 (267)
T ss_dssp             ECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETT----TTEEEEEECC--S-SCCCCCCEEEECS
T ss_pred             cCCCCc-eEEEEe--CCEEEEEECCCCeEEEEeCC----CCCceEEEcc--c-cccccceeeecCc
Confidence            443333 677764  44554 4 446889999864    4665555431  1 1133445554444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.26  E-value=0.11  Score=55.55  Aligned_cols=152  Identities=13%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             CcceeeEEe-CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-
Q 047036          306 TPKKALLMR-GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-  383 (634)
Q Consensus       306 sP~~~mL~~-~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-  383 (634)
                      .|..+.+.. .+++++++...       ..|+++|+.++++..... .....  .-++|+|+        ++.|+.+.. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~-~~~~P--~~ia~d~~--------G~~lyvad~~  199 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS-GLSKV--RTICWTHE--------ADSMIITNDQ  199 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-------EEEEEEETTTTEEEEEEC-CCSCE--EEEEECTT--------SSEEEEEECC
T ss_pred             CCCEEEECCCCCCeEEEEeCC-------CcEEEEECCCCEEEEEec-CCCCc--ceEEEeCC--------CCEEEEEeCC
Confidence            466654432 34556666543       479999999776544433 22222  34588887        564555443 


Q ss_pred             CC----eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEE-CCCcEEEEecccccc-cc
Q 047036          384 DN----RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGS-LDGKIRLYSKTSMRQ-AK  456 (634)
Q Consensus       384 D~----tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS-~DGtIRLWD~~t~r~-ak  456 (634)
                      .+    .+...+....-.....+..                -.....++++| +|+|.++. ..+.|+.||..+... ..
T Consensus       200 ~~~~~~~v~~~~~~g~~~~~~~l~~----------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~  263 (430)
T 3tc9_A          200 NNNDRPNNYILTRESGFKVITELTK----------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL  263 (430)
T ss_dssp             SCTTSEEEEEEEGGGTSCSEEEEEE----------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcccceEEEEeCCCceeeeeeecc----------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            22    3444443321110112210                01124567888 78766654 668999999875421 11


Q ss_pred             ccccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          457 TAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       457 t~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      ..+++. ..-.+|+|+|+|++|. + +..++|..++..
T Consensus       264 ~~~~~~-~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          264 FTIQDS-GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECSSS-SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCC-CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            222222 3458999999999654 4 567889998753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.25  E-value=0.028  Score=62.83  Aligned_cols=79  Identities=22%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCC
Q 047036          384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~  463 (634)
                      +++|..||+++++. +-....+ .+              .......+.+|.|++|+.||.||.||..+++ .+-.+.. .
T Consensus       465 ~G~l~A~D~~tG~~-~W~~~~~-~~--------------~~~g~~~tagglvf~g~~dg~l~A~D~~tG~-~lW~~~~-~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKV-VWEHKEH-LP--------------LWAGVLATAGNLVFTGTGDGYFKAFDAKSGK-ELWKFQT-G  526 (582)
T ss_dssp             SEEEEEECTTTCCE-EEEEEES-SC--------------CCSCCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEEC-S
T ss_pred             cceEEEEECCCCCE-EEEecCC-CC--------------CcccceEeCCCEEEEECCCCcEEEEECCCCC-EEEEecC-C
Confidence            67899999988653 3222100 00              0111123467889999999999999998885 4433331 1


Q ss_pred             CCeEE--EEECCCCCEEEE
Q 047036          464 SPITH--VDVTYDGKWILG  480 (634)
Q Consensus       464 d~Its--VdfSpDGk~LlS  480 (634)
                      ..|.+  +.+..||+..++
T Consensus       527 ~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          527 SGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             SCCCSCCEEEEETTEEEEE
T ss_pred             CCcccCceEEEECCEEEEE
Confidence            22222  566789985554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.23  E-value=0.065  Score=59.63  Aligned_cols=158  Identities=16%  Similarity=0.077  Sum_probs=88.3

Q ss_pred             CcEEEEeCCCCcEEEEEecc--CC----Cc-ceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc-c
Q 047036          333 PGVQQLDIETGKIVTEWKFE--KD----GT-DITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV-K  404 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH--~~----~V-~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~-g  404 (634)
                      .+|+.+|+.||+++-+++..  ..    .+ ...+....+++|.     -..++.++.++.|+++|.++++. +.... +
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~-----~~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~  345 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKM-----TPLLSHIDRNGILYTLNRENGNL-IVAEKVD  345 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEE-----EEEEEEECTTSEEEEEETTTCCE-EEEEESS
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcE-----EEEEEEeCCCcEEEEEECCCCCE-Eeeeccc
Confidence            36999999999999887642  11    11 0012233344210     02577899999999999998753 33221 1


Q ss_pred             CCCCccccccccc-----------c---------------ccCcceEEEEECCCC-eEEEEE------------------
Q 047036          405 GDSPVLHWTQGHQ-----------F---------------SRGTNFQCFASTGDG-SIVVGS------------------  439 (634)
Q Consensus       405 h~s~V~~~~~g~~-----------y---------------~~~~~fssva~s~dG-~IASGS------------------  439 (634)
                      +.  + .|..+-+           +               .-..++..++++|++ .|++++                  
T Consensus       346 ~~--~-~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~  422 (571)
T 2ad6_A          346 PA--V-NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ  422 (571)
T ss_dssp             TT--C-CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred             CC--c-cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence            10  0 0100000           0               001112345666654 555543                  


Q ss_pred             -------------------CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCC
Q 047036          440 -------------------LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGK  499 (634)
Q Consensus       440 -------------------~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~  499 (634)
                                         .+|.|..||+.+++ .+-.++ +..++.+..+...|..|.. +.|++|+.||+.    +|+
T Consensus       423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~-~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~----tG~  496 (571)
T 2ad6_A          423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK-AKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNK----DGK  496 (571)
T ss_dssp             CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC-EEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETT----TCC
T ss_pred             ccccccceeccCccccCCCCCCeEEEEECCCCC-EEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECC----CCC
Confidence                               35889999998874 444443 2234444443433444544 889999999986    688


Q ss_pred             eeeeec
Q 047036          500 TKTGFS  505 (634)
Q Consensus       500 ~~~gF~  505 (634)
                      .+-.|.
T Consensus       497 ~lw~~~  502 (571)
T 2ad6_A          497 ELWNFK  502 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            776554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.15  E-value=0.073  Score=60.26  Aligned_cols=160  Identities=13%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             cEEEEeCCCCcEEEEEec--cCCC-----cceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036          334 GVQQLDIETGKIVTEWKF--EKDG-----TDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD  406 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkg--H~~~-----V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~  406 (634)
                      +|+.+|+.||+++-+++.  |...     -+..+..+..+++.     ...++.++.++.|+++|.++++. +....-..
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~-----~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~  344 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP-----RKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGK  344 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE-----EEEEEECCTTSEEEEEETTTCCE-EEEEESSC
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE-----EEEEEEECCCCEEEEEECCCCCE-eccccccc
Confidence            599999999999988875  3210     01112233344221     12689999999999999998753 32211000


Q ss_pred             ------------CCccccccccccc-----------cCcceEEEEECCCC-eEEEE------------------------
Q 047036          407 ------------SPVLHWTQGHQFS-----------RGTNFQCFASTGDG-SIVVG------------------------  438 (634)
Q Consensus       407 ------------s~V~~~~~g~~y~-----------~~~~fssva~s~dG-~IASG------------------------  438 (634)
                                  .++.  .....|.           -..++..++++|+. .+++.                        
T Consensus       345 ~~w~~~~d~~~g~p~~--~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g  422 (668)
T 1kv9_A          345 VTWAEKVDLATGRPVE--APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA  422 (668)
T ss_dssp             CCSEEEECTTTCCEEE--CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred             cccccccccccCCccc--cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence                        0000  0000000           01112235566653 33321                        


Q ss_pred             ------------ECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          439 ------------SLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       439 ------------S~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                                  +.+|.|+.||+.+++ .+-.++ +..++.+..++..|..|.. +.|++|+.||..    +|+.+-.|.
T Consensus       423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~-~~W~~~-~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~----tG~~l~~~~  496 (668)
T 1kv9_A          423 AGFADATDVPAAVVSGALLAWDPVKQK-AAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD----KGEALWQFE  496 (668)
T ss_dssp             SCGGGCCCCCGGGCEEEEEEEETTTTE-EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT----TCCEEEEEE
T ss_pred             ccccccCCCCCCCccceEEEEeCCCCc-EEEEcc-CCCCCcCceeEeCCCEEEEECCcccchhhhhh----cChhheEec
Confidence                        245889999998875 444444 2344555555566777776 889999999986    688776665


Q ss_pred             CC
Q 047036          506 GR  507 (634)
Q Consensus       506 gh  507 (634)
                      -.
T Consensus       497 ~~  498 (668)
T 1kv9_A          497 AQ  498 (668)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.04  E-value=0.69  Score=46.15  Aligned_cols=130  Identities=14%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEcCCCC-ceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDMRDRS-GIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~R~~~-~~Vq~l~gh~s~V~  410 (634)
                      +.|+.+|..+|++.....+-.. .  .-++|+|+        +..|+.+ +..++|.++|+.... .....+.       
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~-p--~gia~~~d--------g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-------  226 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHV-P--GGAEVSAD--------SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-------  226 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESC-C--CEEEECTT--------SSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-------
T ss_pred             ceEEEEeCCCCEEEEeccCCcc-C--cceEECCC--------CCEEEEEeCCCCeEEEEECCCCcCCccceEE-------
Confidence            5799999988875433322111 1  12488998        5555544 667999999987421 0011111       


Q ss_pred             ccccccccccCcceEEEEECCCCeEEEEEC-----------CCcEEEEecccccccccccc---CC-CCCeEEEEECCCC
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDGSIVVGSL-----------DGKIRLYSKTSMRQAKTAFP---GL-GSPITHVDVTYDG  475 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG~IASGS~-----------DGtIRLWD~~t~r~akt~L~---GH-~d~ItsVdfSpDG  475 (634)
                            +. ..  -..+++.++|.|.++..           .+.|..+|..+ + ....+.   |. -..++++++ .+|
T Consensus       227 ------~~-~g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~-~~~~~~~~~g~~~~~~~~~~~-~~g  294 (322)
T 2fp8_A          227 ------KI-PN--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-N-ILEVIPLPPPFAGEHFEQIQE-HDG  294 (322)
T ss_dssp             ------EC-SS--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-C-EEEEEECCTTTTTSCCCEEEE-ETT
T ss_pred             ------eC-CC--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-C-EEEEEECCCCCccccceEEEE-eCC
Confidence                  00 01  24578888986555443           36788899754 2 333332   21 245777877 467


Q ss_pred             CEEEE-EcCCcEEEEEcc
Q 047036          476 KWILG-TTDTYLILICTL  492 (634)
Q Consensus       476 k~LlS-S~D~tIrLWD~~  492 (634)
                      +..++ ...+.|..+++.
T Consensus       295 ~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          295 LLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEECSSCSEEEEEEC-
T ss_pred             EEEEeecCCCceEEEecc
Confidence            66666 567888888854

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.00  E-value=0.014  Score=66.97  Aligned_cols=107  Identities=8%  Similarity=-0.048  Sum_probs=66.8

Q ss_pred             eEEEEe-cCCCCCCCCCCCEEEEEeC-----CCeEEEEEcCCC-CceEEecccCCCCccccccccccccCcceEEEEECC
Q 047036          359 TMRDIT-NDTKSSQLDPSESTFLGLD-----DNRLCQWDMRDR-SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG  431 (634)
Q Consensus       359 ~vvsfs-Pd~K~~q~~~g~~laSGS~-----D~tIklWD~R~~-~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~  431 (634)
                      ...+|| ||        |+.||-+.+     ..+|+++|+.++ ..+...+.                  ..+..++++|
T Consensus       177 ~~~~~S~PD--------G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~------------------~~~~~~~Wsp  230 (751)
T 2xe4_A          177 MEVKPAPPE--------HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS------------------GTNGEIVWGP  230 (751)
T ss_dssp             EEEEECTTT--------TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE------------------EECSCCEECS
T ss_pred             eeeEecCCC--------CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc------------------CceeeEEEec
Confidence            345899 99        566664433     246999999876 42100010                  0123567899


Q ss_pred             CC-eEEEEECC-----CcEEEEecccccccc-ccc-c-CCCCCeEEEEECCCCCEEEE-Ec---CCcEEEEEcc
Q 047036          432 DG-SIVVGSLD-----GKIRLYSKTSMRQAK-TAF-P-GLGSPITHVDVTYDGKWILG-TT---DTYLILICTL  492 (634)
Q Consensus       432 dG-~IASGS~D-----GtIRLWD~~t~r~ak-t~L-~-GH~d~ItsVdfSpDGk~LlS-S~---D~tIrLWD~~  492 (634)
                      || .|+..+.|     ..|.++++.+.. .. ..+ . .......++.+||||++|+. +.   ...|.++|+.
T Consensus       231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          231 DHTSLFYVTKDETLRENKVWRHVMGKLQ-SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             STTEEEEEEECTTCCEEEEEEEETTSCG-GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             CCCEEEEEEECCCCCCCEEEEEECCCCc-hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            98 67777765     368888886642 22 122 2 23346788999999999986 42   3457777864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.84  E-value=0.16  Score=52.12  Aligned_cols=126  Identities=7%  Similarity=-0.029  Sum_probs=80.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.+.++|++|++++.++.....+.     .+++|        +..|+.+..+++|.++|+.+.+ ++.++.-..      
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~eGw-----GLt~D--------g~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~------  175 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSGEGW-----GLCYW--------NGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKL------  175 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCC-----CEEEE--------TTEEEEECSSSEEEEECTTTCC-EEEEEECEE------
T ss_pred             CEEEEEECCcCcEEEEEeCCCcee-----EEecC--------CCEEEEECCCCEEEEEcCCCCe-EEEEEEeCC------
Confidence            689999999999999998654432     44566        4567766679999999999864 344442100      


Q ss_pred             ccccccccCcceEEEEECCCCeEEEEE-CCCcEEEEecccccccccccc-------------CCCCCeEEEEECCCCCEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSKTSMRQAKTAFP-------------GLGSPITHVDVTYDGKWI  478 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASGS-~DGtIRLWD~~t~r~akt~L~-------------GH~d~ItsVdfSpDGk~L  478 (634)
                       .+....   ...-+.+. +|+|.++. .+++|.+-|..+++ ....+.             .-.+--++|+++|+++.|
T Consensus       176 -~g~~v~---~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          176 -RGQPVE---LINELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             -TTEECC---CEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             -CCcccc---cccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence             011100   11222333 67776666 58899999998864 322221             123567899999998887


Q ss_pred             EEEcCC
Q 047036          479 LGTTDT  484 (634)
Q Consensus       479 lSS~D~  484 (634)
                      ..|-..
T Consensus       250 fVTGK~  255 (268)
T 3nok_A          250 FMTGKL  255 (268)
T ss_dssp             EEEETT
T ss_pred             EEeCCC
Confidence            764443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.83  E-value=0.86  Score=48.79  Aligned_cols=166  Identities=11%  Similarity=0.083  Sum_probs=93.1

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-CCCcceeEEEEecCCCCCCCCCCC-EEEEEeC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-KDGTDITMRDITNDTKSSQLDPSE-STFLGLD  383 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~  383 (634)
                      .|.++.+...+++++++...+      +.|+.+|..+|+++..+-.. ..... .-++|+|+        +. +.++-..
T Consensus       229 ~P~giavd~~~G~lyv~d~~~------~~V~~~d~~~g~~~~~~~~~~~~~~~-~~ia~dpd--------G~~LYvad~~  293 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHH------AMISSYDPATGTLTEEEVMMDTKGSN-FHIVWHPT--------GDWAYIIYNG  293 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTC------SEEEEECTTTCCEEEEEEECSCCSSC-EEEEECTT--------SSEEEEEETT
T ss_pred             CCCEEEEeCCCCeEEEEECCC------CEEEEEECCCCeEEEEEeccCCCCCc-ccEEEeCC--------CCEEEEEeCC
Confidence            355544433356666666543      58999999999885544322 22111 12489998        55 5555566


Q ss_pred             CCeEEEEEcCCC-Cce--EEecccC-CCCccccccccc-cccCcceEEEEE---------CCCCeEEEE-ECCCcEEEEe
Q 047036          384 DNRLCQWDMRDR-SGI--VQNMVKG-DSPVLHWTQGHQ-FSRGTNFQCFAS---------TGDGSIVVG-SLDGKIRLYS  448 (634)
Q Consensus       384 D~tIklWD~R~~-~~~--Vq~l~gh-~s~V~~~~~g~~-y~~~~~fssva~---------s~dG~IASG-S~DGtIRLWD  448 (634)
                      .++|+++|+... +.+  +..+.+. ...  .+..+.- ...-..-..+++         .++|.|.++ +..+.||.++
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~--g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSP--GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCC--CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCC--ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            799999886532 110  1223221 000  0001100 000011245777         777866555 4567899999


Q ss_pred             ccccccccccccCC------------------CCCeEEEEEC-CCCCEEEE-EcCCcEEEEEc
Q 047036          449 KTSMRQAKTAFPGL------------------GSPITHVDVT-YDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       449 ~~t~r~akt~L~GH------------------~d~ItsVdfS-pDGk~LlS-S~D~tIrLWD~  491 (634)
                      ..+ . . .++-|.                  -..-.+|+++ ++|..+++ +..+.|+.+++
T Consensus       372 ~~G-~-v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          372 PEG-R-V-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTS-E-E-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCC-C-E-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            643 2 2 222111                  1236899999 88888888 77888988875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.64  E-value=1.9  Score=48.95  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=99.0

Q ss_pred             ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC--Cc-ceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD--GT-DITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~--~V-~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      ...++.+.++++.+....        -|.+||..+++...-...+..  .. .-.|.++..|.       ...|..|+.+
T Consensus       265 i~~i~~d~~g~lWigt~~--------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-------~g~lWigt~~  329 (795)
T 4a2l_A          265 IRSLAMDSQNRLWIGTFN--------DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-------QGGMWLGTYF  329 (795)
T ss_dssp             EEEEEECTTSCEEEEESS--------CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-------TSCEEEEESS
T ss_pred             EEEEEEcCCCCEEEEeCC--------hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-------CcCEEEEECC
Confidence            445666667776665532        499999998875443221110  00 00233454442       2468889999


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc----
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP----  460 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~----  460 (634)
                      +-|.++|+....  .+.+. +..       ...-.....+.+++..++|.|-+|+.++-|.+||..+.+ ......    
T Consensus       330 ~Gl~~~~~~~~~--~~~~~-~~~-------~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~  398 (795)
T 4a2l_A          330 GGLNYYHPIRNR--FKNIR-NIP-------YKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR-FTSYTLQEDE  398 (795)
T ss_dssp             SCEEEECGGGGS--SEEEC-CCT-------TSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC-EEEECCC---
T ss_pred             CCeEEeCCCccc--ceEEc-CCC-------CCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc-EEEEecCCCC
Confidence            999999987543  12221 000       000012345889999999999999999889999977542 222111    


Q ss_pred             ---C-CCCCeEEEEECCCCC-EEEEEcCCcEEEEEcc
Q 047036          461 ---G-LGSPITHVDVTYDGK-WILGTTDTYLILICTL  492 (634)
Q Consensus       461 ---G-H~d~ItsVdfSpDGk-~LlSS~D~tIrLWD~~  492 (634)
                         + ....|.+|...++|+ ..+++.++-|.++|..
T Consensus       399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence               1 246799999999999 5566777788888854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.41  E-value=4.8  Score=45.55  Aligned_cols=156  Identities=12%  Similarity=0.165  Sum_probs=96.5

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-----CCCc-ceeEEEEecCCCCCCCCCCCEEEE
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-----KDGT-DITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-----~~~V-~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      ....++.+.++++-+..-.       +-|.+++..+++... +...     .... .-.|.++..|.+       ..|..
T Consensus       314 ~v~~i~~D~~g~lWigt~~-------~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~-------g~lWi  378 (781)
T 3v9f_A          314 SARYIFQDSFNNIWIGTWG-------GGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQ-------GKLWI  378 (781)
T ss_dssp             CEEEEEECSSCCEEEEEBS-------SCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTT-------SCEEE
T ss_pred             eEEEEEEeCCCCEEEEecC-------CeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCC-------CCEEE
Confidence            3456666777776665533       359999988766433 3210     0000 002345555521       46888


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc-
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF-  459 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L-  459 (634)
                      |+.++-|.++|+.++.  ++.+.  ...         -.....+.+++..++|.|-+|+.++-|..||..+++ .+... 
T Consensus       379 gt~~~Gl~~~~~~~~~--~~~~~--~~~---------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~  444 (781)
T 3v9f_A          379 GTDGGGINVFENGKRV--AIYNK--ENR---------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIEL  444 (781)
T ss_dssp             EEBSSCEEEEETTEEE--EECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCS
T ss_pred             EeCCCcEEEEECCCCe--EEEcc--CCC---------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEecc
Confidence            9988899999987531  22221  000         012345788888888999889988889999986643 22211 


Q ss_pred             -cCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          460 -PGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       460 -~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                       .-....|.+|...++|+..+++. +-|.++|..
T Consensus       445 ~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~  477 (781)
T 3v9f_A          445 EKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLA  477 (781)
T ss_dssp             TTTCCCCEEEEEECTTSEEEEEET-TEEEEEESS
T ss_pred             CCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCC
Confidence             11346899999999999777776 668888853

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.32  E-value=0.15  Score=57.35  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc--c
Q 047036          383 DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF--P  460 (634)
Q Consensus       383 ~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L--~  460 (634)
                      ..+.|..||+++++. +-... +..+              .+.....+.+|.|++|+.||.||.||..+++ .+-.+  +
T Consensus       451 ~~G~l~A~D~~tG~~-~W~~~-~~~~--------------~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~-~lW~~~l~  513 (599)
T 1w6s_A          451 GLGQIKAYNAITGDY-KWEKM-ERFA--------------VWGGTMATAGDLVFYGTLDGYLKARDSDTGD-LLWKFKIP  513 (599)
T ss_dssp             CCEEEEEECTTTCCE-EEEEE-ESSC--------------CCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECS
T ss_pred             CcCeEEEEECCCCCE-EeEec-CCCC--------------ccCcceEecCCEEEEECCCCeEEEEECCCCC-EEEEeeCC
Confidence            347888889887642 22221 0000              0111123467788889999999999999885 44333  2


Q ss_pred             --CCCCCeEEEEECCCCCEEEE
Q 047036          461 --GLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       461 --GH~d~ItsVdfSpDGk~LlS  480 (634)
                        ..+.|   +.+..||+..++
T Consensus       514 ~g~~~~P---~~y~~~G~qyv~  532 (599)
T 1w6s_A          514 SGAIGYP---MTYTHKGTQYVA  532 (599)
T ss_dssp             SCCCSCC---EEEEETTEEEEE
T ss_pred             CCcEecc---EEEEeCCEEEEE
Confidence              22333   445678875544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.28  E-value=1.2  Score=44.33  Aligned_cols=143  Identities=10%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC--eEEEEEc
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN--RLCQWDM  392 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~--tIklWD~  392 (634)
                      .++++++++..+      +.|+.||.. |+....+.... .  ..-++++|+        ++++++....+  .|..+|+
T Consensus        41 ~~g~lyv~d~~~------~~I~~~d~~-g~~~~~~~~~~-~--p~gia~~~d--------G~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           41 PDGTIFVTNHEV------GEIVSITPD-GNQQIHATVEG-K--VSGLAFTSN--------GDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             TTSCEEEEETTT------TEEEEECTT-CCEEEEEECSS-E--EEEEEECTT--------SCEEEEEECTTSCEEEEEEC
T ss_pred             CCCCEEEEeCCC------CeEEEECCC-CceEEEEeCCC-C--ceeEEEcCC--------CcEEEEeccCCcceEEEEcC
Confidence            345556665433      689999987 56655554432 2  134578887        56555544332  4777887


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEE-ECCCcEEEEeccccc-ccc---c-----cccCC
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVG-SLDGKIRLYSKTSMR-QAK---T-----AFPGL  462 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASG-S~DGtIRLWD~~t~r-~ak---t-----~L~GH  462 (634)
                      .++.  +..+.....             ......++..+++.++++ +..|.|..+|..+++ ...   .     ...+.
T Consensus       103 ~~g~--~~~~~~~~~-------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~  167 (306)
T 2p4o_A          103 SDGT--VETLLTLPD-------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  167 (306)
T ss_dssp             TTSC--EEEEEECTT-------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             CCCe--EEEEEeCCC-------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence            6653  233321100             001133445666654444 468888888875421 010   0     11111


Q ss_pred             CCCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036          463 GSPITHVDVTYDGKWIL-G-TTDTYLILICTL  492 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~  492 (634)
                      -....+|  +|||++|. + +..+.|..+|+.
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            1235666  99998765 4 667899999964

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.12  E-value=0.41  Score=51.31  Aligned_cols=152  Identities=7%  Similarity=0.029  Sum_probs=83.5

Q ss_pred             cCcceeeEEe--CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          305 STPKKALLMR--GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       305 fsP~~~mL~~--~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      ..|.++.+..  .+++++++...       +.|+.+|+.+|++...+. .....  .-++|+|+        +.+.++..
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-------~~I~~id~~~g~v~~~~~-~~~~P--~giavd~d--------G~lyVad~  200 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-------DAFRHVDFVNQYVDIKTT-NIGQC--ADVNFTLN--------GDMVVVDD  200 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-------SCEEEEETTTTEEEEECC-CCSCE--EEEEECTT--------CCEEEEEC
T ss_pred             CCCceEEEccccCCCEEEEEeCC-------CCEEEEECCCCEEEEeec-CCCCc--cEEEECCC--------CCEEEEcC
Confidence            4577665443  24666666543       479999999887665443 22222  34588887        56444433


Q ss_pred             CC---C-eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEE-CCCcEEEEecccccccc
Q 047036          383 DD---N-RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGS-LDGKIRLYSKTSMRQAK  456 (634)
Q Consensus       383 ~D---~-tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS-~DGtIRLWD~~t~r~ak  456 (634)
                      ..   . .+...+...+......+.                .-.....+++.+ +|.|.++. ..+.|+.+|..++. ..
T Consensus       201 ~~~~~~~gv~~~~~~~~~~~~~~~~----------------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~-~~  263 (433)
T 4hw6_A          201 QSSDTNTGIYLFTRASGFTERLSLC----------------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT-LT  263 (433)
T ss_dssp             CSCTTSEEEEEECGGGTTCCEEEEE----------------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC-EE
T ss_pred             CCCcccceEEEEECCCCeecccccc----------------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe-EE
Confidence            21   1 233333221110000110                001123457788 78777665 56789999987542 31


Q ss_pred             cccc--CCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          457 TAFP--GLGSPITHVDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       457 t~L~--GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      +.+.  +....-.+|+|+|+|++|. + +..++|+.++.
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            2221  1122235799999999554 4 66788999885

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.97  E-value=0.47  Score=53.39  Aligned_cols=60  Identities=12%  Similarity=0.058  Sum_probs=38.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCC------c-ceeEEEEe-cCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDG------T-DITMRDIT-NDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~------V-~I~vvsfs-Pd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                      .+|..+|+.||+++-.++.....      + ...+..+. .++|.     -..++.++.++.|++.|.++++.
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~-----~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKA-----RKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCE-----EEEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcE-----EEEEEEECCCcEEEEEECCCCCE
Confidence            48999999999999887653210      0 00122332 33210     03677889999999999998753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.86  E-value=0.23  Score=56.19  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC------CCeEEEEEcCCCCceEEecccC-
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD------DNRLCQWDMRDRSGIVQNMVKG-  405 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~------D~tIklWD~R~~~~~Vq~l~gh-  405 (634)
                      +.|+.+|.+||+++-++..........+ ..+|-     +. +..++.|+.      ++.|+.+|+++++. +-.+... 
T Consensus       127 g~l~alD~~tG~~~W~~~~~~~~~~~~~-~~~P~-----v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~  198 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTTDPAKPYSI-TGAPR-----VV-KGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWRFYTVP  198 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBC-CSCCE-----EE-TTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSC
T ss_pred             CEEEEEECCCCCEeeeeccCCCCCccee-cCCCE-----EE-CCEEEEeCCCCCcCCCCEEEEEECCCCcE-EEEecccC
Confidence            6899999999999988876321000000 11121     00 246666654      58999999999764 3333210 


Q ss_pred             CCCcc------------ccccccccc---cCcceEEEEECCC-CeEEEEECCCc-------------------EEEEecc
Q 047036          406 DSPVL------------HWTQGHQFS---RGTNFQCFASTGD-GSIVVGSLDGK-------------------IRLYSKT  450 (634)
Q Consensus       406 ~s~V~------------~~~~g~~y~---~~~~fssva~s~d-G~IASGS~DGt-------------------IRLWD~~  450 (634)
                      ..+..            .|.....|.   ....+.++++++. +.|++++.++.                   |..+|..
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~  278 (668)
T 1kv9_A          199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD  278 (668)
T ss_dssp             CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC
Confidence            00100            010000000   1122344667765 58888887764                   9999998


Q ss_pred             cccccccccc--CCC-------CCeEEEEECCCCC---EEEE-EcCCcEEEEEcccccCCCCee
Q 047036          451 SMRQAKTAFP--GLG-------SPITHVDVTYDGK---WILG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       451 t~r~akt~L~--GH~-------d~ItsVdfSpDGk---~LlS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      +++ .+-.++  .|.       .++...++..||+   .|+. +.+++|.++|..    +|+.+
T Consensus       279 tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l  337 (668)
T 1kv9_A          279 TGK-LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT----NGKLI  337 (668)
T ss_dssp             TCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT----TCCEE
T ss_pred             CCc-eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC----CCCEe
Confidence            875 443332  232       4556667777997   5666 889999999975    67766

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.68  E-value=4.2  Score=41.75  Aligned_cols=145  Identities=6%  Similarity=-0.052  Sum_probs=83.1

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      .++.++.+....      +.|+.+++..+.............  .-+++.+.+       +.+.++-...++|.+.++..
T Consensus        83 ~~~~ly~~D~~~------~~I~r~~~~g~~~~~~~~~~~~~p--~glavd~~~-------g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           83 RRELVFWSDVTL------DRILRANLNGSNVEEVVSTGLESP--GGLAVDWVH-------DKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             TTTEEEEEETTT------TEEEEEETTSCSCEEEECSSCSCC--CEEEEETTT-------TEEEEEETTTTEEEEEETTS
T ss_pred             cccEEEEEeccC------CceEEEecCCCCceEEEeCCCCCc--cEEEEecCC-------CeEEEEcCCCCeEEEEcCCC
Confidence            344455555443      689999998665433332221211  123777651       34556667788999999875


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEE-ECC-CcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVG-SLD-GKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASG-S~D-GtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                      ...  ..+..  .            .-..-..+++.| +|+|... ... +.|..++..+. .....+..--..-++|+|
T Consensus       148 ~~~--~~l~~--~------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~  210 (349)
T 3v64_C          148 AHR--KVLLW--Q------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTI  210 (349)
T ss_dssp             CSC--EEEEC--T------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEE
T ss_pred             Cce--EEEEe--C------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEE
Confidence            432  22210  0            001235678887 5665544 344 78888887652 222222222345689999


Q ss_pred             CCCCCEEE-E-EcCCcEEEEEc
Q 047036          472 TYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       472 SpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      +|++..|. + +..+.|..+|.
T Consensus       211 d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          211 DYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEET
T ss_pred             eCCCCEEEEEECCCCEEEEEeC
Confidence            99777664 5 66778888885

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.62  E-value=2.2  Score=44.52  Aligned_cols=153  Identities=5%  Similarity=-0.057  Sum_probs=85.0

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR  386 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t  386 (634)
                      |.++-+...++.++++....      +.|+.+++..+.....+.......  .-+++.+..       +.+.++-...++
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~------~~I~r~~~~g~~~~~~~~~~~~~p--~glavd~~~-------g~lY~~d~~~~~  182 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTL------DRILRANLNGSNVEEVVSTGLESP--GGLAVDWVH-------DKLYWTDSGTSR  182 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTT------TEEEEEETTSCCEEEEECSSCSCC--CCEEEETTT-------TEEEEEETTTTE
T ss_pred             cEEEEEecCCCeEEEEeCCC------CcEEEEecCCCCcEEEEeCCCCCc--cEEEEEeCC-------CeEEEEcCCCCe
Confidence            44433332444455555443      689999998665433332221111  123677651       345566667788


Q ss_pred             EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEE-CC-CcEEEEeccccccccccccCCC
Q 047036          387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGS-LD-GKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS-~D-GtIRLWD~~t~r~akt~L~GH~  463 (634)
                      |.+.++.....  ..+...              .-..-..+++.| +|+|.... .. +.|..++..+. .....+...-
T Consensus       183 I~~~~~dg~~~--~~l~~~--------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~  245 (386)
T 3v65_B          183 IEVANLDGAHR--KVLLWQ--------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHL  245 (386)
T ss_dssp             EEECBTTSCSC--EEEECS--------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSC
T ss_pred             EEEEeCCCCce--EEeecC--------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCC
Confidence            99888864322  222100              001235677876 45655543 33 68888887652 2222222223


Q ss_pred             CCeEEEEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          464 SPITHVDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       464 d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      ..-++|+|+|++..|. + +..+.|..+|.
T Consensus       246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          246 FWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             CCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            3568999998777664 5 66778888884

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.44  E-value=3.6  Score=41.72  Aligned_cols=64  Identities=14%  Similarity=0.050  Sum_probs=44.4

Q ss_pred             ceEEEEECCCCeEEEEECCCcEEEEecccccccc-cccc--CCCCCeEEEEECCCCCEEEEEcCCcE
Q 047036          423 NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK-TAFP--GLGSPITHVDVTYDGKWILGTTDTYL  486 (634)
Q Consensus       423 ~fssva~s~dG~IASGS~DGtIRLWD~~t~r~ak-t~L~--GH~d~ItsVdfSpDGk~LlSS~D~tI  486 (634)
                      .+..++++++|.+..++.+|.|++++...++.-. ...+  .++..+.+|.+.|+++.++++.++.|
T Consensus       206 ~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i  272 (327)
T 2xbg_A          206 RLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL  272 (327)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred             ccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE
Confidence            4677888889988888889999988422222111 1122  13456999999999998888878876

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.96  E-value=1.1  Score=49.43  Aligned_cols=168  Identities=11%  Similarity=0.034  Sum_probs=93.3

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-------CCcE-----------EEE-EeccCCCcceeEEEEecC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-------TGKI-----------VTE-WKFEKDGTDITMRDITND  366 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-------TGK~-----------V~~-lkgH~~~V~I~vvsfsPd  366 (634)
                      .|.++.++..++.++++.-.+      +.|+++|+.       +|++           +.. +.......+ .-++|+|+
T Consensus       248 ~p~giavdp~~g~LYvtd~~~------g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p-~~ia~~p~  320 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEK------GQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE-FQIFIHPT  320 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTT------TEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC-EEEEECTT
T ss_pred             CceEEEEcCCCCeEEEEECCC------CEEEEEecccccccccCceeecccccccccccceeEecCCCCCc-eEEEEcCC
Confidence            355555544456666666553      589999998       7765           233 222222222 23599998


