Citrus Sinensis ID: 047081

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MDHSSEEDADISDSEMVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIGNSSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSKCDEAHE
ccccccccccccHHHHHHHHHHHHHHHHccccEEEccccEEEcccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHcccccccEEEccccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHccccccccccEEEEEccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccEEEcccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEcccEEEEEEccccccccccEccccHHHHHHHHHHccccccEEEEcEccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHcccccccEEEEEEEHHHcccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEHHHccc
mdhsseedadisdsemvdyedrsyeklksgnynvkisdetftcpycpkkrkhdYLYKDLLQHasgignssKRSAKEKANHLALAKFLEtdlsdvgsqskpvngvdplnvcsdgkfvwpwigivvniptrrgqdgrsvgesgsKLKDELirrglhptrvqslwnfrghsgcalvqfnknwpgldnaMAFEKSFeadhhgkkdwndgnqvksglygwvarsddhslnniigehlrknrdlKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLrgtskcdeahe
mdhsseedadisdsemvdyEDRSYEklksgnynvkisdetftcpycpKKRKHDYLYKDLLQHASGIGNSSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVvniptrrgqdgrsvgesgsklkdelirrglhPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHhgkkdwndgnQVKSGLYGWVARSDDHSLnniigehlrknrdLKTISGLVeeearkknllvsnltntievknkhlEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGvdlqkreaknendRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIErlrgtskcdeahe
MdhsseedadisdseMVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIGNSSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSKCDEAHE
*****************************GNYNVKISDETFTCPYCPKKRKHDYLYKDLLQH*******************ALAKFL**************NGVDPLNVCSDGKFVWPWIGIVVNIPT*******************LIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGV*********************************************************************************************
******************YEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQ********************ALAK****************************KFVWPWIGIVVNIPTRRG*******ESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSL****************************************************************************************************************************************************************************************************************
*************SEMVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIG***********NHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVVNIPTR************SKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGT********
***********SDSEMVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIGNSSKRSAKEKANHLALAKFLETDLSDVG***************SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSKC*****
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MDHSSEEDADISDSEMVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIGNSSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKCDEAHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
255584877 640 conserved hypothetical protein [Ricinus 0.979 0.660 0.674 1e-168
356539854 640 PREDICTED: uncharacterized protein LOC10 0.972 0.656 0.664 1e-162
224112749 721 predicted protein [Populus trichocarpa] 0.979 0.586 0.658 1e-159
449459906 643 PREDICTED: uncharacterized protein LOC10 0.953 0.640 0.653 1e-153
356561201 635 PREDICTED: uncharacterized protein LOC10 0.969 0.659 0.647 1e-152
225449483 641 PREDICTED: uncharacterized protein LOC10 0.930 0.627 0.668 1e-151
449503267 631 PREDICTED: uncharacterized LOC101219429 0.951 0.651 0.648 1e-150
356523864 654 PREDICTED: uncharacterized protein LOC10 0.979 0.646 0.624 1e-148
356499107 1172 PREDICTED: uncharacterized protein LOC10 0.974 0.359 0.586 1e-135
356553836 1154 PREDICTED: uncharacterized protein LOC10 0.974 0.364 0.579 1e-133
>gi|255584877|ref|XP_002533154.1| conserved hypothetical protein [Ricinus communis] gi|223527049|gb|EEF29235.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/427 (67%), Positives = 360/427 (84%), Gaps = 4/427 (0%)

Query: 1   MDHSSEEDADISDSEMVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLL 60
           +DHSS+ED D+S+SE+ +YE + YE+LK+G ++VKISDETFTCPYCPKKRK +YLY+DLL
Sbjct: 5   VDHSSDEDTDMSESELDEYEAQCYEELKNGTHHVKISDETFTCPYCPKKRKREYLYRDLL 64

Query: 61  QHASGIGNSS--KRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCS-DGKFVW 117
           QHASG+G S+  KRS KEKANHLAL K+LE D++D+GS SKP    DPL+ C+ D K VW
Sbjct: 65  QHASGVGRSASKKRSTKEKANHLALVKYLEKDIADLGSPSKPKGESDPLDSCNHDEKIVW 124

