Citrus Sinensis ID: 047089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MEVLPEAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcc
Coil and Loop (DISEMBL)
mevlpeaeKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATsltnvtgftplFGFACALETLCgqaygaeqyqkigtYTYSAMFFCIAICLPISVLWIFMDKILMLlhqnpqisvEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Flexible Loop (DISEMBL)
mevlpeaekeeekkkwavTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Low Complexity Region (SEG)
MEVLPEAekeeekkkWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Disordered region (IsUnstruct)
***************WAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL**
Disordered Region (DISOPRED)
*******************RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Disordered Region (DISEMBL)
***************WAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Disordered Region (DISPRO)
***************WAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVLPEAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8GXM8	476	MATE efflux family protei	no	no	0.863	0.331	0.575	3e-46
Q9SIA4	476	MATE efflux family protei	no	no	0.825	0.317	0.596	6e-44
Q9SIA5	476	MATE efflux family protei	no	no	0.863	0.331	0.544	5e-42
Q9SIA3	476	MATE efflux family protei	no	no	0.841	0.323	0.551	9e-41
Q9SIA1	477	MATE efflux family protei	no	no	0.857	0.329	0.522	8e-40
Q8RWF5	483	MATE efflux family protei	no	no	0.874	0.331	0.518	1e-39
Q9LUH3	469	MATE efflux family protei	no	no	0.972	0.379	0.331	5e-23
Q9LUH2	477	MATE efflux family protei	no	no	0.994	0.381	0.322	6e-23
Q5RFD2	570	Multidrug and toxin extru	yes	no	0.830	0.266	0.326	3e-17
Q96FL8	570	Multidrug and toxin extru	yes	no	0.830	0.266	0.326	5e-17

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 119/158 (75%)

Query: 26  ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
           ELKKV+ LAAP+A VT+ Q LLP +S M+ GH+G+L LA + +ATS TNV+GF+ +FG  
Sbjct: 27  ELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGLV 86

Query: 86  CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
            ALETLCGQAYGAEQY+KIGTYTYSAM   I IC  IS+LWI+++K+L+ L Q P IS  
Sbjct: 87  GALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRV 146

Query: 146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           A +Y++WL+PALF +AI   L   L AQ L+++L  S+
Sbjct: 147 AGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSA 184

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  176 bits (447), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 114/151 (75%)

Query: 26  ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
           ELKKV+ LAAP+A VT+ Q LLP +S M+ GH G+L L+ + +ATS TNV+GF+ LFG A
Sbjct: 27  ELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSILFGLA 86

Query: 86  CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
            ALETLCGQAYGA+QY+KIGTYTYSA    I IC+ ISVLWI+++K+L+ L Q+P IS  
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRV 146

Query: 146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLI 176
           A +YA+WLIPALF +A    L   L AQ L+
Sbjct: 147 AGSYALWLIPALFAHAFFIPLTRFLLAQGLV 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 115/158 (72%)

Query: 26  ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
           ELK+V+ LAAP+A VT+ Q LLP +S M+ GH G+L L+ + +A S TNVTGF+ + G  
Sbjct: 27  ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86

Query: 86  CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
            ALETLCGQAYGA+QY+KIGTY YSA+   I IC  IS+LW++++KIL+ L Q+P+IS  
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRI 146

Query: 146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           A +YA WLIPALFG AI+  L   L  Q L++ L  ++
Sbjct: 147 AGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTA 184

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  166 bits (420), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 114/154 (74%)

Query: 26  ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
           ELKKV+ LA P+A VT+ Q LLP +S M+ GH G+L L+ + +ATS TNV+GF+ +FG  
Sbjct: 27  ELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGLV 86

Query: 86  CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
            +LETL GQAYGA+QY+K+GTYTYSA+   I IC+ IS+LWI+M+K+L+ L Q+P IS  
Sbjct: 87  GSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRV 146

Query: 146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179
           A +YA+ LIP LF +AI+  L   L AQ L+L L
Sbjct: 147 AGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPL 180

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 110/157 (70%)

Query: 23  FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLF 82
           F  ELK V+ +AAP+A VTV Q LLP +S M+ GH G+L L+ +T+AT+  NV+GF  ++
Sbjct: 27  FTAELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCGELQLSGVTLATAFANVSGFGIMY 86

Query: 83  GFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQI 142
           G   ALETLCGQAYGA+QY KIGTYT+SA+   + I + IS+LW +MDK+ + L Q+P I
Sbjct: 87  GLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDI 146

Query: 143 SVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179
           S  A +YA+ LIPAL   A+ + L   LQ Q L+L L
Sbjct: 147 SKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPL 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 111/160 (69%)

Query: 20  RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFT 79
           R  F  ELK ++ +A P+A VTV Q LLP +S M+ GH  +L L+ + +ATS TNV+GF+
Sbjct: 24  RMNFTAELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFS 83

Query: 80  PLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQN 139
            +FG A ALETLCGQAYGA+QY KIGTYT+SA+   + I + IS+LW +MDK+ + L Q+
Sbjct: 84  VMFGLAGALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQD 143

Query: 140 PQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179
           P IS  A +YA+ LIPAL   A+ + L   LQ Q L+L L
Sbjct: 144 PDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPL 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%)

Query: 6   EAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLAS 65
           + E   +K    V +   V+E K     + P+    +F   +P  S M    LG+L LA 
Sbjct: 11  DGEGGRDKSSTFVQKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAG 70

Query: 66  ITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL 125
            T+A S   VTGF  + G + ALETLCGQ +GA+ Y+ +G +  S+    +   + I++L
Sbjct: 71  ATLANSWATVTGFAFMTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITIL 130

Query: 126 WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           W F + + +LL Q+P IS +A  Y  +L P L  Y  L+++    Q Q ++  L L S
Sbjct: 131 WFFTESVFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFS 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 2   EVLPEAEKEEEKKKWAVTRRAF-VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGK 60
            V  E E+    +   + ++   V+E K     + P+    VF   +P  S M   HLG+
Sbjct: 14  HVGGEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQ 73

Query: 61  LSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICL 120
           L LA  T+A S   V+GF  + G + +LETLCGQ +GA++Y+ +G +  S+    +   +
Sbjct: 74  LELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSI 133

Query: 121 PISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180
            I++ W F + I  LL Q+P IS +A  Y  +  P L  Y  L+++    Q QS+I  L 
Sbjct: 134 LITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLV 193

Query: 181 LSS 183
           + S
Sbjct: 194 IFS 196

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 1/153 (0%)

Query: 5   PEAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLA 64
           PEA  E    ++ +   AF +EL+ +  LA P   V +   L+  +S++  GHLGKL L 
Sbjct: 14  PEATLEIHGSRF-LRLSAFREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELD 72

Query: 65  SITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV 124
           ++T+A ++ NVTG +  FG + A +TL  Q YG++  + +G     +    +  C P   
Sbjct: 73  AVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWA 132

Query: 125 LWIFMDKILMLLHQNPQISVEARNYAIWLIPAL 157
           L++    IL+L  Q+P +S   + Y    IPAL
Sbjct: 133 LFLNTQHILLLFRQDPDVSRLTQTYVTIFIPAL 165

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Pongo abelii (taxid: 9601)

>sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 1/153 (0%)

Query: 5   PEAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLA 64
           PEA  E    +  +   AF +EL+ +  LA P   V +   L+  +S++  GHLGKL L 
Sbjct: 14  PEATLEVRGSR-CLRLSAFREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELD 72

Query: 65  SITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV 124
           ++T+A ++ NVTG +  FG + A +TL  Q YG++  + +G     +    +  C P   
Sbjct: 73  AVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWA 132

Query: 125 LWIFMDKILMLLHQNPQISVEARNYAIWLIPAL 157
           L++    IL+L  Q+P +S   + Y    IPAL
Sbjct: 133 LFLNTQHILLLFRQDPDVSRLTQTYVTIFIPAL 165

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
219921318	470	putative MATE transporter [Nicotiana tab	0.983	0.382	0.573	5e-51
255574294	470	TRANSPARENT TESTA 12 protein, putative [	0.967	0.376	0.564	6e-51
359488145	494	PREDICTED: MATE efflux family protein 5-	0.956	0.354	0.582	2e-49
147782271	489	hypothetical protein VITISV_044050 [Viti	0.956	0.357	0.582	2e-49
224077218	475	predicted protein [Populus trichocarpa]	0.972	0.374	0.584	1e-48
356515374	480	PREDICTED: MATE efflux family protein DT	0.972	0.370	0.573	1e-48
356499620	475	PREDICTED: MATE efflux family protein DT	0.945	0.364	0.571	9e-48
388497886	485	unknown [Medicago truncatula]	0.961	0.362	0.534	2e-47
357508229	479	Protein TRANSPARENT TESTA [Medicago trun	0.961	0.367	0.534	2e-47
297837775	500	predicted protein [Arabidopsis lyrata su	0.972	0.356	0.544	3e-47

>gi|219921318|emb|CAQ51477.1| putative MATE transporter [Nicotiana tabacum]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 132/183 (72%), Gaps = 3/183 (1%)

Query: 1   MEVLPEAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGK 60
           +E LP++ KE   KKW +   A  QELKK +   AP+  VTVFQ LL  VS MMVGHLG+
Sbjct: 2   VEELPQSLKE---KKWQINWDAVSQELKKTSRFMAPMVAVTVFQYLLQVVSVMMVGHLGE 58

Query: 61  LSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICL 120
           L+L+S+ IATSLTNVTGF+ L G    +ETLCGQAYGA+QY K+ TYTY+A+     +C+
Sbjct: 59  LALSSVAIATSLTNVTGFSLLTGLVGGMETLCGQAYGAQQYHKLSTYTYTAIISLFLVCI 118

Query: 121 PISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180
           PI VLW FMDK+L+L  Q+  ISVEAR Y++W+IPA+FG AI + L    QAQSLIL + 
Sbjct: 119 PICVLWCFMDKLLILTGQDHSISVEARKYSLWVIPAIFGGAISKPLSRYSQAQSLILPML 178

Query: 181 LSS 183
           LSS
Sbjct: 179 LSS 181

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574294|ref|XP_002528061.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532522|gb|EEF34311.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 133/177 (75%)

Query: 7   AEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASI 66
           AE   E+KKWA+T   F++ELKK +++AAP+  V+V Q LL  VS MMVGHLG+L+L+S+
Sbjct: 9   AEAGSEEKKWAITWGGFMEELKKESYIAAPMVVVSVLQYLLQVVSVMMVGHLGELALSSV 68

Query: 67  TIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLW 126
            IATSLTN  GF+ L G A  +ETLCGQAYGA+QY K+GTYT+SA+   + +C PI +LW
Sbjct: 69  AIATSLTNAVGFSLLSGMAGGVETLCGQAYGAQQYHKLGTYTFSAIISLVMVCPPICLLW 128

Query: 127 IFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           IFMD++L L+ Q+ +IS +A  Y+IWLIPALFG AIL+ +   LQ QS+I  + LSS
Sbjct: 129 IFMDRLLPLIGQDSEISNQACKYSIWLIPALFGSAILKPVTRFLQTQSVIFPMLLSS 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 125/175 (71%)

Query: 9   KEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITI 68
             EEK+   VT   F  ELKKV  LAAP+   TV Q LL   S +MVGHLG++SL+++ I
Sbjct: 10  SREEKRCEEVTWGGFAGELKKVGCLAAPMVVATVSQYLLQVASVVMVGHLGQVSLSAVAI 69

Query: 69  ATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIF 128
           AT+LTNVTGF+ L G A  LETLCGQAYGA QY K+G YTYSA      +CLPI +LWIF
Sbjct: 70  ATALTNVTGFSLLSGLAGGLETLCGQAYGAHQYGKLGIYTYSATISLAFVCLPICLLWIF 129

Query: 129 MDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           MDK+L+L+ Q+P I+ EARNY+IWLIP L+G AIL+ L   LQ QSLI  + +SS
Sbjct: 130 MDKLLILIGQDPLIAHEARNYSIWLIPGLYGSAILKPLVRYLQTQSLIFPMLISS 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782271|emb|CAN69572.1| hypothetical protein VITISV_044050 [Vitis vinifera]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 125/175 (71%)

Query: 9   KEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITI 68
             EEK+   VT   F  ELKKV  LAAP+   TV Q LL   S +MVGHLG++SL+++ I
Sbjct: 5   SREEKRCEEVTWGGFAGELKKVGCLAAPMVVATVSQYLLQVASVVMVGHLGQVSLSAVAI 64

Query: 69  ATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIF 128
           AT+LTNVTGF+ L G A  LETLCGQAYGA QY K+G YTYSA      +CLPI +LWIF
Sbjct: 65  ATALTNVTGFSLLSGLAGGLETLCGQAYGAHQYGKLGIYTYSATISLAFVCLPICLLWIF 124

Query: 129 MDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           MDK+L+L+ Q+P I+ EARNY+IWLIP L+G AIL+ L   LQ QSLI  + +SS
Sbjct: 125 MDKLLILIGQDPLIAHEARNYSIWLIPGLYGSAILKPLVRYLQTQSLIFPMLISS 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 132/178 (74%)

Query: 6   EAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLAS 65
           E E + E++KWA+T   FVQELKK  +LAAP+  V+V Q LL  VS ++VGHLG L+L+S
Sbjct: 2   EGEGKREERKWAITWEGFVQELKKAGYLAAPMVAVSVLQYLLQVVSVIIVGHLGALALSS 61

Query: 66  ITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL 125
             IATS+TNVTGF+ L G A  LETL GQAYGA+QYQK+GTYTYSA+   I +C PI VL
Sbjct: 62  AAIATSITNVTGFSLLSGMAGGLETLAGQAYGAKQYQKLGTYTYSAIISLIIMCPPICVL 121

Query: 126 WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           WIF+ K+L LL Q+  IS EA  Y++WLIPALFG A+L+ L   LQ QS+IL + ++S
Sbjct: 122 WIFIGKLLPLLGQDTSISQEACKYSMWLIPALFGGAVLKPLTRYLQTQSVILPMLITS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 124/178 (69%)

Query: 6   EAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLAS 65
           E   E  K  W   RRA  +ELKKV  +AAP+   +V Q LL  VS +MVGHL +LSL++
Sbjct: 2   EEGSETGKWGWMKRRRAMREELKKVGTIAAPMVVASVLQYLLQVVSLVMVGHLNQLSLST 61

Query: 66  ITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL 125
           + IATSLTNV+GF+ L G A  LETL GQA+GA QY+K G YTY+A+     IC PI++L
Sbjct: 62  VAIATSLTNVSGFSVLSGMAGGLETLGGQAFGAGQYEKFGQYTYTAVISLSLICFPITIL 121

Query: 126 WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           W FMDKIL LL Q+P IS+EAR YAIWLIPALFG AIL+ L    Q QSLI  + L+S
Sbjct: 122 WTFMDKILTLLGQDPTISLEARKYAIWLIPALFGSAILKPLTRFFQTQSLISPMILTS 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499620|ref|XP_003518635.1| PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max] gi|356499622|ref|XP_003518636.1| PREDICTED: MATE efflux family protein DTX1-like isoform 2 [Glycine max]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 124/175 (70%), Gaps = 2/175 (1%)

Query: 9   KEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITI 68
           +E    KW   +    +ELKKV  +AAP+A  +V Q LLP VS +MVGHL +LSL+S+ I
Sbjct: 2   EESSTGKWGWMKMR--EELKKVGTIAAPMAVSSVLQYLLPVVSLVMVGHLNQLSLSSVAI 59

Query: 69  ATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIF 128
           ATSLTNV+GF+ L G A  LETLCGQA+GA QY+K G YTY+A+     +C PI++LWIF
Sbjct: 60  ATSLTNVSGFSVLSGMAGGLETLCGQAFGAGQYEKFGLYTYTAIISLSLVCFPITILWIF 119

Query: 129 MDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
            DKIL LL Q+P IS+E R YAIWLIPALFG AIL+ L    Q QSLI  + L+S
Sbjct: 120 NDKILTLLGQDPTISLEVRKYAIWLIPALFGSAILKPLTRFFQTQSLISPMILTS 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497886|gb|AFK37009.1| unknown [Medicago truncatula]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 123/176 (69%)

Query: 8   EKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASIT 67
           E    K +W  TR   ++ELKK+  +A P+   +V Q LL  VS MMVGHL +LSL+S+ 
Sbjct: 9   EGSNNKCEWTKTRTTLMEELKKMGTIAVPMVATSVLQYLLQVVSVMMVGHLNQLSLSSVA 68

Query: 68  IATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWI 127
           IATSLTNV+GF+ L G A  LETLCGQAYGA  Y+K G YTY+A+     +C PI+++W 
Sbjct: 69  IATSLTNVSGFSILSGMAGGLETLCGQAYGAGHYEKHGIYTYTAVISLTMVCAPITIIWT 128

Query: 128 FMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           FMDKIL+L+ Q+P IS++AR +A+WLIPALF  AIL+ L    Q QSLI  + +SS
Sbjct: 129 FMDKILILIGQDPTISLQARTFALWLIPALFASAILKPLTRFFQTQSLIFPMIISS 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508229|ref|XP_003624403.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355499418|gb|AES80621.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 123/176 (69%)

Query: 8   EKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASIT 67
           E    K +W  TR   ++ELKK+  +A P+   +V Q LL  VS MMVGHL +LSL+S+ 
Sbjct: 3   EGSNNKCEWTKTRTTLMEELKKMGTIAVPMVATSVLQYLLQVVSVMMVGHLNQLSLSSVA 62

Query: 68  IATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWI 127
           IATSLTNV+GF+ L G A  LETLCGQAYGA  Y+K G YTY+A+     +C PI+++W 
Sbjct: 63  IATSLTNVSGFSILSGMAGGLETLCGQAYGAGHYEKHGIYTYTAVISLTMVCAPITIIWT 122

Query: 128 FMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           FMDKIL+L+ Q+P IS++AR +A+WLIPALF  AIL+ L    Q QSLI  + +SS
Sbjct: 123 FMDKILILIGQDPTISLQARTFALWLIPALFASAILKPLTRFFQTQSLIFPMIISS 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837775|ref|XP_002886769.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332610|gb|EFH63028.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 131/180 (72%), Gaps = 2/180 (1%)

Query: 4   LPEAEKEEEKKKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSL 63
           L   E+EE+ +  A      V+ +KKV+ +AAP+  V+V Q LL  +S +M GHL +LSL
Sbjct: 7   LVRNEEEEDNRNGASYLS--VEMMKKVSSMAAPMVAVSVSQFLLQVISMVMAGHLDELSL 64

Query: 64  ASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPIS 123
           +++ IATSLTNVTGF+ + GFA ALETLCGQA+GAEQ+ KIG YTYS+M   +  C P+S
Sbjct: 65  SAVAIATSLTNVTGFSLIVGFAGALETLCGQAFGAEQFGKIGAYTYSSMLCLLVFCFPVS 124

Query: 124 VLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           ++WIFMDK+L L HQ+P IS  A  Y+IWLIPALFG+A+L+ +    Q+Q LIL LF+SS
Sbjct: 125 LVWIFMDKLLELFHQDPLISQLACRYSIWLIPALFGFALLQPMTCYFQSQGLILPLFVSS 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.857	0.323	0.573	1.6e-45
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.863	0.331	0.575	1.5e-44
TAIR|locus:2010926	502	AT1G64820 [Arabidopsis thalian	0.874	0.318	0.537	2.8e-43
TAIR|locus:2050180	476	AT2G04050 "AT2G04050" [Arabido	0.841	0.323	0.597	4.5e-43
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.912	0.347	0.529	9.3e-43
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.868	0.329	0.534	9.3e-43
TAIR|locus:2050190	476	DTX1 "AT2G04040" [Arabidopsis	0.863	0.331	0.544	7.5e-41
TAIR|locus:2050225	476	AT2G04070 "AT2G04070" [Arabido	0.841	0.323	0.551	1.8e-39
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.885	0.332	0.493	2.3e-39
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.879	0.331	0.496	6.1e-39

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 90/157 (57%), Positives = 119/157 (75%)

Query:    27 LKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFAC 86
             +KKV+F+AAP+  V   Q LL  +S +M GHL +LSL+++ IATSLTNVTGF+ +FG A 
Sbjct:    36 MKKVSFMAAPMVAVAASQYLLQVISIVMAGHLDELSLSAVAIATSLTNVTGFSLIFGLAG 95

Query:    87 ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEA 146
             ALETLCGQA+GA Q++ I  YTY +M   + +C PIS+LW+FMDK+L L HQ+P IS  A
Sbjct:    96 ALETLCGQAFGAGQFRNISAYTYGSMLCLLLVCFPISLLWVFMDKLLELFHQDPLISQLA 155

Query:   147 RNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
               Y+IWLIPALFGY++L+S+    Q+Q L+L LFLSS
Sbjct:   156 CRYSIWLIPALFGYSVLQSMTRFFQSQGLVLPLFLSS 192

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 91/158 (57%), Positives = 119/158 (75%)

Query:    26 ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
             ELKKV+ LAAP+A VT+ Q LLP +S M+ GH+G+L LA + +ATS TNV+GF+ +FG  
Sbjct:    27 ELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGLV 86

Query:    86 CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
              ALETLCGQAYGAEQY+KIGTYTYSAM   I IC  IS+LWI+++K+L+ L Q P IS  
Sbjct:    87 GALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRV 146

Query:   146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
             A +Y++WL+PALF +AI   L   L AQ L+++L  S+
Sbjct:   147 AGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSA 184

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 86/160 (53%), Positives = 119/160 (74%)

Query:    24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFG 83
             ++ +KKV+ +AAP+  V+V Q LL  +S +M GHL +LSL+++ IATSLTNVTGF+ + G
Sbjct:    27 MEMMKKVSSMAAPMVAVSVSQFLLQVISMVMAGHLDELSLSAVAIATSLTNVTGFSLIVG 86

Query:    84 FACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQIS 143
             FA AL+TLCGQA+GAEQ+ KIG YTYS+M   +  C  IS++W FMDK+L + HQ+P IS
Sbjct:    87 FAGALDTLCGQAFGAEQFGKIGAYTYSSMLCLLVFCFSISIVWFFMDKLLEIFHQDPLIS 146

Query:   144 VEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
               A  Y+IWLIPALFG+ +L+ +    Q+Q + L LF+SS
Sbjct:   147 QLACRYSIWLIPALFGFTLLQPMTRYFQSQGITLPLFVSS 186

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA;ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/154 (59%), Positives = 116/154 (75%)

Query:    26 ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
             ELKKV+ LAAP+A VT+ Q LLP +S M+ GH G+L L+ + +ATS TNV+GF+ LFG A
Sbjct:    27 ELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSILFGLA 86

Query:    86 CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
              ALETLCGQAYGA+QY+KIGTYTYSA    I IC+ ISVLWI+++K+L+ L Q+P IS  
Sbjct:    87 GALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRV 146

Query:   146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179
             A +YA+WLIPALF +A    L   L AQ L+L L
Sbjct:   147 AGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPL 180

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 90/170 (52%), Positives = 123/170 (72%)

Query:    16 WAVTRR-AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTN 74
             W+  R  +F  ELK++ F AAP+A V + Q +L  VS MMVGHLG LSLAS ++A+S  N
Sbjct:    23 WSDLRDGSFTVELKRLIFFAAPMAAVVIAQFMLQIVSMMMVGHLGNLSLASASLASSFCN 82

Query:    75 VTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIA-ICLPISVLWIFMDKIL 133
             VTGF+ + G +CAL+TL GQAYGA+ Y+K+G  TY+AMF C+A +CLP+S++W  M+K+L
Sbjct:    83 VTGFSFIIGLSCALDTLSGQAYGAKLYRKLGVQTYTAMF-CLALVCLPLSLIWFNMEKLL 141

Query:   134 MLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
             ++L Q+P I+ EA  YA WLIP LF YA+L+ L    Q QSLI  L ++S
Sbjct:   142 LILGQDPSIAHEAGKYATWLIPGLFAYAVLQPLTRYFQNQSLITPLLITS 191

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 85/159 (53%), Positives = 120/159 (75%)

Query:    25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGF 84
             +++KKV  +AAP+  V + Q LL   STM+VGH  +L+LA I + +S  NVTGF  LFG 
Sbjct:    27 EKMKKVASMAAPMVAVNMSQYLLQATSTMIVGHRSELALAGIALGSSFANVTGFGVLFGL 86

Query:    85 ACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISV 144
             + +LETLCGQAYGA+QY K+G+YT++++ F + I +PIS+LW+FM++IL+LLHQ+PQI+ 
Sbjct:    87 SGSLETLCGQAYGAKQYHKLGSYTFTSIVFLLIISVPISILWMFMNQILLLLHQDPQIAE 146

Query:   145 EARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
              A  Y +WL+PALFGY++L SL    Q+QSLI  + LSS
Sbjct:   147 LAGVYCLWLVPALFGYSVLESLVRYFQSQSLIYPMVLSS 185

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 86/158 (54%), Positives = 115/158 (72%)

Query:    26 ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
             ELK+V+ LAAP+A VT+ Q LLP +S M+ GH G+L L+ + +A S TNVTGF+ + G  
Sbjct:    27 ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86

Query:    86 CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
              ALETLCGQAYGA+QY+KIGTY YSA+   I IC  IS+LW++++KIL+ L Q+P+IS  
Sbjct:    87 GALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRI 146

Query:   146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
             A +YA WLIPALFG AI+  L   L  Q L++ L  ++
Sbjct:   147 AGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTA 184

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;IDA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015691 "cadmium ion transport" evidence=IDA

GO:0051238 "sequestering of metal ion" evidence=IDA

TAIR|locus:2050225 AT2G04070 "AT2G04070" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 85/154 (55%), Positives = 114/154 (74%)

Query:    26 ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
             ELKKV+ LA P+A VT+ Q LLP +S M+ GH G+L L+ + +ATS TNV+GF+ +FG  
Sbjct:    27 ELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGLV 86

Query:    86 CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
              +LETL GQAYGA+QY+K+GTYTYSA+   I IC+ IS+LWI+M+K+L+ L Q+P IS  
Sbjct:    87 GSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRV 146

Query:   146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179
             A +YA+ LIP LF +AI+  L   L AQ L+L L
Sbjct:   147 AGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPL 180

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 80/162 (49%), Positives = 113/162 (69%)

Query:    22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPL 81
             +F  ELK++   AAP+A V + Q ++  +S +MVGHLG+LSLAS + A S  NVTGF+ +
Sbjct:    27 SFTAELKRLICFAAPMAAVVIIQFMIQIISMVMVGHLGRLSLASASFAVSFCNVTGFSFI 86

Query:    82 FGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQ 141
              G +CAL+TL GQAYGA+ Y+K+G   Y+AMF    +CLP+S+LW  M K++++L Q+P 
Sbjct:    87 IGLSCALDTLSGQAYGAKLYRKLGVQAYTAMFCLTLVCLPLSLLWFNMGKLIVILGQDPA 146

Query:   142 ISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
             I+ EA  YA WLIP LF YA+L+ L    + QSLI  L ++S
Sbjct:   147 IAHEAGRYAAWLIPGLFAYAVLQPLIRYFKNQSLITPLLVTS 188

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 80/161 (49%), Positives = 113/161 (70%)

Query:    23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLF 82
             F++E KK++++A P+  V     +L  +S MMVGHLG+L L+S  IA S  +VTGF+ +F
Sbjct:    23 FLRETKKLSYIAGPMIAVNSSMYVLQVISIMMVGHLGELFLSSTAIAVSFCSVTGFSVVF 82

Query:    83 GFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQI 142
             G A ALETLCGQA GA+QY+K+G +TY+ +     +C+P+S+LW ++  IL L+ Q+  +
Sbjct:    83 GLASALETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIGQDAMV 142

Query:   143 SVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
             + EA  +A WLIPALFGYA L+ L    QAQSLIL L +SS
Sbjct:   143 AQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSS 183

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	4e-48
pfam01554	161	pfam01554, MatE, MatE	9e-23
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-18
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	4e-17
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-15
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	2e-13
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-11
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	2e-10
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	3e-10
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	6e-10
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	6e-10
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	2e-09
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	6e-09
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	3e-08
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	7e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	8e-08
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	1e-07
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	2e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	4e-06
cd13147	441	cd13147, MATE_MJ0709_like, Uncharacterized subfami	4e-06
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	7e-06
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	7e-06
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	9e-06
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	2e-05
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	2e-05
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	3e-05
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	5e-05
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	9e-05
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	4e-04
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	6e-04
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	0.003
cd13144	434	cd13144, MATE_like_4, Uncharacterized subfamily of	0.003

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  161 bits (410), Expect = 4e-48
 Identities = 76/158 (48%), Positives = 103/158 (65%)

Query: 26  ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
           E KK+  LAAPL   ++ Q  L  VS + VGHLGKL LA+ ++A+S  NVTGF+ L G A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 86  CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
            AL+TLCGQA+GA+ Y+ +G Y   A+   +  C+PIS+LW+  + IL+LL Q+P+I+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 146 ARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           A  Y  WLIP LF YA+   L   LQAQ ++L L   S
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYIS 158

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 88.8 bits (221), Expect = 9e-23
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 36  PLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQA 95
           P+    + Q L   + T+ VGHLG ++LA+++IA S+ ++  F  L G + AL TL GQA
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLI-FMFLLGLSTALTTLVGQA 59

Query: 96  YGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLI 154
            GA  +++ G      +   + I LPI++L  +F + IL L  Q+ ++   A  Y   L 
Sbjct: 60  LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILA 119

Query: 155 PALFGYAILRSLCHNLQAQS 174
             +   ++   L   L+   
Sbjct: 120 LGIPFLSLQFVLSGFLRGAG 139

The MatE domain. Length = 161

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 81.0 bits (201), Expect = 2e-18
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 26  ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFA 85
           EL+ +  LA P+    + Q+ +  V T+M G LG   LA++ + +SL     FT   G  
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPV-FTFGMGLL 59

Query: 86  CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVE 145
            A+  L  QA+GA   ++I       ++  + + LP+ +L      IL L+ Q P+++  
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAI 119

Query: 146 ARNYAIWL---IPALFGYAILRSLC 167
           AR Y + L   IP    + +LRS  
Sbjct: 120 ARGYLLALAWGIPPALLFQVLRSFL 144

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 36  PLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQA 95
           P     + Q LL  V T  VGHLG + LA++++ +S+  +  F+ L G   A   L  QA
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSV-FMFLFSILMGLGTATTALVAQA 59

Query: 96  YGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQ-NPQISVEARNYAIWLI 154
            GA  YQ++G     ++   + + LP+ ++  F    L+ L   + +++  A++Y   LI
Sbjct: 60  VGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILI 119

Query: 155 PALFGYAILRSLCHNLQAQS 174
             +  Y +   L   L+ Q 
Sbjct: 120 LGIPAYLLNFVLRGFLRGQG 139

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 5/153 (3%)

Query: 19  TRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGF 78
               F + LK +  LA P+    + Q L   V T MVGHLG  +LA++ +A  +  +   
Sbjct: 8   LEGPFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-I 66

Query: 79  TPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLH 137
               G       L  QA GA   +K        +   + + L +++L   F + +L LL 
Sbjct: 67  AIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLG 126

Query: 138 QNPQISVEARNYA---IWLIPALFGYAILRSLC 167
              ++   A  Y    +   P      +L  + 
Sbjct: 127 APAEVLELAAEYLRIILLGAPFALLSFVLSGIL 159

Length = 455

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 28  KKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACA 87
           +++  LA P+    + Q L+  V   MVG LG  ++A++ +AT +  +            
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLL-LVLNMALGTG 59

Query: 88  LETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEA 146
              L  Q+YGA  Y++       ++   + + LP+++L  +F + +L LL  +P++   A
Sbjct: 60  TVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALA 119

Query: 147 RNY---AIWLIPALF----GYAILRS 165
             Y    +  IP  F    G A LR 
Sbjct: 120 LTYLRIVLLGIPFFFLSLVGNAALRG 145

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 27  LKKVNFLAAPLARVTVFQLLLPTVSTMMVGH-LGKLSLASITIATSLTN-VTGFTPLFGF 84
           LK +   A PL    + Q L   V  ++VG  LG  +LA+++  + +   +T      G 
Sbjct: 2   LKTLLLFALPLLLSNLLQQLYNLVDLLIVGQFLGVAALAAVSNGSPIIFLLTAI--GMGL 59

Query: 85  ACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQIS 143
           +     L  Q  GA+  +K      + +   + + + +++L  +F   IL L++   +I 
Sbjct: 60  SMGGTILISQYIGAKDEEKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEIL 119

Query: 144 VEARNYA---IWLIPALFGY----AILRSL 166
             A +Y       IP +FGY    AILR L
Sbjct: 120 ELAVSYLRICFLGIPFIFGYNAYSAILRGL 149

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 2/151 (1%)

Query: 34  AAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCG 93
           AAPL    + Q L   V T  +G L   +LA++ +A  L          G +     L  
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIA-LLIALGVGLSVGTSALIS 59

Query: 94  QAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIW 152
           QA GA   +K       ++   I + L ++ L   F   IL LL    ++   A  Y   
Sbjct: 60  QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTI 119

Query: 153 LIPALFGYAILRSLCHNLQAQSLILTLFLSS 183
           LI  L    +   L   LQ +    T  + S
Sbjct: 120 LILGLPITFLGAVLSGILQGEGDTRTAMIIS 150

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 11/156 (7%)

Query: 33  LAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLC 92
           LA P+    + Q+LL T+ T M+      ++A++ +A  +  +         +     L 
Sbjct: 8   LAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFL-LILIFSFISTGTSILI 66

Query: 93  GQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNY-- 149
            Q  GA+  +K       A+ F + + L  S+L   F  ++L L+   P++      Y  
Sbjct: 67  AQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALGSTYLR 126

Query: 150 ----AIWLIPALFGY-AILRSLCHNLQAQSLILTLF 180
               +++L        AILRS  H      + ++L 
Sbjct: 127 IVGGSLFLQALSLTLSAILRS--HGRTKIPMYVSLI 160

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 49  TVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYT 108
            + T+ V  LG ++LA+  IA  + +   F P FG A A+  L GQ  GA  Y++     
Sbjct: 262 LLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGNYKRARRAA 320

Query: 109 YSAMFFCIAICLPIS-VLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAI 162
             A+   + I L I+ +L +F + I+ L   +P++   A    +          I
Sbjct: 321 RLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGI 375

Length = 455

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 33  LAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLC 92
           +A PL    + Q ++       +G L +++LA+   A  +         FG +  ++   
Sbjct: 10  IALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPA-GVLYFAILMLFFGLSSGVQVFV 68

Query: 93  GQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILM-LLHQNPQISVEARNYAI 151
            Q  GA +Y +IG   +  ++F + +   +++L      +L  LL  +P++      Y  
Sbjct: 69  AQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEVQALEVEYFR 128

Query: 152 WLIPALF 158
             I    
Sbjct: 129 IRILGAP 135

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 19  TRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGF 78
             + +  E +++  LA P+    V Q  +  V T+M G +    LA++ I TS+  +   
Sbjct: 3   ETQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIW-LPVI 61

Query: 79  TPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPI-SVLWIFMDKILMLLH 137
               G   AL  +  Q  GA + ++I       ++  + + + I  VL+  +  IL +++
Sbjct: 62  LFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMN 121

Query: 138 QNPQISVEARNY---AIWLIPALFGYAILRSLC 167
             P+++  A  Y    +W IPA   Y +LRS  
Sbjct: 122 LEPEVADIAVGYLHALLWGIPAYLLYQVLRSFI 154

Length = 456

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 53.6 bits (130), Expect = 6e-09
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 25  QELKKVNFLAAPLARVTVFQLLLPTVS----TMMVGHLGKLSLASITIATSLTNVTGFTP 80
           + LK++  +  P A     Q  L ++S      +V   G ++ A+  IA  + +   F P
Sbjct: 222 EILKEILKIGLPSA----LQQSLVSISFLIINSIVNSYGVVASAAYGIANKINSFA-FLP 276

Query: 81  LFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQN 139
                 A+ T   Q  GA + ++      + +   + I L I +L + F  ++L L   +
Sbjct: 277 PSAIGQAVSTFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSD 336

Query: 140 PQISVEARNYAIWLIPALFGYAIL 163
           P++      Y          + IL
Sbjct: 337 PEVIEIGAEYLRIYSIDYILFGIL 360

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 49  TVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYT 108
           TV  +++G LG   LA+  I  S+ ++  F P+ G   A+ +L GQA GA +       T
Sbjct: 252 TVFFLLIGRLGTTELAATNIVFSINSL-AFLPMIGLGIAVSSLVGQALGAGRPDLAMRVT 310

Query: 109 YSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWL 153
              +   +A  L + +L++   ++L+ +             A+ L
Sbjct: 311 RRGLKLALAYMLLLGILFLLFPELLLSIFTPGADFALIAELAVPL 355

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 37  LARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY 96
             R            T +   LG + LA+  I      ++ +  L GFA A E L G+A 
Sbjct: 235 FIRTLALLAAF-LFFTALAARLGDVILAANQILLQFWLLSSYF-LDGFAYAAEALVGRAL 292

Query: 97  GAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIP 155
           GA   +         + + + + + +++L ++  + I+ L   +P +   A  Y  WL  
Sbjct: 293 GAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLAL 352

Query: 156 ALF 158
              
Sbjct: 353 LPP 355

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 50.6 bits (122), Expect = 8e-08
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 49  TVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACAL--ETLCGQAYGAEQYQKIGT 106
           TV T  +  LG  +LA+ T A+   N++ F  LF  A     + + G   GA  + +   
Sbjct: 249 TVITAFIARLGTAALAARTYAS---NISMFVFLFSLAIGQATQIIVGHLVGAGDFDEAYK 305

Query: 107 YTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRS 165
               ++   + + L +++L  +F + IL L   +P+I          L+         R+
Sbjct: 306 RVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEI----IALGKTLLLISILLEPGRA 361

Query: 166 L 166
            
Sbjct: 362 F 362

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 50  VSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTY 109
           V   +V   G  +LA+  I   + ++  F P FGF+ A  TL GQ  GA    +   Y  
Sbjct: 248 VLLAIVASYGTAALAAYQIGLRIESLA-FMPGFGFSMAASTLVGQNLGAGDPDEARRYGK 306

Query: 110 SAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAI 162
            A+   +     + +L +IF   +  L   +P++      Y   +  +    AI
Sbjct: 307 RALRLGVLFMGLLGLLLFIFAPPLASLFTPDPEVIELGVLYLRIVALSQPFLAI 360

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 30/143 (20%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 21  RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTP 80
           +A ++  K    L  PL        +       ++  +G+L+L   T+   + N+    P
Sbjct: 221 KANIRPYKFTIKLGLPLGGEEFLWNIGNLAVIRILNRIGELALGIYTLVFGIENI-VLMP 279

Query: 81  LFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWI-FMDKILMLLHQN 139
           ++G++ A  TL G++ G +  ++        +   + I +  +++++ F  KIL L   +
Sbjct: 280 MYGYSSAALTLVGESIGKKDLKEALRIGNICLGLGLLIYIAAAIVFLAFPYKILSLFTND 339

Query: 140 PQISVEARNYAIWLIPALFGYAI 162
           P++   +  Y I++I  LF  +I
Sbjct: 340 PELINYSIPYLIFIIIILFFKSI 362

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 41  TVFQLLLPTVSTMMV----GHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY 96
            +   LL     ++V       G  +LA+ T+A  + ++  F P  G A A   + GQ  
Sbjct: 229 AIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLA-FMPALGLAQAALPVVGQNL 287

Query: 97  GAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIP 155
           GA  + +    T+ A+   + I   + +L  +F + IL L   +P+    A +Y   L  
Sbjct: 288 GAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLELAVSYLRILAI 347

Query: 156 ALFGYAI 162
                 I
Sbjct: 348 YYLFVGI 354

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 77  GFTPLFGFACALETLCGQAYGAEQYQKIGT-YTYSAMF-FCIAICLPISVLWIFMDKILM 134
              PL G A A+ ++ G AYGA  Y+K+ T Y YS      I + + I +++IF  +I  
Sbjct: 279 AIIPLIGIATAVTSVTGAAYGARNYEKLKTAYNYSIKLGLIIELIIAI-LIFIFAPQIAY 337

Query: 135 LLHQNPQISVEARNYAIWL 153
           L   + + +  A     +L
Sbjct: 338 LFTYSEESAHLAPEIVAFL 356

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 441

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 33  LAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLC 92
           L  P+A   + + L   +  ++V  LG ++LA+  IA ++ ++  F P FGF  A+  L 
Sbjct: 221 LGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILV 279

Query: 93  GQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDK-ILMLLHQNPQISVEARNYAI 151
           GQA GA   ++       A+   + + L ++++ I   + I  L   +P++   A  Y I
Sbjct: 280 GQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLI 339

Query: 152 WLI 154
           ++ 
Sbjct: 340 FVA 342

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 54  MVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMF 113
           ++G+ G + +A+  I T +     F PL G +  L+ + G  YGA  Y ++      A+ 
Sbjct: 253 LLGYGGDIGVAAFGIVTRILTFL-FLPLIGLSQGLQPIIGYNYGAGNYDRVKQALKLALI 311

Query: 114 FCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAIL 163
             +   L + + L +F ++I+ L   +P++   A       + A     I 
Sbjct: 312 VALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILRIFLLAFPLAGIN 362

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 33  LAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTN-VTGFTPLFGFACALET 90
            A P     +   L   V  + VGH  G L+LA++ +   +   +     + G   A  +
Sbjct: 9   FALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVGGA--S 66

Query: 91  LCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNY 149
           L  +  GA   +K      +A+   + + L +++L  +F+D +L LL  + ++   A +Y
Sbjct: 67  LISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLPYAVDY 126

Query: 150 AIWLIPALF 158
              ++    
Sbjct: 127 LRIILLGAP 135

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 9/128 (7%)

Query: 46  LLPTVSTMMVGHLGKLS-LASITIATSLTNVTGFTPLFGFACALET-LCGQAYGAEQYQK 103
           LL  V T +VGHLG  + L ++ + T++ N      LFGF     T L  QA GA   ++
Sbjct: 21  LLGLVDTAVVGHLGSAAYLGAVALGTTIFNT--LFWLFGFLRMGTTGLVAQALGAGDREE 78

Query: 104 IGTYTYSAMFFCIAICLPISVLWI-FMDKILMLLHQNPQISVEARNY---AIWLIPA-LF 158
                  A+   +AI L + +L    +   L+LL  +  ++  AR Y    I   PA L 
Sbjct: 79  AIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAVAALARQYLRIRILGAPAVLL 138

Query: 159 GYAILRSL 166
            Y      
Sbjct: 139 NYVATGWF 146

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 27  LKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFAC 86
           LKK+  +  P +     + L  TV T +V   G + +A+  I   + ++  F P FG A 
Sbjct: 236 LKKIFRIGLPSSIEQSARALGFTVMTALVAGFGTVVVAAYGIGNRIISLV-FLPAFGLAR 294

Query: 87  ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVE 145
           A  T+ GQ  GA Q  +       A      I +   VL ++F + I+ +   +P++  E
Sbjct: 295 ATSTMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDPEVIKE 354

Query: 146 ARNYAIWLIPALFGYAILR 164
             ++   + P+   + + +
Sbjct: 355 GADFLRIVAPSFPFFGLFQ 373

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 27  LKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFAC 86
           L+ +  LA P+    + Q+      T  +G LG  ++A+ +I+  L      +   G   
Sbjct: 10  LRTLLKLAWPIIVSNLLQVAYNLADTFWLGRLGADAVAAPSISWPLI-FLFISLGGGLTV 68

Query: 87  ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFM--DKILMLLHQNPQISV 144
           A   L  Q  GA  Y K          F I + L ++VL   +    +L+L+    ++  
Sbjct: 69  AGTALVAQYTGAGDYDKANKVAGQTFSFVIILSLILAVLGYILSRPLLLLLIGAPEEVYP 128

Query: 145 EARNYA---IWLIPALFGYAILRSL 166
            A  Y       +P +F + +  SL
Sbjct: 129 LALAYLRIIFLGLPFMFIFFVFNSL 153

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 28  KKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTN-VTGFTPLFGFAC 86
           KK+N +A PL    +   L   V    +G +     +++   T+  N +TGF  L   + 
Sbjct: 1   KKINHIAIPLILQNLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPFNTITGF--LGSISI 58

Query: 87  ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQ-NPQISVE 145
               L  Q+ GA+  ++I  Y  S++ +   I + + +LW+F  +I+ +L   + QI   
Sbjct: 59  GFTILGSQSVGAKDIKRINDYAISSIVYNSIIGVILFLLWLFGARIIFVLFGVDGQILGY 118

Query: 146 ARNY 149
           + NY
Sbjct: 119 SINY 122

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 27  LKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFAC 86
           +K++  L  P+A  ++   L+  +   ++   G +++A+  + + + +++  T   GF+ 
Sbjct: 230 IKEILKLGLPVALQSILFALISMILARIIASFGPVAIAAQKVGSQIESISWMT-AEGFST 288

Query: 87  ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFM-DKILMLLHQNPQISVE 145
           AL    GQ YGA +Y +I     +A+    AI L  ++L  F  + +  L   +P+    
Sbjct: 289 ALAAFVGQNYGAGKYDRIRKGYKTALKIASAIGLFATLLLFFFGEPLFSLFIPDPETIAI 348

Query: 146 ARNYAIWL 153
             +Y   L
Sbjct: 349 GVDYLRIL 356

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 42  VFQLLLPTVS----TMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYG 97
           + Q L+ + S      ++   G  +LA  TIA  +       P +G + A  TL GQ  G
Sbjct: 249 ILQFLIASSSWIFLVRIIAEFGSTALAGYTIAIRIIMFALL-PAWGLSNAAATLVGQNLG 307

Query: 98  AEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLL 136
           A Q  +     + A  + +     +S+++    + L+  
Sbjct: 308 AGQPDRAEKSVWRAGKYNMVFLGIVSLVFFLFAEPLVSF 346

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 37  LARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY 96
              V++F         +++G LG   LA+  IA +  ++    PL G + A     G A 
Sbjct: 243 FFEVSLF-----AAVALLMGRLGTTVLAAHQIALNFASLLFMVPL-GISMAATVRVGFAL 296

Query: 97  GAEQYQKIGTYTYSAMFFCIAI-CLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIP 155
           GA             +   +    L   +L +F ++I  L   +P          I L  
Sbjct: 297 GAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDPA--------VIALAA 348

Query: 156 ALFGYAIL 163
           +L  +A L
Sbjct: 349 SLLVFAAL 356

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 32  FLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETL 91
            LA P+    V + L   V    V  LG L++A++ +  S+  +  ++   G + A   L
Sbjct: 18  LLAIPMVLEMVMESLFAVVDLYFVSRLGALAIATVGLTESVLTIV-YSIAIGLSMAATAL 76

Query: 92  CGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYA 150
             +  G +  +  G     A+   +A+ L +S+L + F + IL L+  +P +  E   Y 
Sbjct: 77  VARRIGEKDPEGAGFAAVQAILLGVALSLILSILGYFFAEDILSLMGASPAVIAEGYGYT 136

Query: 151 IWL 153
             +
Sbjct: 137 RIM 139

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 78  FTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLL 136
           F P+FG    L  +    YGA    +I      A+   + I L   +L  +F D++L L 
Sbjct: 282 FMPVFGLNNGLIPIVAYNYGAGNKDRIREAIKYAILIAVVIMLAGGLLFQLFPDQLLGLF 341

Query: 137 HQNPQI 142
           + + ++
Sbjct: 342 NASEEM 347

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.95
PRK00187	464	multidrug efflux protein NorA; Provisional	99.94
PRK10189	478	MATE family multidrug exporter; Provisional	99.94
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.94
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.93
PRK00187	464	multidrug efflux protein NorA; Provisional	99.93
PRK01766	456	multidrug efflux protein; Reviewed	99.92
PRK01766	456	multidrug efflux protein; Reviewed	99.92
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.92
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.92
PRK10189	478	MATE family multidrug exporter; Provisional	99.92
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.9
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.88
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.85
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.83
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.78
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.76
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.73
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.72
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.69
PRK15099	416	O-antigen translocase; Provisional	99.64
PRK10459	492	colanic acid exporter; Provisional	99.61
COG2244	480	RfbX Membrane protein involved in the export of O-	99.57
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.56
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.51
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.41
PRK15099	416	O-antigen translocase; Provisional	99.19
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.87
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.71
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.22
PRK10459	492	colanic acid exporter; Provisional	98.13
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.1
COG2244	480	RfbX Membrane protein involved in the export of O-	98.01
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	97.97
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	97.84
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.78
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.38
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	96.95

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.95  E-value=5.1e-26  Score=184.61  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089           23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ  102 (183)
Q Consensus        23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  102 (183)
                      +++.+|+++++++|.+++++...+++++|+.++||+|++++||.++++++..++ +.+..|++.|..+++||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            457899999999999999999999999999999999999999999999999975 8899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          103 KIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      ++++..++++.++++++++.++ .+.++++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.||+|.+|+
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            9999999999999999988887 688999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 047089          182 S  182 (183)
Q Consensus       182 ~  182 (183)
                      +
T Consensus       171 ~  171 (455)
T COG0534         171 I  171 (455)
T ss_pred             H
Confidence            5

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.94  E-value=1.8e-25  Score=182.20  Aligned_cols=160  Identities=23%  Similarity=0.233  Sum_probs=151.9

Q ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      ++++.+|+++++++|.+++++...+...+|+.+++|+|++++|+++++.++.++. ..+..|++++.++++||++|+||+
T Consensus         4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence            3567899999999999999999999999999999999999999999999999965 888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          102 QKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      ++++++.++++.++++++++..++..+.++++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999999887655779999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q 047089          182 S  182 (183)
Q Consensus       182 ~  182 (183)
                      .
T Consensus       163 ~  163 (464)
T PRK00187        163 I  163 (464)
T ss_pred             H
Confidence            5

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.94  E-value=1.7e-24  Score=176.86  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=149.6

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089           25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI  104 (183)
Q Consensus        25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~  104 (183)
                      +.+|+++++++|.++++++..+...+|+.++|++|++++|+++++.++.++ .+.+..|++++.++++||++|+||+|++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~  104 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRA  104 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            459999999999999999999999999999999999999999999999996 4889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          105 GTYTYSAMFFCIAICLPISV-LWIFMDKILMLLH--QNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      ++..++++.+++.++++.++ .+.++++++++++  .|+|+.+.+.+|+++..++.|+..+..++.+++||.||++.+++
T Consensus       105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  184 (478)
T PRK10189        105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL  184 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence            99999999999999999988 5778999999994  79999999999999999999999999999999999999999987


Q ss_pred             c
Q 047089          182 S  182 (183)
Q Consensus       182 ~  182 (183)
                      +
T Consensus       185 i  185 (478)
T PRK10189        185 I  185 (478)
T ss_pred             H
Confidence            5

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.94  E-value=1.5e-24  Score=176.10  Aligned_cols=165  Identities=24%  Similarity=0.257  Sum_probs=157.5

Q ss_pred             hhhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 047089           17 AVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY   96 (183)
Q Consensus        17 ~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~   96 (183)
                      .+.++.+++.+|+++++++|.+++++.+......-+.+++++|++.+|+++++.++.++. +++..|++++.+++++|++
T Consensus       230 ~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~  308 (455)
T COG0534         230 KKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNL  308 (455)
T ss_pred             hhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            334466779999999999999999999999999999999999999999999999999975 9999999999999999999


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc
Q 047089           97 GAEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSL  175 (183)
Q Consensus        97 g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  175 (183)
                      |+||+|++++..+.+..++.++++...+ ++.+++++.++|..|+|+.+.+..++++.....++.+.+.+..+++||.||
T Consensus       309 Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~  388 (455)
T COG0534         309 GAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGD  388 (455)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999998 688999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcc
Q 047089          176 ILTLFLS  182 (183)
Q Consensus       176 ~~~~~~~  182 (183)
                      +|.++++
T Consensus       389 ~~~~~~~  395 (455)
T COG0534         389 AKIPFII  395 (455)
T ss_pred             cHHHHHH
Confidence            9999875

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.93  E-value=2.7e-24  Score=174.14  Aligned_cols=158  Identities=18%  Similarity=0.158  Sum_probs=149.8

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089           24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ  102 (183)
Q Consensus        24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  102 (183)
                      .+..|+++++++|.+++++...+.+.+|+.++||+ |++++|+.+++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            35689999999999999999999999999999999 788999999999999965 8899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          103 KIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      ++++..++++.++++++++..+ ...+.++++++++.|+|+.+.+.+|+++.+++.|+..+..++.+++|+.||+|.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            9999999999999999999887 477889999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q 047089          182 S  182 (183)
Q Consensus       182 ~  182 (183)
                      .
T Consensus       164 ~  164 (441)
T PRK10367        164 L  164 (441)
T ss_pred             H
Confidence            5

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.93  E-value=2.7e-24  Score=175.26  Aligned_cols=161  Identities=20%  Similarity=0.224  Sum_probs=151.3

Q ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089           21 RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ  100 (183)
Q Consensus        21 ~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~  100 (183)
                      +.+++.+|+++++++|.+++++.+.....+|+.+++++|++++|+++++.++..+ .+.+..|++++.++++||++|+||
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~  307 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGR  307 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4566789999999999999999999999999999999999999999999999996 588999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC--Ch---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 047089          101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQ--NP---QISVEARNYAIWLIPALFGYAILRSLCHNLQAQS  174 (183)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g  174 (183)
                      +|++++..+.++.++.+++++.++ ++.+++++.++|..  |+   |+.+.+..|+++.+++.++.+++.++.+++||.|
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G  387 (464)
T PRK00187        308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK  387 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence            999999999999999999999888 57899999999953  43   7899999999999999999999999999999999


Q ss_pred             chhhhhcc
Q 047089          175 LILTLFLS  182 (183)
Q Consensus       175 ~~~~~~~~  182 (183)
                      |+|.++++
T Consensus       388 ~~~~~~~~  395 (464)
T PRK00187        388 DARTTFLI  395 (464)
T ss_pred             ccHHHHHH
Confidence            99999875

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.92  E-value=1e-23  Score=171.50  Aligned_cols=160  Identities=21%  Similarity=0.303  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      .+++.+|+++++++|.+++++.+.+...+++.+++++|++++|+++++.++.++. +.+..|++.+.++.+||++|+||+
T Consensus       233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~  311 (456)
T PRK01766        233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT  311 (456)
T ss_pred             CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence            4567899999999999999999999999999999999999999999999999965 889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      +++++..+.++.+++.++++.++ ++.+++++.++|+.|+|+.+.+..|+++..+..++.+++.+..+++||.||++.++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  391 (456)
T PRK01766        312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF  391 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence            99999999999999999999888 57899999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 047089          181 LS  182 (183)
Q Consensus       181 ~~  182 (183)
                      +.
T Consensus       392 ~~  393 (456)
T PRK01766        392 FI  393 (456)
T ss_pred             HH
Confidence            65

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.92  E-value=3.2e-23  Score=168.60  Aligned_cols=160  Identities=20%  Similarity=0.251  Sum_probs=151.1

Q ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      .+++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++..+ ...+..|++.+..|.+||++|++|+
T Consensus         6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~~   84 (456)
T PRK01766          6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGRR   84 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            446789999999999999999999999999999999999999999999999875 4778999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      +++++..++++.+++++++++++ ++.++++++.+++.|+++.+.+..|+++.+++.++..+..++++++|+.|+++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (456)
T PRK01766         85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM  164 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            99999999999999999999888 57788999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 047089          181 LS  182 (183)
Q Consensus       181 ~~  182 (183)
                      +.
T Consensus       165 ~~  166 (456)
T PRK01766        165 VI  166 (456)
T ss_pred             HH
Confidence            64

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.92  E-value=3.2e-23  Score=168.52  Aligned_cols=158  Identities=16%  Similarity=0.091  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089           24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ  102 (183)
Q Consensus        24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  102 (183)
                      ++.+|+++++++|.++++++..++..+|+.++|++ |++++++++++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus         8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   86 (453)
T PRK09575          8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE   86 (453)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence            45789999999999999999999999999999997 999999999999999964 7789999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          103 KIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      ++++..+++++++++++++.++ ++.++++++++++.|+++.+.+.+|+++..++.++..+.....+++|+.|+++.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  166 (453)
T PRK09575         87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG  166 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            9999999999999999999988 577999999999999999999999999999999999999999999999999999886


Q ss_pred             c
Q 047089          182 S  182 (183)
Q Consensus       182 ~  182 (183)
                      .
T Consensus       167 ~  167 (453)
T PRK09575        167 L  167 (453)
T ss_pred             H
Confidence            4

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.92  E-value=3.1e-23  Score=168.61  Aligned_cols=162  Identities=15%  Similarity=0.128  Sum_probs=151.8

Q ss_pred             hhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Q 047089           20 RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGK-LSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGA   98 (183)
Q Consensus        20 ~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~-~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~   98 (183)
                      ++.+++.+|+++++++|..+++....+...+.+.+++++|+ +++|+++++.++.++ .+.+..|++.+.++++||++|+
T Consensus       226 ~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga  304 (453)
T PRK09575        226 LRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGA  304 (453)
T ss_pred             CCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcC
Confidence            34567789999999999999999999999999999999985 689999999999996 4889999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccch
Q 047089           99 EQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQ-NPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLI  176 (183)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  176 (183)
                      ||+||+++..++++.+++..+++.++ ++.+++++.++|+. |+|+.+.+..|+++.+++.++.+++.+..+++||.||+
T Consensus       305 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~  384 (453)
T PRK09575        305 RQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQG  384 (453)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999998 57799999999985 78999999999999999999999999999999999999


Q ss_pred             hhhhcc
Q 047089          177 LTLFLS  182 (183)
Q Consensus       177 ~~~~~~  182 (183)
                      +.+++.
T Consensus       385 ~~~~~~  390 (453)
T PRK09575        385 GKALFI  390 (453)
T ss_pred             HHHHHH
Confidence            998864

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.92  E-value=4.4e-23  Score=168.57  Aligned_cols=160  Identities=14%  Similarity=0.034  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      .+++.+|+++++++|..++++...+...+.+.+++++|++++|+++++.++.++. +.+..|++++.++++||++|+||.
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~  331 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI  331 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence            3568899999999999999999999999999999999999999999999999964 889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      +++|+..+.+..+++++++.+++ ++.+++++.++|..|+|+.+.+..++++.+...++.+++.+..+.+||.||++.++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~  411 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM  411 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence            99999999999999999999998 57899999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 047089          181 LS  182 (183)
Q Consensus       181 ~~  182 (183)
                      ++
T Consensus       412 ~i  413 (478)
T PRK10189        412 WV  413 (478)
T ss_pred             HH
Confidence            64

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.90  E-value=1.3e-21  Score=158.48  Aligned_cols=157  Identities=22%  Similarity=0.180  Sum_probs=140.6

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089           25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI  104 (183)
Q Consensus        25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~  104 (183)
                      +.+|++++++.|..++++.......+-+.+++++|++++|+++++.++.++. +.+..|+++|.++++||++|+||+|++
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999964 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc---chhhhh
Q 047089          105 GTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQS---LILTLF  180 (183)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~  180 (183)
                      |+..+.+..++..+++..++ ++.+++++.++|.+|+|+.+.+..++++.+...+........+++++|.+   |+|.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~  387 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            99999999999999999998 57799999999999999999999999999876443334545555555555   599988


Q ss_pred             cc
Q 047089          181 LS  182 (183)
Q Consensus       181 ~~  182 (183)
                      ++
T Consensus       388 ~~  389 (441)
T PRK10367        388 AV  389 (441)
T ss_pred             HH
Confidence            75

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.88  E-value=5.6e-24  Score=150.10  Aligned_cols=146  Identities=27%  Similarity=0.404  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Q 047089           36 PLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFC  115 (183)
Q Consensus        36 p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~  115 (183)
                      |.+++++...+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.+||++|++|+|++++..++++.++
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence            89999999999999999999999999999999999999964 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089          116 IAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS  182 (183)
Q Consensus       116 ~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  182 (183)
                      ..++++.++ .+.+++++.++++.|+|+.+.+..|+++..+..++..+.....+++||.||++.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  147 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYI  147 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence            999999999 4889999999999999999999999999999999999999999999999999998764

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.85  E-value=1.9e-19  Score=147.89  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=148.0

Q ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089           21 RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ  100 (183)
Q Consensus        21 ~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~  100 (183)
                      +.+++.+|++++.+.|..++++...+...+|+.+.+.+|++++++++.+.++.+++...+..+++++..|.+||++|+||
T Consensus       216 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~  295 (502)
T TIGR01695       216 NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN  295 (502)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34557899999999999999999999999999997777999999999999999876444678999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc
Q 047089          101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQ----NPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSL  175 (183)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  175 (183)
                      ++++++.++++..+...+++|.++ ++.+++++..++..    |+|..+.+..++++++++.++.++..+..+.+++.||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~  375 (502)
T TIGR01695       296 WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKD  375 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence            999999999999999999999998 68899999998865    5678889999999999999999999999999999999


Q ss_pred             hhhhhcc
Q 047089          176 ILTLFLS  182 (183)
Q Consensus       176 ~~~~~~~  182 (183)
                      +|.+++.
T Consensus       376 ~~~~~~~  382 (502)
T TIGR01695       376 TRTPFIN  382 (502)
T ss_pred             CccCHHH
Confidence            9988764

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.83  E-value=1.4e-18  Score=136.18  Aligned_cols=146  Identities=28%  Similarity=0.433  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Q 047089           36 PLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFC  115 (183)
Q Consensus        36 p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~  115 (183)
                      |.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..|.++|++|+||+|++++..+++..+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999885 488999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089          116 IAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS  182 (183)
Q Consensus       116 ~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  182 (183)
                      ..++++.++ ++.+++++.++++.|++..+.+..|++++++..++..+..+..+++|+.||++.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYI  147 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            999999998 5779999999998888999999999999999999999999999999999999988754

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.78  E-value=2.2e-17  Score=129.40  Aligned_cols=133  Identities=26%  Similarity=0.416  Sum_probs=124.6

Q ss_pred             hhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcc
Q 047089           20 RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAE   99 (183)
Q Consensus        20 ~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~   99 (183)
                      ++.+++.+|++++.++|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++.+..|.+++++|+|
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~  286 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG  286 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence            445677899999999999999999999999999999999999999999999999964 8899999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 047089          100 QYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWL  153 (183)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~  153 (183)
                      |+++.++..++++++.+.++++.++ +..+++++.++++.|+++.+.+..++.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998 67899999999999999999999998764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.76  E-value=1.2e-16  Score=129.97  Aligned_cols=165  Identities=16%  Similarity=0.069  Sum_probs=153.4

Q ss_pred             hhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 047089           18 VTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYG   97 (183)
Q Consensus        18 ~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g   97 (183)
                      +.+....+..|+.++...|..++.....+...+|+.+.+.+++..+++++.+.++.+++...+..+++++..|..|+...
T Consensus       188 ~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~  267 (451)
T PF03023_consen  188 PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAA  267 (451)
T ss_pred             ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444456799999999999999999999999999999999999999999999999998778888999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 047089           98 AEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLH----QNPQISVEARNYAIWLIPALFGYAILRSLCHNLQA  172 (183)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~  172 (183)
                      +||.++.++..++++...+.+.+|.++ ++.+++++.+++.    .|.|-.+.....+.+++++.|+.+++..+...+.+
T Consensus       268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya  347 (451)
T PF03023_consen  268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA  347 (451)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 6889999998773    67888999999999999999999999999999999


Q ss_pred             ccchhhhhcc
Q 047089          173 QSLILTLFLS  182 (183)
Q Consensus       173 ~g~~~~~~~~  182 (183)
                      .||+|.+++.
T Consensus       348 ~~~~~~~~~~  357 (451)
T PF03023_consen  348 LGDTKTPVRI  357 (451)
T ss_pred             ccCcHhHHHH
Confidence            9999999865

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.73  E-value=5.4e-16  Score=126.12  Aligned_cols=166  Identities=13%  Similarity=0.040  Sum_probs=154.5

Q ss_pred             hhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 047089           18 VTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYG   97 (183)
Q Consensus        18 ~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g   97 (183)
                      +++..+.+..|++.+...|..++..+.++...+|+.+.+.+.+.+++.+.+++++++++.-.+..++++.+.|..|++..
T Consensus       222 p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~  301 (518)
T COG0728         222 PRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA  301 (518)
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            44444557999999999999999999999999999999999999999999999999999878999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc----CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 047089           98 AEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLL----HQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQA  172 (183)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~----~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~  172 (183)
                      ++|.++.++..+++++++.++++|.++ +.++++|+.+.+    .++++-...+...+..+..+.+++.+..++...+++
T Consensus       302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA  381 (518)
T COG0728         302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA  381 (518)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 688999999876    356777888999999999999999999999999999


Q ss_pred             ccchhhhhccC
Q 047089          173 QSLILTLFLSS  183 (183)
Q Consensus       173 ~g~~~~~~~~s  183 (183)
                      .+|+|.|++++
T Consensus       382 r~d~ktP~~i~  392 (518)
T COG0728         382 REDTKTPMKIA  392 (518)
T ss_pred             ccCCCcChHHH
Confidence            99999999753

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.72  E-value=5.6e-16  Score=126.91  Aligned_cols=156  Identities=19%  Similarity=0.141  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc----C---hHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHH
Q 047089           22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL----G---KLSLASI----TIATSLTNVTGFTPLFGFACALET   90 (183)
Q Consensus        22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~----g---~~~~aa~----~~~~~~~~~~~~~~~~gl~~~~~~   90 (183)
                      .+++.+|++++.++|.+++++...+...+|+.++++.    |   .++.+.+    +++.++.+++ ..+..+++.+..|
T Consensus       219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p  297 (488)
T TIGR02900       219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP  297 (488)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999875    2   1222333    3455677765 5678899999999


Q ss_pred             HHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 047089           91 LCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHN  169 (183)
Q Consensus        91 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~  169 (183)
                      .+||++|+||+++.++..++++.++..+++|.++ +..++++++.++..++    .+..++++.++..++..+.....++
T Consensus       298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~  373 (488)
T TIGR02900       298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI  373 (488)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998 6789999999887554    3678999999999999999999999


Q ss_pred             Hhhccchhhhhcc
Q 047089          170 LQAQSLILTLFLS  182 (183)
Q Consensus       170 l~~~g~~~~~~~~  182 (183)
                      +++.||+|.+++.
T Consensus       374 l~~~g~~~~~~~~  386 (488)
T TIGR02900       374 LQGLGKQKVALRN  386 (488)
T ss_pred             HHhcCcchHHHHH
Confidence            9999999998764

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.69  E-value=9.2e-16  Score=124.79  Aligned_cols=159  Identities=44%  Similarity=0.665  Sum_probs=153.0

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhh
Q 047089           24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQK  103 (183)
Q Consensus        24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~  103 (183)
                      .++.|++++++.|.++..+.......++..++||.|+.++|+.+++.+..+...+.+..|+..+..++++|++|+++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            57889999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089          104 IGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS  182 (183)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  182 (183)
                      ...+.+++..+-...++|.++++.+.++++..+++|+++...+..|.++..+..+.+........++|+.+++.+..++
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~  182 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI  182 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988776653

>PRK15099 O-antigen translocase; Provisional

Probab=99.64  E-value=4.6e-14  Score=113.76  Aligned_cols=156  Identities=11%  Similarity=0.014  Sum_probs=131.9

Q ss_pred             hhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Q 047089           20 RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVG-HLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGA   98 (183)
Q Consensus        20 ~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~-~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~   98 (183)
                      ++.+++.+|++++.+.|..++++...+...+|+.+++ ++|++++++|+.+.++.+.+...+..+++++..|.++++   
T Consensus       207 ~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---  283 (416)
T PRK15099        207 PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---  283 (416)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3456788999999999999999999999999999997 779999999999999977444678999999999999995   


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchh
Q 047089           99 EQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLIL  177 (183)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~  177 (183)
                      +|++|.++..++.......++++.++ +..++++++.++.+|+-  +.+.+++++.+++.++...+......+-..++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~--~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~  361 (416)
T PRK15099        284 TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKF--TAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLR  361 (416)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999988 57899999999877751  2467788888888888777777666666666665


Q ss_pred             hhh
Q 047089          178 TLF  180 (183)
Q Consensus       178 ~~~  180 (183)
                      ..+
T Consensus       362 ~~~  364 (416)
T PRK15099        362 FYI  364 (416)
T ss_pred             HHH
Confidence            443

>PRK10459 colanic acid exporter; Provisional

Probab=99.61  E-value=5.9e-14  Score=115.32  Aligned_cols=156  Identities=12%  Similarity=0.051  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089           22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ  100 (183)
Q Consensus        22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~  100 (183)
                      .+++.+|++++.+.|.+.+++...+...+|+.++|++ |+++++.|+.+.++.+.+...+...++....|..|+.  ++|
T Consensus       201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~  278 (492)
T PRK10459        201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD  278 (492)
T ss_pred             ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence            3457789999999999999999999999999999998 9999999999999998765555666788899999986  678


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhh
Q 047089          101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL  179 (183)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  179 (183)
                      .++.++.+++...+...+++|.++ +..++++++.++.+++  ...+...++++++..++..+.......+++.||+|..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~  356 (492)
T PRK10459        279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS  356 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence            899999999999999999999998 6778999998776654  3568899999999999999999999999999999987


Q ss_pred             hc
Q 047089          180 FL  181 (183)
Q Consensus       180 ~~  181 (183)
                      +.
T Consensus       357 ~~  358 (492)
T PRK10459        357 FK  358 (492)
T ss_pred             HH
Confidence            64

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.57  E-value=1.3e-13  Score=112.82  Aligned_cols=157  Identities=17%  Similarity=0.194  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      .++.++++++.++|..++.....+...+|+.+++++ |+++++.|+.+.++... ...+..+++.+..|..++.+.++|.
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~  286 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR  286 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            368999999999999999999999999999999998 99999999988888885 4878999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      ++.++..+++..+...+++|..+ +..+++++..++.+++..  .+...+.++++..++..+.......+++.|+++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            99999999999999999999999 688999999877666532  388999999999999999999999999999999876


Q ss_pred             cc
Q 047089          181 LS  182 (183)
Q Consensus       181 ~~  182 (183)
                      +.
T Consensus       365 ~~  366 (480)
T COG2244         365 LI  366 (480)
T ss_pred             HH
Confidence            54

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.56  E-value=4.1e-13  Score=110.07  Aligned_cols=147  Identities=12%  Similarity=0.082  Sum_probs=129.5

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHH
Q 047089           31 NFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTY  109 (183)
Q Consensus        31 ~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~  109 (183)
                      +|-+.|.++++++..+..++|..+++|+ |+++.++++.+.++.++.......|++++....+||+.|++|+++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            4668999999999999999999999996 999999999999998865333446999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          110 SAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       110 ~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      .++.+.++.+++.++ +..+.+++...+..|++.    ..++++.++..++..+.....+++|+.+|.|..+.
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAY  150 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHH
Confidence            999999999999888 567888888877666653    35788899999999999999999999999998765

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.51  E-value=2.3e-12  Score=106.02  Aligned_cols=151  Identities=13%  Similarity=0.061  Sum_probs=121.9

Q ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCccchhhHHH
Q 047089           30 VNFLAAPLARVTVFQLLLPTVSTMMVGH-LGKLSL-ASITIATSLTNVTGFTPL-FGFACALETLCGQAYGAEQYQKIGT  106 (183)
Q Consensus        30 i~~~~~p~~l~~~~~~~~~~~d~~~~~~-~g~~~~-aa~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~  106 (183)
                      ++|-+.-.++++++..+..++|..++++ +|+++. ++++++.++.++...... .|++++..+...++.+++  |+.++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~   79 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR   79 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence            4677788899999999999999999999 599999 799999999875423223 357777777666554333  67888


Q ss_pred             HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089          107 YTYSAMFFCIAICLPI-SV-LWIFMDKILMLL--HQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS  182 (183)
Q Consensus       107 ~~~~~~~~~~~~~l~~-~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  182 (183)
                      ...+++.....+.... ++ .+.+++++..++  +.|++..+.+..|+++..++.++..+..+..+++|+.||.+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence            8888777776555544 44 467889998888  5677888999999999999999999999999999999999988764

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.41  E-value=1.8e-11  Score=99.85  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLG--KLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g--~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      .+.+++++++++|..++.+.+++...+-....|.++  ..++++.++........ +++..|++.+.++.+++.+|++|.
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p  321 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP  321 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence            789999999999999999999999999999999996  46889999999998864 889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      +++|.....+...++.++...+. ++...+.+...|+.|+|+.+...+...+++...+..+.+.++++..+|.|+.+...
T Consensus       322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga  401 (473)
T KOG1347|consen  322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA  401 (473)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence            99999999999999999999988 68899999999999999999999999999999999999999999999999988765


Q ss_pred             cc
Q 047089          181 LS  182 (183)
Q Consensus       181 ~~  182 (183)
                      ++
T Consensus       402 ~v  403 (473)
T KOG1347|consen  402 VI  403 (473)
T ss_pred             EE
Confidence            54

>PRK15099 O-antigen translocase; Provisional

Probab=99.19  E-value=8.8e-10  Score=88.94  Aligned_cols=146  Identities=12%  Similarity=0.015  Sum_probs=120.0

Q ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHH
Q 047089           30 VNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYT  108 (183)
Q Consensus        30 i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~  108 (183)
                      +.|-+.....++.+..+..++-..++.++ |+++.+..+...++..+.......|++++....++|+  ++|+++.++.+
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            34555666777777887888888888887 9999999999998888664545888888889999988  68899999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          109 YSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       109 ~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      +.++.+++..++..++ ++.+.+++...+..+++.    ..++.+..+..++..+.....+.+|+.||++.++.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~  150 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNAL  150 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888 577889999888777652    35666666667777888999999999999998775

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.87  E-value=2.1e-07  Score=76.08  Aligned_cols=124  Identities=15%  Similarity=0.143  Sum_probs=107.8

Q ss_pred             ccChH-HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 047089           57 HLGKL-SLASITIATSLTNVTGFTPL-FGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKIL  133 (183)
Q Consensus        57 ~~g~~-~~aa~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~  133 (183)
                      .+|.+ ..++|.++.++-+++...+. .++.++..|..++.. ++|.++.++..+..+.+...+.+.+++ .+++++++.
T Consensus         4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv   82 (451)
T PF03023_consen    4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIV   82 (451)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34644 56799999999997633343 468999999999999 899999999999999999999999888 588999999


Q ss_pred             HHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089          134 MLL--HQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL  181 (183)
Q Consensus       134 ~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  181 (183)
                      .++  +.|++..+.+.+++++..+..++.++..+..+++|+.+|...+..
T Consensus        83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~  132 (451)
T PF03023_consen   83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPAL  132 (451)
T ss_pred             HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHH
Confidence            988  678899999999999999999999999999999999999887654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.71  E-value=3.8e-06  Score=69.19  Aligned_cols=155  Identities=14%  Similarity=0.078  Sum_probs=122.8

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChH-HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCccchhh
Q 047089           27 LKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKL-SLASITIATSLTNVTGFTPL-FGFACALETLCGQAYGAEQYQK  103 (183)
Q Consensus        27 ~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~-~~aa~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~  103 (183)
                      -..++|-+.-....++++.+..++-..+++.+ |.+ ..+|+.+++++-+++-..+. .+++++..|...++..+++.++
T Consensus         6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~   85 (518)
T COG0728           6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA   85 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence            34566677777888888999999988888776 885 56799999999997633333 2478999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CC--ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhh
Q 047089          104 IGTYTYSAMFFCIAICLPISVL-WIFMDKILMLL-HQ--NPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL  179 (183)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  179 (183)
                      .++..+....+...+.+.++++ .++++++.+.. +.  |++....+....++..|..++.++.....+++++.++...+
T Consensus        86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~  165 (518)
T COG0728          86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP  165 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence            8888888887777777777775 67888888444 32  34444468888899999999999999999999999998776


Q ss_pred             hc
Q 047089          180 FL  181 (183)
Q Consensus       180 ~~  181 (183)
                      .+
T Consensus       166 a~  167 (518)
T COG0728         166 AF  167 (518)
T ss_pred             hh
Confidence            54

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.22  E-value=1.8e-05  Score=59.65  Aligned_cols=73  Identities=14%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 047089           23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY   96 (183)
Q Consensus        23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~   96 (183)
                      +++..|++++.+.|..++.+...+....|..+++++ |+++++.|+.+.++...+ ..+...+.+...|..+|.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence            368999999999999999999999999999999998 999999999999999975 7788999999999999863

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=98.13  E-value=0.00019  Score=59.29  Aligned_cols=139  Identities=16%  Similarity=0.107  Sum_probs=99.0

Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHH
Q 047089           28 KKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGT  106 (183)
Q Consensus        28 ~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~  106 (183)
                      ++..+-+....+++....+..++-...++++ |+++.+.++.+..+..+.......|++.+..    |.   +|  +-++
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~--~~~~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QD--ISHL   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---cc--CCHH
Confidence            4566777778888888999999988888887 9999999999999988654445567777552    21   11  1234


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          107 YTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       107 ~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      ..+....+....++..+++ +.+.+++...++ +++    ....+.+..+..++..+.....+.+|+.++.+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a  145 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLA  145 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence            4556667777777776664 556666665544 444    23567777888888888888899999988877543

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.10  E-value=0.00077  Score=50.66  Aligned_cols=140  Identities=11%  Similarity=0.089  Sum_probs=90.3

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHH
Q 047089           31 NFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTY  109 (183)
Q Consensus        31 ~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~  109 (183)
                      +|-+.-..++++...+..++-..++.++ |+++.+.++...++.++.......|++++.....++...+  .++.+.+..
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            3455667778888888888888888887 9999999999999998764445788888888888877543  344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          110 SAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      .......+.++........    ...+..++.    ...+........++.........++++.++.+...
T Consensus        80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILLI----ASFFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIA  142 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333333332222    123333332    22233333333367888888999999988777543

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.01  E-value=0.00021  Score=58.81  Aligned_cols=145  Identities=16%  Similarity=0.110  Sum_probs=109.9

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089           26 ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI  104 (183)
Q Consensus        26 ~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~  104 (183)
                      ..++..|-+.-...++++..+..++-...+++. |+++.+.++.+.++..++......|+..+..-.++++.+++++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~   83 (480)
T COG2244           4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL   83 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence            345666777777888888888888888888887 9999999999999999875555689999999999998877776666


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          105 GTY-TYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       105 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      +.. ...+.......+++.........+.      ++    .....+.+.....+.........+++|+.++.+...
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (480)
T COG2244          84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLA  150 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            666 6666655555555555543333332      22    344567788999999999999999999999887654

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=97.97  E-value=0.00023  Score=59.60  Aligned_cols=152  Identities=9%  Similarity=-0.033  Sum_probs=128.5

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHhc--c-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch--
Q 047089           27 LKKVNFLAAPLARVTVFQLLLPTVSTMMVGH--L-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY--  101 (183)
Q Consensus        27 ~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~--~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~--  101 (183)
                      -++.+++......+.+.-.+..--|..++..  + ..++-+.|++++++-++.+-.+...+-.+.-...+|...+++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            5788889999999999999999999999988  6 7889999999999999888888888999999999998876543  


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q 047089          102 -------QKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQ  173 (183)
Q Consensus       102 -------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~  173 (183)
                             ++..+.....+++...+++....+ ....+.++.+++++.-....+...++++|+.+|+.++|.+.-++.++.
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~  411 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV  411 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence                   446677778888888888877774 667888888886665555567889999999999999999999999998


Q ss_pred             cchhh
Q 047089          174 SLILT  178 (183)
Q Consensus       174 g~~~~  178 (183)
                      .+++.
T Consensus       412 a~~~~  416 (549)
T PF04506_consen  412 ASESQ  416 (549)
T ss_pred             CCHHH
Confidence            76653

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=97.84  E-value=0.0041  Score=48.15  Aligned_cols=145  Identities=14%  Similarity=0.060  Sum_probs=104.1

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc--Ch-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089           25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL--GK-LSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY  101 (183)
Q Consensus        25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~--g~-~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  101 (183)
                      ..++++.+.-+|..++.....+...+.+.-+++-  .+ +.+|+|+++..+.-++ ..+...+-+....++-+     +.
T Consensus         8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~s-----~r   81 (345)
T PF07260_consen    8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVNS-----KR   81 (345)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhcc-----hh
Confidence            5788999999999999999999999999999874  33 3489999999998865 66777777766665543     22


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccch
Q 047089          102 QKIGTYTYSAMFFCIAICLPISVL-WI-FMDKIL-MLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLI  176 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  176 (183)
                      +|.+-.... ...+........++ +- +..+++ ..++.++++.+.+...+.++....++.++.....|++--..++
T Consensus        82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s  158 (345)
T PF07260_consen   82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS  158 (345)
T ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence            222222222 22222222222332 22 556666 4779999999999999999999999999999999988744443

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.78  E-value=0.0043  Score=46.18  Aligned_cols=121  Identities=13%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 047089           47 LPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL  125 (183)
Q Consensus        47 ~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (183)
                      .+++-..+++|. |+++.+.++....+..+.......|+......     ..++|+++.++..+.......+.++...++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777776 99999999999999886533335555555433     234666677777777766655555544442


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089          126 WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF  180 (183)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  180 (183)
                      .   ..+...+ .+++    ...++....+..++........+.+++.+|.+...
T Consensus        78 ~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (251)
T PF13440_consen   78 A---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYA  124 (251)
T ss_pred             H---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            1   1111233 3332    34466677788888999999999999999987654

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.38  E-value=0.002  Score=47.96  Aligned_cols=67  Identities=12%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 047089           29 KVNFLAAPLARVTVFQLLLPTVSTMMVGH-LGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQA   95 (183)
Q Consensus        29 ~i~~~~~p~~l~~~~~~~~~~~d~~~~~~-~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~   95 (183)
                      +.++.+.|..++++.......+|..+++. +|+++++.|+.+.++...+...+..++++...|.+||.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999999999999999 69999999999999999763278999999999998873

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.95  E-value=0.021  Score=46.36  Aligned_cols=151  Identities=9%  Similarity=-0.043  Sum_probs=111.9

Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089           28 KKVNFLAAPLARVTVFQLLLPTVSTMMVGHL---GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI  104 (183)
Q Consensus        28 ~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~---g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~  104 (183)
                      ++..+...-..-+.+.-.+..--|.+++.-.   +-++-|.|.+++++-++.+-.+.-.+--..-...+|-...++.|+.
T Consensus       239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~  318 (530)
T KOG2864|consen  239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV  318 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence            4445555555666666677777788887643   4456778888888888777777777888888888888877766655


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhh
Q 047089          105 GT---YTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILT  178 (183)
Q Consensus       105 ~~---~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~  178 (183)
                      ++   +....+.+...+++.++++ ...++.++.++++++-....+...++++|..+|+.++|.+.-++..+.++.+.
T Consensus       319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q  396 (530)
T KOG2864|consen  319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ  396 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence            55   4556666666667666664 55778888888877666666778999999999999999999999999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-28
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	9e-09

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  109 bits (274), Expect = 1e-28
 Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 23  FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLF 82
           + +E   +  LA P+   +V Q  +  V T+M G +  + +A+++IA S+          
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGV 65

Query: 83  GFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQI 142
           G   AL  +  Q  GA +  KI    +  +   + + +PI  +      I+  +     +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 143 SVEARNYAIWLIPALFGYAILRSLCHNLQAQSL 175
           + +   Y   +I A+  Y + ++L       SL
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL 158

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 14  KKWAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLT 73
           K +    +   +EL ++  L  P+A    F++ L  V  ++V  LG   +A+  +A + +
Sbjct: 224 KVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFS 283

Query: 74  NVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAI-CLPISVLWIFMDKI 132
           ++  F        A+    G   G +  +         +   +A  C+   +  +F ++I
Sbjct: 284 SLV-FMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQI 342

Query: 133 LMLLHQNPQI 142
            +L  +N  +
Sbjct: 343 ALLYTENQVV 352

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.87
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.84

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.87  E-value=3.1e-22  Score=160.86  Aligned_cols=161  Identities=16%  Similarity=0.213  Sum_probs=152.8

Q ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089           21 RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ  100 (183)
Q Consensus        21 ~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~  100 (183)
                      +.+++.+|++++.++|.+++++...+...+|+.+++++|++++++|+++.++.+++ ..+..+++++..|.+++++|+||
T Consensus       231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~  309 (460)
T 3mkt_A          231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD  309 (460)
T ss_dssp             SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567899999999999999999999999999999999999999999999999976 78999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhh
Q 047089          101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL  179 (183)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  179 (183)
                      +++.++..+++..++..++++.++ ++.+++++..++..|++..+.+..++++++++.++.+++.+..+++++.||+|.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  389 (460)
T 3mkt_A          310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI  389 (460)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            999999999999999999999998 6889999999999898999999999999999999999999999999999999998


Q ss_pred             hcc
Q 047089          180 FLS  182 (183)
Q Consensus       180 ~~~  182 (183)
                      ++.
T Consensus       390 ~~~  392 (460)
T 3mkt_A          390 FHR  392 (460)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.84  E-value=5.1e-21  Score=153.78  Aligned_cols=159  Identities=20%  Similarity=0.254  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089           23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ  102 (183)
Q Consensus        23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  102 (183)
                      .++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..+.++|++|++|++
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~   85 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence            357899999999999999999999999999999999999999999999998854 7788999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089          103 KIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS  182 (183)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  182 (183)
                      +.++.+++++.+..+++++.++++.+.++++.+++.|++..+.+..|+++.+++.++..+.....+++|+.||++.+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999998777778899999999999999999999999999999999999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00