Q ss_pred             CCCCCCCCCCE-EEEEeCCCeEEEEEcCCCCceE---EecccCCCCcccccccc--ccccCcceEEEEEC-------CCC
Q 047036          367 TKSSQLDPSES-TFLGLDDNRLCQWDMRDRSGIV---QNMVKGDSPVLHWTQGH--QFSRGTNFQCFAST-------GDG  433 (634)
Q Consensus       367 ~K~~q~~~g~~-laSGS~D~tIklWD~R~~~~~V---q~l~gh~s~V~~~~~g~--~y~~~~~fssva~s-------~dG  433 (634)
                              +.. .++=+..++|+++|+......+   .++.|.... ..+..|.  .-.-..+...++..       .+|
T Consensus       321 --------G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~-~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g  391 (496)
T 3kya_A          321 --------GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ-SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY  391 (496)
T ss_dssp             --------SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB-CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE
T ss_pred             --------CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC-CcccCCcccccccCCCeEEEEEccccccccCCC
Confidence                    564 5555678999997764322111   233332000 0011111  00112222234444       466


Q ss_pred             eEEEE-ECCCcEEEEeccccccccccccCC--------------C----------CCeEEEEECCC-CCEEEE-EcCCcE
Q 047036          434 SIVVG-SLDGKIRLYSKTSMRQAKTAFPGL--------------G----------SPITHVDVTYD-GKWILG-TTDTYL  486 (634)
Q Consensus       434 ~IASG-S~DGtIRLWD~~t~r~akt~L~GH--------------~----------d~ItsVdfSpD-Gk~LlS-S~D~tI  486 (634)
                      .|.++ +....||.++..+ .  .+++-|.              .          ..-.+|+++++ |...++ +..+.|
T Consensus       392 ~lyVaD~~N~rIr~i~~~G-~--v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          392 DFYFVDRLNFCVRKVTPEG-I--VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             EEEEEEGGGTEEEEECTTC-B--EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEeCCC-C--EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence            65554 5678999999543 2  2233221              1          23579999997 888888 888999


Q ss_pred             EEEEcc
Q 047036          487 ILICTL  492 (634)
Q Consensus       487 rLWD~~  492 (634)
                      |.+++.
T Consensus       469 rki~~~  474 (496)
T 3kya_A          469 RTISME  474 (496)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            999864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.95  E-value=2.9  Score=42.42  Aligned_cols=66  Identities=11%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             ceEEEEECCCCeEEEEECCCcEEEEecccccccccccc---CCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036          423 NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP---GLGSPITHVDVTYDGKWILGTTDTYLILIC  490 (634)
Q Consensus       423 ~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~---GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD  490 (634)
                      .+.++++.+++.|+.++.+|.| ++....++ .=+.+.   ++...+.+|.|.+++++++.+.+++|.-++
T Consensus       251 ~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ-TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             CEEEEEESSSSCEEEEESTTCE-EEESSTTS-SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             ceEEEEecCCCEEEEEeCCCeE-EEeCCCCc-ccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            4678888888876666678877 34333332 112222   234568899998888877778899876665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.87  E-value=6.1  Score=39.78  Aligned_cols=153  Identities=5%  Similarity=-0.097  Sum_probs=82.8

Q ss_pred             cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC---CcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036          307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET---GKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL  382 (634)
Q Consensus       307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT---GK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS  382 (634)
                      |.++.+...++.+++++...      +.|+.+|+.+   |..+.. +...-..+  .-+++.+.+       +.+.++-.
T Consensus        32 p~g~~~d~~~~~ly~~D~~~------~~I~~~~~~g~~~~~~~~~~~~~~~~~p--~glavd~~~-------~~ly~~d~   96 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQ------RMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAVDWIH-------SNIYWTDS   96 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTT------TEEEEEEC--------CEEEECSSCSCC--CEEEEETTT-------TEEEEEET
T ss_pred             eEEEEEEeCCCEEEEEECCC------CcEEEEECCCCCCCcccEEEEeCCCCCc--CEEEEeecC-------CeEEEEEC
Confidence            44433322344455555543      6899999885   233233 22211121  233666641       23445556


Q ss_pred             CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECC--CcEEEEeccccccccccc
Q 047036          383 DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLD--GKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       383 ~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~D--GtIRLWD~~t~r~akt~L  459 (634)
                      ..++|.+.|+....  +..+...              .-..-..++..| +|+|..+...  +.|...+..+. ..+..+
T Consensus        97 ~~~~I~~~~~~g~~--~~~~~~~--------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~  159 (316)
T 1ijq_A           97 VLGTVSVADTKGVK--RKTLFRE--------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV  159 (316)
T ss_dssp             TTTEEEEEETTSSS--EEEEEEC--------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE
T ss_pred             CCCEEEEEeCCCCc--eEEEEEC--------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE
Confidence            78899999987432  2222100              001235778886 5666555443  68888887542 122222


Q ss_pred             cCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          460 PGLGSPITHVDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      ...-...++|+++|++..|. + +..+.|..+|.
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            22234578999999887765 4 56778988885

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.73  E-value=3.8  Score=41.30  Aligned_cols=157  Identities=13%  Similarity=0.112  Sum_probs=89.9

Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC---CceEEecccCCCCcc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR---SGIVQNMVKGDSPVL  410 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~---~~~Vq~l~gh~s~V~  410 (634)
                      .|+..|+.+++......+-...   .-++|.+..       +.+.++-...++|+++|+...   ... ..+..  .   
T Consensus        11 ~I~~i~~~~~~~~~~~~~~~~p---~g~~~d~~~-------~~ly~~D~~~~~I~~~~~~g~~~~~~~-~~~~~--~---   74 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIPNLRNV---VALDTEVAS-------NRIYWSDLSQRMICSTQLDRAHGVSSY-DTVIS--R---   74 (316)
T ss_dssp             SEEEEETTSCCCEEEECSCSSE---EEEEEETTT-------TEEEEEETTTTEEEEEEC--------C-EEEEC--S---
T ss_pred             eEEEEECCCcceEehhcCCCce---EEEEEEeCC-------CEEEEEECCCCcEEEEECCCCCCCccc-EEEEe--C---
Confidence            5999999988776655443332   234888751       345566677899999998751   111 11110  0   


Q ss_pred             ccccccccccCcceEEEEECC-CCeEEEE-ECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-EEc-C-Cc
Q 047036          411 HWTQGHQFSRGTNFQCFASTG-DGSIVVG-SLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-GTT-D-TY  485 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~-dG~IASG-S~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-SS~-D-~t  485 (634)
                          +    . ..-..+|+.+ ++.|+.+ ...+.|.++|..+. ..+..+........+|++.|++.+|. +.. . ..
T Consensus        75 ----~----~-~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~  144 (316)
T 1ijq_A           75 ----D----I-QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK  144 (316)
T ss_dssp             ----S----C-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             ----C----C-CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe
Confidence                0    0 0124567764 5566544 67789999998753 23344443334669999999777664 433 2 56


Q ss_pred             EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036          486 LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD  524 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~  524 (634)
                      |...+.     +|.....+...   ....|.-|.+.|..
T Consensus       145 I~~~~~-----dG~~~~~~~~~---~~~~P~gla~d~~~  175 (316)
T 1ijq_A          145 IKKGGL-----NGVDIYSLVTE---NIQWPNGITLDLLS  175 (316)
T ss_dssp             EEEEET-----TSCCEEEEECS---SCSCEEEEEEETTT
T ss_pred             EEEEcC-----CCCCeEEEEEC---CCCCceEEEEeccC
Confidence            776664     45544434211   12346677777644

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.64  E-value=5.1  Score=42.49  Aligned_cols=144  Identities=12%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             CcEEEEeC--CCCcEEEEEecc-----C--CCcceeEEEE--ecCCCCCCCCCCC-EEEEEeCCCeEEEEEcCCC-----
Q 047036          333 PGVQQLDI--ETGKIVTEWKFE-----K--DGTDITMRDI--TNDTKSSQLDPSE-STFLGLDDNRLCQWDMRDR-----  395 (634)
Q Consensus       333 ~TIrlWDl--eTGK~V~~lkgH-----~--~~V~I~vvsf--sPd~K~~q~~~g~-~laSGS~D~tIklWD~R~~-----  395 (634)
                      ++|+++++  .+++ +..+..-     .  ..+  .=+|+  +|..       +. +++....++.+..|++...     
T Consensus        99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~p--yGlcly~~~~~-------g~~yafV~~k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEV--YGFTLYHSQKT-------GKYYAMVTGKEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             CEEEEEEECTTTCC-EEECSCTTSCEECCCSSC--CCEEEEECTTT-------CCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred             CeEEEEEECCCCCc-eeeccccccCcCCCCCCe--eEEEEEecCCC-------CcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence            68999955  6665 5555210     1  111  22355  5541       22 6888888899999998431     


Q ss_pred             -CceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecc--cc--ccccccc--cCCCCCeEE
Q 047036          396 -SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKT--SM--RQAKTAF--PGLGSPITH  468 (634)
Q Consensus       396 -~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~--t~--r~akt~L--~GH~d~Its  468 (634)
                       .++|+++.-          +     .-.-.|++-...|+|.+|-.+.-|..||..  +.  +.....+  .++...|-+
T Consensus       169 ~~~lVR~f~l----------g-----sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEG  233 (355)
T 3amr_A          169 SGKKVRAFKM----------N-----SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEG  233 (355)
T ss_dssp             EEEEEEEEEC----------S-----SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEE
T ss_pred             cceEEEEecC----------C-----CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcce
Confidence             123444421          1     112345555567899999999888888854  11  1122222  344457899


Q ss_pred             EEE--CCCCC-EEEEEc--CCcEEEEEcccccCCCCeeeee
Q 047036          469 VDV--TYDGK-WILGTT--DTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       469 Vdf--SpDGk-~LlSS~--D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      |++  .++|+ ||++|+  ++++.+||..   ...+.+..|
T Consensus       234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~---~~~~~vg~f  271 (355)
T 3amr_A          234 LTIYYAADGKGYLMASSQGNSSYAIYDRQ---GKNKYVADF  271 (355)
T ss_dssp             EEEEECGGGCEEEEEEEGGGTEEEEEESS---TTCCEEEEE
T ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEECC---CCCcEEEEE
Confidence            999  78888 888755  7899999964   234444444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=93.63  E-value=2.3  Score=44.86  Aligned_cols=173  Identities=12%  Similarity=0.037  Sum_probs=97.2

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-Eec----cCCCcceeEEEE---ecCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKF----EKDGTDITMRDI---TNDTKSSQL  372 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkg----H~~~V~I~vvsf---sPd~K~~q~  372 (634)
                      .+...-|.+..++..++.+++++-..      ++|..||+..|..+.. +.+    ....+.+.-+.+   .|+      
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~------g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~------   76 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYK------GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS------   76 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTT------TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC------
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccC------CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC------
Confidence            34556788888877667667666543      7999999987765544 222    111111123355   454      


Q ss_pred             CCCCEEEEEe-------------CCCeEEEEEcC---CCCce-EEecccCCCCccccccccccccCcceEEEEECCCCeE
Q 047036          373 DPSESTFLGL-------------DDNRLCQWDMR---DRSGI-VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI  435 (634)
Q Consensus       373 ~~g~~laSGS-------------~D~tIklWD~R---~~~~~-Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I  435 (634)
                        +.++++.-             .++.|..+|+.   +++.+ ...|......+.. ..+..+   ..+.-++..++|.+
T Consensus        77 --grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~-~~g~~~---~~~nDvavD~~Gna  150 (334)
T 2p9w_A           77 --KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEK-KAGKRP---FGVVQSAQDRDGNS  150 (334)
T ss_dssp             --CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHH-HHSSCC---EEEEEEEECTTSCE
T ss_pred             --CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccc-cccccc---cCCceeEECCCCCE
Confidence              45555432             27889999998   55421 1122110000000 000011   12456788888854


Q ss_pred             -EEEECC-CcEEEEecccccccccc---c--cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          436 -VVGSLD-GKIRLYSKTSMRQAKTA---F--PGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       436 -ASGS~D-GtIRLWD~~t~r~akt~---L--~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                       ++++.- +.|-..|..+. ....-   .  ....--.++|+++|||+.|+. ...+.|.-+|+.
T Consensus       151 YVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          151 YVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence             447777 88888886642 12111   1  111123579999999998887 338888888854

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=93.51  E-value=1.6  Score=43.38  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             CCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccc
Q 047036          340 IETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFS  419 (634)
Q Consensus       340 leTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~  419 (634)
                      ..+.+++.+|..+.. .  .-++++|+        +.+.++-...++|.+||+..+  ....+.                
T Consensus        19 ~~~~~~~~~~p~~~~-p--egia~~~~--------g~lyv~d~~~~~I~~~d~~g~--~~~~~~----------------   69 (306)
T 2p4o_A           19 LAPAKIITSFPVNTF-L--ENLASAPD--------GTIFVTNHEVGEIVSITPDGN--QQIHAT----------------   69 (306)
T ss_dssp             CCCEEEEEEECTTCC-E--EEEEECTT--------SCEEEEETTTTEEEEECTTCC--EEEEEE----------------
T ss_pred             CCCceEeEeCCCCCC-c--ceEEECCC--------CCEEEEeCCCCeEEEECCCCc--eEEEEe----------------
Confidence            345678888854432 1  23478887        567777778999999998753  222211                


Q ss_pred             cCcceEEEEECCCCeEEEEE--CCC-cEEEEeccccccccc--cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          420 RGTNFQCFASTGDGSIVVGS--LDG-KIRLYSKTSMRQAKT--AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       420 ~~~~fssva~s~dG~IASGS--~DG-tIRLWD~~t~r~akt--~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      ......+++++++|.|+++.  .++ .|..+|..+++ ...  .+++ .....++++.+++..+++ +..+.|..+|.
T Consensus        70 ~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           70 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-EEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence            01135678899999666555  333 35556755543 222  2222 334577888887776666 45788888885

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.37  E-value=2.7  Score=44.72  Aligned_cols=158  Identities=10%  Similarity=0.053  Sum_probs=84.5

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC-EEEEEeCCCeEEEEEcCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE-STFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~-~laSGS~D~tIklWD~R~  394 (634)
                      ++.++++...+      +.|+++|+.+++....+......-+ .-++|+|+        ++ +.++-...++|.++|...
T Consensus       237 ~g~lyv~d~~~------~~V~~~~~~~~~~~~~~~~~~~~~P-~gia~~pd--------G~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          237 NGELYFNSWNA------GQVFRYDFTTQETTPLFTIQDSGWE-FHIQFHPS--------GNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TCCEEEEETTT------TEEEEEETTTTEEEEEEECSSSSCC-EEEEECTT--------SSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEECCC------CEEEEEECCCCcEEEEEEcCCCCcc-eeEEEcCC--------CCEEEEEECCCCEEEEEeCCc
Confidence            45556665443      5899999987765333322211112 23499998        56 556666789999988763


Q ss_pred             C-Cce--EEecccCCCCcccccccc--ccccCcceEEEEEC--------CCCeEEEE-ECCCcEEEEeccccccccccc-
Q 047036          395 R-SGI--VQNMVKGDSPVLHWTQGH--QFSRGTNFQCFAST--------GDGSIVVG-SLDGKIRLYSKTSMRQAKTAF-  459 (634)
Q Consensus       395 ~-~~~--Vq~l~gh~s~V~~~~~g~--~y~~~~~fssva~s--------~dG~IASG-S~DGtIRLWD~~t~r~akt~L-  459 (634)
                      . +..  ++.+.+.... ..+..+.  .-....+...++..        ++|.|.++ ...+.||.+|..+ + ..+.. 
T Consensus       302 ~~~~~~~~~~~ag~~g~-~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G-~-v~~~~g  378 (430)
T 3tc9_A          302 KTKRLTTPYIVCGQQGA-KDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG-R-VTTFAG  378 (430)
T ss_dssp             TTTEECCCEEEEECTTC-BCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS-E-EEEEEE
T ss_pred             ccccccceEEEeccCCC-CCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC-c-EEEEEe
Confidence            2 111  2233221000 0000110  00112223244543        45766655 4567899998543 2 22211 


Q ss_pred             ------cC--C--------CCCeEEEEECC-CCCEEEE-EcCCcEEEEEc
Q 047036          460 ------PG--L--------GSPITHVDVTY-DGKWILG-TTDTYLILICT  491 (634)
Q Consensus       460 ------~G--H--------~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~  491 (634)
                            .|  .        -..-.+|+++| +|..+++ +..+.|+.++.
T Consensus       379 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          379 RGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             CCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence                  11  0        12468999999 5777777 67788888874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.17  E-value=2.1  Score=47.37  Aligned_cols=149  Identities=10%  Similarity=0.116  Sum_probs=84.3

Q ss_pred             eEEeC--CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCc-ceeEEEE-------ecCCCCCCCCCCCEEEE
Q 047036          311 LLMRG--ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGT-DITMRDI-------TNDTKSSQLDPSESTFL  380 (634)
Q Consensus       311 mL~~~--D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V-~I~vvsf-------sPd~K~~q~~~g~~laS  380 (634)
                      |.+++  +.+++++....      +.|++.|++++++..-+....... ...-++|       +++        +..++.
T Consensus       144 la~dp~~~~~Lyv~~~~~------~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--------G~~lyv  209 (496)
T 3kya_A          144 LAFDPLNKDHLYICYDGH------KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--------AEYMIV  209 (496)
T ss_dssp             EEEETTEEEEEEEEEETE------EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--------TCEEEE
T ss_pred             EEEccCCCCEEEEEECCC------CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--------CCEEEE
Confidence            44453  34555555432      479999999777655444322111 1234588       887        565666


Q ss_pred             EeCCC-------eEEEEEcCCCCceE-----EecccCCCCccccccccccccCcceEEEEECC-CCeEEE-EECCCcEEE
Q 047036          381 GLDDN-------RLCQWDMRDRSGIV-----QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVV-GSLDGKIRL  446 (634)
Q Consensus       381 GS~D~-------tIklWD~R~~~~~V-----q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IAS-GS~DGtIRL  446 (634)
                      +...+       .|.+.+....+...     +.+.             .|.+   ...++.+| +|+|.+ -...+.|..
T Consensus       210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-------------~~~~---p~giavdp~~g~LYvtd~~~g~V~r  273 (496)
T 3kya_A          210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-------------AYKQ---CNGATIHPINGELYFNSYEKGQVFR  273 (496)
T ss_dssp             EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-------------EESC---CCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             EeCCCCCcccCceEEEEecCCCCceeecccceeec-------------cCCC---ceEEEEcCCCCeEEEEECCCCEEEE
Confidence            65543       36677633311110     1111             1211   13457788 566554 557778999


Q ss_pred             Eecc-------ccccc--------------cccccCCCCCeEEEEECCCCCE-EEE-EcCCcEEEEEc
Q 047036          447 YSKT-------SMRQA--------------KTAFPGLGSPITHVDVTYDGKW-ILG-TTDTYLILICT  491 (634)
Q Consensus       447 WD~~-------t~r~a--------------kt~L~GH~d~ItsVdfSpDGk~-LlS-S~D~tIrLWD~  491 (634)
                      +|+.       ++. .              ...++ -+..-++|+|+|+|++ .++ +..+.|+.++.
T Consensus       274 ~d~~~~~~~~~tg~-~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          274 LDLVDYFKTIKNGG-SWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             ECHHHHHHHHHTTC-CCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EecccccccccCce-eecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            9986       332 1              01122 2345689999999995 445 77889999774

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.48  E-value=8.9  Score=38.48  Aligned_cols=138  Identities=11%  Similarity=0.145  Sum_probs=80.1

Q ss_pred             CcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEecccCCCC
Q 047036          333 PGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVKGDSP  408 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~gh~s~  408 (634)
                      ..|+..|+. |++++++.  |..+   ..-+++.++        +.++++.=.+++|.+.++.....  .+....   -+
T Consensus        49 ~~I~~ld~~-g~v~~~i~l~g~~D---~EGIa~~~~--------g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~---~~  113 (255)
T 3qqz_A           49 AAIVEMTTN-GDLIRTIPLDFVKD---LETIEYIGD--------NQFVISDERDYAIYVISLTPNSEVKILKKIK---IP  113 (255)
T ss_dssp             EEEEEEETT-CCEEEEEECSSCSS---EEEEEECST--------TEEEEEETTTTEEEEEEECTTCCEEEEEEEE---CC
T ss_pred             CeEEEEeCC-CCEEEEEecCCCCC---hHHeEEeCC--------CEEEEEECCCCcEEEEEcCCCCeeeeeeeec---cc
Confidence            689999998 99999974  3333   123355555        44445544678899888765442  122221   00


Q ss_pred             ccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--cccccc-----c--CCCCCeEEEEECCCCCEE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--QAKTAF-----P--GLGSPITHVDVTYDGKWI  478 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~akt~L-----~--GH~d~ItsVdfSpDGk~L  478 (634)
                      +     + ....+..|..+|+++.+ +|.++......+||...+..  ...+.+     .  .+-.-+.+|+|.|.-..|
T Consensus       114 ~-----~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l  187 (255)
T 3qqz_A          114 L-----Q-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL  187 (255)
T ss_dssp             C-----S-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred             c-----c-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence            0     0 11235568999999987 77777776666666654210  001111     0  112246899999876554


Q ss_pred             EE-E-cCCcEEEEEc
Q 047036          479 LG-T-TDTYLILICT  491 (634)
Q Consensus       479 lS-S-~D~tIrLWD~  491 (634)
                      +. | ..+.|..+|.
T Consensus       188 liLS~~s~~L~~~d~  202 (255)
T 3qqz_A          188 LVLSHESRALQEVTL  202 (255)
T ss_dssp             EEEETTTTEEEEECT
T ss_pred             EEEECCCCeEEEEcC
Confidence            44 4 4567777774

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.23  E-value=12  Score=43.47  Aligned_cols=161  Identities=10%  Similarity=-0.019  Sum_probs=88.1

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEe-C
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSESTFLGL-D  383 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~  383 (634)
                      .|.++.+.-..++++++....      ++|++.|+. |+.++.+-. .-.. + .-+++.|.        ...|+-.- .
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~------~~I~v~~ld-G~~~~~l~~~~l~~-P-~gIaVDp~--------~g~LYwtD~g  534 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVL------GTVSVADTK-GVKRKTLFRENGSK-P-RAIVVDPV--------HGFMYWTDWG  534 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTT------TEEEEEETT-SSSEEEEEECTTCC-E-EEEEEETT--------TTEEEEEECS
T ss_pred             CcceeeeeecCCcEEEEecCC------CeEEEEeCC-CCeEEEEEeCCCCC-c-ceEEEecC--------CCCEEEecCC
Confidence            566644433445666666554      689999997 555555533 2222 2 23478886        23454443 3


Q ss_pred             C-CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEE-ECCCcEEEEecccccccccccc
Q 047036          384 D-NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVG-SLDGKIRLYSKTSMRQAKTAFP  460 (634)
Q Consensus       384 D-~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASG-S~DGtIRLWD~~t~r~akt~L~  460 (634)
                      . ..|.+.++....  +..+... .          .   ..-..+++++ .++|+.+ +..+.|+..|+.+. .....+.
T Consensus       535 ~~~~I~~~~~dG~~--~~~lv~~-~----------l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~  597 (791)
T 3m0c_C          535 TPAKIKKGGLNGVD--IYSLVTE-N----------I---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILE  597 (791)
T ss_dssp             SSCEEEEEETTSCC--EEEEECS-S----------C---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEE
T ss_pred             CCCeEEEEecCCCc--eEEEEeC-C----------C---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEec
Confidence            3 788888886432  2333210 0          0   1135678875 4577665 45578999998763 2333333


Q ss_pred             CCC--CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          461 GLG--SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       461 GH~--d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      +.+  ....+|++..+ +..++ ...+.|...|..    +|+.+..+.
T Consensus       598 ~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~----tG~~~~~l~  640 (791)
T 3m0c_C          598 DEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL----TGSDVNLLA  640 (791)
T ss_dssp             CTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETT----TCCCCEEEE
T ss_pred             CCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCC----CCcceEEee
Confidence            211  23457777433 33345 566788888753    455555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=92.08  E-value=13  Score=38.69  Aligned_cols=163  Identities=5%  Similarity=-0.084  Sum_probs=89.2

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-  384 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-  384 (634)
                      .|.++.+.-..++++++....      +.|.+.++........+...-...  .-+++.|..       +.+.++-... 
T Consensus       160 ~p~glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~~~~l~~P--~giavdp~~-------g~ly~td~~~~  224 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLLWQSLEKP--RAIALHPME-------GTIYWTDWGNT  224 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEECSSCSCE--EEEEEETTT-------TEEEEEECSSS
T ss_pred             CccEEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEeecCCCCCC--cEEEEEcCC-------CeEEEeccCCC
Confidence            465544433455666666553      589999987433222222222221  234778762       3344454445 


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEE-ECCCcEEEEeccccccccccccCC
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVG-SLDGKIRLYSKTSMRQAKTAFPGL  462 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASG-S~DGtIRLWD~~t~r~akt~L~GH  462 (634)
                      +.|.+.|+.....  ..+.. ..             -..-..+++++ +++|..+ +..+.|+.+|..+. .....+...
T Consensus       225 ~~I~r~~~dG~~~--~~~~~-~~-------------~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~  287 (386)
T 3v65_B          225 PRIEASSMDGSGR--RIIAD-TH-------------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQG  287 (386)
T ss_dssp             CEEEEEETTSCSC--EEEEC-SS-------------CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSS
T ss_pred             CEEEEEeCCCCCc--EEEEE-CC-------------CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECC
Confidence            7899998875322  22210 00             00125678885 4566554 56678999998753 223333322


Q ss_pred             CCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          463 GSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       463 ~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      .....+|++. .|....+ ...+.|..++..    +|+.+..+.
T Consensus       288 ~~~P~giav~-~~~ly~td~~~~~V~~~~~~----~G~~~~~i~  326 (386)
T 3v65_B          288 LPHPFAITVF-EDSLYWTDWHTKSINSANKF----TGKNQEIIR  326 (386)
T ss_dssp             CSSEEEEEEE-TTEEEEEETTTTEEEEEETT----TCCSCEEEE
T ss_pred             CCCceEEEEE-CCEEEEeeCCCCeEEEEECC----CCcceEEEc
Confidence            3346889993 4444445 667788888843    465555554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.83  E-value=23  Score=41.12  Aligned_cols=144  Identities=6%  Similarity=-0.072  Sum_probs=81.1

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCC----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETG----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ++.++++....      +.|+.+++...    .....+...-..+  .-+++.+.+       +.+.++-+..++|.+.|
T Consensus       435 ~~~lY~sD~~~------~~I~~~~l~g~~~~~~~~~vi~~~l~~P--~GLAvD~~~-------~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          435 SNRIYWSDLSQ------RMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAVDWIH-------SNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             TTEEEEEETTT------TEEEEEEC--------CEEEECSSCSCC--CEEEEETTT-------TEEEEEETTTTEEEEEE
T ss_pred             CCeeEEeeccc------eeEEEEeccCCCCCcceeEEEecCCCCc--ceeeeeecC-------CcEEEEecCCCeEEEEe
Confidence            34444555443      57999998742    1122222121221  224777652       24555667788999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEEC--CCcEEEEeccccccccccccCCCCCeEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSL--DGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~--DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      +..+.  +..|...              .-..-..+|+.+. |+|+....  .+.|...++.+. ..+..+...-...++
T Consensus       500 ldG~~--~~~l~~~--------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~G  562 (791)
T 3m0c_C          500 TKGVK--RKTLFRE--------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNG  562 (791)
T ss_dssp             TTSSS--EEEEEEC--------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEE
T ss_pred             CCCCe--EEEEEeC--------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceE
Confidence            87533  2333210              0012357788775 67666543  368998887763 233334433356799


Q ss_pred             EEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          469 VDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       469 VdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      |+|.|.+..|. + +...+|...++
T Consensus       563 LavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          563 ITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEec
Confidence            99998777665 4 55678888885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=91.62  E-value=13  Score=37.80  Aligned_cols=143  Identities=6%  Similarity=-0.090  Sum_probs=79.8

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      +.+..+....      +.|+.+++..+..... +...-...  .-+++.+..       +.+.++-...++|.+.++...
T Consensus        47 ~~lyw~D~~~------~~I~r~~~~g~~~~~~~~~~~l~~p--~glavd~~~-------g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           47 GLIYWSDVSE------EAIKRTEFNKTESVQNVVVSGLLSP--DGLACDWLG-------EKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             TEEEEEETTT------TEEEEEETTSSSCCCEEEEECCSCC--CEEEEETTT-------TEEEEEETTTTEEEEEETTSC
T ss_pred             CEEEEEECCC------CcEEEEEccCCCceEEEEcCCCCCc--cEEEEEcCC-------CeEEEEECCCCEEEEEECCCC
Confidence            3445555443      6899999886632111 11111111  123666641       345566667789999998753


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEE--CCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGS--LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT  472 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS--~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS  472 (634)
                      ..  ..+..  .            .-..-..+++.| +|+|+.+.  ..+.|...+..+. .....+..--..-++|+|+
T Consensus       112 ~~--~~l~~--~------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd  174 (318)
T 3sov_A          112 LR--KVLFW--Q------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLD  174 (318)
T ss_dssp             SC--EEEEC--S------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEE
T ss_pred             cE--EEEEe--C------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEe
Confidence            22  22210  0            001235677776 46766655  3578888887652 1222222222345899999


Q ss_pred             CCCCEEE-E-EcCCcEEEEEc
Q 047036          473 YDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       473 pDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      |++..|. + +..+.|..+|.
T Consensus       175 ~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          175 YEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             TTTTEEEEEETTTTEEEEEET
T ss_pred             ccCCEEEEEECCCCEEEEEcC
Confidence            9777664 5 66788888885

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=91.05  E-value=17  Score=38.08  Aligned_cols=144  Identities=6%  Similarity=-0.065  Sum_probs=80.1

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCC----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETG----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ++.+..+....      +.|+.+++..+    .....+...-...  .-+++.+..       +.+.++-...++|.+.|
T Consensus       123 ~~~lywsD~~~------~~I~~~~~~g~~~~~~~~~~~~~~~~~p--~glavD~~~-------~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          123 SNRIYWSDLSQ------RMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAVDWIH-------SNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             TTEEEEEETTT------TEEEEEEC------CCCEEEECSSCSCE--EEEEEETTT-------TEEEEEETTTTEEEEEC
T ss_pred             cCceEEEecCC------CeEEEEEcccCCCCCcceEEEeCCCCCc--ccEEEEecC-------CceEEEECCCCeEEEEe
Confidence            34445555443      57999998752    1222222111111  233666531       34555666778999988


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEE--CCCcEEEEeccccccccccccCCCCCeEE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGS--LDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS--~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      +..+.  +..+...              .-..-..+++.| +|+|+...  ..+.|...++.+. .....+..--...++
T Consensus       188 ~~g~~--~~~l~~~--------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          188 TKGVK--RKTLFRE--------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNG  250 (400)
T ss_dssp             TTTCS--EEEEEEC--------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEE
T ss_pred             CCCCc--eEEEEeC--------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEE
Confidence            87543  2232100              001135678877 56766554  2478999987753 222333332346799


Q ss_pred             EEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          469 VDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       469 VdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                      |+|+|++..|. + +..++|..+|.
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          251 ITLDLLSGRLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEeC
Confidence            99999887775 4 66788888885

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=90.49  E-value=2.9  Score=46.62  Aligned_cols=68  Identities=6%  Similarity=-0.008  Sum_probs=43.0

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CC-----CeE
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DD-----NRL  387 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D-----~tI  387 (634)
                      ..++.+++.++.+.     .++++||+.+++-...-..+..... ...++.++        +.+++.|+ .+     +.+
T Consensus       251 ~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~d--------g~iyv~GG~~~~~~~~~~~  316 (656)
T 1k3i_A          251 DGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSD--------GRVFTIGGSWSGGVFEKNG  316 (656)
T ss_dssp             CTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTT--------SCEEEECCCCCSSSCCCCE
T ss_pred             CCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccc-cceEEecC--------CeEEEEeCcccCCcccccc
Confidence            35677888888654     4799999998864432111211111 12244455        56788887 44     689


Q ss_pred             EEEEcCCC
Q 047036          388 CQWDMRDR  395 (634)
Q Consensus       388 klWD~R~~  395 (634)
                      .+||+.+.
T Consensus       317 e~yd~~t~  324 (656)
T 1k3i_A          317 EVYSPSSK  324 (656)
T ss_dssp             EEEETTTT
T ss_pred             eEeCCCCC
Confidence            99999875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.39  E-value=1.5  Score=49.88  Aligned_cols=99  Identities=6%  Similarity=-0.061  Sum_probs=56.8

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEEC--CCcEEEEecccc
Q 047036          376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSL--DGKIRLYSKTSM  452 (634)
Q Consensus       376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~--DGtIRLWD~~t~  452 (634)
                      .+.++-...++|.+.|+....  +..+....              ...-..+++.|. |+|+.+..  .+.|..+++.+.
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~--------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVK--RKTLFREQ--------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCC--EEEECCCS--------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             cEEEEeccCCeEEEEecCCCc--eEEEEeCC--------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            455555667899999987532  23332100              001235677764 56555432  378888887652


Q ss_pred             ccccccccCCCCCeEEEEECCCCCEE-EE-EcCCcEEEEEc
Q 047036          453 RQAKTAFPGLGSPITHVDVTYDGKWI-LG-TTDTYLILICT  491 (634)
Q Consensus       453 r~akt~L~GH~d~ItsVdfSpDGk~L-lS-S~D~tIrLWD~  491 (634)
                       ..+..+..--...++|+|+|++.+| ++ +..+.|..+|+
T Consensus       530 -~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          530 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             -CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             -CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence             1222222222345799999986655 45 66778888885

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.97  E-value=8.2  Score=39.91  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CcEEEEeCCCCc-EEEEEe---ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC----C----CeEEEEEcCCCC-ce-
Q 047036          333 PGVQQLDIETGK-IVTEWK---FEKDGTDITMRDITNDTKSSQLDPSESTFLGLD----D----NRLCQWDMRDRS-GI-  398 (634)
Q Consensus       333 ~TIrlWDleTGK-~V~~lk---gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~----D----~tIklWD~R~~~-~~-  398 (634)
                      +.|+++| ..|+ .+..+.   ......  .-++|+|+  |++   +..|+.+..    +    +.|.+|++.... .+ 
T Consensus        49 g~I~~~d-~~G~~~~~~~~v~~~g~~g~--~gia~~pd--f~~---~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~  120 (354)
T 3a9g_A           49 GRLVLIS-PSGKKLVASFDVANVGEAGL--LGLALHPE--FPK---KSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK  120 (354)
T ss_dssp             TEEEEEC-SSCEEEEEECCCCCSTTCSE--EEEEECTT--TTT---SCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred             CEEEEEe-CCCceEeeccceeecCCCce--eeEEeCCC--CCc---CCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence            5799888 4576 233221   111222  23488887  433   345555443    3    788888876431 10 


Q ss_pred             -EEec-ccCCCCccccccccccccCcceEEEEECCCCeEEEEECC--------------CcEEEEeccccc-------cc
Q 047036          399 -VQNM-VKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD--------------GKIRLYSKTSMR-------QA  455 (634)
Q Consensus       399 -Vq~l-~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D--------------GtIRLWD~~t~r-------~a  455 (634)
                       .+.+ .+-...     ..|      .-..+++.++|+|.++..|              |.|.-+|..+.-       ..
T Consensus       121 ~~~~l~~~~~~~-----~~h------~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~  189 (354)
T 3a9g_A          121 EVKTLIDGIPGA-----YIH------NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS  189 (354)
T ss_dssp             EEEEEEEEEECC-----SSC------CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred             ccEEEEEcCCCC-----CCc------CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence             1111 000000     011      1235788999966554322              556666654310       01


Q ss_pred             cccccCCCCCeEEEEECC-CCCEEEE
Q 047036          456 KTAFPGLGSPITHVDVTY-DGKWILG  480 (634)
Q Consensus       456 kt~L~GH~d~ItsVdfSp-DGk~LlS  480 (634)
                      .....||..| .+|+|+| +|+..++
T Consensus       190 ~i~a~G~rnp-~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          190 PIWSYGHRNP-QGIDWHRASGVMVAT  214 (354)
T ss_dssp             CEEEECCSCC-CEEEECTTTCCEEEE
T ss_pred             cEEEEccCCc-ceEEEeCCCCCEEEE
Confidence            1112255554 6899999 7887777

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=88.81  E-value=19  Score=37.78  Aligned_cols=65  Identities=11%  Similarity=0.142  Sum_probs=41.6

Q ss_pred             eEEEEECCCCeEEEEEC------------------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcC
Q 047036          424 FQCFASTGDGSIVVGSL------------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTD  483 (634)
Q Consensus       424 fssva~s~dG~IASGS~------------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D  483 (634)
                      ..-++..++|.+.+++.                  .|.|.-||.  + .+...+.+.. .-++|+|||||++|. + |..
T Consensus       167 pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~~~~~~~~l~-~pNGia~spDg~~lYvadt~~  242 (355)
T 3sre_A          167 VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-DVRVVAEGFD-FANGINISPDGKYVYIAELLA  242 (355)
T ss_dssp             EEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-CCEEEEEEES-SEEEEEECTTSSEEEEEEGGG
T ss_pred             CceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-eEEEeecCCc-ccCcceECCCCCEEEEEeCCC
Confidence            45566777886655543                  244544554  2 2333344433 359999999998875 4 678


Q ss_pred             CcEEEEEcc
Q 047036          484 TYLILICTL  492 (634)
Q Consensus       484 ~tIrLWD~~  492 (634)
                      +.|..+++.
T Consensus       243 ~~I~~~~~~  251 (355)
T 3sre_A          243 HKIHVYEKH  251 (355)
T ss_dssp             TEEEEEEEC
T ss_pred             CeEEEEEEC
Confidence            899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=87.47  E-value=27  Score=35.62  Aligned_cols=162  Identities=6%  Similarity=-0.058  Sum_probs=90.5

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      .|.++.+.-..++++++....      +.|.+.++. |+....+ ...-.. + .-+++.|..       +.+.++-...
T Consensus       117 ~p~glavd~~~g~ly~~d~~~------~~I~~~~~d-G~~~~~l~~~~l~~-P-~~iavdp~~-------g~ly~td~~~  180 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGT------SRIEVANLD-GAHRKVLLWQSLEK-P-RAIALHPME-------GTIYWTDWGN  180 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTT------TEEEEEETT-SCSCEEEECTTCSC-E-EEEEEETTT-------TEEEEEECSS
T ss_pred             CccEEEEecCCCeEEEEcCCC------CeEEEEcCC-CCceEEEEeCCCCC-c-ceEEEecCc-------CeEEEeccCC
Confidence            465544433455666666553      589999987 4433333 222222 1 234788862       3455555555


Q ss_pred             -CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEE-ECCCcEEEEeccccccccccccC
Q 047036          385 -NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVG-SLDGKIRLYSKTSMRQAKTAFPG  461 (634)
Q Consensus       385 -~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASG-S~DGtIRLWD~~t~r~akt~L~G  461 (634)
                       +.|.+.|+....  ...+..  .       +     -..-..+++++ +++|..+ +..+.|+.+|..+. .....+..
T Consensus       181 ~~~I~r~~~dG~~--~~~~~~--~-------~-----~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~  243 (349)
T 3v64_C          181 TPRIEASSMDGSG--RRIIAD--T-------H-----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQ  243 (349)
T ss_dssp             SCEEEEEETTSCS--CEESCC--S-------S-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECS
T ss_pred             CCEEEEEeCCCCC--cEEEEE--C-------C-----CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeC
Confidence             889999886432  223310  0       0     01125678886 4566554 55678999998753 22333333


Q ss_pred             CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          462 LGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      ......+|++ ..|...++ ...+.|..++..    +|+.+..+.
T Consensus       244 ~~~~P~giav-~~~~ly~td~~~~~V~~~~~~----~G~~~~~i~  283 (349)
T 3v64_C          244 GLPHPFAITV-FEDSLYWTDWHTKSINSANKF----TGKNQEIIR  283 (349)
T ss_dssp             SCSSEEEEEE-ETTEEEEEETTTTEEEEEETT----TCCSCEEEE
T ss_pred             CCCCceEEEE-ECCEEEEecCCCCeEEEEEcc----CCCccEEec
Confidence            3345688999 34444455 567788888743    465555454

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.12  E-value=11  Score=41.23  Aligned_cols=119  Identities=15%  Similarity=0.106  Sum_probs=70.4

Q ss_pred             CCC-eEEEEECCCcEEEEecccccccc-ccccC-C-CCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecC
Q 047036          431 GDG-SIVVGSLDGKIRLYSKTSMRQAK-TAFPG-L-GSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       431 ~dG-~IASGS~DGtIRLWD~~t~r~ak-t~L~G-H-~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                      .+| .|+++- ++.||.-++.....-+ ..++. . -+.|..|.+||+|++||-..+.+|.+..+-    .+.     ..
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP----~~~-----~~   99 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVP----WGY-----SN   99 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECC----TTC-----SC
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEec----Ccc-----cc
Confidence            344 555554 4899988865321111 12332 1 236899999999999999888899999864    221     11


Q ss_pred             CCC---CCCCCceeEeecCCCcc--ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036          507 RMG---NKIPAPRLLKLTPLDSH--LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ  567 (634)
Q Consensus       507 h~~---~~~p~pr~L~L~Pe~~~--~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~  567 (634)
                      ..+   ..+.++|..++.|-...  .....+-|+|..-        ...+||+ ..|+.|.+||+.+
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~--------~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY--------RDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBG--------GGCEEEEEETTSCEEEEETTC
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccC--------CCCeEEEEecCCEEEEEEccc
Confidence            110   02244567777653210  1112355666532        3457777 7788999999986

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=87.07  E-value=4.6  Score=45.96  Aligned_cols=161  Identities=9%  Similarity=-0.076  Sum_probs=82.2

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      .|.++.+.-..++++++....      ++|.+.|+.. +.+..+-. .....  .-+++.|..       +.+.++-...
T Consensus       454 ~P~glavD~~~g~LY~tD~~~------~~I~v~d~dg-~~~~~l~~~~~~~P--~giavDp~~-------g~ly~td~~~  517 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVL------GTVSVADTKG-VKRKTLFREQGSKP--RAIVVDPVH-------GFMYWTDWGT  517 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTT------SCEEEEBSSS-CCEEEECCCSSCCC--CCEECCSSS-------SCCEECCCSS
T ss_pred             CcceEEEEeeCCcEEEEeccC------CeEEEEecCC-CceEEEEeCCCCCc--ceEEEccCC-------CcEEEcccCC
Confidence            455543322455666665543      5899999884 44444422 11111  223677752       2334443333


Q ss_pred             -CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEE-ECCCcEEEEecccccccccccc-
Q 047036          385 -NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVG-SLDGKIRLYSKTSMRQAKTAFP-  460 (634)
Q Consensus       385 -~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASG-S~DGtIRLWD~~t~r~akt~L~-  460 (634)
                       ++|.+.++.....  +.+..  .         ..   ..-..++++++ ++|+.+ +..+.|+.+|..+.. .+..+. 
T Consensus       518 ~~~I~~~~~dG~~~--~~l~~--~---------~l---~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~  580 (699)
T 1n7d_A          518 PAKIKKGGLNGVDI--YSLVT--E---------NI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED  580 (699)
T ss_dssp             SCCEEBCCSSSCCC--CEESC--S---------SC---SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCC
T ss_pred             CCeEEEEeCCCCCe--eEEEe--C---------CC---CCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEec
Confidence             6788877753221  11210  0         00   01135688876 466544 566789999986532 222222 


Q ss_pred             -CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036          461 -GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       461 -GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                       +......+|++..++ .+++ ...+.|..++..    +|+.+..+
T Consensus       581 ~~~~~~P~glavd~~~-lywtd~~~~~V~~~d~~----~G~~~~~i  621 (699)
T 1n7d_A          581 EKRLAHPFSLAVFEDK-VFWTDIINEAIFSANRL----TGSDVNLL  621 (699)
T ss_dssp             SSSCSSCCCCEEETTE-EEEECSTTTCEEEEETT----TEEEEECC
T ss_pred             CCcCCCceEeEEECCE-EEEEeCCCCeEEEEEcc----CCCceEEe
Confidence             112233567775552 3334 667889988853    45544444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=86.33  E-value=21  Score=37.88  Aligned_cols=150  Identities=13%  Similarity=0.216  Sum_probs=84.1

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCC---E-EEEEeC--CCeEE
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSE---S-TFLGLD--DNRLC  388 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~---~-laSGS~--D~tIk  388 (634)
                      ..++|+.....      +-|+++|+ +|++++.+.+ +-+.|     .+-|.-+..    ++   + ++|.-.  +++|+
T Consensus        39 ~~s~ii~t~k~------~gL~Vydl-~G~~l~~~~~g~~nnV-----D~r~~~~l~----g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           39 QNSKLITTNKK------SGLVVYSL-DGKMLHSYNTGKLNNV-----DIRYDFPLN----GKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             GGCEEEEEETT------TEEEEEET-TSCEEEEECCSCEEEE-----EEEEEEEET----TEEEEEEEEEECSTTCCEEE
T ss_pred             CccEEEEEcCC------CCEEEEcC-CCcEEEEccCCCcccE-----EEecccccC----CceEeEEEEeCCCCCCCeEE
Confidence            44555544322      57999999 7999999974 33332     444531111    22   2 233333  68999


Q ss_pred             EEEc--CCCCceEEecccCCCCccccccccccccCcce--EEEEECC-CC--eEEEEECCCcEEEEeccc---c---ccc
Q 047036          389 QWDM--RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF--QCFASTG-DG--SIVVGSLDGKIRLYSKTS---M---RQA  455 (634)
Q Consensus       389 lWD~--R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f--ssva~s~-dG--~IASGS~DGtIRLWD~~t---~---r~a  455 (634)
                      ++++  .++  .+..+..-..++     +...   ...  .|+..++ .|  ++++...+|.+..|++..   +   .+.
T Consensus       103 vf~iDp~~~--~l~~i~~~~~pv-----~t~~---~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l  172 (355)
T 3amr_A          103 IYAIDGKNG--TLQSMTDPDHPI-----ATAI---NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKK  172 (355)
T ss_dssp             EEEECTTTC--CEEECSCTTSCE-----ECCC---SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCC--ceeeccccccCc-----CCCC---CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceE
Confidence            9954  443  245542110011     0000   111  2333366 35  588888999999999832   1   023


Q ss_pred             cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ..+|+ .+..+-++.+.+...+|.. -.+.-|..+|+.
T Consensus       173 VR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          173 VRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             EEEec-CCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            34554 4568899999998878777 555555444543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.14  E-value=1.9  Score=48.84  Aligned_cols=131  Identities=16%  Similarity=0.169  Sum_probs=80.0

Q ss_pred             EEECCCC-e-EEEEECCCcEEEEecccccc-----------ccccccCCCCCeEEEEECCCCCEEEEE--cCCcEEEEEc
Q 047036          427 FASTGDG-S-IVVGSLDGKIRLYSKTSMRQ-----------AKTAFPGLGSPITHVDVTYDGKWILGT--TDTYLILICT  491 (634)
Q Consensus       427 va~s~dG-~-IASGS~DGtIRLWD~~t~r~-----------akt~L~GH~d~ItsVdfSpDGk~LlSS--~D~tIrLWD~  491 (634)
                      +-++||| + +++|-.+.++-++|......           ++..-+..+-.-.+.+|.++| ...+|  .|+.|.-|++
T Consensus       328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEH
T ss_pred             eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEec
Confidence            4568999 5 56677899999999874311           111112355567999999999 55554  5999999997


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCceeE--eecCCCcccc--------CC----Ccccccccccccc-cCCCCceEEEEEc
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPRLL--KLTPLDSHLA--------GT----DNKIHGGHFSWVT-ENGKQERHLVATV  556 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L--~L~Pe~~~~~--------g~----~i~Ft~a~Fs~~t-~~g~~E~~IvtSt  556 (634)
                      .      +.+..|.|--  ..|.-.+|  +-.|+|.+..        |+    -.+|++++|-++- .--.++++|=-|.
T Consensus       407 ~------~a~~~~~g~~--~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          407 E------EAVRAYKGEK--VNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             H------HHHHHHTTCC--CCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             c------HHHHHhcCcc--CCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            4      1223344321  11222222  2236665331        11    2579999998741 1123456776688


Q ss_pred             CCeEEEEeCh
Q 047036          557 GKFSVIWDFQ  566 (634)
Q Consensus       557 g~~viiWdl~  566 (634)
                      +++..|-|.-
T Consensus       479 dkM~lv~D~P  488 (638)
T 3sbq_A          479 DEMKLVHDGP  488 (638)
T ss_dssp             SSCEEEEEEE
T ss_pred             CceEEEecCC
Confidence            8998888873

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=85.62  E-value=46  Score=36.41  Aligned_cols=162  Identities=10%  Similarity=0.131  Sum_probs=96.4

Q ss_pred             cEEEeee-CCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          257 QSLTLGA-LDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      +.+.+.- +.+-|++.|+.|+.-...+.. .++  .+++.     ....|.....++.++++++|...+.       .+|
T Consensus        24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk--~L~~~-----~~i~f~~i~qlvlSpsG~lLAl~g~-------~~V   88 (452)
T 3pbp_A           24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDS-LYH--SLNFS-----RHLVLDDTFHVISSTSGDLLCLFND-------NEI   88 (452)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEEETTTCS-SCE--EEECT-----TTCCCCTTCEEEECTTSSEEEEECS-------SEE
T ss_pred             cEEEEEcCCCEEEEEECCEEEEEECCCCC-cce--EEecC-----cccccCceeEEEECCCCCEEEEecC-------CeE
Confidence            3444555 444677788888865544332 333  22222     1124534455778888888887765       579


Q ss_pred             EEEeCCCCc------------EEEEEecc------CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-
Q 047036          336 QQLDIETGK------------IVTEWKFE------KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-  396 (634)
Q Consensus       336 rlWDleTGK------------~V~~lkgH------~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-  396 (634)
                      .+..+..|.            .++.|.-.      ...  |.-+-|+|-+..     +..|++=-.|++||+||+.... 
T Consensus        89 ~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~--I~qVlWHPl~~~-----ds~LVVLtsD~~Ir~yDl~~s~~  161 (452)
T 3pbp_A           89 FVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSS--IKKVLFHPKSYR-----DSCIVVLKEDDTITMFDILNSQE  161 (452)
T ss_dssp             EEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCC--EEEEEECTTBGG-----GCEEEEEETTSCEEEEETTCTTS
T ss_pred             EEEEecCccccCcccccccccceeEEEcCCcccCCCCc--eeEEEeccccCC-----CCeEEEEecCCEEEEEEcccCCC
Confidence            999887442            23455533      222  445689997543     4688888999999999998532 


Q ss_pred             ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE--CCCcEEEE
Q 047036          397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS--LDGKIRLY  447 (634)
Q Consensus       397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS--~DGtIRLW  447 (634)
                      .+. .|..... ..    |-+ .....+.++||.++| .|.+.+  ..|.|.-.
T Consensus       162 ~P~-~L~k~~~-~f----g~d-~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          162 KPI-VLNKPNN-SF----GLD-ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCE-EESCCCS-EE----ESC-SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCc-chhcccc-cc----CCC-cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            232 3421100 00    100 122567899999988 566655  88998643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=84.11  E-value=83  Score=38.12  Aligned_cols=130  Identities=16%  Similarity=0.221  Sum_probs=78.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.||+.+...++.+.+|+...+. .|...+.+          +.+++.++ .+.|....+..+ .+ ..+.         
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~-~I~~As~n----------~~~vvva~-g~~l~~fel~~~-~L-~~~~---------  548 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAK-NISVASCN----------SSQVVVAV-GRALYYLQIHPQ-EL-RQIS---------  548 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCC-CCCEEEEC----------SSEEEEEE-TTEEEEEEEETT-EE-EEEE---------
T ss_pred             CEEEEEECCCCeEEEEEECCCCC-EEEEEEeC----------CCEEEEEE-CCEEEEEEeeCC-ce-eeec---------
Confidence            46999999888899999865542 13332333          24677775 677888776543 22 2211         


Q ss_pred             ccccccccCcceEEEEECCC-------CeEEEEEC-CCcEEEEeccccccc-cccccCCCCCeEEEEECC--CCCEEEE-
Q 047036          413 TQGHQFSRGTNFQCFASTGD-------GSIVVGSL-DGKIRLYSKTSMRQA-KTAFPGLGSPITHVDVTY--DGKWILG-  480 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~d-------G~IASGS~-DGtIRLWD~~t~r~a-kt~L~GH~d~ItsVdfSp--DGk~LlS-  480 (634)
                        .  ..-...++|+++.+-       .++|+|.. |++|||+.+.+.+.. ...|++ .....+|.+..  ..-||.. 
T Consensus       549 --~--~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~ig  623 (1158)
T 3ei3_A          549 --H--TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCA  623 (1158)
T ss_dssp             --E--EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEE
T ss_pred             --c--cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEE
Confidence              0  012335788888642       27999997 999999998765311 123432 23455655542  2346666 


Q ss_pred             EcCCcEEEEE
Q 047036          481 TTDTYLILIC  490 (634)
Q Consensus       481 S~D~tIrLWD  490 (634)
                      -.|+.+.-+.
T Consensus       624 l~dG~l~~~~  633 (1158)
T 3ei3_A          624 LGDGALFYFG  633 (1158)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCeEEEEE
Confidence            5577765554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=83.05  E-value=65  Score=36.09  Aligned_cols=133  Identities=11%  Similarity=0.047  Sum_probs=76.8

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|+.+++..+.....+.......  .-+++.+.+       +.+.++-...++|.+.|+.....  ..+..  .     
T Consensus        59 ~~I~r~~~~g~~~~~v~~~g~~~P--~GlAvD~~~-------~~LY~tD~~~~~I~v~~~dG~~~--~~l~~--~-----  120 (628)
T 4a0p_A           59 KTISRAFMNGSALEHVVEFGLDYP--EGMAVDWLG-------KNLYWADTGTNRIEVSKLDGQHR--QVLVW--K-----  120 (628)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSCC--CEEEEETTT-------TEEEEEETTTTEEEEEETTSTTC--EEEEC--S-----
T ss_pred             CeEEEEECCCCCcEEEEeCCCCCc--ceEEEEeCC-------CEEEEEECCCCEEEEEecCCCcE--EEEEe--C-----
Confidence            689999987543333232211111  123666541       34555666678899988865422  22210  0     


Q ss_pred             ccccccccCcceEEEEECC-CCeEEEEEC--CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcCCcEE
Q 047036          413 TQGHQFSRGTNFQCFASTG-DGSIVVGSL--DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLI  487 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~-dG~IASGS~--DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIr  487 (634)
                          .  . ..-..+++.| .|+|.....  .+.|...++.+. .....+.+ ....++|+|+++++.|. + +..+.|.
T Consensus       121 ----~--l-~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~~~~l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          121 ----D--L-DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-ERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             ----S--C-CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ----C--C-CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-ceEEEECC-CCCcceEEEccccCEEEEEECCCCEEE
Confidence                0  0 1125778876 677766542  567887877653 23333333 34568999999877665 5 6678888


Q ss_pred             EEEcc
Q 047036          488 LICTL  492 (634)
Q Consensus       488 LWD~~  492 (634)
                      ..|+.
T Consensus       192 ~~d~d  196 (628)
T 4a0p_A          192 SSNML  196 (628)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            88863

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=81.92  E-value=53  Score=34.25  Aligned_cols=173  Identities=11%  Similarity=-0.014  Sum_probs=93.2

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-C-
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-D-  383 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~-  383 (634)
                      .|.++.+....++++++....      +.|.+.|+..+.....+...-...  .-+++.|.        +..|+-.- . 
T Consensus       160 ~p~glavD~~~~~lY~~d~~~------~~I~~~~~~g~~~~~l~~~~~~~P--~~iavdp~--------~g~ly~td~~~  223 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFRENGSKP--RAIVVDPV--------HGFMYWTDWGT  223 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTT------TEEEEECTTTCSEEEEEECSSCCE--EEEEEETT--------TTEEEEEECSS
T ss_pred             CcccEEEEecCCceEEEECCC------CeEEEEeCCCCceEEEEeCCCCCc--ceEEEecc--------cCeEEEEeCCC
Confidence            566644433466677776654      589999998444333333222221  23477875        23444433 2 


Q ss_pred             CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEE-ECCCcEEEEeccccccccccccC
Q 047036          384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVG-SLDGKIRLYSKTSMRQAKTAFPG  461 (634)
Q Consensus       384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASG-S~DGtIRLWD~~t~r~akt~L~G  461 (634)
                      ...|.+.++.....  ..+.. ..          .   ..-..++++++ ++|..+ +..+.|+.+|..+.. ....+.+
T Consensus       224 ~~~I~~~~~dG~~~--~~~~~-~~----------l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~  286 (400)
T 3p5b_L          224 PAKIKKGGLNGVDI--YSLVT-EN----------I---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED  286 (400)
T ss_dssp             SCCEEEEETTSCSC--EEEEC-SS----------C---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEEC
T ss_pred             CCEEEEEeCCCCcc--EEEEE-CC----------C---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeC
Confidence            37888888864322  22210 00          0   11256788865 577665 456789999987632 2232222


Q ss_pred             --CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEee
Q 047036          462 --LGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKL  520 (634)
Q Consensus       462 --H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L  520 (634)
                        .-....+|++..+ ....+ ...+.|..+|..    +|+.+..+...+    +.|.-+.+
T Consensus       287 ~~~l~~P~gl~v~~~-~lywtd~~~~~V~~~~~~----~G~~~~~i~~~~----~~p~~i~v  339 (400)
T 3p5b_L          287 EKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL----TGSDVNLLAENL----LSPEDMVL  339 (400)
T ss_dssp             SSTTSSEEEEEEETT-EEEEEESSSCSEEEEESS----SCCCCEEEECSC----SCEEEEEE
T ss_pred             CCCCCCCEEEEEeCC-EEEEecCCCCeEEEEEcC----CCCceEEEecCC----CCCceEEE
Confidence              2233468888333 33344 667888888853    566555554322    34555544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=80.92  E-value=53  Score=35.20  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=21.3

Q ss_pred             CCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          461 GLGSPITHVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       461 GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                      ||.. ..+|+|.|+|+..++  +.+..-.|.-+.
T Consensus       226 G~RN-p~gla~dp~G~L~~~d~g~~~~dein~i~  258 (454)
T 1cru_A          226 GHRN-PQGLAFTPNGKLLQSEQGPNSDDEINLIV  258 (454)
T ss_dssp             CCSE-EEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred             CCCC-cceEEECCCCCEEEEecCCCCCeEEEEec
Confidence            5554 579999999987777  455555555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=80.15  E-value=11  Score=41.84  Aligned_cols=102  Identities=14%  Similarity=0.039  Sum_probs=59.3

Q ss_pred             CCEEEEEeCCC-----------eEEEEEcCCCCc-eEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEE-C
Q 047036          375 SESTFLGLDDN-----------RLCQWDMRDRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGS-L  440 (634)
Q Consensus       375 g~~laSGS~D~-----------tIklWD~R~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS-~  440 (634)
                      +.+++.|+.++           .+.+||+.+..- .+..+..              .+.....++++..+|+ +++|+ .
T Consensus       198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--------------~~~~~~~~~~~~~~g~lyv~GG~~  263 (656)
T 1k3i_A          198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--------------KHDMFCPGISMDGNGQIVVTGGND  263 (656)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--------------SCCCSSCEEEECTTSCEEEECSSS
T ss_pred             CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--------------CCCCccccccCCCCCCEEEeCCCC
Confidence            56788887543           689999987541 1111110              0111123456677884 56666 4


Q ss_pred             CCcEEEEecccccccc--ccccCCCCCeEEEEECCCCCEEEE-E-cC-----CcEEEEEcc
Q 047036          441 DGKIRLYSKTSMRQAK--TAFPGLGSPITHVDVTYDGKWILG-T-TD-----TYLILICTL  492 (634)
Q Consensus       441 DGtIRLWD~~t~r~ak--t~L~GH~d~ItsVdfSpDGk~LlS-S-~D-----~tIrLWD~~  492 (634)
                      ++++++||..+.+ -.  ..++... .=.++++.+||+.++. + .+     +.+.+||..
T Consensus       264 ~~~v~~yd~~t~~-W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          264 AKKTSLYDSSSDS-WIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             TTCEEEEEGGGTE-EEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CCceEEecCcCCc-eeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            5689999987632 11  1222111 1135667789999888 6 34     678889864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	634
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 16/131 (12%)

Query: 349 WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408
             +  + +  ++ + T         P      G  D  +  WD+                
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM------------ 238

Query: 409 VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 468
            L    GH             +G   I+  + D  +R++   + R  KT        +T 
Sbjct: 239 CLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTS 294

Query: 469 VDVTYDGKWIL 479
           +D      +++
Sbjct: 295 LDFHKTAPYVV 305

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK 456
              +         L          G     F+ +G   ++ G  D    ++      +A 
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAG 306

Query: 457 TAFPGLGSPITHVDVTYDGKWIL-GTTDTYLIL 488
               G  + ++ + VT DG  +  G+ D++L +
Sbjct: 307 V-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL 440
              D  +  WD+                 +      +   G       +TG+G I+  SL
Sbjct: 269 VGADATIRVWDVTTSK------------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 441 DGKIRLY 447
           DG +  Y
Sbjct: 317 DGTLNFY 323

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 9/144 (6%)

Query: 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL-GLDDNRLCQWDMR 393
           V+  D ETG +V     E +    +     +   S        + + G  D  +  W+++
Sbjct: 229 VRVWDSETGFLVERLDSENE----SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

Query: 394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMR 453
           + +    +              +   +        +  D  I+ GS D  +  + K S  
Sbjct: 285 NANNKSDSKTPNSGTCEVT---YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341

Query: 454 QAKTAFPGLGSPITHVDVTYDGKW 477
                  G  + +  V V      
Sbjct: 342 PLLM-LQGHRNSVISVAVANGSSL 364

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	634
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.83
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.81
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.8
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.72
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.68
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.59
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.53
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.48
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.48
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.48
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.47
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.45
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.33
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.31
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.28
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.22
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.13
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.02
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.94
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.41
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.75
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.51
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.37
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.14
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.71
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.56
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.46
d1evha_	111	Enabled {Mouse (Mus musculus) [TaxId: 10090]}	92.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.42
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.92
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.04
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	88.13
d1mkea1	114	Actin regulatory protein WASP {Rat (Rattus norvegi	88.11
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.45
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.74

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=2.1e-25  Score=224.08  Aligned_cols=241  Identities=11%  Similarity=0.037  Sum_probs=174.9

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ..+.++.+ +|+.+++.|   .+|.||.........   ...+..|.       .|...+.++.++++|++++.+.    
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~---~~~~~~~~-------~~v~~v~~s~d~~~l~~~~~~~----  124 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL---KTTIPVFS-------GPVKDISWDSESKRIAAVGEGR----  124 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE---EEEEECSS-------SCEEEEEECTTSCEEEEEECCS----
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeecccccc---cccccccc-------Cccccccccccccccccccccc----
Confidence            45888888 889888875   589999876544221   22344442       2344455556667777766542    


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      +..+++||+++++.+.++.+|.+.|  ..++|+|+++       ..+++|+.|++|++||+++.. .+..+.+|..    
T Consensus       125 ~~~~~v~~~~~~~~~~~l~~h~~~v--~~v~~~~~~~-------~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~----  190 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNLTGQARAM--NSVDFKPSRP-------FRIISGSDDNTVAIFEGPPFK-FKSTFGEHTK----  190 (311)
T ss_dssp             SCSEEEEETTTCCBCBCCCCCSSCE--EEEEECSSSS-------CEEEEEETTSCEEEEETTTBE-EEEEECCCSS----
T ss_pred             ccccccccccccccccccccccccc--ccccccccce-------eeecccccccccccccccccc-cccccccccc----
Confidence            3689999999999999999999976  4569999832       368999999999999999754 3455544433    


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc------ccccccCCCCCeEEEEECCCCCEEEE-EcC
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ------AKTAFPGLGSPITHVDVTYDGKWILG-TTD  483 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D  483 (634)
                                 .+.+++++|+| +||+|+.||.|+|||..+++.      ....+.||..+|++|+|||||++|++ +.|
T Consensus       191 -----------~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D  259 (311)
T d1nr0a1         191 -----------FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD  259 (311)
T ss_dssp             -----------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred             -----------cccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCC
Confidence                       46889999998 799999999999999876431      11234589999999999999999999 889


Q ss_pred             CcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEE
Q 047036          484 TYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIW  563 (634)
Q Consensus       484 ~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiW  563 (634)
                      ++|+|||+.    +|+++..+..|..-.                 ...+.|.   |+     +  ...++++.++.|.+|
T Consensus       260 g~v~iwd~~----t~~~~~~l~~~~~~~-----------------~~~~~~~---~~-----~--~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         260 KTIKIWNVA----TLKVEKTIPVGTRIE-----------------DQQLGII---WT-----K--QALVSISANGFINFV  308 (311)
T ss_dssp             SEEEEEETT----TTEEEEEEECCSSGG-----------------GCEEEEE---EC-----S--SCEEEEETTCCEEEE
T ss_pred             CeEEEEECC----CCcEEEEEECCCCcc-----------------ceEEEEE---ec-----C--CEEEEEECCCEEEEE
Confidence            999999986    677777776554200                 0011221   21     1  246666889999999


Q ss_pred             eCh
Q 047036          564 DFQ  566 (634)
Q Consensus       564 dl~  566 (634)
                      |.+
T Consensus       309 d~d  311 (311)
T d1nr0a1         309 NPE  311 (311)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.4e-24  Score=205.55  Aligned_cols=205  Identities=12%  Similarity=0.139  Sum_probs=149.4

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .+.+..+.+.+++++.|      +++++||+.+|+.+..+.+|...+  ..++|+|+        +.++++|+.|++|++
T Consensus       106 ~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~l~~~~~d~~v~~  169 (317)
T d1vyhc1         106 SVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHREWV--RMVRPNQD--------GTLIASCSNDQTVRV  169 (317)
T ss_dssp             EEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCSSCE--EEEEECTT--------SSEEEEEETTSCEEE
T ss_pred             eeeccCCCceEEeeccC------cceeEeecccceeeeEEccCCCcc--eeeecccC--------CCEEEEEeCCCeEEE
Confidence            45556677778877765      799999999999999999999875  56699998        679999999999999


Q ss_pred             EEcCCCCceEEecccCCCCcccc--cccccc---c-cCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCC
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHW--TQGHQF---S-RGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~--~~g~~y---~-~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~  463 (634)
                      ||++.+.. +..+.+|...+...  .....+   . ...........+...+++|+.||.|++||..+++ ....+.+|.
T Consensus       170 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~  247 (317)
T d1vyhc1         170 WVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHD  247 (317)
T ss_dssp             EETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCS
T ss_pred             Eeecccee-eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc-EEEEEeCCC
Confidence            99998654 56666665543211  100000   0 0111112222333479999999999999998874 778899999


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV  542 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~  542 (634)
                      .+|++|+|+|+|++|++ +.|++|+|||+.    +++.+..|.+|.+..                  ..+.|+|.     
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~h~~~V------------------~~~~~s~~-----  300 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFV------------------TSLDFHKT-----  300 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCT----TSCCCEEEECCSSCE------------------EEEEECSS-----
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECC----CCcEEEEEcCCCCCE------------------EEEEEcCC-----
Confidence            99999999999999999 899999999985    678888888876411                  12444443     


Q ss_pred             ccCCCCceEEEEEcCCeEEEEe
Q 047036          543 TENGKQERHLVATVGKFSVIWD  564 (634)
Q Consensus       543 t~~g~~E~~IvtStg~~viiWd  564 (634)
                         +  ...++++.|+.|.|||
T Consensus       301 ---~--~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         301 ---A--PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ---S--SCEEEEETTSEEEEEC
T ss_pred             ---C--CEEEEEeCCCeEEEeC
Confidence               2  2455557899999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.3e-24  Score=218.10  Aligned_cols=240  Identities=15%  Similarity=0.151  Sum_probs=162.8

Q ss_pred             CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036          306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD  383 (634)
Q Consensus       306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~  383 (634)
                      .|...+.+++++++|++++.|      ++|++||+++++  ++..|++|.+.|  ..++|+|+        +++|++|+.
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH~~~V--~~l~fsp~--------~~~l~s~s~   71 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQV--TGVDWAPD--------SNRIVTCGT   71 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCE--EEEEEETT--------TTEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCCCCCE--EEEEECCC--------CCEEEEEEC
Confidence            455555555666677777664      689999999886  678899999986  46699998        679999999


Q ss_pred             CCeEEEEEcCCCCc-eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc---cccc
Q 047036          384 DNRLCQWDMRDRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ---AKTA  458 (634)
Q Consensus       384 D~tIklWD~R~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~---akt~  458 (634)
                      |++|++||++.+.. .+..+.+|.               ..+.+++++|+| +||+|+.|++|++|+....+.   ....
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~~~~---------------~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVILRIN---------------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECCCCS---------------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEeeccccccccccccccc---------------ccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence            99999999986532 223333332               346899999999 799999999999999765421   2345


Q ss_pred             ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC-CCCCCCceeEeecCCCccccCCCccccc
Q 047036          459 FPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM-GNKIPAPRLLKLTPLDSHLAGTDNKIHG  536 (634)
Q Consensus       459 L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~-~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~  536 (634)
                      +.+|...|++|+|+|||++||+ +.|++|+|||+........    ..... ....+...++.....|.      .....
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~v~~  206 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER----PAPTPWGSKMPFGELMFESSSSC------GWVHG  206 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC----CCCBTTBSCCCTTCEEEECCCCS------SCEEE
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCccccc----cccccccccccceeeeeeccCcc------CcEEE
Confidence            6689999999999999999999 8999999999764221111    11010 11111112222111221      11223


Q ss_pred             ccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036          537 GHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF  607 (634)
Q Consensus       537 a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f  607 (634)
                      ..|++.   |  ...++++.|+.|.+||+..   +..             -+.++.+...|..+.|..|+-
T Consensus       207 ~~~s~~---g--~~l~s~~~d~~i~iwd~~~---~~~-------------~~~~~~~~~~v~s~~fs~d~~  256 (371)
T d1k8kc_         207 VCFSAN---G--SRVAWVSHDSTVCLADADK---KMA-------------VATLASETLPLLAVTFITESS  256 (371)
T ss_dssp             EEECSS---S--SEEEEEETTTEEEEEEGGG---TTE-------------EEEEECSSCCEEEEEEEETTE
T ss_pred             EEeecc---c--ccccccccCCcceEEeeec---ccc-------------eeeeecccccceeeeecCCCC
Confidence            345431   3  3445557899999999874   221             256777888888888855543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.6e-23  Score=200.99  Aligned_cols=240  Identities=12%  Similarity=0.070  Sum_probs=164.8

Q ss_pred             EecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCC
Q 047036          293 RFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQ  371 (634)
Q Consensus       293 ~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q  371 (634)
                      .|.||. ++.+.+|+|+        +++|++++.|      ++|++||+.+|+.+.++.+|...|  ..++|+|+     
T Consensus        50 tL~GH~~~I~~l~~s~~--------~~~l~sgs~D------g~v~iWd~~~~~~~~~~~~~~~~v--~~v~~~~~-----  108 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTD--------SRLLVSASQD------GKLIIWDSYTTNKVHAIPLRSSWV--MTCAYAPS-----  108 (340)
T ss_dssp             EECCCSSCEEEEEECTT--------SSEEEEEETT------TEEEEEETTTTEEEEEEECSCSCE--EEEEECTT-----
T ss_pred             EECCCCCCEEEEEECCC--------CCEEEEEECC------CceeeeecccceeEEEEecccccE--EeeEeecc-----
Confidence            345552 2244555555        4567777765      799999999999999999999986  46699998     


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCC---ceEEecccCCCCccccc--cc------------------------cccccCc
Q 047036          372 LDPSESTFLGLDDNRLCQWDMRDRS---GIVQNMVKGDSPVLHWT--QG------------------------HQFSRGT  422 (634)
Q Consensus       372 ~~~g~~laSGS~D~tIklWD~R~~~---~~Vq~l~gh~s~V~~~~--~g------------------------~~y~~~~  422 (634)
                         +..+++|+.|++|++|+.....   .....+.+|........  ..                        .......
T Consensus       109 ---~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         109 ---GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             ---SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ---ceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccce
Confidence               6799999999999999977542   12334444432211000  00                        0001233


Q ss_pred             ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCe
Q 047036          423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKT  500 (634)
Q Consensus       423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~  500 (634)
                      .+.+..+.+.+ .+++|+.|+.|++||+.+++ ....+.+|..+|++|+|+|+|++|++ +.|++|++||+.    .+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~----~~~~  260 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR----ADQE  260 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TTEE
T ss_pred             eEeeeccccccceeEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec----cccc
Confidence            45666777776 78999999999999998864 77889999999999999999999999 899999999975    3333


Q ss_pred             eeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccccccccccc
Q 047036          501 KTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQ  580 (634)
Q Consensus       501 ~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~  580 (634)
                      +..+.....                     ....+...|++.   |  ...++++.++.|.+||+..   ++.       
T Consensus       261 ~~~~~~~~~---------------------~~~i~~~~~s~~---~--~~l~~g~~dg~i~iwd~~~---~~~-------  304 (340)
T d1tbga_         261 LMTYSHDNI---------------------ICGITSVSFSKS---G--RLLLAGYDDFNCNVWDALK---ADR-------  304 (340)
T ss_dssp             EEEECCTTC---------------------CSCEEEEEECSS---S--CEEEEEETTSCEEEEETTT---CCE-------
T ss_pred             ccccccccc---------------------cCceEEEEECCC---C--CEEEEEECCCEEEEEECCC---CcE-------
Confidence            333321111                     011122334321   2  2344457799999999863   332       


Q ss_pred             CCcceeeEEEeccCCCeeeeccc
Q 047036          581 GLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       581 ~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                            .+.++.|...|.++.|-
T Consensus       305 ------~~~~~~H~~~V~~l~~s  321 (340)
T d1tbga_         305 ------AGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             ------EEEECCCSSCEEEEEEC
T ss_pred             ------EEEEcCCCCCEEEEEEe
Confidence                  25788899999998883

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=3.6e-23  Score=207.72  Aligned_cols=240  Identities=12%  Similarity=0.084  Sum_probs=166.3

Q ss_pred             CcEEEeee-CCCeEEE--ecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLV--SDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv--~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      +...++++ +++..++  .|..|.+|......     ....|.+|.       .+...+-+++++++|++++.|      
T Consensus        18 ~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~-----~~~~~~~H~-------~~v~~~~~sp~g~~latg~~d------   79 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT-----DTEIYTEHS-------HQTTVAKTSPSGYYCASGDVH------   79 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSS-----CCEEECCCS-------SCEEEEEECTTSSEEEEEETT------
T ss_pred             CCeEEEEEcCCCCEEEEEeCCEEEEEECCCCc-----eeEEEcCCC-------CCEEEEEEeCCCCeEeccccC------
Confidence            34455565 6665444  46778888765433     122345552       223334444555677777775      


Q ss_pred             CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC--CCeEEEEEcCCCCceEEecccCCCC
Q 047036          333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD--DNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~--D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                      ++|++||+.+++.  ..++.+|...|  ..++|+|+        +..+++++.  ++.+++||..++.. ++++.+|.. 
T Consensus        80 g~i~iwd~~~~~~~~~~~~~~~~~~v--~~v~~s~d--------~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~-  147 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIPVFSGPV--KDISWDSE--------SKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQAR-  147 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSSSCE--EEEEECTT--------SCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSS-
T ss_pred             ceEeeeeeeccccccccccccccCcc--cccccccc--------ccccccccccccccccccccccccc-ccccccccc-
Confidence            7999999998864  36689999876  45699998        578888886  56799999988653 456655543 


Q ss_pred             ccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY  485 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t  485 (634)
                                    .+.+++++|+|  .||+|+.||+|++||+.+++ ....+.+|..+|++|.++|||++|++ +.|++
T Consensus       148 --------------~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         148 --------------AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             --------------CEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             --------------ccccccccccceeeecccccccccccccccccc-cccccccccccccccccCcccccccccccccc
Confidence                          36789999988  48999999999999998864 77888899999999999999999999 88999


Q ss_pred             EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEe
Q 047036          486 LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWD  564 (634)
Q Consensus       486 IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWd  564 (634)
                      |+|||..    .+..+..|......          .+.|.      -..+...|++.   |   ++|++ +.|+.|+|||
T Consensus       213 v~~~d~~----~~~~~~~~~~~~~~----------~~~h~------~~V~~~~~s~~---~---~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         213 IVLYNGV----DGTKTGVFEDDSLK----------NVAHS------GSVFGLTWSPD---G---TKIASASADKTIKIWN  266 (311)
T ss_dssp             EEEEETT----TCCEEEECBCTTSS----------SCSSS------SCEEEEEECTT---S---SEEEEEETTSEEEEEE
T ss_pred             ccccccc----cccccccccccccc----------ccccc------ccccccccCCC---C---CEEEEEeCCCeEEEEE
Confidence            9999976    45555444422110          01111      11122344431   3   45555 6799999999


Q ss_pred             Ch
Q 047036          565 FQ  566 (634)
Q Consensus       565 l~  566 (634)
                      +.
T Consensus       267 ~~  268 (311)
T d1nr0a1         267 VA  268 (311)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9.4e-24  Score=204.14  Aligned_cols=145  Identities=12%  Similarity=0.166  Sum_probs=121.3

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      ....+++++..|      ++|++||+.+++++.++.+|...|  ..++|+|+        +..+++|+.|++|++||++.
T Consensus       194 ~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~~h~~~i--~~v~~~p~--------~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         194 PDTRLFVSGACD------ASAKLWDVREGMCRQTFTGHESDI--NAICFFPN--------GNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             TTSSEEEEEETT------TEEEEEETTTTEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTT
T ss_pred             cccceeEEeecC------ceEEEEECCCCcEEEEEeCCCCCe--EEEEECCC--------CCEEEEEeCCCeEEEEeecc
Confidence            344555555554      799999999999999999999976  45699998        67999999999999999997


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp  473 (634)
                      ... +..+...             .....+.+++++++| +||+|+.||+|+|||+.+++ ....|++|..+|++|+|+|
T Consensus       258 ~~~-~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~H~~~V~~l~~s~  322 (340)
T d1tbga_         258 DQE-LMTYSHD-------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             TEE-EEEECCT-------------TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECT
T ss_pred             ccc-ccccccc-------------cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEeC
Confidence            643 3333210             123457889999998 79999999999999998874 7788999999999999999


Q ss_pred             CCCEEEE-EcCCcEEEEE
Q 047036          474 DGKWILG-TTDTYLILIC  490 (634)
Q Consensus       474 DGk~LlS-S~D~tIrLWD  490 (634)
                      ||++||+ +.|++|+|||
T Consensus       323 d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEccCCEEEEeC
Confidence            9999999 8999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.2e-22  Score=200.74  Aligned_cols=288  Identities=15%  Similarity=0.147  Sum_probs=179.9

Q ss_pred             CcEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCC-----------cccccCcceeeEEeCCcceEE
Q 047036          256 VQSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSK-----------IGSNSTPKKALLMRGETNMML  321 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~-----------~g~~fsP~~~mL~~~D~~mll  321 (634)
                      ..+.++++ +|+++++.|  .+|.||....+.+     ...+..+...           ....-.+...+.+++++++|+
T Consensus        63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL-----VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCE-----EEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCeEEEEEecccce-----EeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            34666777 888888876  5899998765431     2222221000           000111233455666777888


Q ss_pred             ecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe
Q 047036          322 MSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN  401 (634)
Q Consensus       322 sss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~  401 (634)
                      +++.|      ++|++||+.+++.+..+.+|...|  ..++++++        +..+++|+.++.|++||.+.... +..
T Consensus       138 s~~~d------g~v~i~~~~~~~~~~~~~~h~~~v--~~~~~~~~--------~~~~~~~~~~~~i~~~d~~~~~~-~~~  200 (388)
T d1erja_         138 TGAED------RLIRIWDIENRKIVMILQGHEQDI--YSLDYFPS--------GDKLVSGSGDRTVRIWDLRTGQC-SLT  200 (388)
T ss_dssp             EEETT------SCEEEEETTTTEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSEEEEEETTTTEE-EEE
T ss_pred             ecccc------cccccccccccccccccccccccc--cccccccc--------cccccccccceeeeeeecccccc-ccc
Confidence            88775      799999999999999999999976  45688887        67999999999999999987543 232


Q ss_pred             cccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccc------cccccCCCCCeEEEEECCC
Q 047036          402 MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQA------KTAFPGLGSPITHVDVTYD  474 (634)
Q Consensus       402 l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~a------kt~L~GH~d~ItsVdfSpD  474 (634)
                      ...+               .....++..++++ +||+|+.||.|++||..++...      ...+.+|..+|++|+|+|+
T Consensus       201 ~~~~---------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         201 LSIE---------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EECS---------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             cccc---------------cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            2211               1123344445577 7999999999999998765311      1234589999999999999


Q ss_pred             CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEE
Q 047036          475 GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLV  553 (634)
Q Consensus       475 Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Iv  553 (634)
                      |++|++ +.|++|++||+..    +.....+....     ....+.....|..      .-+...|++.   |   .+|+
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~------~v~~~~~s~~---~---~~l~  324 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQN----ANNKSDSKTPN-----SGTCEVTYIGHKD------FVLSVATTQN---D---EYIL  324 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC------------------------CEEEEEECCSS------CEEEEEECGG---G---CEEE
T ss_pred             CCEEEEEECCCcEEEEeccC----Ccccccccccc-----ccceeeecccccc------eEEEEEECCC---C---CEEE
Confidence            999999 8999999999862    32221111111     0112222222211      1122334431   2   3554


Q ss_pred             -EEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEE
Q 047036          554 -ATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVA  620 (634)
Q Consensus       554 -tStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA  620 (634)
                       ++.|+.|++||++.   ++.             -+.++.|...|..+.+. ....|+  ++.++|++
T Consensus       325 sg~~dg~i~vwd~~~---~~~-------------~~~l~~H~~~V~~~~~~-~~~~~s--pd~~~l~s  373 (388)
T d1erja_         325 SGSKDRGVLFWDKKS---GNP-------------LLMLQGHRNSVISVAVA-NGSSLG--PEYNVFAT  373 (388)
T ss_dssp             EEETTSEEEEEETTT---CCE-------------EEEEECCSSCEEEEEEC-SSCTTC--TTCEEEEE
T ss_pred             EEeCCCEEEEEECCC---CcE-------------EEEEeCCCCCEEEEEEe-cCcccC--CCCCEEEE
Confidence             57799999999873   332             25788899999988763 222233  34555554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2e-22  Score=201.03  Aligned_cols=249  Identities=16%  Similarity=0.227  Sum_probs=170.1

Q ss_pred             CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ....++++ +|+.+++.|   ..|.+|......     ....+.+|.       .+...+.+..+...++.++.+     
T Consensus       122 ~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-----~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~-----  184 (388)
T d1erja_         122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----IVMILQGHE-------QDIYSLDYFPSGDKLVSGSGD-----  184 (388)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCS-------SCEEEEEECTTSSEEEEEETT-----
T ss_pred             CCEEEEEECCCCCcceecccccccccccccccc-----ccccccccc-------ccccccccccccccccccccc-----
Confidence            34677787 788887765   468888765432     223344441       233444555666667776664     


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                       +.|++||+.++..+.....|...+  .+ .+.|..       +.++++|+.|++|++||++++.. +..+......   
T Consensus       185 -~~i~~~d~~~~~~~~~~~~~~~~~--~~-~~~~~~-------~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~---  249 (388)
T d1erja_         185 -RTVRIWDLRTGQCSLTLSIEDGVT--TV-AVSPGD-------GKYIAAGSLDRAVRVWDSETGFL-VERLDSENES---  249 (388)
T ss_dssp             -SEEEEEETTTTEEEEEEECSSCEE--EE-EECSTT-------CCEEEEEETTSCEEEEETTTCCE-EEEEC--------
T ss_pred             -eeeeeeeccccccccccccccccc--cc-cccCCC-------CCeEEEEcCCCeEEEeecccCcc-ceeecccccc---
Confidence             689999999999999888887643  34 555531       67999999999999999998653 3443211100   


Q ss_pred             cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc-----------ccccccCCCCCeEEEEECCCCCEEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ-----------AKTAFPGLGSPITHVDVTYDGKWIL  479 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~-----------akt~L~GH~d~ItsVdfSpDGk~Ll  479 (634)
                       ..+    +...+.+++++++| +||+|+.||.|++||+.+.+.           .......|...|++|+|+|+|++|+
T Consensus       250 -~~~----h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         250 -GTG----HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             --CC----CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred             -ccC----CCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEE
Confidence             011    23457899999998 799999999999999875421           1223457899999999999999999


Q ss_pred             E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcC
Q 047036          480 G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVG  557 (634)
Q Consensus       480 S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg  557 (634)
                      + +.|++|+|||+.    +|+++..|.+|.+..    ..+...        ....|+|.        +   ..|++ |.|
T Consensus       325 sg~~dg~i~vwd~~----~~~~~~~l~~H~~~V----~~~~~~--------~~~~~spd--------~---~~l~s~s~D  377 (388)
T d1erja_         325 SGSKDRGVLFWDKK----SGNPLLMLQGHRNSV----ISVAVA--------NGSSLGPE--------Y---NVFATGSGD  377 (388)
T ss_dssp             EEETTSEEEEEETT----TCCEEEEEECCSSCE----EEEEEC--------SSCTTCTT--------C---EEEEEEETT
T ss_pred             EEeCCCEEEEEECC----CCcEEEEEeCCCCCE----EEEEEe--------cCcccCCC--------C---CEEEEEeCC
Confidence            9 899999999986    789999999987521    122211        11233332        3   56665 679


Q ss_pred             CeEEEEeChhh
Q 047036          558 KFSVIWDFQQV  568 (634)
Q Consensus       558 ~~viiWdl~~v  568 (634)
                      +.|.||+++++
T Consensus       378 g~I~iW~~~k~  388 (388)
T d1erja_         378 CKARIWKYKKI  388 (388)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CEEEEEeeeeC
Confidence            99999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-22  Score=199.51  Aligned_cols=257  Identities=12%  Similarity=0.146  Sum_probs=176.0

Q ss_pred             CCcEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          255 GVQSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       255 ~~~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      ...+.+|++ +|+.|++.|  ..|.||.....+...........+|.       .+...+.+++++++|++++.|     
T Consensus        51 ~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~-------~~I~~v~~s~dg~~l~s~~~d-----  118 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRD-------NYIRSCKLLPDGCTLIVGGEA-----  118 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTT-------SBEEEEEECTTSSEEEEEESS-----
T ss_pred             CCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCC-------CcEEEEEEcCCCCEEEEeecc-----
Confidence            345788888 899999986  47889987554321111122222331       223334444556677777765     


Q ss_pred             CCcEEEEeCC--CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          332 APGVQQLDIE--TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       332 ~~TIrlWDle--TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                       ++|++||+.  +++++.++.+|...|  ..++|+|+        +..+++|+.|++|++||++++.. .....+|.   
T Consensus       119 -g~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~---  183 (337)
T d1gxra_         119 -STLSIWDLAAPTPRIKAELTSSAPAC--YALAISPD--------SKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHT---  183 (337)
T ss_dssp             -SEEEEEECCCC--EEEEEEECSSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTTTEE-EEEECCCS---
T ss_pred             -cccccccccccccccccccccccccc--cccccccc--------ccccccccccccccccccccccc-cccccccc---
Confidence             799999986  567788899999875  46689998        67999999999999999997643 34444333   


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI  487 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr  487 (634)
                                  ..+.++++++++ .|++|+.||.|++||+.+++ ....+ .|..+|++|+|+|+|++|++ +.|+.|+
T Consensus       184 ------------~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         184 ------------DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             ------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ------------cccccccccccccccccccccccccccccccce-eeccc-ccccceEEEEEcccccccceeccccccc
Confidence                        346789999998 89999999999999998764 44444 58899999999999999999 8999999


Q ss_pred             EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      +||+.    .++.. ...+|.+.                  ...+.|+|.        |  ...++++.|+.|.+||+..
T Consensus       250 i~d~~----~~~~~-~~~~~~~~------------------i~~v~~s~~--------g--~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         250 VLHVN----KPDKY-QLHLHESC------------------VLSLKFAYC--------G--KWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEETT----SSCEE-EECCCSSC------------------EEEEEECTT--------S--SEEEEEETTSEEEEEETTT
T ss_pred             ccccc----ccccc-cccccccc------------------cceEEECCC--------C--CEEEEEeCCCeEEEEECCC
Confidence            99975    23322 22223210                  012344433        3  2344457899999999863


Q ss_pred             hhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036          568 VKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF  602 (634)
Q Consensus       568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f  602 (634)
                         ++.              .....+...|..+.|
T Consensus       297 ---~~~--------------~~~~~~~~~v~~~~~  314 (337)
T d1gxra_         297 ---GAS--------------IFQSKESSSVLSCDI  314 (337)
T ss_dssp             ---CCE--------------EEEEECSSCEEEEEE
T ss_pred             ---CCE--------------EEEccCCCCEEEEEE
Confidence               321              122346778887777

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-22  Score=199.59  Aligned_cols=230  Identities=16%  Similarity=0.207  Sum_probs=165.6

Q ss_pred             cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA  332 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~  332 (634)
                      ...++.+ +|+.+++.|   ..|.+|........   ....+.+|.       .+...+.++.++.++++++.+      
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d------  162 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR---IKAELTSSA-------PACYALAISPDSKVCFSCCSD------  162 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--E---EEEEEECSS-------SCEEEEEECTTSSEEEEEETT------
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccc---ccccccccc-------ccccccccccccccccccccc------
Confidence            4677777 788777754   47888885433211   122333431       122233345556667776664      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      ++|++||+.++++...+.+|...|  ..++|+|+        +..+++|+.|++|++||+++++. ++.+.         
T Consensus       163 ~~i~~~~~~~~~~~~~~~~~~~~v--~~l~~s~~--------~~~~~~~~~d~~v~i~d~~~~~~-~~~~~---------  222 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQGHTDGA--SCIDISND--------GTKLWTGGLDNTVRSWDLREGRQ-LQQHD---------  222 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCE--EEEEECTT--------SSEEEEEETTSEEEEEETTTTEE-EEEEE---------
T ss_pred             cccccccccccccccccccccccc--cccccccc--------cccccccccccccccccccccee-ecccc---------
Confidence            689999999999999999999976  45699998        67999999999999999998653 34432         


Q ss_pred             ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC  490 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD  490 (634)
                             ....+.+++++|++ +||+|+.||.|++||+.+.  ......+|..+|++|+|+|||++|++ +.|++|+|||
T Consensus       223 -------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd  293 (337)
T d1gxra_         223 -------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             -------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -------cccceEEEEEcccccccceecccccccccccccc--ccccccccccccceEEECCCCCEEEEEeCCCeEEEEE
Confidence                   23357889999998 7999999999999998774  33456789999999999999999999 8999999999


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeC
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDF  565 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl  565 (634)
                      +.    .|+.+..+. |.+   +             .  ..+.|+|.        |   ++|++ +.|+.|.|||+
T Consensus       294 ~~----~~~~~~~~~-~~~---~-------------v--~~~~~s~d--------~---~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         294 TP----YGASIFQSK-ESS---S-------------V--LSCDISVD--------D---KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TT----TCCEEEEEE-CSS---C-------------E--EEEEECTT--------S---CEEEEEETTSCEEEEEE
T ss_pred             CC----CCCEEEEcc-CCC---C-------------E--EEEEEeCC--------C---CEEEEEeCCCeEEEEEE
Confidence            75    566554433 211   0             0  12334433        3   45655 67899999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.4e-22  Score=205.95  Aligned_cols=234  Identities=8%  Similarity=-0.009  Sum_probs=165.4

Q ss_pred             EEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          259 LTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       259 LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      -++++ +|+++++.|   ..|.||....+...   .+..|.+|.       .|...+.+++++++|++++.|      ++
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~---~~~~l~gH~-------~~V~~l~fsp~~~~l~s~s~D------~~   74 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---QVHELKEHN-------GQVTGVDWAPDSNRIVTCGTD------RN   74 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEE---EEEEEECCS-------SCEEEEEEETTTTEEEEEETT------SC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEE---EEEEecCCC-------CCEEEEEECCCCCEEEEEECC------Ce
Confidence            34566 788877654   46888986543211   344566763       234445555666778888765      79


Q ss_pred             EEEEeCCCCcEE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE---EecccCCCCc
Q 047036          335 VQQLDIETGKIV--TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV---QNMVKGDSPV  409 (634)
Q Consensus       335 IrlWDleTGK~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V---q~l~gh~s~V  409 (634)
                      |++||+.++...  ..+.+|...|  ..++|+|+        ++.+++|+.|++|++|++.......   ....+     
T Consensus        75 i~vWd~~~~~~~~~~~~~~~~~~v--~~i~~~p~--------~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~-----  139 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTLVILRINRAA--RCVRWAPN--------EKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-----  139 (371)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCE--EEEEECTT--------SSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-----
T ss_pred             EEEEeecccccccccccccccccc--cccccccc--------cccceeecccCcceeeeeecccccccccccccc-----
Confidence            999999987654  4457888876  46699998        6799999999999999987654321   11111     


Q ss_pred             cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-----------------cccccccCCCCCeEEEEE
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-----------------QAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-----------------~akt~L~GH~d~ItsVdf  471 (634)
                                ....+.|++++|+| +||+||.||+|||||.....                 .....+.+|...|.+|+|
T Consensus       140 ----------~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  209 (371)
T d1k8kc_         140 ----------IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  209 (371)
T ss_dssp             ----------CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             ----------cccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence                      23457899999999 79999999999999975421                 122345689999999999


Q ss_pred             CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036          472 TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER  550 (634)
Q Consensus       472 SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~  550 (634)
                      +|||++|++ +.|++|+|||+.    .++.+..+.+|..   |               ...+.|+|.        |   +
T Consensus       210 s~~g~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~---~---------------v~s~~fs~d--------~---~  256 (371)
T d1k8kc_         210 SANGSRVAWVSHDSTVCLADAD----KKMAVATLASETL---P---------------LLAVTFITE--------S---S  256 (371)
T ss_dssp             CSSSSEEEEEETTTEEEEEEGG----GTTEEEEEECSSC---C---------------EEEEEEEET--------T---E
T ss_pred             ecccccccccccCCcceEEeee----cccceeeeecccc---c---------------ceeeeecCC--------C---C
Confidence            999999999 899999999986    5677777776653   1               012444433        3   5


Q ss_pred             EEEEEcCCeEEEEeCh
Q 047036          551 HLVATVGKFSVIWDFQ  566 (634)
Q Consensus       551 ~IvtStg~~viiWdl~  566 (634)
                      .|+++.|+.+++|.+.
T Consensus       257 ~la~g~d~~~~~~~~~  272 (371)
T d1k8kc_         257 LVAAGHDCFPVLFTYD  272 (371)
T ss_dssp             EEEEETTSSCEEEEEE
T ss_pred             EEEEEcCCceEEEEee
Confidence            7777778777776654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.7e-22  Score=186.48  Aligned_cols=233  Identities=16%  Similarity=0.155  Sum_probs=168.7

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      .+.+++++++|++++.|      ++|++||+++|+++++|++|...|  ..++|+|+        +..++++..++++.+
T Consensus        22 ~l~~sp~~~~l~s~s~D------g~i~iWd~~~~~~~~~~~~h~~~V--~~~~~~~~--------~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASED------ATIKVWDYETGDFERTLKGHTDSV--QDISFDHS--------GKLLASCSADMTIKL   85 (317)
T ss_dssp             EEEECSSSSEEEEEESS------SCEEEEETTTCCCCEEECCCSSCE--EEEEECTT--------SSEEEEEETTSCCCE
T ss_pred             EEEEcCCCCEEEEEeCC------CeEEEEECCCCCEEEEEeCCCCcE--EEEeeecc--------ccccccccccccccc
Confidence            33344455677777765      799999999999999999999986  45699998        679999999999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH  468 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its  468 (634)
                      |+...... ...+.+|.               ..+.++++++++ .|++++.|+.+++||+.+++ ....+.+|...+.+
T Consensus        86 ~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~  148 (317)
T d1vyhc1          86 WDFQGFEC-IRTMHGHD---------------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRM  148 (317)
T ss_dssp             EETTSSCE-EECCCCCS---------------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEE
T ss_pred             cccccccc-cccccccc---------------ccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccCCCccee
Confidence            99987543 33333332               345778889888 89999999999999998864 66788999999999


Q ss_pred             EEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCC
Q 047036          469 VDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGK  547 (634)
Q Consensus       469 VdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~  547 (634)
                      ++|+|+|++|++ +.|++|++|++.    .++.+..+.+|..    ....+...|...................    ..
T Consensus       149 ~~~~~~~~~l~~~~~d~~v~~~~~~----~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  216 (317)
T d1vyhc1         149 VRPNQDGTLIASCSNDQTVRVWVVA----TKECKAELREHRH----VVECISWAPESSYSSISEATGSETKKSG----KP  216 (317)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSS----CEEEEEECCSCGGGGGGGCCSCC-----------
T ss_pred             eecccCCCEEEEEeCCCeEEEEeec----cceeeEEEecCCC----CceEEEEeeccccceeeccccceeeeec----cC
Confidence            999999999999 999999999986    5777777877653    2355666666543211111111111110    11


Q ss_pred             CceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          548 QERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       548 ~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                      ....++++.|+.|.+||+..   ++.             -+.+..+...|..+.|.
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~---~~~-------------~~~~~~~~~~v~~~~~~  256 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVST---GMC-------------LMTLVGHDNWVRGVLFH  256 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTT---TEE-------------EEEEECCSSCEEEEEEC
T ss_pred             CceeEeccCCCEEEEEECCC---CcE-------------EEEEeCCCCCEEEEEEC
Confidence            13345557899999999873   322             14566777788777773

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.3e-22  Score=199.47  Aligned_cols=214  Identities=11%  Similarity=-0.003  Sum_probs=155.8

Q ss_pred             cEEEeee-C--CCeEEEec---CeeeEEEccCCceecce---eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036          257 QSLTLGA-L--DNSFLVSD---LGLQVYRNYNRGIHNKG---VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD  327 (634)
Q Consensus       257 ~~LavG~-~--D~sfvv~G---~~igV~k~~~~gl~~~~---~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~  327 (634)
                      .+.+|++ |  ++.|++.|   .+|.||...........   ....+..       ...|...+.++.++++|++.+.+.
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~s~~~~~l~~~~~~~  137 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV-------LAGPISDISWDFEGRRLCVVGEGR  137 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEEC-------CSSCEEEEEECTTSSEEEEEECCS
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccc-------ccCcEEEEEECCCCCccceeeccc
Confidence            3677777 4  55788765   48888876443211100   0111222       234566667777777777665432


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036          328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS  407 (634)
Q Consensus       328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s  407 (634)
                          ++.+++|+..+|+++.++.+|...|  ..++|+|++       ...+++|+.|++|++||++..+. ...+..+. 
T Consensus       138 ----~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~-------~~~~~~~~~d~~v~~~d~~~~~~-~~~~~~~~-  202 (325)
T d1pgua1         138 ----DNFGVFISWDSGNSLGEVSGHSQRI--NACHLKQSR-------PMRSMTVGDDGSVVFYQGPPFKF-SASDRTHH-  202 (325)
T ss_dssp             ----SCSEEEEETTTCCEEEECCSCSSCE--EEEEECSSS-------SCEEEEEETTTEEEEEETTTBEE-EEEECSSS-
T ss_pred             ----cceEEEEeecccccceeeeeccccc--ccccccccc-------cceEEEeeccccccccccccccc-ceeccccc-
Confidence                3789999999999999999999976  456999983       24688999999999999986532 23332111 


Q ss_pred             CccccccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC---CCCCEEEE-E
Q 047036          408 PVLHWTQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT---YDGKWILG-T  481 (634)
Q Consensus       408 ~V~~~~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS---pDGk~LlS-S  481 (634)
                                 .....+.|++++|+ + +||+|+.||.|+|||..+++ ....|.+|..+|.++.|+   |||++||+ +
T Consensus       203 -----------~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s  270 (325)
T d1pgua1         203 -----------KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVG  270 (325)
T ss_dssp             -----------CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEE
T ss_pred             -----------CCCCccEEeeeccccceeccccccccceeeeeecccc-ccccccccccccccceeeeeccCCCEEEEEe
Confidence                       12334789999996 4 69999999999999998874 778899999999888887   89999999 9


Q ss_pred             cCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          482 TDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       482 ~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                      .|++|+|||+.    +|+++..|..|.
T Consensus       271 ~D~~i~iwd~~----~~~~~~~~~~~~  293 (325)
T d1pgua1         271 ADATIRVWDVT----TSKCVQKWTLDK  293 (325)
T ss_dssp             TTSEEEEEETT----TTEEEEEEECCT
T ss_pred             CCCeEEEEECC----CCCEEEEEEecC
Confidence            99999999986    678887777665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3e-22  Score=205.08  Aligned_cols=163  Identities=10%  Similarity=0.023  Sum_probs=118.9

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCc------------------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGK------------------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST  378 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK------------------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l  378 (634)
                      .+++++++.|      ++|++||+....                  .+.....|...+  ..++|+|+         .+|
T Consensus       136 ~~~~~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~s~d---------g~l  198 (393)
T d1sq9a_         136 SHRLVATDVK------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA--TSVDISER---------GLI  198 (393)
T ss_dssp             CEEEEEEETT------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC--CEEEECTT---------SEE
T ss_pred             ccEEEEEcCC------CcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcE--EEEEECCC---------CEE
Confidence            3456666554      799999974321                  111122333333  35699997         389


Q ss_pred             EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCc---EEEEecccccc
Q 047036          379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGK---IRLYSKTSMRQ  454 (634)
Q Consensus       379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGt---IRLWD~~t~r~  454 (634)
                      |+|+.|++|++||+++++. +..+......     .+    +...+.|++|+|+| +||+||.|++   |||||+.+++ 
T Consensus       199 asgs~Dg~i~iwd~~~~~~-~~~~~~~~~l-----~~----h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-  267 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRP-LYNFESQHSM-----IN----NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-  267 (393)
T ss_dssp             EEECTTSEEEEEETTTTEE-EEEEECCC--------C----CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-
T ss_pred             EEEeCCCcEEEEeeccccc-cccccccccc-----cc----ccceEEEcccccccceeeeecCCCCcceeeecccccce-
Confidence            9999999999999998653 3333211100     01    23457899999999 8999999985   9999998753 


Q ss_pred             cccc-------------ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCC
Q 047036          455 AKTA-------------FPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNK  511 (634)
Q Consensus       455 akt~-------------L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~  511 (634)
                      .+..             +.||..+|++|+|||||++||| +.|++|+|||+.    +|+++..|+||....
T Consensus       268 ~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~----~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK----TKERITTLNMHCDDI  334 (393)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TTEEEEEEECCGGGC
T ss_pred             eeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC----CCCEEEEECCcCCcc
Confidence            3333             3489999999999999999999 999999999986    799999999998643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=4.1e-21  Score=185.88  Aligned_cols=166  Identities=17%  Similarity=0.165  Sum_probs=117.6

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      .+.+++++++|++++.|      ++|++||+++|++++.+ .+|...|  ..++|+|+        + .+++++.|++|+
T Consensus        17 ~l~~s~dg~~l~s~s~D------g~v~vWd~~~~~~~~~~~~~h~~~v--~~v~~~~~--------g-~~~~~~~d~~v~   79 (299)
T d1nr0a2          17 ALSSSADGKTLFSADAE------GHINSWDISTGISNRVFPDVHATMI--TGIKTTSK--------G-DLFTVSWDDHLK   79 (299)
T ss_dssp             EEEECTTSSEEEEEETT------SCEEEEETTTCCEEECSSCSCSSCE--EEEEECTT--------S-CEEEEETTTEEE
T ss_pred             EEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcCCCCCcE--EEEEeecc--------c-eeecccceeeEE
Confidence            33344445667777765      79999999999999998 4788876  46699997        3 477788899999


Q ss_pred             EEEcCCCCc--eEEecccCCC--------------------Ccccccccc--ccccCcceEEEEECCCC-eEEEEECCCc
Q 047036          389 QWDMRDRSG--IVQNMVKGDS--------------------PVLHWTQGH--QFSRGTNFQCFASTGDG-SIVVGSLDGK  443 (634)
Q Consensus       389 lWD~R~~~~--~Vq~l~gh~s--------------------~V~~~~~g~--~y~~~~~fssva~s~dG-~IASGS~DGt  443 (634)
                      +|+......  .......|..                    .+..|...+  ........++++++|++ +||+|+.||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999764210  0000001111                    111111111  11134467889999998 7999999999


Q ss_pred             EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          444 IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       444 IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      |++||+.+.+.......+|..+|++|+|+|+|++|++ +.|++|++||+.
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999987653222345579999999999999999999 899999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=5.3e-20  Score=178.00  Aligned_cols=191  Identities=11%  Similarity=0.084  Sum_probs=131.4

Q ss_pred             cEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP  333 (634)
Q Consensus       257 ~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~  333 (634)
                      ...++.+ +++.+++.|  .++.+|......+........        +. ..+...+.+..++.+++.+..       +
T Consensus        57 ~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~s~~g~~~~~~~~-------~  120 (299)
T d1nr0a2          57 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN--------KL-SSQPLGLAVSADGDIAVAACY-------K  120 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE--------EC-SSCEEEEEECTTSSCEEEEES-------S
T ss_pred             cEEEEEeeccceeecccceeeEEEeccCCccccccccccc--------cc-ccccccccccccccccccccc-------c
Confidence            3566777 777776654  578888754433211111110        01 111223334455566666554       4


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036          334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT  413 (634)
Q Consensus       334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~  413 (634)
                      ++++|+..  +.......|.    +..++|+|+        +..+++|+.|+.|++||++.+.........|        
T Consensus       121 ~i~~~~~~--~~~~~~~~~~----~~~~~~s~~--------~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~--------  178 (299)
T d1nr0a2         121 HIAIYSHG--KLTEVPISYN----SSCVALSND--------KQFVAVGGQDSKVHVYKLSGASVSEVKTIVH--------  178 (299)
T ss_dssp             EEEEEETT--EEEEEECSSC----EEEEEECTT--------SCEEEEEETTSEEEEEEEETTEEEEEEEEEC--------
T ss_pred             cccccccc--cccccccccc----ccccccccc--------ccccccccccccccccccccccccccccccc--------
Confidence            79999954  5555555554    356799998        6799999999999999998754211111122        


Q ss_pred             cccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc--ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036          414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ--AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI  489 (634)
Q Consensus       414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~--akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW  489 (634)
                             ...+.+++++|++ +||+|+.||.|++||+.+.+.  ....+.+|..+|++|+|+|+|++|++ +.|++|+||
T Consensus       179 -------~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         179 -------PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             -------SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEE
Confidence                   2346899999998 799999999999999876432  22457789999999999999999999 899999999


Q ss_pred             Ecc
Q 047036          490 CTL  492 (634)
Q Consensus       490 D~~  492 (634)
                      |+.
T Consensus       252 d~~  254 (299)
T d1nr0a2         252 NMN  254 (299)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.1e-20  Score=171.84  Aligned_cols=241  Identities=11%  Similarity=0.150  Sum_probs=156.2

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      ..|+++|++++.|      ++|++||+++|+++++|++|.+.|    .+++++        +.+|+||+.|++|++|+++
T Consensus        22 ~~d~~~l~sgs~D------g~i~vWd~~~~~~~~~l~~H~~~V----~~v~~~--------~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          22 QYDDQKIVSGLRD------NTIKIWDKNTLECKRILTGHTGSV----LCLQYD--------ERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             ECCSSEEEEEESS------SCEEEEESSSCCEEEEECCCSSCE----EEEECC--------SSEEEEEETTSCEEEEESS
T ss_pred             EEcCCEEEEEeCC------CeEEEEECCCCcEEEEEecCCCCE----eeeecc--------cceeecccccccccccccc
Confidence            4467788888876      799999999999999999999975    355666        5799999999999999998


Q ss_pred             CCCceEEecccCCC-------------------Ccccccc--cc-------ccccCcceEEEEECCCCeEEEEECCCcEE
Q 047036          394 DRSGIVQNMVKGDS-------------------PVLHWTQ--GH-------QFSRGTNFQCFASTGDGSIVVGSLDGKIR  445 (634)
Q Consensus       394 ~~~~~Vq~l~gh~s-------------------~V~~~~~--g~-------~y~~~~~fssva~s~dG~IASGS~DGtIR  445 (634)
                      .+.... ....+..                   .+..|..  ..       ...+...+.++.+. ...+++++.|++|+
T Consensus        84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~d~~i~  161 (293)
T d1p22a2          84 TGEMLN-TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIK  161 (293)
T ss_dssp             SCCEEE-EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEE
T ss_pred             cccccc-cccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec-ccccccccCCCcee
Confidence            764321 1111000                   0000110  00       00012223333332 23688999999999


Q ss_pred             EEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036          446 LYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD  524 (634)
Q Consensus       446 LWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~  524 (634)
                      +||..+++ ....+.+|..+|..+.++  +.+|++ +.|++|+|||+.    .++.+..+.+|..               
T Consensus       162 ~~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~---------------  219 (293)
T d1p22a2         162 VWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEE---------------  219 (293)
T ss_dssp             EEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT----TCCEEEEECCCSS---------------
T ss_pred             eecCCCCc-EEEEEcccccccccccCC--CCeEEEecCCCEEEEEecc----cceeeeeecccce---------------
Confidence            99998764 667888999999888775  568888 899999999975    4555555544432               


Q ss_pred             ccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036          525 SHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH  604 (634)
Q Consensus       525 ~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~  604 (634)
                            .+.    .+++ .  +  ...++++.|+.|.+||+.....-...      .. ......+..|...|.++.| +
T Consensus       220 ------~v~----~~~~-~--~--~~l~sg~~dg~i~iwd~~~~~~~~~~------~~-~~~~~~~~~H~~~V~~v~~-d  276 (293)
T d1p22a2         220 ------LVR----CIRF-D--N--KRIVSGAYDGKIKVWDLVAALDPRAP------AG-TLCLRTLVEHSGRVFRLQF-D  276 (293)
T ss_dssp             ------CEE----EEEC-C--S--SEEEEEETTSCEEEEEHHHHTSTTSC------TT-TTEEEEECCCSSCCCCEEE-C
T ss_pred             ------eee----eccc-c--c--eEEEEEcCCCEEEEEECCCCcccccc------CC-ceeeEEecCCCCCEEEEEE-c
Confidence                  011    1111 0  1  23455578999999998754332111      01 1123567889999999888 6


Q ss_pred             CccccCCCCCCCEEE
Q 047036          605 DKFAVTDSPEAPLVV  619 (634)
Q Consensus       605 d~f~~~~~~~~~iiv  619 (634)
                      +++.++++.|..|.|
T Consensus       277 ~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         277 EFQIVSSSHDDTILI  291 (293)
T ss_dssp             SSCEEECCSSSEEEE
T ss_pred             CCEEEEEecCCEEEE
Confidence            666555555665543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4e-20  Score=185.01  Aligned_cols=209  Identities=11%  Similarity=0.083  Sum_probs=148.0

Q ss_pred             EEEecCCC--CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEE--------EEEeccCCCcceeE
Q 047036          291 SVRFDGGS--SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIV--------TEWKFEKDGTDITM  360 (634)
Q Consensus       291 ~~~~~~~~--~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V--------~~lkgH~~~V~I~v  360 (634)
                      ...+.+|.  .+..++|+|..      ++.+|++++.|      ++|++||+..++.+        ..+..|...|  ..
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~------~g~~lasgs~D------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v--~~  120 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIK------GSQYLCSGDES------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI--SD  120 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSST------TCCEEEEEETT------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE--EE
T ss_pred             eEEEeCCCCCCEEEEEEeeCC------CCCEEEEEeCC------CCEEEeeecCCcceeeeecccccccccccCcE--EE
Confidence            44566652  34666777642      34566666654      79999999766533        3456777765  45


Q ss_pred             EEEecCCCCCCCCCCCEEEEEe--CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEE
Q 047036          361 RDITNDTKSSQLDPSESTFLGL--DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIV  436 (634)
Q Consensus       361 vsfsPd~K~~q~~~g~~laSGS--~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IA  436 (634)
                      ++|+|+        +..+++++  .++.+++|+..++. .+..+.+|..+               +.++++++++  .++
T Consensus       121 v~~s~~--------~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~---------------v~~~~~~~~~~~~~~  176 (325)
T d1pgua1         121 ISWDFE--------GRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQR---------------INACHLKQSRPMRSM  176 (325)
T ss_dssp             EEECTT--------SSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSC---------------EEEEEECSSSSCEEE
T ss_pred             EEECCC--------CCccceeeccccceEEEEeecccc-cceeeeecccc---------------cccccccccccceEE
Confidence            699998        56777665  47889999998765 45777666543               5788999887  478


Q ss_pred             EEECCCcEEEEeccccccc--cccccCCCCCeEEEEECCC-CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCC
Q 047036          437 VGSLDGKIRLYSKTSMRQA--KTAFPGLGSPITHVDVTYD-GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKI  512 (634)
Q Consensus       437 SGS~DGtIRLWD~~t~r~a--kt~L~GH~d~ItsVdfSpD-Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~  512 (634)
                      +|+.||.|++||....+..  ...+.+|..+|++|+|+|| |++|++ +.|++|+|||++    .++.+..|.+|.... 
T Consensus       177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~----~~~~~~~l~~~~~~v-  251 (325)
T d1pgua1         177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPV-  251 (325)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCC-
T ss_pred             EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec----ccccccccccccccc-
Confidence            8999999999998765321  2345688999999999997 688888 899999999986    688888888775311 


Q ss_pred             CCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036          513 PAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ  566 (634)
Q Consensus       513 p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~  566 (634)
                                       ..+.|..+ |.    .|  ...++++.|+.|.|||++
T Consensus       252 -----------------~~~~~s~~-~~----dg--~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         252 -----------------QGGIFALS-WL----DS--QKFATVGADATIRVWDVT  281 (325)
T ss_dssp             -----------------CSCEEEEE-ES----SS--SEEEEEETTSEEEEEETT
T ss_pred             -----------------ccceeeee-cc----CC--CEEEEEeCCCeEEEEECC
Confidence                             12344433 11    12  345555889999999987

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.1e-21  Score=194.73  Aligned_cols=233  Identities=11%  Similarity=0.085  Sum_probs=137.4

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec----------cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF----------EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg----------H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      ++++++.|      ++|++|++..+.....+..          |...  +..+++.++....   .+..+++++.|++|+
T Consensus        81 ~~~s~~~d------g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~dg~i~  149 (393)
T d1sq9a_          81 LVATTSFS------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHS--FWALKWGASNDRL---LSHRLVATDVKGTTY  149 (393)
T ss_dssp             EEEEEETT------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSC--EEEEEEECCC-------CEEEEEEETTSCEE
T ss_pred             EEEEEeCC------CcEEEEEccCCCceeeeeccccceeeeccCCCc--eEEEEEecCCCcc---cccEEEEEcCCCcEE
Confidence            44455554      7899999765543222211          2222  2345777653221   146899999999999


Q ss_pred             EEEcCCCCceEEecccCCCCccccc--cccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccc-----ccccccC
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWT--QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQ-----AKTAFPG  461 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~--~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~-----akt~L~G  461 (634)
                      +||+.........+..+........  ..........+.|++++|+|+||+||.||+|||||+.+++.     ....+.+
T Consensus       150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~  229 (393)
T d1sq9a_         150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN  229 (393)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccccccc
Confidence            9998643211111111110000000  00011122336789999999999999999999999887542     2345678


Q ss_pred             CCCCeEEEEECCCCCEEEE-EcCCc---EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036          462 LGSPITHVDVTYDGKWILG-TTDTY---LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG  537 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~LlS-S~D~t---IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a  537 (634)
                      |..+|++|+|||||++|++ +.|++   |+|||+.    .|+++..+.......    +......+|... ...+.|+|.
T Consensus       230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~----~g~~~~~l~~~~~~~----~~~~~~~gH~~~-V~~l~fspd  300 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE----FGERIGSLSVPTHSS----QASLGEFAHSSW-VMSLSFNDS  300 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT----TCCEEEEECBC------------CCBSBSSC-EEEEEECSS
T ss_pred             ccceEEEcccccccceeeeecCCCCcceeeecccc----cceeeeeeccccccc----cceeeeecccCc-eeeeccCCC
Confidence            9999999999999999999 88875   8999986    677777776443211    111111223211 112444443


Q ss_pred             cccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCee
Q 047036          538 HFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIV  598 (634)
Q Consensus       538 ~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~  598 (634)
                              |   ++|++ |.|+.|++||++.   |+.             -+.++.|.+.|.
T Consensus       301 --------~---~~l~S~s~D~~v~vWd~~~---g~~-------------~~~l~gH~~~v~  335 (393)
T d1sq9a_         301 --------G---ETLCSAGWDGKLRFWDVKT---KER-------------ITTLNMHCDDIE  335 (393)
T ss_dssp             --------S---SEEEEEETTSEEEEEETTT---TEE-------------EEEEECCGGGCS
T ss_pred             --------C---CeeEEECCCCEEEEEECCC---CCE-------------EEEECCcCCccc
Confidence                    3   45555 7799999999873   432             256777777665

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.8e-19  Score=173.40  Aligned_cols=280  Identities=16%  Similarity=0.210  Sum_probs=172.2

Q ss_pred             CCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC
Q 047036          265 DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI  340 (634)
Q Consensus       265 D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl  340 (634)
                      |+.+++.|   .+|.||......     .+..|.+|. ++.+.+|+|.         ++|++++.|      ++|++|++
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~l~~s~~---------~~l~s~s~D------~~i~iw~~   81 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHG---------GILVSGSTD------RTVRVWDI   81 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTE-----EEEEEECCSSCEEEEEEETT---------TEEEEEETT------CCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc-----EEEEEECCCCCEEEEEEcCC---------CEEEEEecc------cccccccc
Confidence            45566655   478889865432     344566763 2244444433         356667665      79999999


Q ss_pred             CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc-cCCCCccccccccc--
Q 047036          341 ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV-KGDSPVLHWTQGHQ--  417 (634)
Q Consensus       341 eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~-gh~s~V~~~~~g~~--  417 (634)
                      ..++++.....+..........+.|+        +..+++|+.|++|++||++..... .... .+............  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKN--------IKYIVTGSRDNTLHVWKLPKESSV-PDHGEEHDYPLVFHTPEENPY  152 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETT--------EEEEEEEETTSEEEEEECCC------------CCCEEESCTTTCTT
T ss_pred             cccccccccccccccccccccccccc--------cceeeeecCCCcEEEEEccCCcee-ccccccceeccceeccccccc
Confidence            99999988877665543334456666        568999999999999999875432 1111 01111000000000  


Q ss_pred             cc---cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          418 FS---RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       418 y~---~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      ..   ........+..++| .+++|+.|+.|++||..+++ ....+.++...+.++.|+|++.++++ +.|++|+|||+.
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeeeeeeccccccccccccceeeeecccceeeeeeccccc-ceeeeeccccccccccccccceeeecccccceEEeeecc
Confidence            00   00011122344555 79999999999999998864 66778889999999999999999999 999999999986


Q ss_pred             cccCCCCeeeeecCCCCCCCCCceeEeecCCCccccC--------------CCcccc------cccccccccCCCCceEE
Q 047036          493 FSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAG--------------TDNKIH------GGHFSWVTENGKQERHL  552 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g--------------~~i~Ft------~a~Fs~~t~~g~~E~~I  552 (634)
                          ++..+..+.+|.+..    ..+.+.|......+              ..+.+.      -..|++      +...|
T Consensus       232 ----~~~~~~~~~~h~~~v----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~l  297 (355)
T d1nexb2         232 ----NGELMYTLQGHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV------SDNIL  297 (355)
T ss_dssp             ----TCCEEEEECCCSSCC----CEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEE------CSSEE
T ss_pred             ----ccccccccccccccc----cccccccceeeeeecccccccccccccceecccccCCceEEEEEcC------CCCEE
Confidence                688888898887522    22333322110000              000111      112321      13678


Q ss_pred             EEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036          553 VATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM  603 (634)
Q Consensus       553 vtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~  603 (634)
                      +++.|+.|.+||++.   |++-            .-.+..+.+.|.++.|-
T Consensus       298 ~~g~d~~i~vwd~~t---g~~~------------~~~~~~~~~~V~~v~~~  333 (355)
T d1nexb2         298 VSGSENQFNIYNLRS---GKLV------------HANILKDADQIWSVNFK  333 (355)
T ss_dssp             EEEETTEEEEEETTT---CCBC------------CSCTTTTCSEEEEEEEE
T ss_pred             EEEeCCEEEEEECCC---CCEE------------EEEecCCCCCEEEEEEc
Confidence            888899999999873   3321            00245567788888873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=5.2e-19  Score=170.08  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=110.7

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      ++++|++++.|      ++|++||+.+|+++++|++|.+.|  ..++|+|+         ..|++|+.|++|++|+....
T Consensus        22 ~~~~l~tgs~D------g~i~vWd~~~~~~~~~l~~H~~~V--~~l~~s~~---------~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          22 EDNYVITGADD------KMIRVYDSINKKFLLQLSGHDGGV--WALKYAHG---------GILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             ETTEEEEEETT------TEEEEEETTTTEEEEEEECCSSCE--EEEEEETT---------TEEEEEETTCCEEEEETTTT
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEECCCCCE--EEEEEcCC---------CEEEEEeccccccccccccc
Confidence            45678888775      799999999999999999999986  45699985         58999999999999999876


Q ss_pred             CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc-----------------
Q 047036          396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT-----------------  457 (634)
Q Consensus       396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt-----------------  457 (634)
                      .+. .....+.             ........++++++ +|++|+.||+|++||+.+......                 
T Consensus        85 ~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d1nexb2          85 CCT-HVFEGHN-------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  150 (355)
T ss_dssp             EEE-EEECCCS-------------SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTC
T ss_pred             ccc-ccccccc-------------ccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccc
Confidence            432 2221111             11223445667777 799999999999999875321110                 


Q ss_pred             -----cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036          458 -----AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM  508 (634)
Q Consensus       458 -----~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~  508 (634)
                           ....|...|  ..+.++|+++++ +.|+.|++||+.    .++.+..+.++.
T Consensus       151 ~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~----~~~~~~~~~~~~  201 (355)
T d1nexb2         151 PYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHT  201 (355)
T ss_dssp             TTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETT----TTEEEEEECCCS
T ss_pred             cceeeeeeeccccc--cccccccceeeeecccceeeeeecc----cccceeeeeccc
Confidence                 011233333  356778999998 889999999985    566666565543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3e-18  Score=164.93  Aligned_cols=145  Identities=12%  Similarity=0.105  Sum_probs=111.1

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD  394 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~  394 (634)
                      +.++++.++.++     ++|++|++...+....+.. |...|  ..++|+|+        +..|++|+.|+.|++||++.
T Consensus       129 ~~~~~~v~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~--------~~~l~~g~~dg~i~i~d~~~  193 (287)
T d1pgua2         129 SQNYVAVGLEEG-----NTIQVFKLSDLEVSFDLKTPLRAKP--SYISISPS--------ETYIAAGDVMGKILLYDLQS  193 (287)
T ss_dssp             CSSEEEEEETTT-----SCEEEEETTEEEEEEECSSCCSSCE--EEEEECTT--------SSEEEEEETTSCEEEEETTT
T ss_pred             cCcceeeecccc-----ceeeeeeccccceeeeeeeccCCce--eEEEeccC--------ccccccccccccccceeecc
Confidence            345566665543     6899999988877777665 55544  56799998        67999999999999999987


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECC----------CC-eEEEEECCCcEEEEeccccccccccccCCC
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG----------DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~----------dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~  463 (634)
                      +..+...+.+|..+               +.+++++|          ++ +||+||.||+|||||+.........+.+|.
T Consensus       194 ~~~~~~~~~~h~~~---------------v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~  258 (287)
T d1pgua2         194 REVKTSRWAFRTSK---------------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK  258 (287)
T ss_dssp             TEEEECCSCCCSSC---------------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred             cccccccccccccc---------------cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC
Confidence            65432334455443               45555554          34 799999999999999866434556788999


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      .+|++|+|+|+++ |+| +.|++|+||++
T Consensus       259 ~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         259 DGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             TCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            9999999999986 566 99999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.6e-19  Score=167.28  Aligned_cols=146  Identities=13%  Similarity=0.213  Sum_probs=112.5

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM  392 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~  392 (634)
                      ...++.+|++++.|      ++|++||+.++++++.+.+|...|    .+++++        ++++++|+.|++|++||+
T Consensus       183 ~~~~~~~l~s~~~d------g~i~~~d~~~~~~~~~~~~~~~~v----~~~~~~--------~~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         183 LQFDGIHVVSGSLD------TSIRVWDVETGNCIHTLTGHQSLT----SGMELK--------DNILVSGNADSTVKIWDI  244 (342)
T ss_dssp             EEECSSEEEEEETT------SCEEEEETTTCCEEEEECCCCSCE----EEEEEE--------TTEEEEEETTSCEEEEET
T ss_pred             ccCCCCEEEEEeCC------CeEEEeecccceeeeEecccccce----eEEecC--------CCEEEEEcCCCEEEEEec
Confidence            34456778888775      799999999999999999999864    345554        469999999999999999


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc-----cCCCCCeE
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF-----PGLGSPIT  467 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L-----~GH~d~It  467 (634)
                      +.... ...+.++..            +...+.++++++ .+||+||.||+|||||+.+++ ....|     .+|..+|+
T Consensus       245 ~~~~~-~~~~~~~~~------------~~~~~~~~~~~~-~~~~s~s~Dg~i~iwd~~tg~-~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         245 KTGQC-LQTLQGPNK------------HQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             TTCCE-EEEECSTTS------------CSSCEEEEEECS-SEEEEEETTSEEEEEETTTCC-EEEEEEECTTGGGTCEEE
T ss_pred             ccccc-cccccccce------------eeeceeecccCC-CeeEEEcCCCEEEEEECCCCC-EEEEEecccCCCCCCCEE
Confidence            87653 345543321            123355666643 389999999999999998874 44333     47899999


Q ss_pred             EEEECCCCCEEEE-EcCCc----EEEEEc
Q 047036          468 HVDVTYDGKWILG-TTDTY----LILICT  491 (634)
Q Consensus       468 sVdfSpDGk~LlS-S~D~t----IrLWD~  491 (634)
                      +|+|+|||.+|++ +.|++    |++||.
T Consensus       310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            9999999999998 77775    999995

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-18  Score=164.66  Aligned_cols=196  Identities=13%  Similarity=0.213  Sum_probs=131.4

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR  395 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~  395 (634)
                      ++++|++++.|      ++|++||+.+|++++++.+|...|  ..++|+|+          .+++|+.|+++++|+....
T Consensus        26 ~g~~l~sgs~D------g~i~vWd~~~~~~~~~~~~h~~~V--~~v~~~~~----------~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2          26 CGNRIVSGSDD------NTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDN----------IIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             ETTEEEEEETT------SCEEEEETTTCCEEEECCCCSSCE--EEEEEETT----------EEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCCEEEEEeCCCCCE--EEEEeCCC----------ccccceecccccccccccc
Confidence            45678888775      799999999999999999999986  45588763          8999999999999998864


Q ss_pred             CceEEecccCCCC-------------------ccccc--cccc---cccCcceEEEEECCCCeEEEEECCCcEEEEeccc
Q 047036          396 SGIVQNMVKGDSP-------------------VLHWT--QGHQ---FSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTS  451 (634)
Q Consensus       396 ~~~Vq~l~gh~s~-------------------V~~~~--~g~~---y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t  451 (634)
                      ... .....+...                   +..|.  .++.   +................+++|+.|+.|++||...
T Consensus        88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          88 ECI-HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             EEE-EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             cce-ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence            321 111111111                   10010  0000   0011111222333445799999999999999887


Q ss_pred             cccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCC
Q 047036          452 MRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGT  530 (634)
Q Consensus       452 ~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~  530 (634)
                      . .....+.+|...+..+  +++|.+|++ +.|++|+|||+.    .++++..+.+|....                   
T Consensus       167 ~-~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~----~~~~~~~~~~~~~~v-------------------  220 (342)
T d2ovrb2         167 E-TCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLT-------------------  220 (342)
T ss_dssp             T-EEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCE-------------------
T ss_pred             c-eeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecc----cceeeeEecccccce-------------------
Confidence            5 4677888888766654  557899999 999999999986    567776666664210                   


Q ss_pred             CcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          531 DNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       531 ~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                       ..+.   |+     +  ...++++.|+.|++||+..
T Consensus       221 -~~~~---~~-----~--~~l~s~s~d~~i~iwd~~~  246 (342)
T d2ovrb2         221 -SGME---LK-----D--NILVSGNADSTVKIWDIKT  246 (342)
T ss_dssp             -EEEE---EE-----T--TEEEEEETTSCEEEEETTT
T ss_pred             -eEEe---cC-----C--CEEEEEcCCCEEEEEeccc
Confidence             1111   12     1  2445557899999999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.8e-18  Score=165.14  Aligned_cols=185  Identities=12%  Similarity=0.128  Sum_probs=131.2

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-CeEEEEEc
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-NRLCQWDM  392 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~tIklWD~  392 (634)
                      ..+..+++.+..       +.+.+|+..+++++..+..+..     +.+++|+        ++.+++|+.| +.|++|++
T Consensus        89 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          89 NNDGFTAVLTND-------DDLLILQSFTGDIIKSVRLNSP-----GSAVSLS--------QNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             CSSSEEEEEETT-------SEEEEEETTTCCEEEEEECSSC-----EEEEEEC--------SSEEEEEETTTSCEEEEET
T ss_pred             ccCCceEEEeec-------ccceeeeccceeeeeeccccce-----eeeeecc--------Ccceeeeccccceeeeeec
Confidence            344445555543       4699999999999999987653     3478887        4567776665 68999998


Q ss_pred             CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036          393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV  471 (634)
Q Consensus       393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf  471 (634)
                      +.... ...+.              ......+++++++|+| +||+|+.||.|+|||..+++.....+.+|..+|++|+|
T Consensus       149 ~~~~~-~~~~~--------------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~  213 (287)
T d1pgua2         149 SDLEV-SFDLK--------------TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW  213 (287)
T ss_dssp             TEEEE-EEECS--------------SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred             cccce-eeeee--------------eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeee
Confidence            75332 22221              0123357899999999 89999999999999998764334567899999999999


Q ss_pred             CCCC----------CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccc
Q 047036          472 TYDG----------KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFS  540 (634)
Q Consensus       472 SpDG----------k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs  540 (634)
                      +|++          .+||+ +.|++|+|||+.   ..++.+..+.+|.+..                  ..+.|++.   
T Consensus       214 ~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~---~~~~~~~~~~~h~~~V------------------~~v~~~~~---  269 (287)
T d1pgua2         214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVK---RPMKIIKALNAHKDGV------------------NNLLWETP---  269 (287)
T ss_dssp             CCCC------CCSCCEEEEEETTSCEEEEESS---CTTCCEEETTSSTTCE------------------EEEEEEET---
T ss_pred             cccccccccccCCCCeeEeecCCCeEEEEECC---CCCeEEEEeCCCCCCe------------------EEEEECCC---
Confidence            8754          68998 999999999975   1244445555554310                  12344432   


Q ss_pred             ccccCCCCceEEEEEcCCeEEEEeC
Q 047036          541 WVTENGKQERHLVATVGKFSVIWDF  565 (634)
Q Consensus       541 ~~t~~g~~E~~IvtStg~~viiWdl  565 (634)
                           +   +.+.++.|+.|.+|++
T Consensus       270 -----~---~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 -----S---TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -----T---EEEEEETTSCEEEEEE
T ss_pred             -----C---EEEEEECCCeEEEEEE
Confidence                 2   4666688999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.9e-16  Score=147.77  Aligned_cols=190  Identities=14%  Similarity=0.216  Sum_probs=112.8

Q ss_pred             EEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036          258 SLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG  334 (634)
Q Consensus       258 ~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T  334 (634)
                      +.++.+ |+.+++.|   ..|.||......     ....|.+|..       +...+.  -+.++|++++.|      ++
T Consensus        18 V~c~~~-d~~~l~sgs~Dg~i~vWd~~~~~-----~~~~l~~H~~-------~V~~v~--~~~~~l~s~s~D------~~   76 (293)
T d1p22a2          18 VYCLQY-DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTG-------SVLCLQ--YDERVIITGSSD------ST   76 (293)
T ss_dssp             EEEEEC-CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSS-------CEEEEE--CCSSEEEEEETT------SC
T ss_pred             EEEEEE-cCCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCC-------CEeeee--cccceeeccccc------cc
Confidence            334444 66677765   478888764432     2335556521       112222  245667777665      68


Q ss_pred             EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCC----------------------------CCC-------CCCCEEE
Q 047036          335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKS----------------------------SQL-------DPSESTF  379 (634)
Q Consensus       335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~----------------------------~q~-------~~g~~la  379 (634)
                      |++|++.++........+....    ..+.+....                            .+.       .....++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAV----LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCE----EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             cccccccccccccccccccccc----ccccccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            8888888887776665544321    122221000                            000       0012445


Q ss_pred             EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036          380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF  459 (634)
Q Consensus       380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L  459 (634)
                      +++.|++|++||+++.. .+..+.+|.               ..+.++.++ +.+|++|+.||+|||||+.+.+ ....+
T Consensus       153 ~~s~d~~i~~~d~~~~~-~~~~~~~~~---------------~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~  214 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCE-FVRTLNGHK---------------RGIACLQYR-DRLVVSGSSDNTIRLWDIECGA-CLRVL  214 (293)
T ss_dssp             EEETTSEEEEEETTTCC-EEEEEECCS---------------SCEEEEEEE-TTEEEEEETTSCEEEEETTTCC-EEEEE
T ss_pred             cccCCCceeeecCCCCc-EEEEEcccc---------------cccccccCC-CCeEEEecCCCEEEEEecccce-eeeee
Confidence            55555555555555433 233333222               123344443 3389999999999999998864 66778


Q ss_pred             cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .+|..+|..  +++++.+|++ +.|++|+|||+.
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHH
T ss_pred             cccceeeee--ccccceEEEEEcCCCEEEEEECC
Confidence            899988875  6788999999 899999999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.5e-17  Score=156.42  Aligned_cols=220  Identities=11%  Similarity=0.062  Sum_probs=131.8

Q ss_pred             EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCC-cceEEecCCCCCCCCC
Q 047036          258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGE-TNMMLMSPLKDGKPQA  332 (634)
Q Consensus       258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D-~~mllsss~d~~~~~~  332 (634)
                      ..++.| +|+.+|+.|   .+|+||.........  ......+|.       .|...+.+.++ ..+|++++.|      
T Consensus        14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~h~-------~~V~~v~f~~~~~~~l~sg~~d------   78 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--DLLQSLRYK-------HPLLCCNFIDNTDLQIYVGTVQ------   78 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--EEEEEEECS-------SCEEEEEEEESSSEEEEEEETT------
T ss_pred             EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce--EEEEecCCC-------CCEEEEEEeCCCCCEEEEcccc------
Confidence            566676 788777765   478899865443111  111111331       23333333333 3456666664      


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce---EEecccCC---
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI---VQNMVKGD---  406 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~---Vq~l~gh~---  406 (634)
                      ++|++||+.++.....+..|...+. ....+.++        ...+++++.|+++++||+|.....   +..+..+.   
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLG-ICRICKYG--------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSC-EEEEEEET--------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             cceeeeecccccccccccccccccc-cccccccc--------cccccccccccccceeeccccccceeeecccccccccc
Confidence            7999999999998888877766553 34355554        478999999999999999754221   11111111   


Q ss_pred             --------------------CCcccccc--ccccc-------cCcceEEEEEC-CCC-eEEEEECCCcEEEEecccccc-
Q 047036          407 --------------------SPVLHWTQ--GHQFS-------RGTNFQCFAST-GDG-SIVVGSLDGKIRLYSKTSMRQ-  454 (634)
Q Consensus       407 --------------------s~V~~~~~--g~~y~-------~~~~fssva~s-~dG-~IASGS~DGtIRLWD~~t~r~-  454 (634)
                                          ..|..|..  +....       ......+.+.. .++ .+++++.||.|++|+...... 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence                                01111110  00000       01123333333 344 678888888888887643210 


Q ss_pred             -------------ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          455 -------------AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       455 -------------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                                   ......+|..+|++|+|||+|++||+ +.|++|+|||+.    +++.+..|.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~----~~~~l~~~~  290 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ----TRKKIKNFA  290 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT----TTEEEEECC
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC----CCcEEEEec
Confidence                         11223478889999999999999999 999999999985    455555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=5.8e-17  Score=158.05  Aligned_cols=130  Identities=12%  Similarity=0.027  Sum_probs=103.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC--CeEEEEEcCCCCceEEecccCCCCcc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD--NRLCQWDMRDRSGIVQNMVKGDSPVL  410 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D--~tIklWD~R~~~~~Vq~l~gh~s~V~  410 (634)
                      +.|++||+++|++++.  +|...|  ..++|+||        |..|++++.+  ++|++||++++.  ++.+..|..   
T Consensus        24 g~v~v~d~~~~~~~~~--~~~~~v--~~~~~spD--------g~~l~~~~~~~g~~v~v~d~~~~~--~~~~~~~~~---   86 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKV--PEPLRI--RYVRRGGD--------TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLG---   86 (360)
T ss_dssp             TEEEEECTTSSBEEEC--SCCSCE--EEEEECSS--------SEEEEEEEETTEEEEEEEETTTCC--EEECCCCCC---
T ss_pred             CeEEEEECCCCcEEEc--cCCCCE--EEEEECCC--------CCEEEEEEcCCCCEEEEEECCCCc--EEEeeCCCc---
Confidence            5799999999988774  788876  46699999        4567766655  489999998754  345544332   


Q ss_pred             ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec------
Q 047036          411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT------  482 (634)
Q Consensus       411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~------  482 (634)
                                  .+.+++++|+| +||+++.++.|++|+..+++ ....+..|...+.+++|||||++||. +.      
T Consensus        87 ------------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~  153 (360)
T d1k32a3          87 ------------NVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGET  153 (360)
T ss_dssp             ------------SEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             ------------eEEeeeecccccccceeccccccccccccccc-eeeeeecccccccchhhccceeeeeeeccccccce
Confidence                        35789999999 89999999999999998864 66778889999999999999999986 32      


Q ss_pred             ----CCcEEEEEcc
Q 047036          483 ----DTYLILICTL  492 (634)
Q Consensus       483 ----D~tIrLWD~~  492 (634)
                          +..+++||+.
T Consensus       154 ~~~~~~~~~v~d~~  167 (360)
T d1k32a3         154 DGYVMQAIHVYDME  167 (360)
T ss_dssp             CSCCEEEEEEEETT
T ss_pred             eeccccceeeeccc
Confidence                3458889864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.69  E-value=3.7e-16  Score=152.31  Aligned_cols=151  Identities=10%  Similarity=0.014  Sum_probs=113.0

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      .+.+|+|++        +.|+.++.++    ..+|++||+++|++. .+..|...|  ..++|+|+        +..|++
T Consensus        46 ~~~~~spDg--------~~l~~~~~~~----g~~v~v~d~~~~~~~-~~~~~~~~v--~~~~~spd--------g~~l~~  102 (360)
T d1k32a3          46 RYVRRGGDT--------KVAFIHGTRE----GDFLGIYDYRTGKAE-KFEENLGNV--FAMGVDRN--------GKFAVV  102 (360)
T ss_dssp             EEEEECSSS--------EEEEEEEETT----EEEEEEEETTTCCEE-ECCCCCCSE--EEEEECTT--------SSEEEE
T ss_pred             EEEEECCCC--------CEEEEEEcCC----CCEEEEEECCCCcEE-EeeCCCceE--Eeeeeccc--------ccccce
Confidence            455566665        4444444332    158999999988754 677888876  46699999        679999


Q ss_pred             EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEE----------ECCCcEEEEec
Q 047036          381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG----------SLDGKIRLYSK  449 (634)
Q Consensus       381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG----------S~DGtIRLWD~  449 (634)
                      ++.++.+++||+..+.. ...+..|.               ..+.+++++|+| +||.+          +.++.+++||.
T Consensus       103 ~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~  166 (360)
T d1k32a3         103 ANDRFEIMTVDLETGKP-TVIERSRE---------------AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  166 (360)
T ss_dssp             EETTSEEEEEETTTCCE-EEEEECSS---------------SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             eccccccccccccccce-eeeeeccc---------------ccccchhhccceeeeeeeccccccceeeccccceeeecc
Confidence            99999999999987653 34443332               234578899999 67754          35567999999


Q ss_pred             cccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          450 TSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       450 ~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                      .+.+  ...+..|...+.++.|||||++|++ +.|+.+++||..
T Consensus       167 ~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         167 EGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             TTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccCc--eeeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            8753  3445567788999999999999999 899999999965

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.5e-16  Score=147.56  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=95.8

Q ss_pred             cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEE--ecccCCCCccccccccccccC
Q 047036          344 KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQ--NMVKGDSPVLHWTQGHQFSRG  421 (634)
Q Consensus       344 K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq--~l~gh~s~V~~~~~g~~y~~~  421 (634)
                      |+|+-.++|++.|  +.++|+|+        +++||+||.|++|++||++.+.+...  ...+|.               
T Consensus         2 ~~v~~~~~h~d~I--~~l~fsp~--------~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~---------------   56 (342)
T d1yfqa_           2 QIVQIEQAPKDYI--SDIKIIPS--------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---------------   56 (342)
T ss_dssp             EEEECSSCCSSCE--EEEEEEGG--------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---------------
T ss_pred             CeEEcCCCCCCCE--EEEEEeCC--------CCEEEEEECCCeEEEEEccCCCcceEEEEecCCC---------------
Confidence            6788889999986  56799998        68999999999999999987643211  111233               


Q ss_pred             cceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036          422 TNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF  493 (634)
Q Consensus       422 ~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~  493 (634)
                      ..+.|++|+++ + .||+|+.||+|++|+.............+...+..+.+.+++..+++ +.|+++++||++.
T Consensus        57 ~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             CCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence            35688999875 4 69999999999999988754222333345555667778888899998 9999999999863

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.9e-14  Score=151.30  Aligned_cols=136  Identities=8%  Similarity=-0.021  Sum_probs=100.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-eEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-IVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-~Vq~l~gh~s~V~~  411 (634)
                      ++|.+||+.||++++++.+|. .|  ..++||||        |+++++++.|++|++||+.+++. .+..+.. ..    
T Consensus        42 g~v~v~D~~t~~v~~~~~~g~-~~--~~v~fSpD--------G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~-~~----  105 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLDTGY-AV--HISRLSAS--------GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GS----  105 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECSS-CE--EEEEECTT--------SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CS----
T ss_pred             CEEEEEECCCCcEEEEEeCCC-Ce--eEEEECCC--------CCEEEEEcCCCCEEEEEeeCCCceEEEEEec-CC----
Confidence            799999999999999999885 34  46699999        67899999999999999987653 2333320 00    


Q ss_pred             cccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccccccccccC-----------CCCCeEEEEECCCCCEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMRQAKTAFPG-----------LGSPITHVDVTYDGKWI  478 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r~akt~L~G-----------H~d~ItsVdfSpDGk~L  478 (634)
                         +|    ..-..+.+++||| +| |+++.+++|+|||..+++ .+..+++           +.....+|.+||||+.+
T Consensus       106 ---~~----~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         106 ---EA----RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             ---EE----EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             ---CC----CCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence               01    0112334678899 54 789999999999998864 4444433           44567789999999887


Q ss_pred             EE--EcCCcEEEEEcc
Q 047036          479 LG--TTDTYLILICTL  492 (634)
Q Consensus       479 lS--S~D~tIrLWD~~  492 (634)
                      +.  +.++.|.+||..
T Consensus       178 ~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         178 IVNVKETGKILLVDYT  193 (432)
T ss_dssp             EEEETTTTEEEEEETT
T ss_pred             EEEEccCCeEEEEEcc
Confidence            54  557899999964

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=1.9e-14  Score=148.83  Aligned_cols=135  Identities=8%  Similarity=0.021  Sum_probs=95.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V~~  411 (634)
                      ++|++||+.||+++.++.+|.. |  ..++||||        |+++++++.|++|++||+.+++.. +..+....     
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~~-~--~~vafSPD--------Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~-----  105 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGYA-V--HISRMSAS--------GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI-----  105 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCSS-E--EEEEECTT--------SCEEEEEETTSEEEEEETTSSSCEEEEEEECCS-----
T ss_pred             CEEEEEECCCCcEEEEEeCCCC-e--eEEEECCC--------CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC-----
Confidence            7999999999999999999864 4  46699999        678999999999999999887532 22221000     


Q ss_pred             cccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcCCcEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLI  487 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIr  487 (634)
                         +|.    .-..+++++||| +| ++++.+++|++||..+++ ....+.+|+..+..+.|+++|...+ + +.|+...
T Consensus       106 ---~~~----~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2         106 ---EAR----SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             ---EEE----EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             ---CCc----ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence               110    112345678999 55 556699999999998864 6667777777776666666665432 2 5555555


Q ss_pred             EEEc
Q 047036          488 LICT  491 (634)
Q Consensus       488 LWD~  491 (634)
                      +|..
T Consensus       178 ~~~~  181 (426)
T d1hzua2         178 IVNV  181 (426)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.53  E-value=2e-12  Score=122.55  Aligned_cols=157  Identities=12%  Similarity=0.143  Sum_probs=108.8

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEE
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLC  388 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIk  388 (634)
                      .+.+..+++.++.+...+     .++++||..+++.+..+..+...   ..+.++|+        +..++++.. .+.+.
T Consensus       120 ~~~~~~dg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~  183 (301)
T d1l0qa2         120 GLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGRSP---KGIAVTPD--------GTKVYVANFDSMSIS  183 (301)
T ss_dssp             EEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCSSE---EEEEECTT--------SSEEEEEETTTTEEE
T ss_pred             EEEeecCCCeeeeeeccc-----cceeeeeccccceeeecccCCCc---eEEEeecc--------ccceeeecccccccc
Confidence            455566777666554432     78999999999999999887652   34589998        456666655 46777


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE---CCCcEEEEeccccccccccccCCCC
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS---LDGKIRLYSKTSMRQAKTAFPGLGS  464 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS---~DGtIRLWD~~t~r~akt~L~GH~d  464 (634)
                      +|+.... .+...+..                ......++++++| .+++++   .+++|++||+.+++ ....++. +.
T Consensus       184 ~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~~-~~  244 (301)
T d1l0qa2         184 VIDTVTN-SVIDTVKV----------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPV-GP  244 (301)
T ss_dssp             EEETTTT-EEEEEEEC----------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEEC-CS
T ss_pred             cccccce-eeeecccc----------------cCCcceeeccccccccccccccceeeeeeeeecCCCe-EEEEEcC-CC
Confidence            7777654 33333321                1123566788888 555443   45789999998864 5556664 45


Q ss_pred             CeEEEEECCCCCEEE-E-EcCCcEEEEEcccccCCCCeeeeec
Q 047036          465 PITHVDVTYDGKWIL-G-TTDTYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       465 ~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      .+++|+|||||++|+ + +.|++|++||+.    +|+.+..+.
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~D~~----t~~~~~~~~  283 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTA----TNTITATMA  283 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETT----TTEEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEEECC----CCeEEEEEe
Confidence            689999999999984 5 568999999985    677665553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=3.1e-13  Score=141.91  Aligned_cols=163  Identities=12%  Similarity=-0.003  Sum_probs=112.2

Q ss_pred             cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEE---eccCCCcceeEEEEecCCCCCCCCCC
Q 047036          301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEW---KFEKDGTDITMRDITNDTKSSQLDPS  375 (634)
Q Consensus       301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~l---kgH~~~V~I~vvsfsPd~K~~q~~~g  375 (634)
                      .+.+|+|++.        .|++++.|      ++|++||+.|++  .+.++   .+|.+.+  ...+|+||        |
T Consensus        65 ~~v~fSpDG~--------~l~~~s~d------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~--~s~~~SpD--------G  120 (432)
T d1qksa2          65 HISRLSASGR--------YLFVIGRD------GKVNMIDLWMKEPTTVAEIKIGSEARSIE--TSKMEGWE--------D  120 (432)
T ss_dssp             EEEEECTTSC--------EEEEEETT------SEEEEEETTSSSCCEEEEEECCSEEEEEE--ECCSTTCT--------T
T ss_pred             eEEEECCCCC--------EEEEEcCC------CCEEEEEeeCCCceEEEEEecCCCCCCeE--EecccCCC--------C
Confidence            5666776664        44444443      699999999987  34443   4565543  22377888        4


Q ss_pred             CE-EEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEecccc
Q 047036          376 ES-TFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSM  452 (634)
Q Consensus       376 ~~-laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~  452 (634)
                      ++ +++++.+++|++||+.+++ +++.+..|...+.    ...+.......+++++++| + +++.+.++.|.+||..+.
T Consensus       121 ~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~----~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         121 KYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYD----EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  195 (432)
T ss_dssp             TEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTT----TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             CEEEEEcCCCCeEEEEeCcccc-ceeeeccCCcccc----ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC
Confidence            54 5789999999999999865 4566655543321    1223344456778889998 4 577888999999998765


Q ss_pred             ccccccccCCCCCeEEEEECCCCCEEEE-Ec-CCcEEEEEcc
Q 047036          453 RQAKTAFPGLGSPITHVDVTYDGKWILG-TT-DTYLILICTL  492 (634)
Q Consensus       453 r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D~tIrLWD~~  492 (634)
                      +..+..--.++..+.+++|+|||++|++ +. ++.|.+||+.
T Consensus       196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            3222222247788999999999999887 44 6788888875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=4.6e-13  Score=128.45  Aligned_cols=156  Identities=13%  Similarity=0.123  Sum_probs=109.1

Q ss_pred             eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCc
Q 047036          319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~  397 (634)
                      .+++++.|      ++|++||+++++++.++..+.....+..++|+||        |+.+ ++|+.+++|.+||+++++ 
T Consensus         3 ~~vt~~~d------~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD--------g~~l~v~~~~~~~v~v~D~~t~~-   67 (337)
T d1pbyb_           3 YILAPARP------DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--------GRIAYATVNKSESLVKIDLVTGE-   67 (337)
T ss_dssp             EEEEEETT------TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--------SSEEEEEETTTTEEEEEETTTCC-
T ss_pred             EEEEEcCC------CEEEEEECCCCeEEEEEECCCCCCCccEEEECCC--------CCEEEEEECCCCeEEEEECCCCc-
Confidence            45566554      6899999999999999986543222245699999        4555 678889999999999865 


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE------------CCCcEEEEeccccccccccccCCCC
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS------------LDGKIRLYSKTSMRQAKTAFPGLGS  464 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS------------~DGtIRLWD~~t~r~akt~L~GH~d  464 (634)
                      ++..+..+....          .......++++|+| +|++++            .++.+.+||..+++ .+..++. ..
T Consensus        68 ~~~~~~~~~~~~----------~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~-~~  135 (337)
T d1pbyb_          68 TLGRIDLSTPEE----------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-PR  135 (337)
T ss_dssp             EEEEEECCBTTE----------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-CS
T ss_pred             EEEEEecCCCcc----------cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEeccc-cC
Confidence            445554332110          11123457889998 677766            46889999988864 5566664 45


Q ss_pred             CeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecC
Q 047036          465 PITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       465 ~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                      .+.+++|+|||++|+++. +.+.+||+.    .++....+..
T Consensus       136 ~~~~~~~s~dg~~l~~~~-~~~~~~d~~----~~~~~~~~~~  172 (337)
T d1pbyb_         136 QITMLAWARDGSKLYGLG-RDLHVMDPE----AGTLVEDKPI  172 (337)
T ss_dssp             SCCCEEECTTSSCEEEES-SSEEEEETT----TTEEEEEECS
T ss_pred             CceEEEEcCCCCEEEEEc-CCcceeeee----cCcEEEEeec
Confidence            688999999999998842 457789975    4555554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.48  E-value=9.4e-12  Score=117.84  Aligned_cols=130  Identities=16%  Similarity=0.207  Sum_probs=100.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ++|.+||+++|++++++......   .-++|+||        |..| ++++.+++|++||+.++. .+..+..|.     
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p---~~va~spd--------G~~l~v~~~~~~~i~v~d~~t~~-~~~~~~~~~-----   74 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNP---MGAVISPD--------GTKVYVANAHSNDVSIIDTATNN-VIATVPAGS-----   74 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSE---EEEEECTT--------SSEEEEEEGGGTEEEEEETTTTE-EEEEEECSS-----
T ss_pred             CEEEEEECCCCeEEEEEECCCCc---eEEEEeCC--------CCEEEEEECCCCEEEEEECCCCc-eeeeeeccc-----
Confidence            68999999999999999876542   34599999        5555 677889999999998864 456654322     


Q ss_pred             cccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI  487 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr  487 (634)
                                 ....++++++| + +++++.++.+++||..+++ ....+.. ...+..++|+|||++++.  ..+.++.
T Consensus        75 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~  141 (301)
T d1l0qa2          75 -----------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVS  141 (301)
T ss_dssp             -----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             -----------cccccccccccccccccccccceeeecccccce-eeeeccc-cccceEEEeecCCCeeeeeecccccee
Confidence                       23567888888 4 5667788999999988763 5556654 456789999999999876  4578899


Q ss_pred             EEEcc
Q 047036          488 LICTL  492 (634)
Q Consensus       488 LWD~~  492 (634)
                      +|+..
T Consensus       142 ~~~~~  146 (301)
T d1l0qa2         142 VINTV  146 (301)
T ss_dssp             EEETT
T ss_pred             eeecc
Confidence            99975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=1.2e-12  Score=135.26  Aligned_cols=186  Identities=8%  Similarity=0.007  Sum_probs=116.3

Q ss_pred             CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE--E-
Q 047036          273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE--W-  349 (634)
Q Consensus       273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~--l-  349 (634)
                      .+|.||....+.     .+..|..+....+.+|+|++        ++|++++.|      ++|++||+.||+....  + 
T Consensus        42 g~v~vwD~~t~~-----~~~~l~~g~~~~~vafSPDG--------k~l~~~~~d------~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          42 GQIALVDGDSKK-----IVKVIDTGYAVHISRMSASG--------RYLLVIGRD------ARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             TEEEEEETTTCS-----EEEEEECCSSEEEEEECTTS--------CEEEEEETT------SEEEEEETTSSSCEEEEEEE
T ss_pred             CEEEEEECCCCc-----EEEEEeCCCCeeEEEECCCC--------CEEEEEeCC------CCEEEEEccCCceeEEEEEe
Confidence            355556554432     22234333233566666666        445555543      6999999999985443  2 


Q ss_pred             --eccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEE
Q 047036          350 --KFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQC  426 (634)
Q Consensus       350 --kgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fss  426 (634)
                        .+|.+.+  ..++|+||        |+++ +++..+++|++||..+.. +++.+.+|...+.    ...+........
T Consensus       103 ~~~~~~~~~--~s~~~spD--------G~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~  167 (426)
T d1hzua2         103 IGIEARSVE--SSKFKGYE--------DRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVD----TQTYHPEPRVAA  167 (426)
T ss_dssp             CCSEEEEEE--ECCSTTCT--------TTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSS----SCCEESCCCEEE
T ss_pred             CCCCCcceE--EeeeecCC--------CCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCcc----ceeecCCCceeE
Confidence              3666543  23478888        4554 666789999999999865 4566655544331    122333344456


Q ss_pred             EEECCCC-eE-EEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E-cCCcEEEEEcc
Q 047036          427 FASTGDG-SI-VVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T-TDTYLILICTL  492 (634)
Q Consensus       427 va~s~dG-~I-ASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~~  492 (634)
                      ++.++++ .+ .+....+.|.+++....+.......+++..+.++.|+|+|++++. . .++.+.+|+..
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence            6777777 43 344455677777765443223344478999999999999999887 3 46778888865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=1.2e-11  Score=118.51  Aligned_cols=174  Identities=10%  Similarity=0.025  Sum_probs=112.1

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcc---eeEEEEecCCCCCCCCCCCEEEEEe------------CCCeEEEEEcCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTD---ITMRDITNDTKSSQLDPSESTFLGL------------DDNRLCQWDMRDRSG  397 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~---I~vvsfsPd~K~~q~~~g~~laSGS------------~D~tIklWD~R~~~~  397 (634)
                      ++|++||+.+|+++.++..|.....   +.-++|+|+        +..++++.            .+..+.+||..++. 
T Consensus        56 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~d--------g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-  126 (337)
T d1pbyb_          56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPD--------GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-  126 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTT--------SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-
T ss_pred             CeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCC--------CcEEEEeecCCcceeeeccccccceeeccccCCe-
Confidence            6899999999999999987654210   123589998        55677665            46888999998754 


Q ss_pred             eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc----------------------
Q 047036          398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ----------------------  454 (634)
Q Consensus       398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~----------------------  454 (634)
                      ++..+..+                ...++++++++| ++++++.  .+.+||..+++.                      
T Consensus       127 ~~~~~~~~----------------~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (337)
T d1pbyb_         127 RRKAFEAP----------------RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             EEEEEECC----------------SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             EEEecccc----------------CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCccee
Confidence            33444211                123467888888 6777764  466777654210                      


Q ss_pred             -------------------------------------------ccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036          455 -------------------------------------------AKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICT  491 (634)
Q Consensus       455 -------------------------------------------akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~  491 (634)
                                                                 ....+.+|...+..++++|++.++++ .+++|++||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~d~  267 (337)
T d1pbyb_         189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-AYNVLESFDL  267 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE-EESEEEEEET
T ss_pred             eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE-ccccEEEEEC
Confidence                                                       00112245566778889999998765 3689999998


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                      .    +++.+..+.-                .+.   ...+.|+|+        |  ....+++.++.|.|||++.
T Consensus       268 ~----~~~~~~~~~~----------------~~~---~~~~~~s~d--------G--~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         268 E----KNASIKRVPL----------------PHS---YYSVNVSTD--------G--STVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             T----TTEEEEEEEC----------------SSC---CCEEEECTT--------S--CEEEEESBSSEEEEEETTT
T ss_pred             C----CCcEEEEEcC----------------CCC---EEEEEECCC--------C--CEEEEEeCCCcEEEEECCC
Confidence            5    4554433221                000   023455555        4  3455677899999999975

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=1e-10  Score=112.22  Aligned_cols=100  Identities=6%  Similarity=-0.160  Sum_probs=67.7

Q ss_pred             EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCC
Q 047036          435 IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPA  514 (634)
Q Consensus       435 IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~  514 (634)
                      +++++.++.|.+||..++......+.+|...+.++.++|++.++++..++.|.+||+.    .++.+..+..  +     
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~----~~~~~~~~~~--~-----  291 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK----QRKLIKAANL--D-----  291 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETT----TTEEEEEEEC--S-----
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECC----CCcEEEEEcC--C-----
Confidence            3445566678888877654333455678889999999999999998666789999975    4554443321  1     


Q ss_pred             ceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036          515 PRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ  567 (634)
Q Consensus       515 pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~  567 (634)
                               +.   ...+.|+|+        |  .+..+++.++.|.|||++.
T Consensus       292 ---------~~---~~~va~s~D--------G--~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         292 ---------HT---YYCVAFDKK--------G--DKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             ---------SC---CCEEEECSS--------S--SCEEEESBSSEEEEEETTT
T ss_pred             ---------CC---EEEEEEcCC--------C--CEEEEEeCCCcEEEEECcc
Confidence                     00   023555555        4  3566677899999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.31  E-value=1e-10  Score=112.14  Aligned_cols=158  Identities=12%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCC
Q 047036          317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRD  394 (634)
Q Consensus       317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~  394 (634)
                      ++.|++++.+      ++|++||+.|++++++++. |...+  .-++|+||        |..+ ++++.+++|++||+.+
T Consensus         8 ~~~l~~~~~~------~~v~v~D~~t~~~~~t~~~~~~~~p--~~l~~spD--------G~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_           8 HEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGP--GTAMMAPD--------NRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             CEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSS--CEEEECTT--------SSEEEEEETTTTEEEEEETTT
T ss_pred             CcEEEEEcCC------CEEEEEECCCCCEEEEEEcCCCCCc--ceEEECCC--------CCEEEEEECCCCcEEEEeCcc
Confidence            3455666554      6899999999999999985 44443  34599999        4454 6777899999999998


Q ss_pred             CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE------------CCCcEEEEeccccccccccccC
Q 047036          395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS------------LDGKIRLYSKTSMRQAKTAFPG  461 (634)
Q Consensus       395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS------------~DGtIRLWD~~t~r~akt~L~G  461 (634)
                      +. .+..+.......         ........+++++|| +|++++            .++.|++||..+++ ....+..
T Consensus        72 ~~-~~~~~~~~~~~~---------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~  140 (346)
T d1jmxb_          72 CK-NTFHANLSSVPG---------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRT  140 (346)
T ss_dssp             TE-EEEEEESCCSTT---------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEE
T ss_pred             Ce-eeeeeccccccc---------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce-eeeEEEe
Confidence            64 344443111110         011123457889999 676665            58889999988754 3333432


Q ss_pred             --CCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCC
Q 047036          462 --LGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGR  507 (634)
Q Consensus       462 --H~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh  507 (634)
                        ....+..+.+++||+.++++  ..+.+|++.    +++.+..+..+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~  182 (346)
T d1jmxb_         141 FPMPRQVYLMRAADDGSLYVAG--PDIYKMDVK----TGKYTVALPLR  182 (346)
T ss_dssp             EECCSSCCCEEECTTSCEEEES--SSEEEECTT----TCCEEEEECST
T ss_pred             eeccCceEEEEecCCCEEEEeC--CcceEEEcc----CCCEEEEEecC
Confidence              33567888999999877663  568899975    56666666544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.28  E-value=5.9e-10  Score=109.89  Aligned_cols=167  Identities=12%  Similarity=0.041  Sum_probs=106.2

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc--------
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK--------  404 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g--------  404 (634)
                      ..+.+|+..+++.+.....+.      .+.|+|+++       ..+++++.|+++.+||...+.. ......        
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~------~~~~s~~g~-------~~~v~~~~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~  213 (373)
T d2madh_         148 PAVGLVVQGGSSDDQLLSSPT------CYHIHPGAP-------STFYLLCAQGGLAKTDHAGGAA-GAGLVGAMLTAAQN  213 (373)
T ss_pred             CceEEeeccCCeEEEEeccce------eEEEecCCC-------cEEEEEcCCCeEEEEEcCCcee-eEEEeeeccccCcc
Confidence            579999999998877765543      348899843       4678899999999999876432 111100        


Q ss_pred             ------------------CCCCccccccccccc------------------cCcceEEEEECCCC-----------eEEE
Q 047036          405 ------------------GDSPVLHWTQGHQFS------------------RGTNFQCFASTGDG-----------SIVV  437 (634)
Q Consensus       405 ------------------h~s~V~~~~~g~~y~------------------~~~~fssva~s~dG-----------~IAS  437 (634)
                                        ....+..+.......                  .......++++++|           .+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  293 (373)
T d2madh_         214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             ceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEe
Confidence                              000111111000000                  00001122333333           4556


Q ss_pred             EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEE--EE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCC
Q 047036          438 GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWI--LG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPA  514 (634)
Q Consensus       438 GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~L--lS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~  514 (634)
                      +..++.|++||..+++ ....++ |+..+.+|+|||||+++  ++ +.|++|++||+.    +|+.+..+.++-    ..
T Consensus       294 ~~~~~~v~~~d~~t~~-~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~----tg~~~~~~~~~g----~~  363 (373)
T d2madh_         294 HAAAKEVTSVTGLVGQ-TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG----AGDQDQSTVELG----SG  363 (373)
T ss_pred             ecCCCeEEEEECCCCc-EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC----CCCEEEEECCCC----CC
Confidence            7778899999998864 455554 67789999999999964  45 789999999986    788887776553    45


Q ss_pred             ceeEeecCC
Q 047036          515 PRLLKLTPL  523 (634)
Q Consensus       515 pr~L~L~Pe  523 (634)
                      |..|.|.++
T Consensus       364 P~~l~~~~~  372 (373)
T d2madh_         364 PQVLSVMNE  372 (373)
T ss_pred             CcEEEEecC
Confidence            677776544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=9e-11  Score=112.91  Aligned_cols=136  Identities=7%  Similarity=0.055  Sum_probs=92.2

Q ss_pred             CcEEEEeCCCC---cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036          333 PGVQQLDIETG---KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       333 ~TIrlWDleTG---K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                      ++|++||+.+.   ++++.+ .|.+.|. . ++|+||        |+.| +++..|++|++|++....... .+..|.. 
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~-~~~~~v~-~-la~spD--------G~~L~v~~~~d~~i~~~~i~~~~~~~-~~~~~~~-   80 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVV-DVPGQVQ-P-MVVSPD--------KRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESA-   80 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEE-ECSSCCC-C-EEECTT--------SSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEE-
T ss_pred             CcEEEEEEcCCCCeEEEEEE-cCCCCEe-E-EEEeCC--------CCEEEEEECCCCeEEEEEEeCCCCcE-EEeeecc-
Confidence            69999998654   334444 4556553 4 599999        5666 455569999999998654322 2211110 


Q ss_pred             ccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEeccccc-cccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYDGKWILG-TT-D  483 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D  483 (634)
                                 ......+++++||| +|++++. +++|++|+..... ........|...+.++.|||||++++. .. +
T Consensus        81 -----------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~  149 (333)
T d1ri6a_          81 -----------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ  149 (333)
T ss_dssp             -----------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             -----------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccc
Confidence                       11123468999999 6888874 7799999876532 122334567788999999999999988 43 5


Q ss_pred             CcEEEEEcc
Q 047036          484 TYLILICTL  492 (634)
Q Consensus       484 ~tIrLWD~~  492 (634)
                      ..|.+|+..
T Consensus       150 ~~i~~~~~~  158 (333)
T d1ri6a_         150 DRICLFTVS  158 (333)
T ss_dssp             TEEEEEEEC
T ss_pred             ceeeEEEec
Confidence            679999865

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.13  E-value=2.4e-09  Score=105.49  Aligned_cols=144  Identities=13%  Similarity=0.001  Sum_probs=98.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE----------eCCCeEEEEEcCCCCceEEec
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG----------LDDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG----------S~D~tIklWD~R~~~~~Vq~l  402 (634)
                      ..|++||.++|+++.++.+|...    .++|+||        |..++++          +.+++|.+||+++++ ++..+
T Consensus        47 ~~v~v~D~~tg~~~~~~~~~~~~----~~a~SpD--------G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~  113 (373)
T d2madh_          47 IQQWVLDAGSGSILGHVNGGFLP----NPVAAHS--------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFL-PIADI  113 (373)
T ss_pred             ceEEEEECCCCCEEEEEeCCCCc----cEEEcCC--------CCEEEEEeecCCcccccccceEEEEEECCCCc-EEEEE
Confidence            57999999999999999888752    3599999        5566665          457899999999865 35555


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEE--EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV--GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL  479 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS--GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll  479 (634)
                      ..+.....        .....-..++++++| .+++  ...++.+.+|+..+.+     ..+|...+.++.|+|+|+.++
T Consensus       114 ~~~~~~~~--------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~g~~~~  180 (373)
T d2madh_         114 ELPDAPRF--------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-----DDQLLSSPTCYHIHPGAPSTF  180 (373)
T ss_pred             ecCCccee--------EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-----EEEEeccceeEEEecCCCcEE
Confidence            43332210        001112345777887 4444  4556789999976532     234555678999999998875


Q ss_pred             -E-EcCCcEEEEEcccccCCCCeeeeecC
Q 047036          480 -G-TTDTYLILICTLFSDKDGKTKTGFSG  506 (634)
Q Consensus       480 -S-S~D~tIrLWD~~~~~~~G~~~~gF~g  506 (634)
                       + +.|+++.+|+..    .+.....+..
T Consensus       181 v~~~~dg~~~~~~~~----~~~~~~~~~~  205 (373)
T d2madh_         181 YLLCAQGGLAKTDHA----GGAAGAGLVG  205 (373)
T ss_pred             EEEcCCCeEEEEEcC----CceeeEEEee
Confidence             5 789999999975    3444444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=2.8e-09  Score=103.74  Aligned_cols=181  Identities=13%  Similarity=0.049  Sum_probs=106.5

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcc-----eeEEEEecCCCC-----------------
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTD-----ITMRDITNDTKS-----------------  369 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~-----I~vvsfsPd~K~-----------------  369 (634)
                      .++.+++.++......    +..+++||+.+|+.++++..+.....     ...+.+++|++.                 
T Consensus       112 ~~s~dg~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         112 SLTPDGKTLLFYQFSP----APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EECTTSSEEEEEECSS----SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             EEecCCCeeEEecCCC----CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            4455555544432211    26899999999999998876543110     012355555431                 


Q ss_pred             -------------CCCCCCCEEEEEeCCCeEEEEEcCCCCceE-EecccCCCCccccccccccccCcceEEEEECCCC-e
Q 047036          370 -------------SQLDPSESTFLGLDDNRLCQWDMRDRSGIV-QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S  434 (634)
Q Consensus       370 -------------~q~~~g~~laSGS~D~tIklWD~R~~~~~V-q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~  434 (634)
                                   ....++..++.++.++++++|++..+...+ ....+|.....    ...+. ......++++++| .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~-p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER----ADGWR-PGGWQQVAYHRALDR  262 (355)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH----HTTEE-ECSSSCEEEETTTTE
T ss_pred             cccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE----eeeee-ccceEEEEEeCCCCe
Confidence                         001123467788889999999988754211 11111110000    00000 0011235778888 5


Q ss_pred             EEEEECC----------CcEEEEeccccccccccccCCCCCeEEEEECCCCCE-E-EE-EcCCcEEEEEcccccCCCCee
Q 047036          435 IVVGSLD----------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW-I-LG-TTDTYLILICTLFSDKDGKTK  501 (634)
Q Consensus       435 IASGS~D----------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~-L-lS-S~D~tIrLWD~~~~~~~G~~~  501 (634)
                      ++.++.+          +.|++||..+++ ...+++ ++..+.+|+|||||++ | ++ +.|++|++||+.    +|+.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~----tg~~~  336 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE----SGEEL  336 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT----TCCEE
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCc-EEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC----CCCEE
Confidence            5555443          479999998864 555565 4456899999999984 3 34 458999999986    78888


Q ss_pred             eeecCC
Q 047036          502 TGFSGR  507 (634)
Q Consensus       502 ~gF~gh  507 (634)
                      ..+.++
T Consensus       337 ~~i~~~  342 (355)
T d2bbkh_         337 RSVNQL  342 (355)
T ss_dssp             EEECCC
T ss_pred             EEEeCc
Confidence            777644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=2.9e-09  Score=103.63  Aligned_cols=138  Identities=16%  Similarity=0.036  Sum_probs=88.3

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE----------EeCCCeEEEEEcCCCCceEEe
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL----------GLDDNRLCQWDMRDRSGIVQN  401 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS----------GS~D~tIklWD~R~~~~~Vq~  401 (634)
                      ..+|++||+.+|+++.++.++..    ..++||||+        +.|+.          |..|++|++||+.+++ ++..
T Consensus        27 ~~~v~v~D~~tg~~~~~~~~g~~----~~~a~SpDg--------~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~-~~~~   93 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDG--------SFIAHASTVFSRIARGERTDYVEVFDPVTLL-PTAD   93 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSS----CEEEECTTS--------SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEE
T ss_pred             cCeEEEEECCCCcEEEEEECCCC----CceEEcCCC--------CEEEEEeCCCccccccCCCCEEEEEECCCCC-EEEE
Confidence            36899999999999999988764    245999994        45554          4568999999999865 3455


Q ss_pred             cccCCCCccccccccccccCcceEEEEECCCC-eEEEE--ECCCcEEEEeccccccccccccCCCC-------CeEEEEE
Q 047036          402 MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG--SLDGKIRLYSKTSMRQAKTAFPGLGS-------PITHVDV  471 (634)
Q Consensus       402 l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG--S~DGtIRLWD~~t~r~akt~L~GH~d-------~ItsVdf  471 (634)
                      +..+....        .........++++++| +++++  +.+..+++||..+++ ....++.+..       ....+.+
T Consensus        94 ~~~~~~~~--------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          94 IELPDAPR--------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             EEETTCCC--------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEETTEEEEE
T ss_pred             EecCCcce--------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc-EeeEEecCCcceEeecCCcceEEE
Confidence            54332211        1111112346789998 56555  467889999998764 4444543332       3345677


Q ss_pred             CCCCCEEEE--EcCCcEEEEEc
Q 047036          472 TYDGKWILG--TTDTYLILICT  491 (634)
Q Consensus       472 SpDGk~LlS--S~D~tIrLWD~  491 (634)
                      ++||+.++.  ..+..+.+++.
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEEC
T ss_pred             cCCCCEEEEEecCCCeEEEEec
Confidence            777776654  33444555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.4e-07  Score=90.06  Aligned_cols=202  Identities=13%  Similarity=0.176  Sum_probs=115.4

Q ss_pred             cEEEeee-CCCeEE-Ee---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036          257 QSLTLGA-LDNSFL-VS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ  331 (634)
Q Consensus       257 ~~LavG~-~D~sfv-v~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~  331 (634)
                      +...+++ +|+.+| +.   +..|.+|.....+.... .......       ...|.. +.+++|++.|+.+..++    
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~-~~~~~~~-------~~~p~~-l~~spDg~~l~v~~~~~----  104 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESAL-------PGSLTH-ISTDHQGQFVFVGSYNA----  104 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEEC-------SSCCSE-EEECTTSSEEEEEETTT----
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE-Eeeeccc-------CCCceE-EEEcCCCCEEeecccCC----
Confidence            3445556 787765 33   25789998755441111 1111111       122333 33455556666655443    


Q ss_pred             CCcEEEEeCCCCcEEEEE--eccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEEEcCCCCceEEecccCCCC
Q 047036          332 APGVQQLDIETGKIVTEW--KFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQWDMRDRSGIVQNMVKGDSP  408 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~l--kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklWD~R~~~~~Vq~l~gh~s~  408 (634)
                       .+|++|+...+......  ..|...+  ..+.|+|+        +..+++++ .+..|++|+...............  
T Consensus       105 -~~v~~~~~~~~~~~~~~~~~~~~~~~--~~v~~s~d--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--  171 (333)
T d1ri6a_         105 -GNVSVTRLEDGLPVGVVDVVEGLDGC--HSANISPD--------NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV--  171 (333)
T ss_dssp             -TEEEEEEEETTEEEEEEEEECCCTTB--CCCEECTT--------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--
T ss_pred             -CceeeeccccccceecccccCCCccc--eEEEeeec--------ceeeeccccccceeeEEEeccCCcceeeeceee--
Confidence             68999998877655443  3454444  34589998        45555554 668899999886543221111000  


Q ss_pred             ccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccc------ccccc---CCCCCeEEEEECCCCCE
Q 047036          409 VLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQA------KTAFP---GLGSPITHVDVTYDGKW  477 (634)
Q Consensus       409 V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~a------kt~L~---GH~d~ItsVdfSpDGk~  477 (634)
                              ..........+++++++ . +.++...+.+.+|+.......      ...++   ........++++|||++
T Consensus       172 --------~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         172 --------TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             --------ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             --------eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence                    01122234678899888 4 345567778888886432100      11111   23345678999999999


Q ss_pred             EEE--EcCCcEEEEEcc
Q 047036          478 ILG--TTDTYLILICTL  492 (634)
Q Consensus       478 LlS--S~D~tIrLWD~~  492 (634)
                      ++.  ..++++.+|++.
T Consensus       244 ~~~~~~~~~~~~~~~~~  260 (333)
T d1ri6a_         244 LYACDRTASLITVFSVS  260 (333)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             eeeecccCCeEEEEEEc
Confidence            887  457899999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=1.4e-08  Score=104.91  Aligned_cols=130  Identities=12%  Similarity=0.067  Sum_probs=90.2

Q ss_pred             CcEEEEeCCCCcEEEEEecc-----CCCcceeEEEEecCCCCCCCCCCCEEEEEeC---------CCeEEEEEcCCCCce
Q 047036          333 PGVQQLDIETGKIVTEWKFE-----KDGTDITMRDITNDTKSSQLDPSESTFLGLD---------DNRLCQWDMRDRSGI  398 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH-----~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~---------D~tIklWD~R~~~~~  398 (634)
                      ++|++||+.+|+....+..|     ...|  ..+.||||        ++.|+.++.         ++.+.+||+.++.  
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i--~~~~~SpD--------g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~--  103 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSI--NDYSISPD--------GQFILLEYNYVKQWRHSYTASYDIYDLNKRQ--  103 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCC--CEEEECTT--------SSEEEEEEEEEECSSSCEEEEEEEEETTTTE--
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCcc--ceeEECCC--------CCEEEEEECCcceeeeccCceEEEEECCCCc--
Confidence            46999999999988766555     3554  45699999        567887754         5678899998753  


Q ss_pred             EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-CC--------------
Q 047036          399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GL--------------  462 (634)
Q Consensus       399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH--------------  462 (634)
                      +..+..|..               .+..+.+|||| +||.. .++.|.+|+..++. ...... +.              
T Consensus       104 ~~~l~~~~~---------------~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1         104 LITEERIPN---------------NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             ECCSSCCCT---------------TEEEEEECSSTTCEEEE-ETTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHH
T ss_pred             ccccccCCc---------------cccccccccCcceeeEe-ecccceEEECCCCc-eeeeeeccCCCcccccccceeee
Confidence            344443322               34678899999 67774 57899999988764 332221 21              


Q ss_pred             ---CCCeEEEEECCCCCEEEE-EcCCc-EEEEEc
Q 047036          463 ---GSPITHVDVTYDGKWILG-TTDTY-LILICT  491 (634)
Q Consensus       463 ---~d~ItsVdfSpDGk~LlS-S~D~t-IrLWD~  491 (634)
                         .+...++.|||||++||. ..|.+ +..|.+
T Consensus       167 ~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence               123456889999999998 65544 666654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.73  E-value=1.3e-07  Score=94.33  Aligned_cols=85  Identities=9%  Similarity=0.082  Sum_probs=57.0

Q ss_pred             EEEECCCC-eEEEEECC---------CcEEEEeccccccccccccCCCCCeEEEEECCCCCE-E-EE-EcCCcEEEEEcc
Q 047036          426 CFASTGDG-SIVVGSLD---------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW-I-LG-TTDTYLILICTL  492 (634)
Q Consensus       426 sva~s~dG-~IASGS~D---------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~-L-lS-S~D~tIrLWD~~  492 (634)
                      .+++++++ .+++...+         ..|++||..+++ ...+++ ++..+.+|+|||||+. | ++ ..|++|.+||+.
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc-EeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            35667776 44443222         359999999874 555565 4567999999999984 3 34 468999999986


Q ss_pred             cccCCCCeeeeecCCCCCCCCCceeEeec
Q 047036          493 FSDKDGKTKTGFSGRMGNKIPAPRLLKLT  521 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh~~~~~p~pr~L~L~  521 (634)
                          +|+.+..+.-  +   ..|..|.+.
T Consensus       346 ----tgk~~~~i~~--g---~~P~~l~~~  365 (368)
T d1mdah_         346 ----SDQDQSSVEL--D---KGPESLSVQ  365 (368)
T ss_dssp             ----SCEEEEECCC--C---SCCCEEECC
T ss_pred             ----CCCEEEEEEC--C---CCCCEEEEe
Confidence                6887766652  2   235555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.70  E-value=4.7e-06  Score=80.98  Aligned_cols=241  Identities=9%  Similarity=0.157  Sum_probs=147.3

Q ss_pred             EEEeeeCCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036          258 SLTLGALDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV  335 (634)
Q Consensus       258 ~LavG~~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI  335 (634)
                      -+||...++-||+..  .+|.||.  .+|-    .+..+.......+..+.|....+.......++......     ..|
T Consensus        27 gvavd~dg~i~VaD~~n~rI~v~d--~~G~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~i   95 (279)
T d1q7fa_          27 GVAVNAQNDIIVADTNNHRIQIFD--KEGR----FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----HQI   95 (279)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEEC--TTSC----EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----CEE
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEe--CCCC----EEEEecccCCCcccccccccccccccccccceeccCCc-----ccc
Confidence            566665444555532  5777775  4441    12233221122566778888776665555565443322     578


Q ss_pred             EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036          336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG  415 (634)
Q Consensus       336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g  415 (634)
                      .+++. .|+.+..+....-.-+ ..+++.++        +.++++....+.+.++|+..  .++..+....         
T Consensus        96 ~~~~~-~g~~~~~~~~~~~~~p-~~~avd~~--------G~i~v~~~~~~~~~~~~~~g--~~~~~~g~~~---------  154 (279)
T d1q7fa_          96 QIYNQ-YGQFVRKFGATILQHP-RGVTVDNK--------GRIIVVECKVMRVIIFDQNG--NVLHKFGCSK---------  154 (279)
T ss_dssp             EEECT-TSCEEEEECTTTCSCE-EEEEECTT--------SCEEEEETTTTEEEEECTTS--CEEEEEECTT---------
T ss_pred             ccccc-cccceeecCCCccccc-ceeccccC--------CcEEEEeeccceeeEeccCC--ceeecccccc---------
Confidence            88886 5899888854332211 33466666        56777777778888888753  3444442110         


Q ss_pred             cccccCcceEEEEECCCCe-EEEEECCCcEEEEeccccccccccc--cCCCCCeEEEEECCCCCEEEE-EcC-CcEEEEE
Q 047036          416 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSMRQAKTAF--PGLGSPITHVDVTYDGKWILG-TTD-TYLILIC  490 (634)
Q Consensus       416 ~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~r~akt~L--~GH~d~ItsVdfSpDGk~LlS-S~D-~tIrLWD  490 (634)
                          .-.....+++.++|. +++....+.|++||..+ + ...++  +|+.....+|++.|+|+.+++ +.. ..|.+++
T Consensus       155 ----~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         155 ----HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             ----TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ----cccccceeeeccceeEEeeeccccceeeeecCC-c-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence                112345678888884 56677889999999765 2 33333  456667899999999999988 544 4688887


Q ss_pred             cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhh
Q 047036          491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQV  568 (634)
Q Consensus       491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v  568 (634)
                           .+|+.+..|......  +.|.-              +.+.+.        |   ..+|++.+..|.+|.+.++
T Consensus       229 -----~~G~~~~~~~~~~~~--~~p~~--------------vav~~d--------G---~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         229 -----QDGQLISALESKVKH--AQCFD--------------VALMDD--------G---SVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -----TTSCEEEEEEESSCC--SCEEE--------------EEEETT--------T---EEEEEETTTEEEEEECSCC
T ss_pred             -----CCCCEEEEEeCCCCC--CCEeE--------------EEEeCC--------C---cEEEEeCCCeEEEEEeeee
Confidence                 368877666543311  11222              222222        3   5677788888999988754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.60  E-value=1.3e-07  Score=100.91  Aligned_cols=200  Identities=12%  Similarity=0.047  Sum_probs=109.9

Q ss_pred             eeeCCCeEE-Ee---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEE--eCCcceEEecCCCCC----CC
Q 047036          261 LGALDNSFL-VS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLM--RGETNMMLMSPLKDG----KP  330 (634)
Q Consensus       261 vG~~D~sfv-v~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~--~~D~~mllsss~d~~----~~  330 (634)
                      .|.+|++|+ |.   ..+|-|+.....-.   ..++.+......+|.+|+|++..++  ......+-. +.+..    ..
T Consensus        78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k~---~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~-~~dg~~~~~~~  153 (441)
T d1qnia2          78 DGRYDGKYLFINDKANTRVARIRLDIMKT---DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ-PNDGTDFSLDN  153 (441)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEE---EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES-SCSSSCCCGGG
T ss_pred             cccCCCCEEEEEcCCCCEEEEEECCCCcE---eeEEecCCCCCccceEEeccCCEEEEEeccCCcccc-cCccccccccc
Confidence            344677766 43   25788887654321   1233443222337788887764321  111111111 00000    00


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-CeEEEEEcCC---------------
Q 047036          331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-NRLCQWDMRD---------------  394 (634)
Q Consensus       331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~tIklWD~R~---------------  394 (634)
                      .-..+..+|.++.+++.+.....+.   .-++|+|++        ..+++.+.+ +.+..+|..+               
T Consensus       154 ~~~~~~~iD~~t~~v~~qI~v~~~p---~~v~~spdG--------k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         154 SYTMFTAIDAETMDVAWQVIVDGNL---DNTDADYTG--------KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             EEEEEEEEETTTCSEEEEEEESSCC---CCEEECSSS--------SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             ccceEEeecCccceeeEEEecCCCc---cceEECCCC--------CEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence            0124567999999999988776653   345999994        456665543 2222222211               


Q ss_pred             ------------------------CCceEEecccCCCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEe
Q 047036          395 ------------------------RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYS  448 (634)
Q Consensus       395 ------------------------~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD  448 (634)
                                              ...++..+....+                -..++++||| + +|+|..+++|.+||
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks----------------PhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN----------------PHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS----------------CCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC----------------ccCceECCCCCEEEEeCCcCCcEEEEE
Confidence                                    1122222221111                1346889999 5 57789999999999


Q ss_pred             ccccccc-------cccc---cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          449 KTSMRQA-------KTAF---PGLGSPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       449 ~~t~r~a-------kt~L---~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      +..+.++       +..+   +..+-...+..|.++|.-+.| .-|+.|..|++
T Consensus       287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             eehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            8654311       0111   122233466799999987777 78999999996

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=1.5e-07  Score=93.69  Aligned_cols=126  Identities=9%  Similarity=-0.066  Sum_probs=83.6

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE----------eCCCeEEEEEcCCCCceEEec
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG----------LDDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG----------S~D~tIklWD~R~~~~~Vq~l  402 (634)
                      ..|++||..+|+++.+..+|...    .++|+||        |..|+..          +.|++|.+||+.+++ +++.+
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~----~~a~spD--------g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~-~~~~i  112 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS----LAVAGHS--------GSDFALASTSFARSAKGKRTDYVEVFDPVTFL-PIADI  112 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC----EEEECTT--------SSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-EEEEE
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC----cceECCC--------CCEEEEEcccCccccccccCCeEEEEECCCCc-Eeeee
Confidence            45888899999999999988753    4589999        4556554          458899999999865 35555


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccccccccccccCCCCC-------eEEEEECC
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSP-------ITHVDVTY  473 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~-------ItsVdfSp  473 (634)
                      ..+....        ......-..++++||| +|++++ .++.|++||+.+++ ....++.++.+       ...+.+++
T Consensus       113 ~~p~~~~--------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~  183 (368)
T d1mdah_         113 ELPDAPR--------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCFHIHPGAAATHYLGSC  183 (368)
T ss_dssp             EETTSCS--------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECSSCCCCEEEETTEEECCCC
T ss_pred             cCCccce--------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-EeEEeeccCcceEccCCCceEEEEcC
Confidence            4332211        0001111246899999 788776 57999999998864 44555544432       24456666


Q ss_pred             CCCEEEE
Q 047036          474 DGKWILG  480 (634)
Q Consensus       474 DGk~LlS  480 (634)
                      ||+.++.
T Consensus       184 Dg~~~~~  190 (368)
T d1mdah_         184 PASLAAS  190 (368)
T ss_dssp             TTSCEEE
T ss_pred             CCCEEEE
Confidence            6665554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.50  E-value=1.7e-07  Score=96.47  Aligned_cols=107  Identities=10%  Similarity=0.098  Sum_probs=81.1

Q ss_pred             EEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccc-cCcceEEEEECCCC-eEEEEE
Q 047036          362 DITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFS-RGTNFQCFASTGDG-SIVVGS  439 (634)
Q Consensus       362 sfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~-~~~~fssva~s~dG-~IASGS  439 (634)
                      .+.|+        +++++  ..|+.|.+||+.++... ..+..+           .+. ....+.++.+|||| +||.++
T Consensus        23 ~W~~d--------~~~~~--~~~~~~~~~~~~t~~~~-~~~~~~-----------~~~~~~~~i~~~~~SpDg~~i~~~~   80 (470)
T d2bgra1          23 RWISD--------HEYLY--KQENNILVFNAEYGNSS-VFLENS-----------TFDEFGHSINDYSISPDGQFILLEY   80 (470)
T ss_dssp             EECSS--------SEEEE--ESSSCEEEEETTTCCEE-EEECTT-----------TTTTSSSCCCEEEECTTSSEEEEEE
T ss_pred             EeCCC--------CEEEE--EcCCcEEEEECCCCCEE-EEEchh-----------hhhhccCccceeEECCCCCEEEEEE
Confidence            67776        45555  46889999999987642 233221           111 12346788999999 788875


Q ss_pred             C---------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          440 L---------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       440 ~---------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      .         ++.+.|||+.+++  ...+.+|.+.+..+.|||||++||...++.|.+|+..
T Consensus        81 ~~~~~~r~s~~~~~~l~d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~  140 (470)
T d2bgra1          81 NYVKQWRHSYTASYDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP  140 (470)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred             CCcceeeeccCceEEEEECCCCc--ccccccCCccccccccccCcceeeEeecccceEEECC
Confidence            3         6788999999853  4568889999999999999999999889999999865

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.41  E-value=3e-06  Score=90.09  Aligned_cols=201  Identities=9%  Similarity=0.067  Sum_probs=114.2

Q ss_pred             CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe-------
Q 047036          315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR-------  386 (634)
Q Consensus       315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t-------  386 (634)
                      .|++.|+.+....     ++|.+||+.|+++.+.+.- +...+  .-++|+|+++.      .+++.++.+..       
T Consensus        81 pDGr~lfV~d~~~-----~rVavIDl~t~k~~~ii~iP~g~gp--hgi~~spdg~t------~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          81 YDGKYLFINDKAN-----TRVARIRLDIMKTDKITHIPNVQAI--HGLRLQKVPKT------NYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             EEEEEEEEEETTT-----TEEEEEETTTTEEEEEEECTTCCCE--EEEEECCSSBC------CEEEEEECSCEESSCSSS
T ss_pred             CCCCEEEEEcCCC-----CEEEEEECCCCcEeeEEecCCCCCc--cceEEeccCCE------EEEEeccCCcccccCccc
Confidence            4555565543322     6899999999999988763 33333  45699999652      35555554432       


Q ss_pred             ----------EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC---------------
Q 047036          387 ----------LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL---------------  440 (634)
Q Consensus       387 ----------IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~---------------  440 (634)
                                +..+|+.+... +..+.-                ......++++++| ++++++.               
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v-~~qI~v----------------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~  210 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDV-AWQVIV----------------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND  210 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSE-EEEEEE----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS
T ss_pred             ccccccccceEEeecCcccee-eEEEec----------------CCCccceEECCCCCEEEEEecCCCceEEEeccCcce
Confidence                      34577776432 222210                0112334566666 4544443               


Q ss_pred             --------------------------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          441 --------------------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       441 --------------------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                                                ++.+.|++.... ....++|....| .+|++||||+||++  ..+++|.+||+.
T Consensus       211 ~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~-~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         211 RDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES-EFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             BCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC-SSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             EEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC-ceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCcEEEEEee
Confidence                                      456677765543 355567765554 88999999999865  579999999975


Q ss_pred             cccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhh
Q 047036          493 FSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVK  569 (634)
Q Consensus       493 ~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~  569 (634)
                      -      ....|.++..   + ...+.-.|+..      +--....|..   .|   ..+++ +-+..|+.|++..-+
T Consensus       289 k------~~~~~~~~~~---~-~~~~~~~~~~g------lgplh~~fd~---~g---~~yts~~~ds~v~kw~~~~~~  344 (441)
T d1qnia2         289 K------LDDLFEDKIE---L-RDTIVAEPELG------LGPLHTTFDG---RG---NAYTTLFIDSQVCKWNIADAI  344 (441)
T ss_dssp             G------HHHHTTTSSC---G-GGGEEECCBCC------SCEEEEEECS---SS---EEEEEETTTTEEEEEEHHHHH
T ss_pred             h------hhhHhhccCC---c-ceEEEeecccc------cCcccceecC---Cc---eEEEcccccceEEEeccchhh
Confidence            2      2233444432   0 11222222211      1111133542   13   34444 568999999997544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.90  E-value=0.0013  Score=63.23  Aligned_cols=149  Identities=11%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD  391 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD  391 (634)
                      ..+.+++++++....      ..+.++|.. |+++.++...........+++.++        +..+++....++|+++|
T Consensus       120 avd~~G~i~v~~~~~------~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~--------g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         120 TVDNKGRIIVVECKV------MRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK--------QEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             EECTTSCEEEEETTT------TEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS--------SEEEEEEGGGTEEEEEE
T ss_pred             ccccCCcEEEEeecc------ceeeEeccC-Cceeecccccccccccceeeeccc--------eeEEeeeccccceeeee
Confidence            344556666665543      468888865 888888754332212234467766        57888888899999999


Q ss_pred             cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEE--CCCcEEEEecccccccccccc--CCCCCeE
Q 047036          392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS--LDGKIRLYSKTSMRQAKTAFP--GLGSPIT  467 (634)
Q Consensus       392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS--~DGtIRLWD~~t~r~akt~L~--GH~d~It  467 (634)
                      ...  ..+.++. +.        +.    -..-..+|+.++|.|.++.  ..+.|++|+..+ + .+.++.  .......
T Consensus       185 ~~G--~~~~~~g-~~--------g~----~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~-~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         185 YEG--QYLRQIG-GE--------GI----TNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-Q-LISALESKVKHAQCF  247 (279)
T ss_dssp             TTC--CEEEEES-CT--------TT----SCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-C-EEEEEEESSCCSCEE
T ss_pred             cCC--ceeeeec-cc--------cc----ccCCcccccccCCeEEEEECCCCcEEEEECCCC-C-EEEEEeCCCCCCCEe
Confidence            863  3344442 11        10    1113578899999665553  345799999654 3 444443  2334578


Q ss_pred             EEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          468 HVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       468 sVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      +|++.|||+.+++..++.|++|...
T Consensus       248 ~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         248 DVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             EEEEETTTEEEEEETTTEEEEEECS
T ss_pred             EEEEeCCCcEEEEeCCCeEEEEEee
Confidence            9999999998777888999999865

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.75  E-value=0.011  Score=58.87  Aligned_cols=102  Identities=12%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             eEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEcCCCCceE--EecccCCCCccccccccccccCcceEEEEECCCC-e
Q 047036          359 TMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDMRDRSGIV--QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S  434 (634)
Q Consensus       359 ~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~R~~~~~V--q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~  434 (634)
                      ..+.|+||        |..++++ ....+|.+++....+.+.  ..+..             ......-..++|+|+| +
T Consensus       148 h~v~~sPd--------G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~-------------~~~g~gPr~i~f~pdg~~  206 (365)
T d1jofa_         148 HGMVFDPT--------ETYLYSADLTANKLWTHRKLASGEVELVGSVDA-------------PDPGDHPRWVAMHPTGNY  206 (365)
T ss_dssp             EEEEECTT--------SSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-------------SSTTCCEEEEEECTTSSE
T ss_pred             eEEEECCC--------CCEEEEeeCCCCEEEEEEccCCCceeeccceee-------------cCCCCceEEEEECCCCce
Confidence            35699999        4555555 446788888765443321  11110             0112234678999999 4


Q ss_pred             E-EEEECCCcEEEEecccccccc----cc---cc-----------CCCCCeEEEEECCCCCEEEEE
Q 047036          435 I-VVGSLDGKIRLYSKTSMRQAK----TA---FP-----------GLGSPITHVDVTYDGKWILGT  481 (634)
Q Consensus       435 I-ASGS~DGtIRLWD~~t~r~ak----t~---L~-----------GH~d~ItsVdfSpDGk~LlSS  481 (634)
                      + +++-.+++|.+|+........    ..   ++           .+......|.|||||++|.++
T Consensus       207 ~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             EEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            4 556689999999975431100    00   10           122335679999999999873

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.73  E-value=0.0024  Score=61.79  Aligned_cols=125  Identities=11%  Similarity=0.058  Sum_probs=85.9

Q ss_pred             eCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccccccc
Q 047036          339 DIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQF  418 (634)
Q Consensus       339 DleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y  418 (634)
                      ++...|++.+|-... .+  .-++++||        |+++++...+++|..||+....   ..+..              
T Consensus        14 ~~~~~~v~~~~p~~~-~~--e~iAv~pd--------G~l~vt~~~~~~I~~i~p~g~~---~~~~~--------------   65 (302)
T d2p4oa1          14 ELAPAKIITSFPVNT-FL--ENLASAPD--------GTIFVTNHEVGEIVSITPDGNQ---QIHAT--------------   65 (302)
T ss_dssp             CCCCEEEEEEECTTC-CE--EEEEECTT--------SCEEEEETTTTEEEEECTTCCE---EEEEE--------------
T ss_pred             cCCcccEEEECCCCC-Cc--CCEEECCC--------CCEEEEeCCCCEEEEEeCCCCE---EEEEc--------------
Confidence            445567777775433 22  23489999        7899999999999999987432   22211              


Q ss_pred             ccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036          419 SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILG-TTDTYLILICTL  492 (634)
Q Consensus       419 ~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~  492 (634)
                       ......+++++++| .++++..++.|.+|+..+.......+.  .......++++.++|+++++ +.++.|..+|..
T Consensus        66 -~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1          66 -VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             -CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             -CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence             12235789999999 466677888899888654321112221  24567899999999999988 677778777753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.51  E-value=0.0082  Score=58.83  Aligned_cols=148  Identities=14%  Similarity=0.155  Sum_probs=88.1

Q ss_pred             EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC----CeEE
Q 047036          313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD----NRLC  388 (634)
Q Consensus       313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D----~tIk  388 (634)
                      ++.+++++++....      +.|+.||..+++....+.......  .-++|+||        |.++++...+    ..|.
T Consensus        47 ~D~~G~Ly~~D~~~------g~I~ri~p~g~~~~~~~~~~~~~p--~gla~~~d--------G~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          47 FDRQGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKANP--AAIKIHKD--------GRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             ECTTSCEEEEETTT------CEEEEECTTTCCEEEEEECSSSSE--EEEEECTT--------SCEEEEECTTSSSCCEEE
T ss_pred             ECCCCCEEEEECCC------CEEEEEECCCCeEEEEEeCCCCCe--eEEEECCC--------CCEEEEecCCCccceeEE
Confidence            35666666666443      689999999887776665444432  34588888        5666655432    3455


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECC-------CcEEEEeccccccccccccC
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD-------GKIRLYSKTSMRQAKTAFPG  461 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D-------GtIRLWD~~t~r~akt~L~G  461 (634)
                      ..|.....  +..+..+..            ....+.-+++.++|.|..+...       +.|..++..+. .......+
T Consensus       111 ~~~~~~~~--~~~~~~~~~------------~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~  175 (319)
T d2dg1a1         111 AATENGDN--LQDIIEDLS------------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN  175 (319)
T ss_dssp             EECTTSCS--CEEEECSSS------------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE
T ss_pred             EEcCCCce--eeeeccCCC------------cccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeec
Confidence            55555432  122211111            1233566788999987776543       23555554432 12222222


Q ss_pred             CCCCeEEEEECCCCCEE-EE-EcCCcEEEEEcc
Q 047036          462 LGSPITHVDVTYDGKWI-LG-TTDTYLILICTL  492 (634)
Q Consensus       462 H~d~ItsVdfSpDGk~L-lS-S~D~tIrLWD~~  492 (634)
                      . ..-++|+|+|||++| ++ +..+.|..+|+.
T Consensus       176 ~-~~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         176 I-SVANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             E-SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             c-ceeeeeeeccccceEEEecccCCceEEEEEc
Confidence            2 235889999999976 55 778999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.0067  Score=57.32  Aligned_cols=152  Identities=9%  Similarity=0.014  Sum_probs=93.7

Q ss_pred             cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036          305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD  384 (634)
Q Consensus       305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D  384 (634)
                      ..|.++. .+.+++++++...+      +.|++++..+++.+....+....   .-+++.++        +.+.++-...
T Consensus        57 ~~p~gva-v~~~g~i~v~d~~~------~~i~~~~~~~~~~~~~~~~~~~p---~~iavd~~--------g~i~v~d~~~  118 (260)
T d1rwia_          57 YQPQGLA-VDGAGTVYVTDFNN------RVVTLAAGSNNQTVLPFDGLNYP---EGLAVDTQ--------GAVYVADRGN  118 (260)
T ss_dssp             CSCCCEE-ECTTCCEEEEETTT------EEEEECTTCSCCEECCCCSCCSE---EEEEECTT--------CCEEEEEGGG
T ss_pred             cCceEEE-EcCCCCEEEeeeee------ceeeeeeeccceeeeeeeeeeec---cccccccc--------ceeEeecccc
Confidence            3455543 34566666666553      57888887777776655543321   33477776        5677777777


Q ss_pred             CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEeccccccccccccCCC
Q 047036          385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~r~akt~L~GH~  463 (634)
                      +.+.+.+.......+....           +     -....+++++++|. +++....+.|..+|..+.. .........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~-----------~-----~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~  181 (260)
T d1rwia_         119 NRVVKLAAGSKTQTVLPFT-----------G-----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDI  181 (260)
T ss_dssp             TEEEEECTTCSSCEECCCC-----------S-----CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSC
T ss_pred             ccccccccccceeeeeeec-----------c-----cCCcceeeecCCCCEeeeccccccccccccccce-eeeeecccc
Confidence            7788888765322111110           0     01125678888885 4556777889999977532 222222334


Q ss_pred             CCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          464 SPITHVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      ....+|+|.++|+..++ ...+.|..++.
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence            45689999999998888 55677777763

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.37  E-value=0.012  Score=56.68  Aligned_cols=148  Identities=9%  Similarity=0.069  Sum_probs=88.0

Q ss_pred             eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036          314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR  393 (634)
Q Consensus       314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R  393 (634)
                      ..|+++++++..+      ++|+.||.. |+... +-.....+  ..++|+|+        |++++++..++.+.+|+..
T Consensus        36 ~pdG~l~vt~~~~------~~I~~i~p~-g~~~~-~~~~~~~~--~gla~~~d--------G~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          36 APDGTIFVTNHEV------GEIVSITPD-GNQQI-HATVEGKV--SGLAFTSN--------GDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CTTSCEEEEETTT------TEEEEECTT-CCEEE-EEECSSEE--EEEEECTT--------SCEEEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEeCCC------CEEEEEeCC-CCEEE-EEcCCCCc--ceEEEcCC--------CCeEEEecCCceEEEEEec
Confidence            4455666666654      689999976 55443 33333443  45699998        6889999999999999876


Q ss_pred             CCCceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEeccccccc---------cccccCCC
Q 047036          394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSMRQA---------KTAFPGLG  463 (634)
Q Consensus       394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~r~a---------kt~L~GH~  463 (634)
                      .....+..+..+.             .......+++.++|. +++-+.++.|..+|..+....         .....+..
T Consensus        98 ~~~~~~~~~~~~~-------------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          98 KSDGTVETLLTLP-------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             CTTSCEEEEEECT-------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ccccceeeccccC-------------CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence            5432223332111             112246678889995 556677888888886643100         01111222


Q ss_pred             CCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          464 SPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      ..+.+|+++.+.-|++.+..+.|..+++.
T Consensus       165 ~~~ngi~~~~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         165 PAANGLKRFGNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             CSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred             cccccccccCCceeeecCCCCeEEecccc
Confidence            34566666544333333778888887754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.33  E-value=0.044  Score=53.03  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=89.8

Q ss_pred             eeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036          309 KALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC  388 (634)
Q Consensus       309 ~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk  388 (634)
                      +.+++..+++++.++-..      ++|+.||+++|+. +.|.....   +..+++.++        +.++ .|+. +.|.
T Consensus        22 gp~wd~~~~~l~wvDi~~------~~I~r~d~~~g~~-~~~~~~~~---~~~i~~~~d--------g~l~-va~~-~gl~   81 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILE------RELHELHLASGRK-TVHALPFM---GSALAKISD--------SKQL-IASD-DGLF   81 (295)
T ss_dssp             EEEEETTTTEEEEEEGGG------TEEEEEETTTTEE-EEEECSSC---EEEEEEEET--------TEEE-EEET-TEEE
T ss_pred             CCeEECCCCEEEEEECCC------CEEEEEECCCCeE-EEEECCCC---cEEEEEecC--------CCEE-EEEe-CccE
Confidence            344455566666665443      6899999998865 45543322   244466665        4444 4554 5799


Q ss_pred             EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEEC-----CCcEEEEeccccccccccccCCC
Q 047036          389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL-----DGKIRLYSKTSMRQAKTAFPGLG  463 (634)
Q Consensus       389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~-----DGtIRLWD~~t~r~akt~L~GH~  463 (634)
                      ++|+.++.  +..+.....          ....+.+..+++.++|.|..++.     .+.-.||....++ ....+.++.
T Consensus        82 ~~d~~tg~--~~~l~~~~~----------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~~~  148 (295)
T d2ghsa1          82 LRDTATGV--LTLHAELES----------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADIS  148 (295)
T ss_dssp             EEETTTCC--EEEEECSST----------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEES
T ss_pred             Eeecccce--eeEEeeeec----------CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEEEeeccC
Confidence            99998764  233321110          01234567778899997776653     2344566654442 444444443


Q ss_pred             CCeEEEEECCCCCEEE-E-EcCCcEEEEEc
Q 047036          464 SPITHVDVTYDGKWIL-G-TTDTYLILICT  491 (634)
Q Consensus       464 d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~  491 (634)
                       .-+++++|||++.|. + |..+.|..++.
T Consensus       149 -~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1         149 -IPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             -SEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             -CcceeeecCCCceEEEeecccceeeEeee
Confidence             458999999999765 4 66778877775

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.24  E-value=0.014  Score=58.26  Aligned_cols=148  Identities=12%  Similarity=0.047  Sum_probs=80.4

Q ss_pred             CcEEEEeCC-CCcEEE--EEec--cCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCc-eEEecccC
Q 047036          333 PGVQQLDIE-TGKIVT--EWKF--EKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSG-IVQNMVKG  405 (634)
Q Consensus       333 ~TIrlWDle-TGK~V~--~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~-~Vq~l~gh  405 (634)
                      .+|++++.. +|++..  ....  .....  .-+.|+|+        ++++ +++-.+++|.+||...+.. .+......
T Consensus       167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gP--r~i~f~pd--------g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~  236 (365)
T d1jofa_         167 NKLWTHRKLASGEVELVGSVDAPDPGDHP--RWVAMHPT--------GNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCE--EEEEECTT--------SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CEEEEEEccCCCceeeccceeecCCCCce--EEEEECCC--------CceEEEeccCCCEEEEEEecCCCceEEEEeeee
Confidence            468888653 455432  2222  22232  23599999        4555 5555789999999875432 12221100


Q ss_pred             CCCccc---c-ccccccccCcceEEEEECCCC-eEEEEE-CCC-----cEEEEecccccc-----ccccccCCCCCeEEE
Q 047036          406 DSPVLH---W-TQGHQFSRGTNFQCFASTGDG-SIVVGS-LDG-----KIRLYSKTSMRQ-----AKTAFPGLGSPITHV  469 (634)
Q Consensus       406 ~s~V~~---~-~~g~~y~~~~~fssva~s~dG-~IASGS-~DG-----tIRLWD~~t~r~-----akt~L~GH~d~ItsV  469 (634)
                        +++.   . .....+.....-..++++|+| +|+++. .+.     .|-.|+......     .....+..+..-.+|
T Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i  314 (365)
T d1jofa_         237 --PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             --ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred             --ccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEE
Confidence              0000   0 000111122233567889999 666653 222     376776532100     111123345566889


Q ss_pred             EECC-CCCEEEE--EcCCcEEEEEcc
Q 047036          470 DVTY-DGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       470 dfSp-DGk~LlS--S~D~tIrLWD~~  492 (634)
                      +|+| +|+||+.  ..+++|.+|++.
T Consensus       315 ~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         315 SPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            9998 8999976  467999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.012  Score=55.56  Aligned_cols=146  Identities=12%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEE-EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036          311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT-EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ  389 (634)
Q Consensus       311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~-~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl  389 (634)
                      +..+.++++++....+      ..+.+.+........ ...+-. ..  .-++++|+        +.+.++...++.|..
T Consensus       103 iavd~~g~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~-~p--~~i~~~~~--------g~~~v~~~~~~~i~~  165 (260)
T d1rwia_         103 LAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFTGLN-DP--DGVAVDNS--------GNVYVTDTDNNRVVK  165 (260)
T ss_dssp             EEECTTCCEEEEEGGG------TEEEEECTTCSSCEECCCCSCC-SC--CEEEECTT--------CCEEEEEGGGTEEEE
T ss_pred             ccccccceeEeecccc------ccccccccccceeeeeeecccC-Cc--ceeeecCC--------CCEeeeccccccccc
Confidence            3445566666665443      357777765433211 112211 11  23477776        678888888999999


Q ss_pred             EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEE-ECCCcEEEEecccccccccccc-CCCCCeE
Q 047036          390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVG-SLDGKIRLYSKTSMRQAKTAFP-GLGSPIT  467 (634)
Q Consensus       390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASG-S~DGtIRLWD~~t~r~akt~L~-GH~d~It  467 (634)
                      +|+.....  ..+..           ..+   ..-..++++++|.|.++ ...+.|..++..+.  ..+.+. ..-....
T Consensus       166 ~d~~~~~~--~~~~~-----------~~~---~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~~P~  227 (260)
T d1rwia_         166 LEAESNNQ--VVLPF-----------TDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--TSTVLPFTGLNTPL  227 (260)
T ss_dssp             ECTTTCCE--EECCC-----------SSC---CSEEEEEECTTCCEEEEETTTTEEEEECTTCS--CCEECCCCSCCCEE
T ss_pred             ccccccee--eeeec-----------ccc---CCCccceeeeeeeeeeeecCCCEEEEEeCCCC--eEEEEccCCCCCeE
Confidence            99876432  22210           000   11256788999966554 45678888887553  223332 2224568


Q ss_pred             EEEECCCCCEEEE-EcCCcEEEEEc
Q 047036          468 HVDVTYDGKWILG-TTDTYLILICT  491 (634)
Q Consensus       468 sVdfSpDGk~LlS-S~D~tIrLWD~  491 (634)
                      +|+|++||..+++ ...+.|+.++.
T Consensus       228 ~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         228 AVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEeC
Confidence            9999999998888 67788877764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.14  E-value=0.048  Score=53.25  Aligned_cols=143  Identities=9%  Similarity=0.047  Sum_probs=83.9

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW  412 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~  412 (634)
                      +.|+.++.. |+......+ -...  .-++|+|+.+...   ..+.++-+..+.|..+|+...+.+ ....     +...
T Consensus       153 G~v~~~~~d-g~~~~~~~~-~~~p--NGi~~~~d~d~~~---~~lyv~d~~~~~i~~~d~~~~g~~-~~~~-----~~~~  219 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVDTA-FQFP--NGIAVRHMNDGRP---YQLIVAETPTKKLWSYDIKGPAKI-ENKK-----VWGH  219 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEE-ESSE--EEEEEEECTTSCE---EEEEEEETTTTEEEEEEEEETTEE-EEEE-----EEEE
T ss_pred             ceEEEEeec-CceeEeeCC-ccee--eeeEECCCCCcce---eEEEEEeecccceEEeeccCcccc-ceee-----EEEE
Confidence            467777765 665544332 2111  1247888743211   124556678899999997654332 1100     0000


Q ss_pred             ccccccccCcceEEEEECCCCeEEEE-ECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEE
Q 047036          413 TQGHQFSRGTNFQCFASTGDGSIVVG-SLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILI  489 (634)
Q Consensus       413 ~~g~~y~~~~~fssva~s~dG~IASG-S~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLW  489 (634)
                      ..+.   ....-..+++..+|.|.++ ...+.|+.||..+++ .+..+......+++|+|.|||+.|. + +..++|...
T Consensus       220 ~~~~---~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         220 IPGT---HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             CCCC---SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccc---ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            0000   0001245788899966544 467889999988753 5566665567889999999998664 4 456777777


Q ss_pred             Ecc
Q 047036          490 CTL  492 (634)
Q Consensus       490 D~~  492 (634)
                      ++.
T Consensus       296 ~~~  298 (314)
T d1pjxa_         296 EWQ  298 (314)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.90  E-value=0.1  Score=50.65  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=84.7

Q ss_pred             EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEE
Q 047036          312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQW  390 (634)
Q Consensus       312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklW  390 (634)
                      ..+.++++.++..........+.|+.++...+ .++.+...-...  .-++|+|+        ++.| ++-+..++|..+
T Consensus       136 ~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~p--nGia~s~d--------g~~lyvad~~~~~I~~~  204 (319)
T d2dg1a1         136 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVA--NGIALSTD--------EKVLWVTETTANRLHRI  204 (319)
T ss_dssp             EECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSE--EEEEECTT--------SSEEEEEEGGGTEEEEE
T ss_pred             eEEeccceeecccccccccCcceeEEEecccc-eeEEEeecccee--eeeeeccc--------cceEEEecccCCceEEE
Confidence            34556666665433211112346888887744 344332222211  23489998        4544 566778999999


Q ss_pred             EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEE-EECCCcEEEEeccccccccc--ccc----CCC
Q 047036          391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVV-GSLDGKIRLYSKTSMRQAKT--AFP----GLG  463 (634)
Q Consensus       391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IAS-GS~DGtIRLWD~~t~r~akt--~L~----GH~  463 (634)
                      |+.............   +     .........-..+++..+|.|.+ ....|.|+.||..+ + ...  .+|    ++.
T Consensus       205 d~~~~g~~~~~~~~~---~-----~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G-~-~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         205 ALEDDGVTIQPFGAT---I-----PYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-Y-PIGQILIPGRDEGHM  274 (319)
T ss_dssp             EECTTSSSEEEEEEE---E-----EEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-C-EEEEEECTTGGGTCS
T ss_pred             EEcCCCceeccccce---e-----eeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC-c-EEEEEeCCCcCCCcC
Confidence            987543222211100   0     00000001124578889996544 45789999999764 3 222  344    566


Q ss_pred             CCeEEEEECCCCCEEEE-Ec
Q 047036          464 SPITHVDVTYDGKWILG-TT  482 (634)
Q Consensus       464 d~ItsVdfSpDGk~LlS-S~  482 (634)
                      ..+++++|.|++..|+. +.
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEE
T ss_pred             ceeeeEEEeCCCCEEEEEcC
Confidence            67899999999988776 54

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.11  Score=47.16  Aligned_cols=65  Identities=15%  Similarity=0.091  Sum_probs=39.9

Q ss_pred             eEEEEECCCC-eEEEEEC-CCcE--EEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec---CCcEEEEEc
Q 047036          424 FQCFASTGDG-SIVVGSL-DGKI--RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT---DTYLILICT  491 (634)
Q Consensus       424 fssva~s~dG-~IASGS~-DGtI--RLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~---D~tIrLWD~  491 (634)
                      .....++++| .|+..+. .|..  .+.|..+.  ....+. +...+....|||||++||- +.   ...|.++++
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQVLS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--CEEECC-CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccc--cceEee-cCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            3455778888 5655544 4444  44454442  223333 4456788999999999985 43   345777775

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.21  Score=45.34  Aligned_cols=130  Identities=15%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V~~  411 (634)
                      ..+++.+..++... .+..+....  ....++|+        |..++..+. ++...++..............       
T Consensus        63 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~spd--------g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  124 (269)
T d2hqsa1          63 SALVIQTLANGAVR-QVASFPRHN--GAPAFSPD--------GSKLAFALSKTGSLNLYVMDLASGQIRQVTD-------  124 (269)
T ss_dssp             CEEEEEETTTCCEE-EEECCSSCE--EEEEECTT--------SSEEEEEECTTSSCEEEEEETTTCCEEECCC-------
T ss_pred             cceeeeecccCcee-EEeeeeccc--ccceecCC--------CCeeeEeeecCCccceeecccccccceeeee-------
Confidence            57899999877654 444444443  45689999        455555443 333333332221111111110       


Q ss_pred             cccccccccCcceEEEEECCCC--eEEEEECCCcEEEE--eccccccccccccCCCCCeEEEEECCCCCEEEE-EcC-Cc
Q 047036          412 WTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLY--SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD-TY  485 (634)
Q Consensus       412 ~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLW--D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D-~t  485 (634)
                              ..........+.++  .+++...+|...||  ++.+.  ....+..+........+||||++|+. +.+ +.
T Consensus       125 --------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         125 --------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             --------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             --------ccccccccccccccccceecccccCCceEeeeecccc--cceeeecccccccccccccccceeEEEeecCCc
Confidence                    01111223345554  45555566655544  44442  33455566677888999999999998 443 44


Q ss_pred             EEEEE
Q 047036          486 LILIC  490 (634)
Q Consensus       486 IrLWD  490 (634)
                      ..||-
T Consensus       195 ~~i~~  199 (269)
T d2hqsa1         195 QHIAK  199 (269)
T ss_dssp             EEEEE
T ss_pred             eeeeE
Confidence            44444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0058  Score=63.68  Aligned_cols=135  Identities=13%  Similarity=0.055  Sum_probs=79.3

Q ss_pred             CcEEEEeCCCCcEEEEEeccCC-CcceeEEEEecCCCCCCCCCCCEEEEE---------eCCCeEEEEEcCCCCceEEec
Q 047036          333 PGVQQLDIETGKIVTEWKFEKD-GTDITMRDITNDTKSSQLDPSESTFLG---------LDDNRLCQWDMRDRSGIVQNM  402 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~-~V~I~vvsfsPd~K~~q~~~g~~laSG---------S~D~tIklWD~R~~~~~Vq~l  402 (634)
                      +.|.+||+.+|+...-+..+.- .+.+....||||        +..++.+         |..+.+.++|+.++..  ..|
T Consensus        37 g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD--------~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~--~~l  106 (465)
T d1xfda1          37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD--------REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSL  106 (465)
T ss_dssp             SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT--------SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EEC
T ss_pred             CcEEEEECCCCCEEEEEcCccccccccceeEECCC--------CCeEEEEEcccceeEeeccccEEEEEccCCce--eec
Confidence            5799999999876433433221 112234478999        4555554         3456788999987642  333


Q ss_pred             ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc-cccCCCCCe--------------
Q 047036          403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPI--------------  466 (634)
Q Consensus       403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~I--------------  466 (634)
                      .....            ....+.-+.+|||| +||-.. ++.|.+.+..++. ..+ +-.|-...|              
T Consensus       107 ~~~~~------------~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~-~~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1         107 DPPEV------------SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             CCTTC------------CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             cCccC------------CccccceeeeccCCceEEEEe-cceEEEEecCCCc-eEEEecccCcceeeccccchhhhhhhc
Confidence            21000            01112234679999 677665 6788888876642 222 222222222              


Q ss_pred             ---EEEEECCCCCEEEE-Ec-CCcEEEEEc
Q 047036          467 ---THVDVTYDGKWILG-TT-DTYLILICT  491 (634)
Q Consensus       467 ---tsVdfSpDGk~LlS-S~-D~tIrLWD~  491 (634)
                         .++-|||||++||. .. ++.+.++.+
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             cccceEEECCCCCeEEEEEecccccceeec
Confidence               47889999999997 54 566666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.23  E-value=0.22  Score=48.29  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=76.7

Q ss_pred             CcEEEEeCCCCcEEEEEeccCC---CcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKD---GTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV  409 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~---~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V  409 (634)
                      ++|..||+.+|+..........   ..+ .-+.|.|+        +..++++...+.|.+.|+..+.  ...+....   
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P-~Gl~~~~d--------g~~l~vad~~~~i~~~~~~g~~--~~~~~~~~---  111 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNGYGGIP-AGCQCDRD--------ANQLFVADMRLGLLVVQTDGTF--EEIAKKDS---  111 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCE-EEEEECSS--------SSEEEEEETTTEEEEEETTSCE--EECCSBCT---
T ss_pred             CEEEEEECCCCcEEEEECCccccCCCcc-eeEEEeCC--------CCEEEEEECCCeEEEEeCCCcE--EEEEeccc---
Confidence            5799999999876543322211   111 22488887        5788888888889999987532  12221110   


Q ss_pred             cccccccccccCcceEEEEECCCCeEEEEEC----------------CCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036          410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSL----------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY  473 (634)
Q Consensus       410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS~----------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp  473 (634)
                          .++...   ....+++.++|.|.++..                .|.|..++..+ + ....+.+ -..-++|+|+|
T Consensus       112 ----~g~~~~---~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~-~~~~~~~-~~~pNGi~~~~  181 (314)
T d1pjxa_         112 ----EGRRMQ---GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-MIQVDTA-FQFPNGIAVRH  181 (314)
T ss_dssp             ----TSCBCB---CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C-EEEEEEE-ESSEEEEEEEE
T ss_pred             ----cccccC---CCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c-eeEeeCC-cceeeeeEECC
Confidence                111111   124467889997665532                23344444322 1 1122222 22347899999


Q ss_pred             CCC-----EEEE-EcCCcEEEEEcc
Q 047036          474 DGK-----WILG-TTDTYLILICTL  492 (634)
Q Consensus       474 DGk-----~LlS-S~D~tIrLWD~~  492 (634)
                      |+.     ..++ +..+.|..+|+.
T Consensus       182 d~d~~~~~lyv~d~~~~~i~~~d~~  206 (314)
T d1pjxa_         182 MNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             CTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCcceeEEEEEeecccceEEeecc
Confidence            875     3445 778888888864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.073  Score=54.99  Aligned_cols=159  Identities=9%  Similarity=0.023  Sum_probs=82.0

Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc-cCCCCccc
Q 047036          333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV-KGDSPVLH  411 (634)
Q Consensus       333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~-gh~s~V~~  411 (634)
                      +.+.++|+++|+...--........+....||||        |..||-. .++.|++.+...+.. ++... |-...+..
T Consensus        91 ~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--------G~~iafv-~~~nl~~~~~~~~~~-~~lt~~g~~~~i~n  160 (465)
T d1xfda1          91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--------GQQLIFI-FENNIYYCAHVGKQA-IRVVSTGKEGVIYN  160 (465)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--------TTCEEEE-ETTEEEEESSSSSCC-EEEECCCBTTTEEE
T ss_pred             ccEEEEEccCCceeeccCccCCccccceeeeccC--------CceEEEE-ecceEEEEecCCCce-EEEecccCcceeec
Confidence            5799999999986433222211111233489999        4455544 367899998876543 33322 11111100


Q ss_pred             cccccccccC--cceEEEEECCCC-eEEEEECC-Cc---------------------------------EEEEecccccc
Q 047036          412 WTQGHQFSRG--TNFQCFASTGDG-SIVVGSLD-GK---------------------------------IRLYSKTSMRQ  454 (634)
Q Consensus       412 ~~~g~~y~~~--~~fssva~s~dG-~IASGS~D-Gt---------------------------------IRLWD~~t~r~  454 (634)
                      -.....|...  ..-.++.+|||| +||....| ..                                 +.++|+.+...
T Consensus       161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~  240 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH  240 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred             cccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcE
Confidence            0000001000  012567789999 78887532 22                                 34555443211


Q ss_pred             cccccc-----CCCCCeEEEEECCCCCEEEEEc--C---CcEEEEEcccccCCCCeeeeec
Q 047036          455 AKTAFP-----GLGSPITHVDVTYDGKWILGTT--D---TYLILICTLFSDKDGKTKTGFS  505 (634)
Q Consensus       455 akt~L~-----GH~d~ItsVdfSpDGk~LlSS~--D---~tIrLWD~~~~~~~G~~~~gF~  505 (634)
                      ....++     ....-+..+.++|||++++...  +   ..|.++|+.    +|++...++
T Consensus       241 ~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~----tg~~~~~~~  297 (465)
T d1xfda1         241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----TGVCTKKHE  297 (465)
T ss_dssp             CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----TCCEEEEEE
T ss_pred             EEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC----CCcEEEEEE
Confidence            111111     1112367899999999887733  2   246666764    577665544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.56  E-value=0.76  Score=41.18  Aligned_cols=62  Identities=13%  Similarity=0.129  Sum_probs=37.4

Q ss_pred             EECCCCeEEEEECC--CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036          428 ASTGDGSIVVGSLD--GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL  492 (634)
Q Consensus       428 a~s~dG~IASGS~D--GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~  492 (634)
                      ...++..+.....+  ..|.++|+.+..  .+.|..+.+ .....|||||+.|+-+.++.|.++|+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~lt~~~~-~~~~~~SpDG~~I~f~~~~~l~~~d~~  261 (281)
T d1k32a2         198 VIVGHRIYFITDIDGFGQIYSTDLDGKD--LRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPD  261 (281)
T ss_dssp             EEETTEEEEEECTTSSCEEEEEETTSCS--CEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTT
T ss_pred             eeeccccceecccccccceEEEeCCCCc--eEEeecCCC-cccccCcCCCCEEEEEeCCEEEEEECC
Confidence            33444443433333  357777877642  333432222 223468999999988888889888864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.46  E-value=0.5  Score=49.15  Aligned_cols=147  Identities=11%  Similarity=0.062  Sum_probs=81.7

Q ss_pred             CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC----------
Q 047036          316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN----------  385 (634)
Q Consensus       316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~----------  385 (634)
                      |++.|+.+....     ..|.+-|+.+-|+.+...-.... .+.-....++.+      -.+++.++.+.          
T Consensus        98 DGrylFVNDkan-----~RVAvIdl~~fkt~kIi~iPn~~-~~HG~r~~~~p~------T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          98 DGRFLFMNDKAN-----TRVARVRCDVMKCDAILEIPNAK-GIHGLRPQKWPR------SNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEEEEEETTT-----TEEEEEETTTTEEEEEEECSSCC-SEEEEEECCSSB------CSEEEEEECSCEESSCSSSST
T ss_pred             ceeEEEEEcCCC-----ceEEEEECcceeeeEEEecCCCC-CCceeecccCCC------eEEEEccCccccccCCCCccc
Confidence            677777765543     68999999999986644332111 012223333322      25777777644          


Q ss_pred             --------eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC---------------
Q 047036          386 --------RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---------------  441 (634)
Q Consensus       386 --------tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---------------  441 (634)
                              ++-.+|..+.+-.-|...                 ..+...++++++| ++++.|.+               
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V-----------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~  228 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLV-----------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  228 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEE-----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             cchhhcceEEEEEecCCceEEEEeee-----------------CCChhccccCCCCCEEEEEeccccCCcchhhcccccc
Confidence                    256778775432112211                 1122345677777 56665543               


Q ss_pred             -----------------------CcEEEEecccc--ccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036          442 -----------------------GKIRLYSKTSM--RQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICTL  492 (634)
Q Consensus       442 -----------------------GtIRLWD~~t~--r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~  492 (634)
                                             +-+++=|....  ......+|- +....+|++||||+||++  ..+.++-++|++
T Consensus       229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             eEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                                   22334443221  001112332 122368999999999987  469999999975

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Enabled
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.44  E-value=0.63  Score=39.07  Aligned_cols=90  Identities=16%  Similarity=0.274  Sum_probs=60.2

Q ss_pred             ceeEEEEecCCCCCceEEeecc---ccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEe----cce-eeeeeccc
Q 047036           73 PVKLYLHIGGNTPKAKWVISDK---LTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKV----GSK-VRAKVSTE  144 (634)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----g~~-~~~~v~~~  144 (634)
                      .+|||.|=   .....|....-   .....+++-                 ..  .-.|.|++.    ++- +.+.|.++
T Consensus         9 rAkl~~~d---~~~~~Wk~rG~g~~~~~v~il~~-----------------~~--~~~~Rivmrr~~~~kv~~N~~i~~~   66 (111)
T d1evha_           9 RAAVMVYD---DANKKWVPAGGSTGFSRVHIYHH-----------------TG--NNTFRVVGRKIQDHQVVINCAIPKG   66 (111)
T ss_dssp             EEEEEEEE---TTTTEEEEGGGCCSCEEEEEEEE-----------------TT--TTEEEEEEEETTTCCEEEEEEECTT
T ss_pred             EEEEEEEe---CCCCcccccCCCceeEEEEEEEe-----------------CC--CCEEEEEEEEccCCeEEEEEeccCc
Confidence            47999994   22347987643   344566651                 11  123677762    222 89999999


Q ss_pred             cCcccccccceEEEEeC-cEEEEEcCChHHHHHHHHHHHHhH
Q 047036          145 MQLKMFGDQRRIDFVDK-GVWALKFFSDSEYRKFVTEFQDRL  185 (634)
Q Consensus       145 ~~~~~~~~~~~~~f~~~-~~w~lkF~~~~~~~~F~~~~~~~l  185 (634)
                      |++.- ....-..|... ..|+|||.+.++-..|.+.|.+|+
T Consensus        67 ~~y~~-~~~~~~~w~~~~~~fglrF~~~e~A~~F~~~v~~a~  107 (111)
T d1evha_          67 LKYNQ-ATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHAL  107 (111)
T ss_dssp             CCCBC-CSSSEEEEECSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cceec-CCCceEEEecCceEEEEEcCCHHHHHHHHHHHHHHH
Confidence            99862 22333344432 499999999999999999999987

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.42  E-value=3.9  Score=38.59  Aligned_cols=157  Identities=11%  Similarity=0.083  Sum_probs=87.9

Q ss_pred             eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---
Q 047036          310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---  384 (634)
Q Consensus       310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---  384 (634)
                      .+....++++++++.        .-|.++|..+|+...-...  ......+.-..+.|+        |.+.++....   
T Consensus        63 ~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--------G~iw~~~~~~~~~  126 (295)
T d2ghsa1          63 ALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--------GALWIGTMGRKAE  126 (295)
T ss_dssp             EEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--------SCEEEEEEETTCC
T ss_pred             EEEEecCCCEEEEEe--------CccEEeecccceeeEEeeeecCCCcccceeeEECCC--------CCEEEEecccccc
Confidence            455566777777753        2599999999986543322  111111222355665        5555544322   


Q ss_pred             -CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEecccc------c-c
Q 047036          385 -NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSM------R-Q  454 (634)
Q Consensus       385 -~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~------r-~  454 (634)
                       +.-.+|.+..+ .+...+.             .+.   .-..+++++++ . +++-+..+.|..|+....      + .
T Consensus       127 ~~~g~l~~~~~g-~~~~~~~-------------~~~---~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~  189 (295)
T d2ghsa1         127 TGAGSIYHVAKG-KVTKLFA-------------DIS---IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  189 (295)
T ss_dssp             TTCEEEEEEETT-EEEEEEE-------------EES---SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             ccceeEeeecCC-cEEEEee-------------ccC---CcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence             22334433332 2211111             000   12457888888 3 567788899999986321      0 0


Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036          455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF  504 (634)
Q Consensus       455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF  504 (634)
                      ....+++.....-++++..+|...++ -..+.|..+|.     +|+.+..+
T Consensus       190 ~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-----~G~~~~~i  235 (295)
T d2ghsa1         190 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DGNHIARY  235 (295)
T ss_dssp             EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TCCEEEEE
T ss_pred             EEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-----CCcEeeEe
Confidence            01123344455789999999998888 56778888883     57655433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.33  E-value=0.4  Score=49.92  Aligned_cols=133  Identities=17%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             EEEECCCC-e-EEEEECCCcEEEEecccccc----------ccccccCCCCCeEEEEECCCCCEEEEE--cCCcEEEEEc
Q 047036          426 CFASTGDG-S-IVVGSLDGKIRLYSKTSMRQ----------AKTAFPGLGSPITHVDVTYDGKWILGT--TDTYLILICT  491 (634)
Q Consensus       426 sva~s~dG-~-IASGS~DGtIRLWD~~t~r~----------akt~L~GH~d~ItsVdfSpDGk~LlSS--~D~tIrLWD~  491 (634)
                      .+.++||| + +++|..+.++-++|...+..          +...-+.++---.+-+|...|. .-+|  -|+.|.-|++
T Consensus       279 GV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-aytslfids~v~kw~~  357 (459)
T d1fwxa2         279 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEH
T ss_pred             ceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce-EEEEeeccceEEEEec
Confidence            35779999 5 56778999999999864321          1112234555668899999884 4455  5999999996


Q ss_pred             ccccCCCCeeeeecCCCCCCCCCceeEee--cCCCcccc--------CC----Ccccccccccccc-cCCCCceEEEEEc
Q 047036          492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKL--TPLDSHLA--------GT----DNKIHGGHFSWVT-ENGKQERHLVATV  556 (634)
Q Consensus       492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L--~Pe~~~~~--------g~----~i~Ft~a~Fs~~t-~~g~~E~~IvtSt  556 (634)
                      .      ..+..|.|...  .+..-++-+  .|+|.+..        |+    -.+|++++|-++- .--.++++|=-|.
T Consensus       358 ~------~~~~~~~~~~~--~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg  429 (459)
T d1fwxa2         358 E------DAIRAYAGEKV--DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  429 (459)
T ss_dssp             H------HHHHHHHTCSC--CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             c------hhhhhhccccC--CcceeccccccCCCCCccCcCCcCCCCCCEEEEecccccccccCCCCCCCccceEEEcCC
Confidence            3      12222333211  121112211  34443221        11    2478899998741 1123456666678


Q ss_pred             CCeEEEEeChh
Q 047036          557 GKFSVIWDFQQ  567 (634)
Q Consensus       557 g~~viiWdl~~  567 (634)
                      +++..|-|...
T Consensus       430 ~~m~l~~d~p~  440 (459)
T d1fwxa2         430 DKMVLVHDGPT  440 (459)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CeeEEEeccCC
Confidence            88888888763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.92  E-value=0.16  Score=45.88  Aligned_cols=48  Identities=17%  Similarity=0.034  Sum_probs=36.1

Q ss_pred             CCC--C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036          430 TGD--G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG  480 (634)
Q Consensus       430 s~d--G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS  480 (634)
                      +|+  | +||-.+ +|.|.+.|+.+++ + +.|..+...+.+..|||||++||-
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~-~-~~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGS-T-RKIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCC-E-EEEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCC-E-EEEecCCCcccCEEECCCCCEEEE
Confidence            566  7 666544 4678888998863 3 456666678899999999999985

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.37  E-value=0.97  Score=47.50  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             CCCCeEEEEECCCcEEEEecccccccc--cccc--CCCCCeEEEEECCCCC-EEEE
Q 047036          430 TGDGSIVVGSLDGKIRLYSKTSMRQAK--TAFP--GLGSPITHVDVTYDGK-WILG  480 (634)
Q Consensus       430 s~dG~IASGS~DGtIRLWD~~t~r~ak--t~L~--GH~d~ItsVdfSpDGk-~LlS  480 (634)
                      +.+|.|.+|+.||.+|.||..+++ .+  ..++  .++.||   .+..||+ ||+.
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe-~LW~~~~~~~~~~~P~---ty~~~GkQYv~v  537 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGE-KLWEAPTGTGVVAAPS---TYMVDGRQYVSV  537 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCE---EEEETTEEEEEE
T ss_pred             EcCCEEEEECCCCeEEEEECCCCc-EeEEEECCCCccccCE---EEEECCEEEEEE
Confidence            456788889999999999999986 33  2333  355564   4456897 4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.04  E-value=1.1  Score=42.73  Aligned_cols=118  Identities=15%  Similarity=0.117  Sum_probs=64.7

Q ss_pred             eeeEEeCCcceEEecCCCCCCCCC-----CcEEEEeCCCCcEEE--EEec-cCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036          309 KALLMRGETNMMLMSPLKDGKPQA-----PGVQQLDIETGKIVT--EWKF-EKDGTDITMRDITNDTKSSQLDPSESTFL  380 (634)
Q Consensus       309 ~~mL~~~D~~mllsss~d~~~~~~-----~TIrlWDleTGK~V~--~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laS  380 (634)
                      .+.+...++++++.++........     ..+.+||+.+++-..  .... |....  ....+.++        +.+++.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~--~~~~~~~~--------g~i~v~   92 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC--PGISMDGN--------GQIVVT   92 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS--CEEEECTT--------SCEEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccce--eEEEEecC--------CcEEEe
Confidence            334444567778877753221111     147899999987432  2222 22111  12366777        567888


Q ss_pred             EeCC-CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECC------CcEEEEeccc
Q 047036          381 GLDD-NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLD------GKIRLYSKTS  451 (634)
Q Consensus       381 GS~D-~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~D------GtIRLWD~~t  451 (634)
                      |+.+ +++.+||+.+..-  ..+..-..       .    .  ...+++..+||. ++.|+.+      +++.+||..+
T Consensus        93 Gg~~~~~~~~yd~~~~~w--~~~~~~~~-------~----r--~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          93 GGNDAKKTSLYDSSSDSW--IPGPDMQV-------A----R--GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             CSSSTTCEEEEEGGGTEE--EECCCCSS-------C----C--SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ecCCCcceeEecCccCcc--cccccccc-------c----c--cccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            8655 7999999987531  22210000       0    0  112445677884 5556543      4789999875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.13  E-value=1.4  Score=46.43  Aligned_cols=49  Identities=27%  Similarity=0.515  Sum_probs=33.7

Q ss_pred             EECCCCeEEEEECCCcEEEEecccccccc--cccc--CCCCCeEEEEECCCCC-EEEE
Q 047036          428 ASTGDGSIVVGSLDGKIRLYSKTSMRQAK--TAFP--GLGSPITHVDVTYDGK-WILG  480 (634)
Q Consensus       428 a~s~dG~IASGS~DGtIRLWD~~t~r~ak--t~L~--GH~d~ItsVdfSpDGk-~LlS  480 (634)
                      ..+.+|.|++|+.||.+|.+|..+++ .+  ..++  .++.||   .+..||+ ||+.
T Consensus       471 l~TagglVf~G~~dg~l~A~Da~tGe-~lW~~~l~~~~~a~P~---ty~~dGkqYi~v  524 (571)
T d2ad6a1         471 LYTKGGLVWYATLDGYLKALDNKDGK-ELWNFKMPSGGIGSPM---TYSFKGKQYIGS  524 (571)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCE---EEEETTEEEEEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCc-EEEEEECCCCceecce---EEEECCEEEEEE
Confidence            34567888899999999999999885 33  2333  344554   4455896 5544

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.11  E-value=1.3  Score=37.36  Aligned_cols=84  Identities=19%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             eeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEec---ce--eeeeeccccCcc
Q 047036           74 VKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVG---SK--VRAKVSTEMQLK  148 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g---~~--~~~~v~~~~~~~  148 (634)
                      ||||..    .|+..|+..-. -..+|++-                 .  ..-.|||.+..   .+  +...|.++|.+.
T Consensus        18 v~lY~~----~~~~~W~~~~t-G~v~~v~d-----------------~--~~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~   73 (114)
T d1mkea1          18 VQLYAA----DRNCMWSKKCS-GVACLVKD-----------------N--PQRSYFLRIFDIKDGKLLWEQELYNNFVYN   73 (114)
T ss_dssp             EEEEEE----ETTTEEEEEEE-EEEEEEEE-----------------T--TTTEEEEEEECSSSCSEEEEEECCSSCCCB
T ss_pred             EEEEEE----CCCCeEEECCc-eEEEEEEE-----------------C--CCCeEEEEEEECCCCeEEEEEEccCCcEEe
Confidence            899985    35678986443 23678771                 1  11247888743   22  999999999875


Q ss_pred             cccccceEEEE-e---CcEEEEEcCChHHHHHHHHHHHHhH
Q 047036          149 MFGDQRRIDFV-D---KGVWALKFFSDSEYRKFVTEFQDRL  185 (634)
Q Consensus       149 ~~~~~~~~~f~-~---~~~w~lkF~~~~~~~~F~~~~~~~l  185 (634)
                          +.+-.|. |   ++.+.|.|.+.++...|.++..+.+
T Consensus        74 ----k~~~~Fh~~~~~~~~~GL~F~~~~eA~~f~~~i~~~~  110 (114)
T d1mkea1          74 ----SPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLL  110 (114)
T ss_dssp             ----CSSSSEEEEECSSSEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ----ccCCeEEEEEcCCceEEEeeCCHHHHHHHHHHHHHHH
Confidence                2233344 2   4699999999999999999988765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.45  E-value=2  Score=45.08  Aligned_cols=48  Identities=17%  Similarity=0.240  Sum_probs=34.3

Q ss_pred             ECCCCeEEEEECCCcEEEEeccccccccc--ccc--CCCCCeEEEEECCCCC-EEEE
Q 047036          429 STGDGSIVVGSLDGKIRLYSKTSMRQAKT--AFP--GLGSPITHVDVTYDGK-WILG  480 (634)
Q Consensus       429 ~s~dG~IASGS~DGtIRLWD~~t~r~akt--~L~--GH~d~ItsVdfSpDGk-~LlS  480 (634)
                      .+.+|.|.+|+.||.+|.||..+++ .+-  .++  .++.|   +.+..||+ |||.
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe-~LW~~~~~~~~~~~P---~ty~~~G~qYv~i  546 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGK-ELWKFQTGSGIVSPP---ITWEQDGEQYLGV  546 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCC---EEEEETTEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCc-EeEEEECCCCccccC---EEEEECCEEEEEE
Confidence            3567788899999999999999986 442  233  45556   45678995 5554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=80.78  E-value=5.5  Score=41.33  Aligned_cols=48  Identities=19%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             ECCCCeEEEEECCCcEEEEeccccccccc--ccc--CCCCCeEEEEECCCCC-EEEE
Q 047036          429 STGDGSIVVGSLDGKIRLYSKTSMRQAKT--AFP--GLGSPITHVDVTYDGK-WILG  480 (634)
Q Consensus       429 ~s~dG~IASGS~DGtIRLWD~~t~r~akt--~L~--GH~d~ItsVdfSpDGk-~LlS  480 (634)
                      .+.+|.|.+|+.||.+|.||..+++ .+-  .++  .++.|   +.+..||+ ||+.
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe-~LW~~~l~~~~~~~P---~ty~~dGkqyv~v  518 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGE-ALWQFEAQSGIVAAP---MTFELAGRQYVAI  518 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCC---EEEEETTEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCc-EeEEEECCCCccccC---EEEEECCEEEEEE
Confidence            3567788899999999999999985 332  333  34455   34557896 5544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=80.74  E-value=3.4  Score=43.12  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=40.8

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036          332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG  397 (634)
Q Consensus       332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~  397 (634)
                      -++|.-||+.|||++-+.+......- .  .++-.        +.+||.|+.|+.++.+|.++++.
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~p~~g-g--~lsta--------gglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVSPWNG-G--TLTTA--------GNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCC-C--EEEET--------TTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccEEEeCCCCCceEeeecCCCCCCC-c--eEEEc--------CCEEEEECCCCeEEEEECCCCcE
Confidence            35799999999999988765542110 1  12222        57999999999999999999864