Query: 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177
           PW GIV+NIPT +  DGR VG SGSK +DELI RG +PTRV  LWN+RGHSG A+V+F+K
Sbjct: 125 PWTGIVINIPTTKAPDGRFVGASGSKFRDELISRGFNPTRVHPLWNYRGHSGSAVVEFHK 184

Query: 178 NWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRD 237
           +WPGL NA++FEK++EADHHGKKD+    + KSG+Y WVAR+DD+  +NIIG+HLRK  D
Sbjct: 185 DWPGLHNALSFEKAYEADHHGKKDYFTTGE-KSGVYCWVARADDYKADNIIGDHLRKTGD 243

Query: 238 LKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQG 297
           LKTIS ++EEEARK++ L+SNL N IE+KNKH++EM+++  ETS  +  LMEEKDRL+Q 
Sbjct: 244 LKTISEIMEEEARKQDKLISNLNNIIEIKNKHIQEMQDKFSETSVSLNKLMEEKDRLLQA 303

Query: 298 YNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAE 357
           YNEEI+KIQ+SA+ HFQ+IF +HE  KLQ+++QK+ELE  G +L+KREAKNENDR+ L+E
Sbjct: 304 YNEEIRKIQMSAREHFQKIFNDHEKLKLQVDSQKRELEMRGSELEKREAKNENDRRKLSE 363

Query: 358 EIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELE 417
           EIEKNA+RNSSLQLA  EQQKAD+NV KLAEDQK +KEELHN+IIQL+KQLDAKQALELE
Sbjct: 364 EIEKNAIRNSSLQLAAFEQQKADENVLKLAEDQKRQKEELHNRIIQLQKQLDAKQALELE 423

Query: 418 IERLRGT 424
           IERLRGT
Sbjct: 424 IERLRGT 430

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356539854|ref|XP_003538408.1| PREDICTED: uncharacterized protein LOC100812353 [Glycine max] Back     alignment and taxonomy information
>gi|224112749|ref|XP_002316281.1| predicted protein [Populus trichocarpa] gi|222865321|gb|EEF02452.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459906|ref|XP_004147687.1| PREDICTED: uncharacterized protein LOC101219429 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356561201|ref|XP_003548872.1| PREDICTED: uncharacterized protein LOC100786758 [Glycine max] Back     alignment and taxonomy information
>gi|225449483|ref|XP_002278500.1| PREDICTED: uncharacterized protein LOC100244410 [Vitis vinifera] gi|296086223|emb|CBI31664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449503267|ref|XP_004161917.1| PREDICTED: uncharacterized LOC101219429 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523864|ref|XP_003530554.1| PREDICTED: uncharacterized protein LOC100806029 [Glycine max] Back     alignment and taxonomy information
>gi|356499107|ref|XP_003518385.1| PREDICTED: uncharacterized protein LOC100806426 [Glycine max] Back     alignment and taxonomy information
>gi|356553836|ref|XP_003545257.1| PREDICTED: uncharacterized protein LOC100790814 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2114560 647 IDN2 "AT3G48670" [Arabidopsis 0.942 0.629 0.543 8.8e-118
TAIR|locus:2014754 736 FDM4 "AT1G13790" [Arabidopsis 0.706 0.414 0.426 5.2e-79
TAIR|locus:2825160 634 FDM5 "factor of DNA methylatio 0.944 0.643 0.396 5.7e-75
TAIR|locus:2148323 561 AT5G59390 [Arabidopsis thalian 0.747 0.575 0.410 1.2e-67
TAIR|locus:2200487 634 FDM1 "factor of DNA methylatio 0.928 0.632 0.361 2.2e-66
TAIR|locus:2125078 554 AT4G01180 "AT4G01180" [Arabido 0.699 0.545 0.415 3.2e-65
TAIR|locus:2126081 635 FDM2 "AT4G00380" [Arabidopsis 0.928 0.631 0.365 1.8e-64
TAIR|locus:2171716625 SGS3 "SUPPRESSOR OF GENE SILEN 0.671 0.464 0.224 1.5e-06
ZFIN|ZDB-GENE-060420-2 349 smyhc1l "slow myosin heavy cha 0.444 0.550 0.260 4.3e-06
TAIR|locus:2162996983 AT5G41140 "AT5G41140" [Arabido 0.453 0.199 0.240 4.5e-06
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 226/416 (54%), Positives = 300/416 (72%)

Query:    16 MVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIGNSS--KRS 73
             M +Y D+ Y  LK G   V++S + F CPYCP K+K  + YKDLLQHASG+GNS+  KRS
Sbjct:    21 MDEYGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRS 80

Query:    74 AKEKANHLALAKFLETDLSDVGSQSKPV-----NGVDPLNVCS-DGKFVWPWIGIVVNIP 127
             AKEKA+HLAL K+L+ DL+D  S+++P      NG +P+  C  D K V+PW GIVVNIP
Sbjct:    81 AKEKASHLALVKYLQQDLADSASEAEPSSKRQKNG-NPIQDCDHDEKLVYPWKGIVVNIP 139

Query:   128 TRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187
             T + QDGRS GESGSKL+DE I RG +PTRV+ LWN+ GHSG A+V+FNK+W GL N + 
Sbjct:   140 TTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 199

Query:   188 FEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEE 247
             F+K++  D HGKKDW   +  K GLYGW+AR+DD++ NNIIGE+LRK  DLKTI+ L EE
Sbjct:   200 FDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEE 259

Query:   248 EARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQL 307
             EARK+ LLV NL   +E K K ++E++E C   S  +  LMEEK++  Q +  E+  IQ 
Sbjct:   260 EARKQELLVQNLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEKEKNQQKHYRELNAIQE 319

Query:   308 SAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNS 367
                 H Q+I  +HE  K  LE+++K+LE    +L KRE  N  +R  L+E++E+NA +NS
Sbjct:   320 RTMSHIQKIVDDHEKLKRLLESERKKLEIKCNELAKREVHNGTERMKLSEDLEQNASKNS 379

Query:   368 SLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRG 423
             SL+LA +EQQKAD+ V+KLAEDQ+ +KEELH KII+LE+Q D KQA+ELE+E+L+G
Sbjct:   380 SLELAAMEQQKADEEVKKLAEDQRRQKEELHEKIIRLERQRDQKQAIELEVEQLKG 435
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0006306 "DNA methylation" evidence=IGI;IMP
GO:0006342 "chromatin silencing" evidence=IGI
TAIR|locus:2014754 FDM4 "AT1G13790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825160 FDM5 "factor of DNA methylation 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200487 FDM1 "factor of DNA methylation 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126081 FDM2 "AT4G00380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171716 SGS3 "SUPPRESSOR OF GENE SILENCING 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060420-2 smyhc1l "slow myosin heavy chain 1, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2162996 AT5G41140 "AT5G41140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam03468116 pfam03468, XS, XS domain 2e-45
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 6e-41
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 6e-17
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information 
 Score =  152 bits (387), Expect = 2e-45
 Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 111 SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGC 170
            + K+VWPW+GI+VN+PT + +DGR VGESG+ L+D L R   +P +V+ LWN  GH+G 
Sbjct: 1   QEEKYVWPWMGILVNVPTEKKKDGRGVGESGATLRDRLSR--FNPLKVKPLWNREGHTGF 58

Query: 171 ALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNII 228
           A+V+F K+W G  +A+ FEK FE   HGKKDW       S LYGWVAR+DD++   ++
Sbjct: 59  AIVKFAKDWSGFRDALRFEKHFEKQGHGKKDWLARRGQDSKLYGWVARADDYNSPGLV 116

The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition. Length = 116
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.71
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.57
PRK11637 428 AmiB activator; Provisional 94.56
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.3
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.19
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 93.93
PRK11637 428 AmiB activator; Provisional 93.66
PF15066527 CAGE1: Cancer-associated gene protein 1 family 93.55
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.46
KOG0996 1293 consensus Structural maintenance of chromosome pro 93.46
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.14
KOG0996 1293 consensus Structural maintenance of chromosome pro 92.49
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 92.45
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.9
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 91.67
KOG0933 1174 consensus Structural maintenance of chromosome pro 91.58
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 91.53
KOG0579 1187 consensus Ste20-like serine/threonine protein kina 91.07
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 90.54
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 90.36
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.04
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 88.48
PF05010207 TACC: Transforming acidic coiled-coil-containing p 88.24
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 87.81
KOG4572 1424 consensus Predicted DNA-binding transcription fact 87.43
PF13851201 GAS: Growth-arrest specific micro-tubule binding 86.74
KOG1853 333 consensus LIS1-interacting protein NUDE [Cytoskele 86.24
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 86.07
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 86.06
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 85.88
PF1425970 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or 85.62
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 85.54
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 85.26
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 84.14
PTZ00121 2084 MAEBL; Provisional 83.5
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 83.14
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 82.29
PF15272196 BBP1_C: Spindle pole body component BBP1, C-termin 82.04
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 81.72
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 81.48
PRK12704 520 phosphodiesterase; Provisional 81.2
PRK00106 535 hypothetical protein; Provisional 80.76
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 80.66
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 80.13
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=7.2e-48  Score=335.81  Aligned_cols=116  Identities=50%  Similarity=0.949  Sum_probs=88.8

Q ss_pred             CCCeeeccceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHh
Q 047081          111 SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEK  190 (432)
Q Consensus       111 ~de~~VWPwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~  190 (432)
                      +||+|||||||||+||+|+.+++|+++|+|+++|+++|+.  |+|.+|+||||+.||+|+|||+|++||+||+||++||+
T Consensus         1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~--f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~   78 (116)
T PF03468_consen    1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAE--FNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK   78 (116)
T ss_dssp             ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred             CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHh--cCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence            5899999999999999996667999999999999999999  99999999999999999999999999999999999999


Q ss_pred             hhhhccCChhhhhccCCCCCcceeeecccCCCCCCcch
Q 047081          191 SFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNII  228 (432)
Q Consensus       191 ~Fe~~~~Gr~dW~~~~~~~~~LYGw~AradD~~~~~~i  228 (432)
                      ||+.++|||+||.+++..+++||||||++|||++.|||
T Consensus        79 ~F~~~~~Gr~dW~~~~~~~~~lYGw~A~~dD~~~~~~i  116 (116)
T PF03468_consen   79 HFEAQGHGRKDWERRRGGGSQLYGWVARADDYNSPGPI  116 (116)
T ss_dssp             HHHHTT-SHHHHT-SSS---S-EEEE-BHHHHHSSSHH
T ss_pred             HHHHcCCCHHHHhhccCCCCceeeeeCchhhccCCCCC
Confidence            99999999999999888899999999999999999986

SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF14259 RRM_6: RNA recognition motif (a Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
4e8u_A172 Crystal Structure Of Arabidopsis Idn2 Xs Domain Alo 2e-55
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With A Small Segment Of Adjacent Coiled-Coil Region Length = 172 Back     alignment and structure 
Iteration: 1

 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 127/166 (76%)
Query: 112 DGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCA 171
           D K V+PW GIVVNIPT + QDGRS GESGSKL+DE I RG +PTRV+ LWN+ GHSG A
Sbjct: 6   DEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTA 65
Query: 172 LVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEH 231
           +V+FNK+W GL N + F+K++  D HGKKDW   +  K GLYGW+AR+DD++ NNIIGE+
Sbjct: 66  IVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGEN 125
Query: 232 LRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERC 277
           LRK  DLKTI+ L EEEARK+ LLV NL   +E K K ++E++E C
Sbjct: 126 LRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEELC 171

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 1e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-07
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 5e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  214 bits (546), Expect = 1e-68
 Identities = 101/167 (60%), Positives = 127/167 (76%)

Query: 111 SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGC 170
            D K V+PW GIVVNIPT + QDGRS GESGSKL+DE I RG +PTRV+ LWN+ GHSG 
Sbjct: 5   HDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGT 64

Query: 171 ALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGE 230
           A+V+FNK+W GL N + F+K++  D HGKKDW   +  K GLYGW+AR+DD++ NNIIGE
Sbjct: 65  AIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGE 124

Query: 231 HLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERC 277
           +LRK  DLKTI+ L EEEARK+ LLV NL   +E K K ++E++E C
Sbjct: 125 NLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEELC 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.89
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 91.9
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.74
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.68
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 91.36
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 90.97
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 90.63
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 89.97
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 89.75
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 89.24
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 88.71
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.67
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 88.02
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.2
2hgn_A139 Heterogeneous nuclear ribonucleoprotein F; RNA rec 87.14
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 86.99
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 86.78
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 86.68
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 86.43
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 86.42
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 86.31
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 86.24
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 86.23
1wi8_A104 EIF-4B, eukaryotic translation initiation factor 4 85.71
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 85.6
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 85.54
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 85.36
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 85.03
3ulh_A107 THO complex subunit 4; nuclear protein, RNA bindin 84.85
1deq_A 390 Fibrinogen (alpha chain); coiled-coil, blood clott 84.08
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 83.98
2dng_A103 Eukaryotic translation initiation factor 4H; RRM d 83.78
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 83.24
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 82.93
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 82.8
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 82.73
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 82.09
2hgl_A136 HNRPF protein, heterogeneous nuclear ribonucleopro 81.73
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 81.61
2la6_A99 RNA-binding protein FUS; structural genomics, nort 81.2
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 81.02
2ek1_A95 RNA-binding protein 12; RNA recognition motif, dim 81.01
3lqv_A115 PRE-mRNA branch site protein P14; cysless mutant, 80.7
2cph_A107 RNA binding motif protein 19; RNA recognition moti 80.61
1wel_A124 RNA-binding protein 12; structural genomics, NPPSF 80.61
2kt5_A124 RNA and export factor-binding protein 2; chaperone 80.49
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=7.6e-68  Score=485.74  Aligned_cols=168  Identities=60%  Similarity=1.037  Sum_probs=162.9

Q ss_pred             CCCeeeccceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHh
Q 047081          111 SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEK  190 (432)
Q Consensus       111 ~de~~VWPwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~  190 (432)
                      ++++|||||||||+||||++++||+++|+|+++|+++|+..||+|++|+|+||++||+|+|||+|++||+||+||++||+
T Consensus         5 ~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek   84 (172)
T 4e8u_A            5 HDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDK   84 (172)
T ss_dssp             -CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHH
Confidence            89999999999999999978899999999999999999777799999999999999999999999999999999999999


Q ss_pred             hhhhccCChhhhhccCCCCCcceeeecccCCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047081          191 SFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHL  270 (432)
Q Consensus       191 ~Fe~~~~Gr~dW~~~~~~~~~LYGw~AradD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l  270 (432)
                      ||+.+||||+||.++++.+++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||++|
T Consensus        85 ~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~~l  164 (172)
T 4e8u_A           85 AYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDM  164 (172)
T ss_dssp             HHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 047081          271 EEMKERCI  278 (432)
Q Consensus       271 ~~lE~k~~  278 (432)
                      ++||++||
T Consensus       165 ~ele~k~~  172 (172)
T 4e8u_A          165 KEIEELCS  172 (172)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhhC
Confidence            99999997
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Back     alignment and structure
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 95.31
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 93.39
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 91.7
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 91.51
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 91.34
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 91.32
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 90.98
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 90.81
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 90.14
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 88.78
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 88.72
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 88.08
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 87.72
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 87.66
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 87.57
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 85.92
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 85.9
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 85.45
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 85.39
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 84.4
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 84.34
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 84.01
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 83.76
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 83.71
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 83.37
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 82.14
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 81.69
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 81.33
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 81.09
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 80.87
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 80.67
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.013  Score=43.76  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=48.0

Q ss_pred             eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCccchHHHHhhHhh
Q 047081          120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKS  191 (432)
Q Consensus       120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~  191 (432)
                      ++.|-|+|.         ..+...|++.|+.  |.+. .|+.+.++.+.+|+|.|.| .+-..-..|+.++++
T Consensus         2 tv~V~nlp~---------~~t~~~l~~~F~~--~G~I~~v~~~~~~~~~~~~afV~F-~~~~~a~~Al~~~~~   62 (75)
T d2ghpa2           2 TVLVKNLPK---------SYNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEF-ARYDGALAAITKTHK   62 (75)
T ss_dssp             EEEEEEECT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEE-SSHHHHHHHHTTTTC
T ss_pred             EEEEECCCC---------CCCHHHHHHHHhc--CCceEEEEEEeeccccceEEEEEE-cchHHhHHHHHhcCc
Confidence            578899986         4588999999999  7764 4777788889999999999 456677888776554
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure