Citrus Sinensis ID: 047080

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
cccccHHHHHHHHHHHHcccccccEEEEEEcccEEEEEEcccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHccccEEEEEEEEcccEEEEEcccccccccccccHHHHHccccccEEEEEEEccccccccEEEEEccccccccccccccc
ccccHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEEcccccccccccccccccccccEEEEccccccccccccccHHHHHHHHccccEEEEEEccccccEEEEEccHHHHHHHcccHHHHHHcccccEEEEEEcccccccccEEEEcccccccccHHHHccc
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSgiltakkvpyvktmndsnsqngeaqecyfieldfpaaptadlnFSEVSLILKALGVSSVVDMKITTTCEDIFVVlpsaksvadlqpkfdemkkcpgrrgiivsglappesgfdfysrffcpkfgvnevITRWF
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFdemkkcpgrrgIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
***CGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKT**********AQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRW*
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVP****************ECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVITRWF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query165 2.2.26 [Sep-21-2011]
Q9KG32265 Uncharacterized isomerase yes no 0.818 0.509 0.337 7e-12
Q9DCG6288 Phenazine biosynthesis-li yes no 0.824 0.472 0.317 1e-11
Q9CXN7288 Phenazine biosynthesis-li no no 0.824 0.472 0.317 2e-10
Q68G31288 Phenazine biosynthesis-li yes no 0.830 0.475 0.325 3e-10
Q9HY42261 Uncharacterized isomerase yes no 0.787 0.498 0.331 4e-10
Q9I073259 Uncharacterized isomerase no no 0.775 0.494 0.339 5e-10
Q9A3I3275 Uncharacterized isomerase yes no 0.8 0.48 0.319 4e-09
P30039288 Phenazine biosynthesis-li no no 0.842 0.482 0.305 8e-09
Q2HJF4288 Phenazine biosynthesis-li yes no 0.842 0.482 0.299 1e-08
Q5RDZ1288 Phenazine biosynthesis-li yes no 0.842 0.482 0.293 1e-07
>sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0283 PE=3 SV=1 Back     alignment and function desciption
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 25/160 (15%)

Query: 1   MELCGHATLAAAHTLFSTDLVNSNT-VEFATLSGILTAKKVPYVKTMNDSNSQNGEAQEC 59
           ++LCGHATLA+AH L+  D +++   + F T SGILTA             S+ GE    
Sbjct: 69  VDLCGHATLASAHILWELDHISAEQPITFYTKSGILTA-------------SKRGE---- 111

Query: 60  YFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPK 119
            +IELDFP+      N     LI   LG+     + +     D  + + S + + +L P 
Sbjct: 112 -WIELDFPSEQPKQENVYPNELI-DGLGIQP---LYVGRNRFDYLIEIDSEQRLKELNPN 166

Query: 120 FDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
           F  +++    RGIIV+  +   + +DF SR F P  GVNE
Sbjct: 167 FSLLEQI-DTRGIIVTSKS-TSTEYDFISRCFFPAVGVNE 204

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)
EC: 5EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q9DCG6|PBLD1_MOUSE Phenazine biosynthesis-like domain-containing protein 1 OS=Mus musculus GN=Pbld1 PE=2 SV=2 Back     alignment and function description
>sp|Q9CXN7|PBLD2_MOUSE Phenazine biosynthesis-like domain-containing protein 2 OS=Mus musculus GN=Pbld2 PE=2 SV=1 Back     alignment and function description
>sp|Q68G31|PBLD_RAT Phenazine biosynthesis-like domain-containing protein OS=Rattus norvegicus GN=Pbld PE=2 SV=1 Back     alignment and function description
>sp|Q9HY42|Y3578_PSEAE Uncharacterized isomerase PA3578 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3578 PE=3 SV=1 Back     alignment and function description
>sp|Q9I073|Y2770_PSEAE Uncharacterized isomerase PA2770 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2770 PE=3 SV=1 Back     alignment and function description
>sp|Q9A3I3|YX21_CAUCR Uncharacterized isomerase CC_3221 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=CC_3221 PE=3 SV=1 Back     alignment and function description
>sp|P30039|PBLD_HUMAN Phenazine biosynthesis-like domain-containing protein OS=Homo sapiens GN=PBLD PE=1 SV=2 Back     alignment and function description
>sp|Q2HJF4|PBLD_BOVIN Phenazine biosynthesis-like domain-containing protein OS=Bos taurus GN=PBLD PE=2 SV=1 Back     alignment and function description
>sp|Q5RDZ1|PBLD_PONAB Phenazine biosynthesis-like domain-containing protein OS=Pongo abelii GN=PBLD PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
255559496 489 phenazine biosynthesis protein, putative 0.957 0.323 0.616 8e-52
224109124 295 predicted protein [Populus trichocarpa] 0.933 0.522 0.616 7e-47
449436561 494 PREDICTED: uncharacterized isomerase BH0 0.963 0.321 0.592 2e-46
449491555 494 PREDICTED: uncharacterized isomerase BH0 0.963 0.321 0.592 2e-46
449462322 310 PREDICTED: uncharacterized isomerase BH0 0.933 0.496 0.602 8e-46
449525035 309 PREDICTED: uncharacterized isomerase BH0 0.933 0.498 0.6 1e-45
356500212 307 PREDICTED: uncharacterized isomerase BH0 0.957 0.514 0.587 7e-45
356541960232 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.957 0.681 0.549 2e-44
359479805 536 PREDICTED: uncharacterized protein LOC10 0.951 0.292 0.553 3e-44
296086726 303 unnamed protein product [Vitis vinifera] 0.951 0.518 0.553 3e-44
>gi|255559496|ref|XP_002520768.1| phenazine biosynthesis protein, putative [Ricinus communis] gi|223540153|gb|EEF41730.1| phenazine biosynthesis protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 130/159 (81%), Gaps = 1/159 (0%)

Query: 1   MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
           ++LCGHATLAA+HT+FS  LVNS+ +EF TLSGILTAKKV  +   + S+ QNGEA E +
Sbjct: 269 VKLCGHATLAASHTIFSNGLVNSDIIEFDTLSGILTAKKVSEISKTDVSSIQNGEANELF 328

Query: 61  FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKF 120
            IEL+FP   + + N  +++ I KAL  +S++D++ TTT +D+FVVLPSAK+V++LQP+F
Sbjct: 329 LIELNFPTVLSTEFNSVDLAPISKALNGASIIDIRRTTTADDLFVVLPSAKAVSELQPQF 388

Query: 121 DEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
           D++ KCPG RGIIVSG+APPESGFDFYSRFFCPK+G+NE
Sbjct: 389 DDILKCPG-RGIIVSGVAPPESGFDFYSRFFCPKYGINE 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109124|ref|XP_002315091.1| predicted protein [Populus trichocarpa] gi|222864131|gb|EEF01262.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436561|ref|XP_004136061.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449491555|ref|XP_004158935.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462322|ref|XP_004148890.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449525035|ref|XP_004169526.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500212|ref|XP_003518927.1| PREDICTED: uncharacterized isomerase BH0283-like [Glycine max] Back     alignment and taxonomy information
>gi|356541960|ref|XP_003539440.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized isomerase BH0283-like [Glycine max] Back     alignment and taxonomy information
>gi|359479805|ref|XP_002276833.2| PREDICTED: uncharacterized protein LOC100254487 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086726|emb|CBI32361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
TAIR|locus:2140265313 AT4G02860 [Arabidopsis thalian 0.927 0.488 0.509 2.4e-35
TAIR|locus:2014485286 AT1G03210 [Arabidopsis thalian 0.878 0.506 0.490 6e-32
TAIR|locus:2140250306 AT4G02850 [Arabidopsis thalian 0.890 0.480 0.426 2.5e-26
MGI|MGI:1915621288 Pbld1 "phenazine biosynthesis- 0.842 0.482 0.317 1.8e-10
RGD|621263288 Pbld1 "phenazine biosynthesis- 0.836 0.479 0.345 8.7e-10
TIGR_CMR|CPS_3143260 CPS_3143 "phenazine biosynthes 0.527 0.334 0.291 1.4e-09
MGI|MGI:1914557288 Pbld2 "phenazine biosynthesis- 0.593 0.340 0.314 9.9e-09
UNIPROTKB|I3LTZ8282 PBLD "Uncharacterized protein" 0.836 0.489 0.327 2.3e-08
UNIPROTKB|J9P7Z1316 PBLD "Uncharacterized protein" 0.842 0.439 0.317 2.4e-08
UNIPROTKB|C9JIM0280 PBLD "MAWD binding protein, is 0.836 0.492 0.315 3e-08
TAIR|locus:2140265 AT4G02860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 82/161 (50%), Positives = 110/161 (68%)

Query:     1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
             ++LCGHATLA+AH LFS  LV+S+ VEF T SGILTAK+V     ++D   + G     +
Sbjct:    96 VDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILTAKRVSDTSELSDGEVKGGT----F 151

Query:    61 FIELDFPAAPTADLNFSEVS--LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQP 118
              IEL+FP   T D+N S+VS  +I KAL  +++VD+K T T  +I VVLPS +SV +LQP
Sbjct:   152 LIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKATAT-NNILVVLPSKESVTELQP 210

Query:   119 KFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
             + D++ KCP   GIIV+      S +DFYSR+F PKFGV+E
Sbjct:   211 RMDDILKCPCD-GIIVTAAGSTGSSYDFYSRYFAPKFGVDE 250
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2014485 AT1G03210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140250 AT4G02850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1915621 Pbld1 "phenazine biosynthesis-like protein domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621263 Pbld1 "phenazine biosynthesis-like protein domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3143 CPS_3143 "phenazine biosynthesis protein, PhzF family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
MGI|MGI:1914557 Pbld2 "phenazine biosynthesis-like protein domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTZ8 PBLD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7Z1 PBLD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C9JIM0 PBLD "MAWD binding protein, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
pfam02567280 pfam02567, PhzC-PhzF, Phenazine biosynthesis-like 7e-32
COG0384291 COG0384, COG0384, Predicted epimerase, PhzC/PhzF h 2e-16
PRK10281299 PRK10281, PRK10281, hypothetical protein; Provisio 6e-05
>gnl|CDD|217109 pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein Back     alignment and domain information 
 Score =  114 bits (288), Expect = 7e-32
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 1   MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
           +  CGHATLA AH LF      + T+E  TL+GI+  K V                 E  
Sbjct: 64  VPFCGHATLATAHALFEEGGNGNKTLELETLAGIVPVKLVEGDGG-----------AEG- 111

Query: 61  FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKI---TTTCEDIFVVLPSAKSVADLQ 117
            IE++FP      ++  + +L+L  +G++    + I   +T    +FV L S +++A L 
Sbjct: 112 AIEMNFPEFDLPAVSREDDALLLAGIGLAFHEALPIAVKSTGLWHVFVPLSSLEALAALD 171

Query: 118 PKFD-EMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
           P  D  +  CP   G+IV   A   S  D+++R F P  G+ E
Sbjct: 172 PDLDAAIADCP-DDGVIVGPAASAGSPRDYHARMFAPALGIVE 213

PhzC/PhzF is involved in dimerisation of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains an uncharacterized protein Rv2715 from Mycobacterium tuberculosis, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesised to be active site residues (Bateman A pers obs). Length = 280
>gnl|CDD|223461 COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only] Back     alignment and domain information
>gnl|CDD|182354 PRK10281, PRK10281, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
PRK10281299 hypothetical protein; Provisional 100.0
COG0384291 Predicted epimerase, PhzC/PhzF homolog [General fu 100.0
KOG3033286 consensus Predicted PhzC/PhzF-type epimerase [Gene 99.97
PF02567281 PhzC-PhzF: Phenazine biosynthesis-like protein; In 99.96
TIGR00654297 PhzF_family phenazine biosynthesis protein PhzF fa 99.95
PRK00450274 dapF diaminopimelate epimerase; Provisional 99.89
TIGR00652268 DapF diaminopimelate epimerase. 99.7
PRK13577281 diaminopimelate epimerase; Provisional 99.48
PLN02536267 diaminopimelate epimerase 98.74
PRK13971333 hydroxyproline-2-epimerase; Provisional 98.59
PRK13970311 hydroxyproline-2-epimerase; Provisional 98.02
COG0253272 DapF Diaminopimelate epimerase [Amino acid transpo 97.96
PRK13969334 proline racemase; Provisional 97.84
PF05544325 Pro_racemase: Proline racemase; InterPro: IPR00879 97.76
COG3938341 Proline racemase [Amino acid transport and metabol 97.39
PF01678121 DAP_epimerase: Diaminopimelate epimerase; InterPro 91.05
COG0253272 DapF Diaminopimelate epimerase [Amino acid transpo 82.79
>PRK10281 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.9e-33  Score=229.25  Aligned_cols=149  Identities=22%  Similarity=0.289  Sum_probs=120.6

Q ss_pred             CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCC-CCccH
Q 047080            1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADL-NFSEV   79 (165)
Q Consensus         1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~-~~~~~   79 (165)
                      |||||||||||+|+|++.+....++++|+|++|.|+|+++.          .+    +.++++|.+|.+.+... ...+.
T Consensus        71 v~fcGHaTlaa~~~L~~~~~~~~~~~~~~t~~G~v~v~~~~----------~~----~~~~~~~~~~~p~~~~~~~~~~~  136 (299)
T PRK10281         71 VPICGHATVAAHYVRATVLGLGNCTVWQTTLAGILPVDIEK----------EN----DDYRISMTQGTPEFEPPLEGETR  136 (299)
T ss_pred             cccCCcHHHHHHHHHHHhCCCCCCcEEEEcCceEEEEEEEe----------cC----CeEEEEEecCCCcccCCCCccCH
Confidence            79999999999999998876666789999999999999963          12    24457788876644332 22235


Q ss_pred             HHHHHHhCCCceeeE-------EEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC---cceEEEecCCCCCCccEEee
Q 047080           80 SLILKALGVSSVVDM-------KITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR---RGIIVSGLAPPESGFDFYSR  149 (165)
Q Consensus        80 ~~l~~algl~~~~~i-------~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~---~gv~v~~~~~~~~~~~~~~R  149 (165)
                      ++++++||++. .++       .+++|.++++|+|+|.++|.+++||+++|.+++++   .|+++|+..+.+.+.+|++|
T Consensus       137 ~~l~~~lgl~~-~~i~~~~p~~~~~~G~~~liv~l~~~~~l~~~~pd~~~l~~l~~~~~~~g~~v~~~~~~~~~~~~~~R  215 (299)
T PRK10281        137 AAIINALGLTE-DDILPGLPIQVASTGHSKVMIPLKPEVDLDALSPNLAALTAISKQIGCNGFFPFQIRPGKNEILTDGR  215 (299)
T ss_pred             HHHHHHhCCCh-HHcCcCCCcEEEecCCceEEEEeCCHHHHHhCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCceEEEe
Confidence            78999999876 343       26899999999999999999999999999999864   37888888654345679999


Q ss_pred             ecCCCCCCCCcccCC
Q 047080          150 FFCPKFGVNEVITRW  164 (165)
Q Consensus       150 ~FaP~~Gi~EDpaTg  164 (165)
                      ||+|++||+||||||
T Consensus       216 ~FaP~~Gi~EDPaTG  230 (299)
T PRK10281        216 MFAPAIGIVEDPVTG  230 (299)
T ss_pred             eCCCCCCCccCcccc
Confidence            999999999999999

>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only] Back     alignment and domain information
>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only] Back     alignment and domain information
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens) Back     alignment and domain information
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family Back     alignment and domain information
>PRK00450 dapF diaminopimelate epimerase; Provisional Back     alignment and domain information
>TIGR00652 DapF diaminopimelate epimerase Back     alignment and domain information
>PRK13577 diaminopimelate epimerase; Provisional Back     alignment and domain information
>PLN02536 diaminopimelate epimerase Back     alignment and domain information
>PRK13971 hydroxyproline-2-epimerase; Provisional Back     alignment and domain information
>PRK13970 hydroxyproline-2-epimerase; Provisional Back     alignment and domain information
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13969 proline racemase; Provisional Back     alignment and domain information
>PF05544 Pro_racemase: Proline racemase; InterPro: IPR008794 This family consists of proline racemase (5 Back     alignment and domain information
>COG3938 Proline racemase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
4dun_A263 1.76a X-Ray Crystal Structure Of A Putative Phenazi 6e-09
1s7j_A262 Crystal Structure Of Phenazine Biosynthesis Protein 2e-08
>pdb|4DUN|A Chain A, 1.76a X-Ray Crystal Structure Of A Putative Phenazine Biosynthesis PhzcPHZF PROTEIN FROM CLOSTRIDIUM DIFFICILE (STRAIN 630) Length = 263 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 27/162 (16%)
Query: 1   MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
           ++LCGHATLAAA+ + +   VN   ++F T SG L               ++NG   E  
Sbjct: 69  IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEV-------------TRNGNLYEMI 115
Query: 61  FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKF 120
           F E+  P          E+ L  +   +   V   + ++  D+ ++L S + V + +P +
Sbjct: 116 FPEI-MPI---------EIELSPQQANLIGCVPSDVYSS-RDLILLLNSEQEVINYKPNY 164
Query: 121 DEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVIT 162
            +++K     GII++      S  DF SR+FCP+    + +T
Sbjct: 165 AQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELDSEDPVT 203
>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf Family (Enterococcus Faecalis) Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1ym5_A300 YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i 5e-33
1s7j_A262 Phenazine biosynthesis protein PHZF family; bacter 1e-32
4dun_A263 Putative phenazine biosynthesis PHZC/PHZF protein; 3e-32
3edn_A299 Phenazine biosynthesis protein, PHZF family; diami 5e-28
1qya_A307 ORFB, hypothetical protein YDDE; putative phenazin 1e-26
1xub_A298 Phenazine biosynthesis protein PHZF; biosynthetic 7e-26
1u0k_A288 Gene product PA4716; sctructural genomics, MCSG, p 2e-12
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Length = 300 Back     alignment and structure
 Score =  117 bits (296), Expect = 5e-33
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 24/165 (14%)

Query: 1   MELCGHATLAAAHTLFSTDLV-NSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQEC 59
           +   GH T+ +            + ++      G +                 N      
Sbjct: 77  LPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITI-------------NEG---- 119

Query: 60  YFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKIT-TTCEDIFVVLPSAKSVADLQP 118
             I    P A    ++   ++   KA+G+  +    +  T  E I  ++  A++  +  P
Sbjct: 120 -LISFKAPMADYESISSEMIADYEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANP 178

Query: 119 KFDEMKKCPGR---RGIIVSGLA-PPESGFDFYSRFFCPKFGVNE 159
            F  +     +    GII++G          +  R F P   V E
Sbjct: 179 NFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYE 223
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2 Length = 262 Back     alignment and structure
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile} Length = 263 Back     alignment and structure
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Length = 299 Back     alignment and structure
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Length = 307 Back     alignment and structure
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Length = 298 Back     alignment and structure
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2 Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
4dun_A263 Putative phenazine biosynthesis PHZC/PHZF protein; 99.97
3edn_A299 Phenazine biosynthesis protein, PHZF family; diami 99.94
1ym5_A300 YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i 99.94
1s7j_A262 Phenazine biosynthesis protein PHZF family; bacter 99.93
1xub_A298 Phenazine biosynthesis protein PHZF; biosynthetic 99.93
1qya_A307 ORFB, hypothetical protein YDDE; putative phenazin 99.93
1u0k_A288 Gene product PA4716; sctructural genomics, MCSG, p 99.87
2gke_A274 DAP epimerase, diaminopimelate epimerase; enzyme-i 99.85
2otn_A308 Diaminopimelate epimerase; DAP, lysine ME lanthion 99.8
2azp_A318 Hypothetical protein PA1268; PA1268,APC5861,sulfur 99.76
3fve_A290 DAP epimerase, diaminopimelate epimerase; alpha/be 99.34
1w61_A 414 B-cell mitogen; racemase, racemase pyridoxal phosp 99.27
1tm0_A350 Proline racemase; structural genomics, alpha-beta 99.25
3ejx_A317 DAP epimerase, diaminopimelate epimerase, chloropl 98.47
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile} Back     alignment and structure
Probab=99.97  E-value=5.1e-31  Score=212.59  Aligned_cols=137  Identities=29%  Similarity=0.484  Sum_probs=117.4

Q ss_pred             CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080            1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS   80 (165)
Q Consensus         1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~   80 (165)
                      +|||||||+|++++|++.+....++++|+|++|.|+|++..                +.  ++|++|.+.+.+..  ..+
T Consensus        69 v~~CGHatl~~a~~l~~~~~~~~~~~~~et~aG~l~v~~~~----------------~~--i~m~~p~~~~~~~~--~~~  128 (263)
T 4dun_A           69 IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNG----------------NL--YEMIFPEIMPIEIE--LSP  128 (263)
T ss_dssp             ESCCHHHHHHHHHHHHHHTSTTCSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECC--CCH
T ss_pred             eccCCcHHHHHHHHHHHhcCCCCCeEEEEeCCeEEEEEEeC----------------CE--EEEeCCCCCccCCC--CHH
Confidence            58999999999999999876556789999999999999873                34  78888887776654  346


Q ss_pred             HHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCCCCCCc
Q 047080           81 LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEV  160 (165)
Q Consensus        81 ~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~Gi~ED  160 (165)
                      +++++||+.+ .++.  +| ++++|+|+|.++|++++||++++.+++...|+++|+..   .+.+|++|+|+|+.| +||
T Consensus       129 ~l~~aLg~~~-~~v~--~g-~~~~v~l~~~~~l~~l~pd~~~l~~l~~~~gv~v~~~~---~~~d~~~R~FaP~~G-~ED  200 (263)
T 4dun_A          129 QQANLIGCVP-SDVY--SS-RDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELD-SED  200 (263)
T ss_dssp             HHHHHSSSCC-SEEE--ES-SSEEEECSCHHHHHHCCCCHHHHTTCTTCSCEEEEEEC---SSSSEEEEEEETTTT-EEE
T ss_pred             HHHHHcCCCH-HHeE--cC-CcEEEEECCHHHHHhCCCCHHHHHHhcCCceEEEEecC---CCceEEEEeecCCCC-CCC
Confidence            8999999987 6663  35 47999999999999999999999999766799999874   358999999999999 999


Q ss_pred             ccCCC
Q 047080          161 ITRWF  165 (165)
Q Consensus       161 paTg~  165 (165)
                      ||||-
T Consensus       201 PvTGS  205 (263)
T 4dun_A          201 PVTGS  205 (263)
T ss_dssp             SCCST
T ss_pred             cccch
Confidence            99993
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Back     alignment and structure
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Back     alignment and structure
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2 Back     alignment and structure
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Back     alignment and structure
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Back     alignment and structure
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2 Back     alignment and structure
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A Back     alignment and structure
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str} Back     alignment and structure
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa} Back     alignment and structure
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A Back     alignment and structure
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3 Back     alignment and structure
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 165
d1s7ja_260 d.21.1.2 (A:) Hypothetical protein EF0119 {Enteroc 7e-07
d1qy9a2168 d.21.1.2 (A:130-297) Hypothetical protein YddE {Es 3e-06
d1qy9a1127 d.21.1.2 (A:3-129) Hypothetical protein YddE {Esch 6e-06
d1xuba1128 d.21.1.2 (A:1-128) Phenazine biosynthesis protein 9e-06
d1u0ka1129 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Ps 4e-04
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]} Length = 260 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein EF0119
species: Enterococcus faecalis [TaxId: 1351]

 Score = 45.3 bits (106), Expect = 7e-07
 Identities = 40/162 (24%), Positives = 54/162 (33%), Gaps = 27/162 (16%)

Query: 1   MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
           ++LCGHATLA A  LF+   V   T+ F + SG L   K      ++             
Sbjct: 68  IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILPERIPILP 127

Query: 61  FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKF 120
             E                                      D+F VL   ++VA + P F
Sbjct: 128 EYEAALGTKIYEA------------------------YLGRDLFFVLKDEETVAKITPDF 163

Query: 121 DEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVIT 162
             +K      G+IV          DF SR F PK  +NE   
Sbjct: 164 SALKALDLGVGVIV---TASGDSVDFVSRTFFPKLRINEDPV 202
>d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Length = 168 Back     information, alignment and structure
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Length = 127 Back     information, alignment and structure
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Length = 128 Back     information, alignment and structure
>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
d1s7ja_260 Hypothetical protein EF0119 {Enterococcus faecalis 99.9
d1xuba2150 Phenazine biosynthesis protein PhzF {Pseudomonas f 99.72
d1qy9a2168 Hypothetical protein YddE {Escherichia coli [TaxId 99.69
d1qy9a1127 Hypothetical protein YddE {Escherichia coli [TaxId 99.43
d1xuba1128 Phenazine biosynthesis protein PhzF {Pseudomonas f 99.36
d1u0ka1129 Hypothetical protein PA4716 {Pseudomonas aeruginos 99.35
d1u0ka2153 Hypothetical protein PA4716 {Pseudomonas aeruginos 99.23
d1tm0a_332 Proline racemase {Brucella melitensis [TaxId: 2945 97.92
d2gkea1130 Diaminopimelate epimerase {Haemophilus influenzae 97.4
d2gkea2144 Diaminopimelate epimerase {Haemophilus influenzae 91.01
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein EF0119
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.90  E-value=3e-24  Score=169.88  Aligned_cols=138  Identities=34%  Similarity=0.477  Sum_probs=101.6

Q ss_pred             CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080            1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS   80 (165)
Q Consensus         1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~   80 (165)
                      |||||||||||||+|++.+........+.+..+.+.+....                +.  ..+.+|.....+...  ..
T Consensus        68 vpfcGH~Tlaaa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~~~~--~~  127 (260)
T d1s7ja_          68 IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKE----------------EY--YYLDFPYILPERIPI--LP  127 (260)
T ss_dssp             ESCCHHHHHHHHHHHHHHSCCCSSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECCC--CH
T ss_pred             cccccchhHHHHHHHHHhCccccceeeEEeeccceeeeecc----------------cc--ccccccccCcccccc--ch
Confidence            69999999999999999988777778888888877776653                23  233344433344432  22


Q ss_pred             HHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCCCCCCc
Q 047080           81 LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEV  160 (165)
Q Consensus        81 ~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~Gi~ED  160 (165)
                      +......... ..  .+ +..++++++++.+.|.+++||.+++++++...+++.+...   ++.++++|+|+|+.||+||
T Consensus       128 ~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~l~~l~pd~~~l~~l~~~~~~~~~~~~---~~~~~~~R~F~P~~Gi~ED  200 (260)
T d1s7ja_         128 EYEAALGTKI-YE--AY-LGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTASG---DSVDFVSRTFFPKLRINED  200 (260)
T ss_dssp             HHHHHHTSCC-SE--EE-ESSSEEEECSCHHHHHHCCCCHHHHHHCSSCSSEEEEEEC---SSSSEEEEEEEGGGTEEEE
T ss_pred             hhhhhcccce-eE--Ee-cCCcceeeecchhhhhhcCCCHHHHhhcCceEEEEEeecC---CcceEEEEEeccccCcCcc
Confidence            3333444333 22  22 3467778889999999999999999999887777766654   4689999999999999999


Q ss_pred             ccCCC
Q 047080          161 ITRWF  165 (165)
Q Consensus       161 paTg~  165 (165)
                      ||||-
T Consensus       201 paTGS  205 (260)
T d1s7ja_         201 PVCGS  205 (260)
T ss_dssp             SCCST
T ss_pred             ccchh
Confidence            99993
>d1xuba2 d.21.1.2 (A:129-278) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId: 29459]} Back     information, alignment and structure
>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure