Citrus Sinensis ID: 047120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
Protein Sequence
MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHccccccccEEEHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcHHccccccccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEEcccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccccHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEcHHHHHHEccccccHHHHHHHHHHHHcccccEEEEEEEccc
Coil and Loop (DISEMBL)
mfvsanynqpcnstQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAsfssspctplteFARYIFFKYHafrekkdpfLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLrkvafgsdlFLQNCLISLYVRCGYLEFARQLFDkmgirdsvsyNSMIDGYVKSGNIESARELFdsmpirernliSWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLhgcvkcgkmDDAQAlfdkmpkrdvvSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMmggyvrngysmkALEIFDNMqcelylhpddASLVIVLSAIAQLGHIDKGVAIHRYlekdqfslngkHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMErlsiepdditfTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLiedmpmepnDVIWRTLLSACRnyenlnvgepvakhligmdssnssSYVLLSNMFAGLGMWNDARRVRSMMKernlkklpgcswieleGVVHEffvrdksrlqVRDIYYMLdnmwtpdsvatscthyg
Flexible Loop (DISEMBL)
mfvsanynqpcnstQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLfdempkrdVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKErnlkklpgcswIELEGVVHEffvrdksrlqVRDIYYMldnmwtpdsvatscthyg
Low Complexity Region (SEG)
MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDssnsssyvllsnMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG
Disordered region (IsUnstruct)
**************QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVAT******
Disordered Region (DISOPRED)
M*************QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHY*
Disordered Region (DISEMBL)
********QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSV********
Disordered Region (DISPRO)
MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	634	2.2.26 [Sep-21-2011]
O22137	613	Pentatricopeptide repeat-	yes	no	0.930	0.962	0.654	0.0
Q9SJZ3	681	Pentatricopeptide repeat-	no	no	0.938	0.873	0.386	1e-116
O82380	738	Pentatricopeptide repeat-	no	no	0.952	0.818	0.358	1e-113
Q9LS72	600	Pentatricopeptide repeat-	no	no	0.883	0.933	0.355	1e-106
Q9LSB8	687	Putative pentatricopeptid	no	no	0.943	0.870	0.356	1e-104
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.922	0.839	0.350	1e-102
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.832	0.676	0.377	1e-102
Q9LN01	741	Pentatricopeptide repeat-	no	no	0.914	0.782	0.332	1e-102
P0C8Q5	578	Pentatricopeptide repeat-	no	no	0.888	0.974	0.342	2e-99
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.938	0.7	0.339	5e-96

>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/594 (65%), Positives = 480/594 (80%), Gaps = 4/594 (0%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  ST+ +L  CKT +DVNQIH R+I TG IKN++LTT++V +F+SS    L +FAR +F
Sbjct: 11  SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 70

Query: 73  FKYH----AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
            +YH    +F E +DPFLWNA+IK++SHG DP++AL++ CLML+NGVSVDKFS SLVLKA
Sbjct: 71  HEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA 130

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CSRLG ++ G+QIHG L+K    SDLFLQNCLI LY++CG L  +RQ+FD+M  RDSVSY
Sbjct: 131 CSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSY 190

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           NSMIDGYVK G I SARELFD MP+  +NLISWNS+++GYAQ   G+  A ++F  MPE+
Sbjct: 191 NSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEK 250

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+MP
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP 310

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVVA N+MM GYV+N Y M+ALEIF +M+ E +L PDD +LVIVL AIAQLG + K +
Sbjct: 311 HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAI 370

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DHWNAMI GLAIHG
Sbjct: 371 DMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHG 430

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LGE AFD+L+++ERLS++PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHY
Sbjct: 431 LGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 490

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    GE VAKHLI    
Sbjct: 491 GCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 550

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
            N SSYVLLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 551 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604

Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor to recruit C-deaminase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/619 (38%), Positives = 354/619 (57%), Gaps = 24/619 (3%)

Query: 12  NSTQSTLL------LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           NST S +L      LL KCK L  + QI A+MI  G I +   +++L+A  + S      
Sbjct: 45  NSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSE----- 99

Query: 66  EFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV---SVDKF 120
             +RY+ +     +  ++P  F WN  I+ +S   +PKE+ +++  ML +G      D F
Sbjct: 100 --SRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +  ++ K C+ L L   G  I G + K+       + N  I ++  CG +E AR++FD+ 
Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217

Query: 181 GIRDSVSYNSMIDGYVKSGNIESA---RELFDSMPIR--ERNLISWNSVLNGYAQLKSGL 235
            +RD VS+N +I+GY K G  E A    +L +S  ++  +  +I   S  +    L  G 
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           +F   + E      +   N+++    KCG + +A+ +FD + KR +VSW  MI GYA+ G
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +D++R+LFD+M ++DVV  NAM+GG V+      AL +F  MQ      PD+ +++  L
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTS-NTKPDEITMIHCL 396

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SA +QLG +D G+ IHRY+EK   SLN   G +L+DMY+KCG+I  A+ VF  I+  +  
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSL 456

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            + A+I GLA+HG    A     EM    I PD+ITF GLL+AC H G+++ G   F  M
Sbjct: 457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM 516

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           +    L P+L+HY  MVD+LGRAG +E A  L+E MPME +  +W  LL  CR + N+ +
Sbjct: 517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           GE  AK L+ +D S+S  YVLL  M+    MW DA+R R MM ER ++K+PGCS IE+ G
Sbjct: 577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG 636

Query: 596 VVHEFFVRDKSRLQVRDIY 614
           +V EF VRDKSR +   IY
Sbjct: 637 IVCEFIVRDKSRPESEKIY 655

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  410 bits (1055), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/619 (35%), Positives = 359/619 (57%), Gaps = 15/619 (2%)

Query: 5   ANYNQPCNSTQST--LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           +N NQP  + + +  + L+ +C +L  + Q H  MI TG   + +  +KL A  + S   
Sbjct: 19  SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFA 78

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFS 121
            L E+AR +F +      K + F WN +I+ Y+ G DP  ++  F  M+ ++    +K++
Sbjct: 79  SL-EYARKVFDEI----PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
              ++KA + +  +  G  +HG+  K A GSD+F+ N LI  Y  CG L+ A ++F  + 
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAW 239
            +D VS+NSMI+G+V+ G+ + A ELF  M   +   + ++   VL+  A++++ L+F  
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN-LEFGR 252

Query: 240 QIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           Q+   + E     +L   N+ML    KCG ++DA+ LFD M ++D V+W  M+DGYA   
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
             + AR + + MP++D+VA NA++  Y +NG   +AL +F  +Q +  +  +  +LV  L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SA AQ+G ++ G  IH Y++K    +N     ALI MYSKCG +E + +VF  +E   V 
Sbjct: 373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF 432

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W+AMI GLA+HG G  A D+  +M+  +++P+ +TFT +  AC+H GLV E    F  M
Sbjct: 433 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
              + + PE +HY C+VD+LGR+G++E A   IE MP+ P+  +W  LL AC+ + NLN+
Sbjct: 493 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E     L+ ++  N  ++VLLSN++A LG W +   +R  M+   LKK PGCS IE++G
Sbjct: 553 AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDG 612

Query: 596 VVHEFFVRDKSRLQVRDIY 614
           ++HEF   D +      +Y
Sbjct: 613 MIHEFLSGDNAHPMSEKVY 631

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 338/608 (55%), Gaps = 48/608 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L KC  LN V Q+HA++I     ++ H+  KL+++ S           R        F +
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALS---------LCRQTNLAVRVFNQ 76

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            ++P   L N++I+ ++    P +A  +F  M   G+  D F+   +LKACS    +   
Sbjct: 77  VQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVV 136

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H  + K+   SD+++ N LI  Y RCG L          G+RD              
Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGL----------GVRD-------------- 172

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSML 257
                A +LF+ M   ER+ +SWNS+L G   +K+G L+ A ++F++MP+RDLISWN+ML
Sbjct: 173 -----AMKLFEKM--SERDTVSWNSMLGGL--VKAGELRDARRLFDEMPQRDLISWNTML 223

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP--KRDVVAC 315
            G  +C +M  A  LF+KMP+R+ VSW+ M+ GY+K G +++AR +FD+MP   ++VV  
Sbjct: 224 DGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTW 283

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
             ++ GY   G   +A  + D M     L  D A+++ +L+A  + G +  G+ IH  L+
Sbjct: 284 TIIIAGYAEKGLLKEADRLVDQMVAS-GLKFDAAAVISILAACTESGLLSLGMRIHSILK 342

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +     N     AL+DMY+KCG+++ A  VF  I    +  WN M++GL +HG G+ A +
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L   M R  I PD +TF  +L +C HAGL+ EG+  F  M +++ L P+++HYGC+VD+L
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLL 462

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G ++ A  +++ MPMEPN VIW  LL ACR +  +++ + V  +L+ +D  +  +Y 
Sbjct: 463 GRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYS 522

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN++A    W     +RS MK   ++K  G S +ELE  +HEF V DKS  +   IY 
Sbjct: 523 LLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQ 582

Query: 616 MLDNMWTP 623
           ML ++  P
Sbjct: 583 MLGSLIEP 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/620 (35%), Positives = 339/620 (54%), Gaps = 22/620 (3%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L  CKT +   Q+H++ IT G   N     KL   + S           ++ + Y  F 
Sbjct: 40  ILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCS-------RLGGHVSYAYKLFV 92

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR-LGLIE 136
           +  +P   +WN +IK +S      E + ++  ML  GV+ D  +   +L    R  G + 
Sbjct: 93  KIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALA 152

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  + K   GS+L++QN L+ +Y  CG ++ AR +FD+    D  S+N MI GY 
Sbjct: 153 CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 197 KSGNIESARELFDSMPIRERNLISWNSV-----LNGYAQLKSG---LQFAWQIFEKMPER 248
           +    E + EL   M   ERNL+S  SV     L+  +++K      +    + E   E 
Sbjct: 213 RMKEYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            L   N++++    CG+MD A  +F  M  RDV+SW +++ GY + G + +AR  FD+MP
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP 329

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RD ++   M+ GY+R G   ++LEIF  MQ    + PD+ ++V VL+A A LG ++ G 
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGE 388

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            I  Y++K++   +   G ALIDMY KCG  E A KVF  ++      W AM+ GLA +G
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNG 448

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G+ A  +  +M+ +SI+PDDIT+ G+L+AC H+G+V +    F  MR  H++EP L HY
Sbjct: 449 QGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVD+LGRAG ++ A  ++  MPM PN ++W  LL A R + +  + E  AK ++ ++ 
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEP 568

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N + Y LL N++AG   W D R VR  + +  +KK PG S IE+ G  HEF   DKS L
Sbjct: 569 DNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHL 628

Query: 609 QVRDIYYMLDNMWTPDSVAT 628
           Q  +IY  L+ +    + A 
Sbjct: 629 QSEEIYMKLEELAQESTFAA 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/628 (35%), Positives = 351/628 (55%), Gaps = 43/628 (6%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA------------ 77
           V  +HA +I +GF     +  +L+ ++S   C  L E  R +F K               
Sbjct: 39  VRYVHASVIKSGFSNEIFIQNRLIDAYSK--CGSL-EDGRQVFDKMPQRNIYTWNSVVTG 95

Query: 78  -------------FRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
                        FR   ++D   WN+++  ++     +EAL  F +M   G  ++++S 
Sbjct: 96  LTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSF 155

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           + VL ACS L  + +G+Q+H L+ K  F SD+++ + L+ +Y +CG +  A+++FD+MG 
Sbjct: 156 ASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLNGYAQL---KSGLQF 237
           R+ VS+NS+I  + ++G    A ++F  M     E + ++  SV++  A L   K G + 
Sbjct: 216 RNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEV 275

Query: 238 AWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
             ++ +    R D+I  N+ +    KC ++ +A+ +FD MP R+V++  +MI GYA    
Sbjct: 276 HGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS 335

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
              AR +F +M +R+VV+ NA++ GY +NG + +AL +F  ++ E  + P   S   +L 
Sbjct: 336 TKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE-SVCPTHYSFANILK 394

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSKCGSIENAIKVFEQIE 410
           A A L  +  G+  H ++ K  F            G +LIDMY KCG +E    VF ++ 
Sbjct: 395 ACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           +     WNAMI G A +G G  A +L  EM     +PD IT  G+L+AC HAG V+EG  
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRH 514

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  M R   + P   HY CMVD+LGRAG +E A+++IE+MPM+P+ VIW +LL+AC+ +
Sbjct: 515 YFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ +G+ VA+ L+ ++ SNS  YVLLSNM+A LG W D   VR  M++  + K PGCSW
Sbjct: 575 RNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSW 634

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           I+++G  H F V+DKS  + + I+ +LD
Sbjct: 635 IKIQGHDHVFMVKDKSHPRKKQIHSLLD 662

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 318/540 (58%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++  Y+      +A  +F  M +     +  S + +L A  +   +EE   
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEAC- 208

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
              +L K      L   NCL+  +V+   +  ARQ FD M +RD VS+N++I GY +SG 
Sbjct: 209 ---MLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           I+ AR+LFD  P+++  + +W ++++GY Q +  ++ A ++F+KMPER+ +SWN+ML G 
Sbjct: 266 IDEARQLFDESPVQD--VFTWTAMVSGYIQNRM-VEEARELFDKMPERNEVSWNAMLAGY 322

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+  +M+ A+ LFD MP R+V +W  MI GYA+ G++  A+ LFD+MPKRD V+  AM+ 
Sbjct: 323 VQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++G+S +AL +F  M+ E     + +S    LS  A +  ++ G  +H  L K  + 
Sbjct: 383 GYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYE 441

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCGSIE A  +F+++    +  WN MI G + HG GE+A      M
Sbjct: 442 TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESM 501

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +R  ++PDD T   +L+AC+H GLV +G   F  M + + + P  QHY CMVD+LGRAG 
Sbjct: 502 KREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGL 561

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A NL+++MP EP+  IW TLL A R + N  + E  A  +  M+  NS  YVLLSN+
Sbjct: 562 LEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNL 621

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W D  ++R  M+++ +KK+PG SWIE++   H F V D+   +  +I+  L+ +
Sbjct: 622 YASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEEL 681

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/662 (33%), Positives = 361/662 (54%), Gaps = 82/662 (12%)

Query: 2   FVSANYNQPCNSTQS--TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           F+ ++ + P +S ++  +L LL  CKTL  +  IHA+MI  G     +  +KL+     S
Sbjct: 19  FLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILS 78

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
           P      +A  +F       ++ +  +WN + + ++   DP  AL ++  M+  G+  + 
Sbjct: 79  PHFEGLPYAISVFKTI----QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNS 134

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           ++   VLK+C++    +EG QIHG + K+    DL++   LIS+YV              
Sbjct: 135 YTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV-------------- 180

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                            ++G +E A ++FD  P   R+++S+ +++ GYA  +  ++ A 
Sbjct: 181 -----------------QNGRLEDAHKVFDKSP--HRDVVSYTALIKGYAS-RGYIENAQ 220

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------------- 278
           ++F+++P +D++SWN+M+ G  + G   +A  LF  M K                     
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280

Query: 279 -----RDVVSWAN-------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
                R V  W +             +ID Y+K G ++ A  LF+ +P +DV++ N ++G
Sbjct: 281 SIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIG 340

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY       +AL +F  M       P+D +++ +L A A LG ID G  IH Y++K    
Sbjct: 341 GYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399

Query: 381 LNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           +     +  +LIDMY+KCG IE A +VF  I   S+  WNAMI G A+HG  + +FDL  
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS 459

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M ++ I+PDDITF GLL+AC+H+G++  G   F  M + +K+ P+L+HYGCM+D+LG +
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHS 519

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G  + A  +I  M MEP+ VIW +LL AC+ + N+ +GE  A++LI ++  N  SYVLLS
Sbjct: 520 GLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLS 579

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G WN+  + R+++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY ML+
Sbjct: 580 NIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 639

Query: 619 NM 620
            M
Sbjct: 640 EM 641

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1

 Score =  363 bits (933), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/578 (34%), Positives = 319/578 (55%), Gaps = 15/578 (2%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS---FSSSPCTPLTEFARYIFFKY 75
             L++C  L    Q+HA+++   +    HL   LV     F+      +  + + I   +
Sbjct: 8   FFLQRCVVLEQAKQVHAQLVVNRY---NHLEPILVHQTLHFTKEFSRNIVTYVKRILKGF 64

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           +      D F W  +++  S     KE + ++  M ++G+     + + VL+AC ++  +
Sbjct: 65  NG----HDSFSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENM 120

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G  IH    K      +++Q  L+ LY R GY+E A++ FD +  +++VS+NS++ GY
Sbjct: 121 VDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGY 180

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           ++SG ++ AR +FD +P  E++ +SWN +++ YA+ K  +  A  +F  MP +   SWN 
Sbjct: 181 LESGELDEARRVFDKIP--EKDAVSWNLIISSYAK-KGDMGNACSLFSAMPLKSPASWNI 237

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++ G V C +M  A+  FD MP+++ VSW  MI GY KLG V  A  LF  M K+D +  
Sbjct: 238 LIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVY 297

Query: 316 NAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
           +AM+  Y +NG    AL++F  M +   Y+ PD+ +L  V+SA +QLG+   G  +  Y+
Sbjct: 298 DAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYI 357

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            +    ++     +LID+Y K G    A K+F  +       ++AMI G  I+G+   A 
Sbjct: 358 TEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEAN 417

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            L   M    I P+ +TFTGLL+A +H+GLV+EG  CF  M+  H LEP   HYG MVD+
Sbjct: 418 SLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDM 476

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +E A  LI+ MPM+PN  +W  LL A   + N+  GE    H + +++  +   
Sbjct: 477 LGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYL 536

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
             L+ +++ +G W+DAR VR  +KE+ L K  GCSW+E
Sbjct: 537 SHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLGCSWVE 574

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  352 bits (903), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 213/627 (33%), Positives = 335/627 (53%), Gaps = 32/627 (5%)

Query: 19  LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            + + C  ++ V      HA  + TGFI N  +   LVA +S   C  L++ AR +F + 
Sbjct: 132 FVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSR--CRSLSD-ARKVFDEM 188

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGL 134
             +    D   WN+II++Y+    PK AL MF  M +  G   D  +   VL  C+ LG 
Sbjct: 189 SVW----DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G Q+H          ++F+ NCL+ +Y +CG ++ A  +F  M ++D VS+N+M+ G
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSG---LQFAWQIFEKMPERD 249
           Y + G  E A  LF+ M   +   ++++W++ ++GYAQ   G   L    Q+     + +
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-----------MIDGYAKLGRVD 298
            ++  S+L GC   G +   + +     K  +    N           +ID YAK  +VD
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 299 IARRLFDEM-PK-RDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVL 355
            AR +FD + PK RDVV    M+GGY ++G + KALE+   M + +    P+  ++   L
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 356 SAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
            A A L  +  G  IH Y L   Q ++       LIDMY+KCGSI +A  VF+ +   + 
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W +++ G  +HG GE A  +  EM R+  + D +T   +L AC+H+G++ +G+  F  
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M+ +  + P  +HY C+VD+LGRAG + AA  LIE+MPMEP  V+W   LS CR +  + 
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  A+ +  + S++  SY LLSN++A  G W D  R+RS+M+ + +KK PGCSW+E  
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724

Query: 595 GVVHEFFVRDKSRLQVRDIY-YMLDNM 620
                FFV DK+    ++IY  +LD+M
Sbjct: 725 KGTTTFFVGDKTHPHAKEIYQVLLDHM 751

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
225453947	635	PREDICTED: pentatricopeptide repeat-cont	0.996	0.995	0.683	0.0
224129982	643	predicted protein [Populus trichocarpa]	0.996	0.982	0.690	0.0
147798551	690	hypothetical protein VITISV_012899 [Viti	0.965	0.886	0.652	0.0
449432255	638	PREDICTED: pentatricopeptide repeat-cont	0.993	0.987	0.625	0.0
345505208	615	chlororespiratory reduction 4 [Arabis hi	0.949	0.978	0.646	0.0
345505216	617	chlororespiratory reduction 4 [Capsella	0.930	0.956	0.653	0.0
345505230	614	chlororespiratory reduction 4 [Nasturtiu	0.947	0.978	0.653	0.0
345505220	612	chlororespiratory reduction 4 [Draba nem	0.949	0.983	0.639	0.0
345505218	617	chlororespiratory reduction 4 [Crucihima	0.949	0.975	0.633	0.0
345505206	594	chlororespiratory reduction 4, partial [	0.911	0.973	0.654	0.0

>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like [Vitis vinifera]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/635 (68%), Positives = 532/635 (83%), Gaps = 3/635 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M +SA  NQP NST  TL+LL K KTL+DVNQIH+R+ITTGFI N  LTT+++ +FSSS 
Sbjct: 1   MLISATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSS 60

Query: 61  CTPLTEFARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
             PL EFARY+F   H     R++ +PFLWNAIIK++SHG DP+EA V+F LML+NGV V
Sbjct: 61  HKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCV 120

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           DKFS SLVLKACSRLGLI+EG+QIHGLL ++  GSD+FLQNCL+ LY+RCG L  ARQLF
Sbjct: 121 DKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLF 180

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D+M  RDSVS+NSMIDGYVK G ++SARELFD MP+ ++NLISWNS+++GYA+ + GL+ 
Sbjct: 181 DRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRV 240

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           AW++FE+MP+RDLISWNSM+ GCVKCGKM++A  LF++MPKRDVVSWANM+DGYAKLG +
Sbjct: 241 AWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEI 300

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           DIAR LFDEMP+RDV++CNAMM GYV+NG+ M+AL  F +M     L PD+A+L+I LSA
Sbjct: 301 DIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSA 360

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
           IAQLGH D+GVA+H Y+E + FSL+ K GVALIDMY+KCGSI+NA+ VFE I+D S+DHW
Sbjct: 361 IAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHW 420

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NA+I GLAIHGLGE+AF+L MEME+L ++PDDITF G+LNAC HAGLVKEGL+CFELMRR
Sbjct: 421 NAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRR 480

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           +HK+EP+LQHYGCMVDILGRAGH+E A+  +E MP+EPNDV+WRTLLSACRN+EN  +GE
Sbjct: 481 VHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGE 540

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
           PVAKHLI +DS N SSYVLLSN++AG GMWND  R+R MMK+R+LKK+PGCS IELEG V
Sbjct: 541 PVAKHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNV 600

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
           HEFFVRDKS  QVR+IY MLD++   +S    C H
Sbjct: 601 HEFFVRDKSHPQVREIYSMLDSLSALNSEVAYCKH 635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa] gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/640 (69%), Positives = 532/640 (83%), Gaps = 8/640 (1%)

Query: 1   MFVSANYNQ-PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           M +S N NQ P NS   TL+LL+KCK L+D+NQIHAR++TTGFIKNT LTTK++ SFS+S
Sbjct: 1   MLLSGNLNQQPWNSAIPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTS 60

Query: 60  PCTPLTEFARYIFFKYHAFREKKD-------PFLWNAIIKTYSHGLDPKEALVMFCLMLD 112
              PL EFAR+IFF++HAF   +        PFLWNAIIKTYSHG DPKEA+ +  LML+
Sbjct: 61  LHAPLIEFARFIFFRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLE 120

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
           NG   DKF+ SLVLKACSR+GL++EG+QIHGLL+K+ FGSDLFLQNCLIS YV+CG L  
Sbjct: 121 NGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVR 180

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           A Q+FD+M  RDSVSYNSMIDGYVK G I+ AR +FD +P+ ERNLISWNS++ GYAQ +
Sbjct: 181 ASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSE 240

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
            G+  AWQ+F KMPERDLISWNSM+ GCVKCG+M+DAQ LFD+MP RD+VSWANMIDGYA
Sbjct: 241 DGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYA 300

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K GRVDIAR LFDEMP+RDVVA NAMMGGYV+NGY M+AL IF  MQ +     D+A+L+
Sbjct: 301 KNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLL 360

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
           I LSAIAQLGHIDKGVAIHR++E+  FSL+G+ GVALIDMYSKCGSIENA+ VFE I++ 
Sbjct: 361 IALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEK 420

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
           SVDHWNA+I GLAIHGLGELAFD LMEMER+ +EPDDITF GLLNAC HAGLVKEG++CF
Sbjct: 421 SVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCF 480

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
           ELMRR+HK+EP+LQHYGCMVDILGRAGHIE A+N +E+MP EPNDVIWR+LLSAC+ +E+
Sbjct: 481 ELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHES 540

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            NVG+PVA++L+ +DS + SSYVL SNM+AGLG WND R+VR+MMK++NLKK+PGCSWIE
Sbjct: 541 FNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIE 600

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
           LEG V+ FFV+DKS  Q   IY +LD++   DS  + C +
Sbjct: 601 LEGHVYAFFVQDKSHPQFSGIYSILDSLSMTDSEHSYCKN 640

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/625 (65%), Positives = 502/625 (80%), Gaps = 13/625 (2%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           ++P NST  TL+LL K KTL+DVNQIH+R+ITTGFI N  LTT+++ +FSSS   PL EF
Sbjct: 64  HKPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEF 123

Query: 68  ARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           ARY+F   H     R++ +PFLWNAIIK++SHG DP EA  +F LML+NGV VDKFS SL
Sbjct: 124 ARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSL 183

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VLKACSRLGLI+EG+QIHGLL  +  GSD+FLQNCL+ LY+RCG L  ARQLFD+M  RD
Sbjct: 184 VLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRD 243

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           SVS+NSMIDGYVK G ++SARELFD MP+ ++NLISWNS+++GYA+ + GL+ AW++FE+
Sbjct: 244 SVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEE 303

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP+RDLISWNSM+ GCVKCGKM++A  LF+ MPKRDVVSWANM+DGYAKLG +DIAR LF
Sbjct: 304 MPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLF 363

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           DEMP+RDV++CNAMM GYV+NG  M+AL  F +M     L P +A+L+I LSAIAQLGH 
Sbjct: 364 DEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHF 423

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D+GVA+H Y+E + FSL+ K G ALIDMY+KCGSI+NA+          +DHWNA+J GL
Sbjct: 424 DEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL----------IDHWNAIJXGL 473

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           AIHGLGE+AF+L MEME+L ++PBDITF G+LNAC HAGLVKEGL+ F LMR +HK+EP+
Sbjct: 474 AIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPK 533

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           LQHYGCMVDILGRAGH+E  +  +E MP+EPNDV+WRTLLSACRN+EN  +GEPVAKHLI
Sbjct: 534 LQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLI 593

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            +DS N SSYVLLSN++A  GMWND  R+R MMK+R+LKK+PGCS IELEG VHEFFVRD
Sbjct: 594 SVDSYNPSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRD 653

Query: 605 KSRLQVRDIYYMLDNMWTPDSVATS 629
           KS  Q   I  +   + T D   TS
Sbjct: 654 KSHPQRLPIVNISAELGTDDQKLTS 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like [Cucumis sativus] gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like [Cucumis sativus]

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/636 (62%), Positives = 508/636 (79%), Gaps = 6/636 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V AN      ST  TLLLLR C+T NDVNQ+HAR+I TG++KN+ LTTK++ +  SSP
Sbjct: 1   MLVPANSCHLWPSTPPTLLLLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSP 60

Query: 61  CTPLTEFARYIFFKYHAFREKK------DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG 114
             PL EFARY+FF  +A +  +      DPFLWNA+IK+YSHG +P  ALV+FC+ML+NG
Sbjct: 61  HKPLVEFARYVFFTRYAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENG 120

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
             VDKFS SL+LKAC+R+ L+EEG QIHGLL K+  GS+LFL NCLI++Y+RCG +EFAR
Sbjct: 121 FCVDKFSFSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFAR 180

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           Q+FD+M I+DSVSYNSMIDGYVKSG I+ ARELFDSMP+ ++NLISWNS+L G+AQ K G
Sbjct: 181 QVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDG 240

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           +  A ++FEKMPERDL+SWN+++ G  KCG+++ A +LF++MPKRDV+SW+NMIDGYAKL
Sbjct: 241 IGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKL 300

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G + +AR LFDEMP +DVVA N +M GY +NGY  +ALEIF  MQ +  L PD+ +LV+ 
Sbjct: 301 GDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVA 360

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSAI+QLGH++K  ++H Y  ++  S+ GK  VALIDMYSKCGSIENAI +F+ ++   +
Sbjct: 361 LSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGI 420

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
           DHWNAMI+G+A +GLG+LAF +L+EM RLS++PD ITF G+LNACAHAGLVKEGL+CFEL
Sbjct: 421 DHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFEL 480

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           MR++HKLEP+LQHYGCMVDILG+AG +E A   IE+MP+EPND+IWRTLLSAC+N+EN  
Sbjct: 481 MRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFT 540

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE +AKHL+ MDS NSSSYVLLSN++A LG+W+ A +VR MMK++NL K+PGCSWIELE
Sbjct: 541 IGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELE 600

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSC 630
           GVVHEF VRDKS   V +IY +LD     +     C
Sbjct: 601 GVVHEFLVRDKSHPYVSEIYSVLDGFGASNLQVIDC 636

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/606 (64%), Positives = 491/606 (81%), Gaps = 4/606 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V A+ +QP +S   T+ LL  CKT  DV++IHAR  TTGFIKNT+LTT++V +F++S 
Sbjct: 1   MLVFAHSHQPWSSISPTIQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASR 60

Query: 61  CTPLTEFARYIFFKYHAFREK----KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
            + L EFAR +F +YH         +DPFLWNA+IK++SHG++P++AL++F LML NGVS
Sbjct: 61  RSYLAEFARCVFHEYHVSSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVS 120

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           VDKFS SLVLKACSRLG ++EG+Q HG LRK    SDLFLQNCLI LY++CG L FARQ+
Sbjct: 121 VDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQV 180

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD+M  RDSVSYNSMIDGYVK G IESARELFD MP  ++NLISWNS++NGYAQ   G+ 
Sbjct: 181 FDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVD 240

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A  +F++MPE+DLISWNS++ G VK G+++DA+ LFDKMP+RDVV+WA M+DGYAKLG 
Sbjct: 241 IASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGF 300

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+ LFD+MP+RDVVA N+MM GYV+N Y M+A++IF++M+ E +L PD+ +LVIVLS
Sbjct: 301 VHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLS 360

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           AIAQLG + K + +H Y  + +F L GK GVALIDMYSKCGSI+ A+ VFE+IE+ S+DH
Sbjct: 361 AIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDH 420

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI GLAIHGLGE AFD+L+++ER SI+PDDITF G+LNAC+H+GLVKEGLLCFELM+
Sbjct: 421 WNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMK 480

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    G
Sbjct: 481 RKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETG 540

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VAKHLI     N SSYVLLSNM+A LGMW + RRVR+MMKER ++K+PGCSWIEL+G 
Sbjct: 541 ELVAKHLILQAGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGS 600

Query: 597 VHEFFV 602
           VHEFFV
Sbjct: 601 VHEFFV 606

Source: Arabis hirsuta

Species: Arabis hirsuta

Genus: Arabis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/595 (65%), Positives = 481/595 (80%), Gaps = 5/595 (0%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S   T+ LL +CKT  DV++IHAR+ITTG IKN++L+T++V +F++SP   L EFAR +F
Sbjct: 14  SISPTIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVF 73

Query: 73  FKYHAFR-----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
            +YH        E +DPFLWNA+IK++SHG DPK+AL++FCLML+NGVSVDKFS SLVLK
Sbjct: 74  REYHVCSSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLK 133

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACSRLG ++ GLQIHG+LRK    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVS
Sbjct: 134 ACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVS 193

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +NSMIDGYVK G IESARELFD MP   +NLISWNS+++GYAQ   G+  A  +F +MPE
Sbjct: 194 FNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPE 253

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           +DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+M
Sbjct: 254 KDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQM 313

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P RDVV+ N+MM GYV+N Y M+ALEIF +M+ E +L PD+ +LVIVLSAIAQLG + K 
Sbjct: 314 PHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 373

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           + +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DHWNAMI GLAIH
Sbjct: 374 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIH 433

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           GLGE AFD+L+++ER SI+PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQH
Sbjct: 434 GLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 493

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCMVDIL R+G IE A+NLI++MP+EPNDVIWRT L+AC +++    GE V KHLI   
Sbjct: 494 YGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQA 553

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
             N SSYVLLSNM+A  G W D RR+R+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 554 GYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608

Source: Capsella bursa-pastoris

Species: Capsella bursa-pastoris

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/606 (65%), Positives = 484/606 (79%), Gaps = 5/606 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V AN +QPC S  S + L+  CK  NDV +IHAR+ITTGFIKN++LTTK+V +F+ S 
Sbjct: 1   MLVFANSHQPC-SISSIIQLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSR 59

Query: 61  CTPLTEFARYIFFKYH----AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
              L EFARY+F +YH    A  + KDPFLWN +IK++SHG+DP+ AL+ FCLML+NG+S
Sbjct: 60  RPYLAEFARYVFREYHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGIS 119

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           VDKFS SLVLKACSRLG ++ G+QIHG LRK    SDLFLQNCLI LY++CG L FARQ+
Sbjct: 120 VDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQI 179

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD+M  RDSVSYNSMIDGY+K G IESARELFD MP   +NLISWNS+++GYAQ   G+ 
Sbjct: 180 FDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVN 239

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A ++F +MPE+DLISWNS+++G VK G+M+DA+ LF  MP+RDVV+WA MIDGYAKLG 
Sbjct: 240 IASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGF 299

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+ LFD+MP RDVVA N+MM GYV+N + M+ALEIF +M+ E +L PD+ +LVIVLS
Sbjct: 300 VHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLS 359

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           AIAQLG + K + +H Y+ + QF L GK GVALIDMYSKCGSI+ A+ VFE IE+ S+DH
Sbjct: 360 AIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDH 419

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI GLAIHGLGE AF++L+E+ER SIEPD ITF G+LNAC+H+GLVKEGLLCFELMR
Sbjct: 420 WNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMR 479

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R HK+EP LQHYGCMVD+L R G IE A+NLIE+MP+EPNDVIWRT L+AC +++   +G
Sbjct: 480 RKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIG 539

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VAKHLI     N SSYVLLSNM+A  G W D R VR+MMKER L+K+PGCSWIEL+G 
Sbjct: 540 ELVAKHLILQAGYNPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGR 599

Query: 597 VHEFFV 602
           VHEFFV
Sbjct: 600 VHEFFV 605

Source: Nasturtium officinale

Species: Nasturtium officinale

Genus: Nasturtium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/604 (63%), Positives = 487/604 (80%), Gaps = 2/604 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V A+ +QP +S   T+ LL  CK   DVN+IHAR+IT GFIKN +LTT++V  F+ S 
Sbjct: 1   MLVFAHSHQPWSSISPTIKLLGSCKNSEDVNKIHARLITNGFIKNPNLTTRIVLDFADSR 60

Query: 61  CTPLTEFARYIFFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
            + L EFAR++F +YH     + +DPFLWNA+IK++SHGLDP++AL++FCLML+ GVSVD
Sbjct: 61  RSYLAEFARFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVD 120

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           KFS SLVLKACSRLG ++EG+QIHG LRK    SDL+LQNCLI LY++CG L +ARQ+FD
Sbjct: 121 KFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFD 180

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
           +M  RDSVSYNSMIDGYVK G IESAR LFD MP  ++NLISWN +++GYAQ   G+  A
Sbjct: 181 RMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVA 240

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            ++F++MPE+DLISWNS++ G VK G+M+DA++LF+KMPKRDVV+WA M+DGYAKLG V 
Sbjct: 241 KKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVH 300

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A+ LFD MP RDVVA N+M+ GYV+N Y  +A+ IF++M+ E +L PD+ +LVIVLSAI
Sbjct: 301 QAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAI 360

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG + K V IH Y+  ++F L GK GVALID YSKCGSI+ +++VFE+IE+ S+DHWN
Sbjct: 361 AQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWN 420

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           AMI GLAIHGLGE AFD+L+++E+ SI+PDDITF G+LNAC+H+GLVKEGLLCFELMRR 
Sbjct: 421 AMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRK 480

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           HK+EP+LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC N++    GE 
Sbjct: 481 HKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGEL 540

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
           VAKHL      N SS+VLLSNM+A  GMW + RRVR+ MKER L+K+PGCSWIEL+G VH
Sbjct: 541 VAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVH 600

Query: 599 EFFV 602
           EFFV
Sbjct: 601 EFFV 604

Source: Draba nemorosa

Species: Draba nemorosa

Genus: Draba

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/608 (63%), Positives = 489/608 (80%), Gaps = 6/608 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V A+ +QP +S   T+ LL  CK   DVN+IHAR++T GFIKN +LTT++V +F++S 
Sbjct: 1   MLVFAHSHQPWSSISPTIKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASR 60

Query: 61  CTPLTEFARYIFFKY--HAFR----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG 114
                EFAR++F +Y   +F     + +D +LWNA+IK++SHG DP+ AL++FCLML+NG
Sbjct: 61  RPYXVEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENG 120

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
           VSVDKFS SLVLKACSRLGL++EG+QIHG L+K    SDLFLQNCLI LY++CG+L FAR
Sbjct: 121 VSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFAR 180

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           Q+FD+M  RDSVSYNSMIDGYVK G+ ESARELFD MP   +NLISWNS+++GYAQ   G
Sbjct: 181 QIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDG 240

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           +  A ++F +MP++DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+W+ MIDGYAKL
Sbjct: 241 VDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKL 300

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G V  A+ LFD+MP RDVV+ N+M+ GYV+N Y+M+ALEIF +M+ E +L PD+ +LVIV
Sbjct: 301 GFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIV 360

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSAIAQLG + K + +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VF+ IE+ S+
Sbjct: 361 LSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSI 420

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
           DHWNAMI GLAIHGLGE AFD+L+++ER SI+PDDITF GLLNAC+H+GLVKEGLLCFEL
Sbjct: 421 DHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFEL 480

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           MRR HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++   
Sbjct: 481 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFE 540

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
            GE VAKHLI     N SSYVLLSN++A  G W D RR+R++MKER ++K+PGCSWIEL+
Sbjct: 541 TGELVAKHLIWEAGYNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELD 600

Query: 595 GVVHEFFV 602
           G VHEFFV
Sbjct: 601 GRVHEFFV 608

Source: Crucihimalaya wallichii

Species: Crucihimalaya wallichii

Genus: Crucihimalaya

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/582 (65%), Positives = 477/582 (81%), Gaps = 4/582 (0%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH----AFREKKD 83
           +D N++HAR+ITTG IKN +LTT++V +F +S  + L EFAR +F++Y+    +  E +D
Sbjct: 6   DDXNKMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGED 65

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
           P+LWNA+IK+YSHG+DP+ AL++FCLM++NGV VDKFS SLVLKACSRL  ++EG+QIHG
Sbjct: 66  PYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHG 125

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
            LRK    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYVK G ++S
Sbjct: 126 FLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKS 185

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKC 263
           A +LFD MP   +NLISWNS+++GYAQ   GL  A ++F +MPE+DLISWNSM++GCVK 
Sbjct: 186 AHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKH 245

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+M +RDVVACN+MM GYV
Sbjct: 246 GRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYV 305

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +N Y M+ALEIF++M+ + +L PD+ +LVIVLSAIAQLG + K +++H Y+ + +F L G
Sbjct: 306 QNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGG 365

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
           K GVALIDM+SKCGSI++AI VFE IE+ S+DHWNAMI GLAIHGLGELAFD+LM++ER 
Sbjct: 366 KLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERC 425

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
           SI+PD ITF G+LNAC+H+GLVKEGLLCFELMRR H +EP LQHYGC+VD+L R+G IE 
Sbjct: 426 SIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIEL 485

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A++LIEDMPMEPNDVIWR+ LSAC  +E    GE VAKHLI     N SSYVLLSNM+A 
Sbjct: 486 AKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYAS 545

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           LGMW D RRVR MMK+R L K+PGCSWIEL+G VHEFFV+DK
Sbjct: 546 LGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDK 587

Source: Aethionema grandiflorum

Species: Aethionema grandiflorum

Genus: Aethionema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
TAIR|locus:2041198	681	SLO1 "SLOW GROWTH 1" [Arabidop	0.938	0.873	0.381	1.6e-104
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.963	0.824	0.350	3.7e-103
TAIR|locus:2060640	738	OTP81 "ORGANELLE TRANSCRIPT PR	0.952	0.818	0.348	1.8e-101
TAIR|locus:2093920	687	AT3G15930 "AT3G15930" [Arabido	0.946	0.873	0.351	1.3e-93
TAIR|locus:2054131	697	SLO2 "AT2G13600" [Arabidopsis	0.847	0.770	0.358	3.1e-90
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.831	0.674	0.367	4e-90
TAIR|locus:2130354	722	AT4G14820 "AT4G14820" [Arabido	0.949	0.833	0.320	1.2e-88
TAIR|locus:2206164	570	AT1G31430 [Arabidopsis thalian	0.813	0.905	0.355	4.9e-85
TAIR|locus:2094812	600	AT3G29230 "AT3G29230" [Arabido	0.695	0.735	0.378	2.4e-83
TAIR|locus:2154855	620	AT5G66520 "AT5G66520" [Arabido	0.760	0.777	0.373	3.1e-83

TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 236/619 (38%), Positives = 350/619 (56%)

Query:    12 NSTQSTLL------LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
             NST S +L      LL KCK L  + QI A+MI  G I +   +++L+A F    C  L+
Sbjct:    45 NSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIA-F----CA-LS 98

Query:    66 EFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV---DKF 120
             E +RY+ +     +  ++P  F WN  I+ +S   +PKE+ +++  ML +G      D F
Sbjct:    99 E-SRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157

Query:   121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
             +  ++ K C+ L L   G  I G + K+       + N  I ++  CG +E AR++FD+ 
Sbjct:   158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217

Query:   181 GIRDSVSYNSMIDGYVKSGNIESA---RELFDSMPIR--ERNLISWNSVLNGYAQLKSGL 235
              +RD VS+N +I+GY K G  E A    +L +S  ++  +  +I   S  +    L  G 
Sbjct:   218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

Query:   236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             +F   + E      +   N+++    KCG + +A+ +FD + KR +VSW  MI GYA+ G
Sbjct:   278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337

Query:   296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
              +D++R+LFD+M ++DVV  NAM+GG V+      AL +F  MQ      PD+ +++  L
Sbjct:   338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTS-NTKPDEITMIHCL 396

Query:   356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
             SA +QLG +D G+ IHRY+EK   SLN   G +L+DMY+KCG+I  A+ VF  I+  +  
Sbjct:   397 SACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSL 456

Query:   416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
              + A+I GLA+HG    A     EM    I PD+ITF GLL+AC H G+++ G   F  M
Sbjct:   457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM 516

Query:   476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
             +    L P+L+HY  MVD+LGRAG +E A  L+E MPME +  +W  LL  CR + N+ +
Sbjct:   517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576

Query:   536 GEPVAKHLIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
             GE  AK L+ +D            M+    MW DA+R R MM ER ++K+PGCS IE+ G
Sbjct:   577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG 636

Query:   596 VVHEFFVRDKSRLQVRDIY 614
             +V EF VRDKSR +   IY
Sbjct:   637 IVCEFIVRDKSRPESEKIY 655

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 221/631 (35%), Positives = 367/631 (58%)

Query:     2 FVSANYNQPCNSTQS--TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
             F+ ++ + P +S ++  +L LL  CKTL  +  IHA+MI  G     +  +KL+  F   
Sbjct:    19 FLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLI-EFCI- 76

Query:    60 PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
               +P  E   Y    +   +E  +  +WN + + ++   DP  AL ++  M+  G+  + 
Sbjct:    77 -LSPHFEGLPYAISVFKTIQEP-NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNS 134

Query:   120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
             ++   VLK+C++    +EG QIHG + K+    DL++   LIS+YV+ G LE A ++FDK
Sbjct:   135 YTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDK 194

Query:   180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                RD VSY ++I GY   G IE+A++LFD +P+++  ++SWN++++GYA+     + A 
Sbjct:   195 SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD--VVSWNAMISGYAET-GNYKEAL 251

Query:   240 QIFEKMPER----DLISWNSMLHGCVKCGKMDDAQAL---FDKMPKRDVVSWAN-MIDGY 291
             ++F+ M +     D  +  +++  C + G ++  + +    D       +   N +ID Y
Sbjct:   252 ELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLY 311

Query:   292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
             +K G ++ A  LF+ +P +DV++ N ++GGY       +AL +F  M       P+D ++
Sbjct:   312 SKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTM 370

Query:   352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQI 409
             + +L A A LG ID G  IH Y++K    +     +  +LIDMY+KCG IE A +VF  I
Sbjct:   371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430

Query:   410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
                S+  WNAMI G A+HG  + +FDL   M ++ I+PDDITF GLL+AC+H+G++  G 
Sbjct:   431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490

Query:   470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
               F  M + +K+ P+L+HYGCM+D+LG +G  + A  +I  M MEP+ VIW +LL AC+ 
Sbjct:   491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM 550

Query:   530 YENLNVGEPVAKHLIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
             + N+ +GE  A++LI ++            ++A  G WN+  + R+++ ++ +KK+PGCS
Sbjct:   551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610

Query:   590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
              IE++ VVHEF + DK   + R+IY ML+ M
Sbjct:   611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 216/619 (34%), Positives = 349/619 (56%)

Query:     5 ANYNQPCNSTQST--LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
             +N NQP  + + +  + L+ +C +L  + Q H  MI TG   + +  +KL A  + S   
Sbjct:    19 SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFA 78

Query:    63 PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFS 121
              L E+AR +F +      K + F WN +I+ Y+ G DP  ++  F  M+       +K++
Sbjct:    79 SL-EYARKVFDEI----PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query:   122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
                ++KA + +  +  G  +HG+  K A GSD+F+ N LI  Y  CG L+ A ++F  + 
Sbjct:   134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query:   182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAW 239
              +D VS+NSMI+G+V+ G+ + A ELF  M   +   + ++   VL+  A++++ L+F  
Sbjct:   194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN-LEFGR 252

Query:   240 QIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             Q+   + E     +L   N+ML    KCG ++DA+ LFD M ++D V+W  M+DGYA   
Sbjct:   253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query:   296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
               + AR + + MP++D+VA NA++  Y +NG   +AL +F  +Q +  +  +  +LV  L
Sbjct:   313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query:   356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
             SA AQ+G ++ G  IH Y++K    +N     ALI MYSKCG +E + +VF  +E   V 
Sbjct:   373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF 432

Query:   416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
              W+AMI GLA+HG G  A D+  +M+  +++P+ +TFT +  AC+H GLV E    F  M
Sbjct:   433 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492

Query:   476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
                + + PE +HY C+VD+LGR+G++E A   IE MP+ P+  +W  LL AC+ + NLN+
Sbjct:   493 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

Query:   536 GEPVAKHLIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
              E     L+ ++            ++A LG W +   +R  M+   LKK PGCS IE++G
Sbjct:   553 AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDG 612

Query:   596 VVHEFFVRDKSRLQVRDIY 614
             ++HEF   D +      +Y
Sbjct:   613 MIHEFLSGDNAHPMSEKVY 631

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 217/618 (35%), Positives = 332/618 (53%)

Query:    12 NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
             N     + +L  CKT +   Q+H++ IT G   N     KL   +    C+ L     Y 
Sbjct:    32 NDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFW----CSRLGGHVSYA 87

Query:    72 FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
             +  +    E  D  +WN +IK +S      E + ++  ML  GV+ D  +   +L    R
Sbjct:    88 YKLFVKIPEP-DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR 146

Query:   132 LG-LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
              G  +  G ++H  + K   GS+L++QN L+ +Y  CG ++ AR +FD+    D  S+N 
Sbjct:   147 DGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNL 206

Query:   191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSV-----LNGYAQLKSG---LQFAWQIF 242
             MI GY +    E + EL   M   ERNL+S  SV     L+  +++K      +    + 
Sbjct:   207 MISGYNRMKEYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263

Query:   243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
             E   E  L   N++++    CG+MD A  +F  M  RDV+SW +++ GY + G + +AR 
Sbjct:   264 ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLART 323

Query:   303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
              FD+MP RD ++   M+ GY+R G   ++LEIF  MQ    + PD+ ++V VL+A A LG
Sbjct:   324 YFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLG 382

Query:   363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
              ++ G  I  Y++K++   +   G ALIDMY KCG  E A KVF  ++      W AM+ 
Sbjct:   383 SLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVV 442

Query:   423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
             GLA +G G+ A  +  +M+ +SI+PDDIT+ G+L+AC H+G+V +    F  MR  H++E
Sbjct:   443 GLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIE 502

Query:   483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
             P L HYGCMVD+LGRAG ++ A  ++  MPM PN ++W  LL A R + +  + E  AK 
Sbjct:   503 PSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKK 562

Query:   543 LIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
             ++ ++            ++AG   W D R VR  + +  +KK PG S IE+ G  HEF  
Sbjct:   563 ILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622

Query:   603 RDKSRLQVRDIYYMLDNM 620
              DKS LQ  +IY  L+ +
Sbjct:   623 GDKSHLQSEEIYMKLEEL 640

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 197/550 (35%), Positives = 320/550 (58%)

Query:    81 KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             ++D   WN+++  ++     +EAL  F +M   G  ++++S + VL ACS L  + +G+Q
Sbjct:   114 ERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ 173

Query:   141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
             +H L+ K  F SD+++ + L+ +Y +CG +  A+++FD+MG R+ VS+NS+I  + ++G 
Sbjct:   174 VHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGP 233

Query:   201 IESARELFDSM-PIR-ERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPER-DLISWN 254
                A ++F  M   R E + ++  SV++  A L   K G +   ++ +    R D+I  N
Sbjct:   234 AVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSN 293

Query:   255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
             + +    KC ++ +A+ +FD MP R+V++  +MI GYA       AR +F +M +R+VV+
Sbjct:   294 AFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS 353

Query:   315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
              NA++ GY +NG + +AL +F  ++ E    P   S   +L A A L  +  G+  H ++
Sbjct:   354 WNALIAGYTQNGENEEALSLFCLLKRESVC-PTHYSFANILKACADLAELHLGMQAHVHV 412

Query:   375 EKDQFSL-NGKH-----GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
              K  F   +G+      G +LIDMY KCG +E    VF ++ +     WNAMI G A +G
Sbjct:   413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472

Query:   429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
              G  A +L  EM     +PD IT  G+L+AC HAG V+EG   F  M R   + P   HY
Sbjct:   473 YGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query:   489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDX 548
              CMVD+LGRAG +E A+++IE+MPM+P+ VIW +LL+AC+ + N+ +G+ VA+ L+ ++ 
Sbjct:   533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592

Query:   549 XXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
                        M+A LG W D   VR  M++  + K PGCSWI+++G  H F V+DKS  
Sbjct:   593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHP 652

Query:   609 QVRDIYYMLD 618
             + + I+ +LD
Sbjct:   653 RKKQIHSLLD 662

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 199/541 (36%), Positives = 313/541 (57%)

Query:    81 KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGL 139
             ++D   WN ++  Y+      +A  +F  M + N VS   ++A  +L A  +   +EE  
Sbjct:   154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVS---WNA--LLSAYVQNSKMEEAC 208

Query:   140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
                 +L K      L   NCL+  +V+   +  ARQ FD M +RD VS+N++I GY +SG
Sbjct:   209 ----MLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSG 264

Query:   200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
              I+ AR+LFD  P+++  + +W ++++GY Q +  ++ A ++F+KMPER+ +SWN+ML G
Sbjct:   265 KIDEARQLFDESPVQD--VFTWTAMVSGYIQNRM-VEEARELFDKMPERNEVSWNAMLAG 321

Query:   260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
              V+  +M+ A+ LFD MP R+V +W  MI GYA+ G++  A+ LFD+MPKRD V+  AM+
Sbjct:   322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 381

Query:   320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
              GY ++G+S +AL +F  M+ E     + +S    LS  A +  ++ G  +H  L K  +
Sbjct:   382 AGYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGY 440

Query:   380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
                   G AL+ MY KCGSIE A  +F+++    +  WN MI G + HG GE+A      
Sbjct:   441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500

Query:   440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
             M+R  ++PDD T   +L+AC+H GLV +G   F  M + + + P  QHY CMVD+LGRAG
Sbjct:   501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560

Query:   500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDXXXXXXXXXXXX 559
              +E A NL+++MP EP+  IW TLL A R + N  + E  A  +  M+            
Sbjct:   561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 620

Query:   560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
             ++A  G W D  ++R  M+++ +KK+PG SWIE++   H F V D+   +  +I+  L+ 
Sbjct:   621 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEE 680

Query:   620 M 620
             +
Sbjct:   681 L 681

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 199/620 (32%), Positives = 339/620 (54%)

Query:    10 PCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
             P  ST +  +L  L  CK+LN + Q+HA ++ T  + N H     + + S S  +    +
Sbjct:     6 PIASTAANTILEKLSFCKSLNHIKQLHAHILRT--VIN-HKLNSFLFNLSVSSSSINLSY 62

Query:    68 ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
             A  +F    +     +  ++N  ++  S   +P+  ++ +  +   G  +D+FS   +LK
Sbjct:    63 ALNVF---SSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILK 119

Query:   128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
             A S++  + EG+++HG+  K+A   D F++   + +Y  CG + +AR +FD+M  RD V+
Sbjct:   120 AVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVT 179

Query:   188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL--KSG-LQFAWQIFEK 244
             +N+MI+ Y + G ++ A +LF+ M  ++ N++    +L        ++G +++   I+E 
Sbjct:   180 WNTMIERYCRFGLVDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF 237

Query:   245 MPERDLISWNSMLHGCVK----CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
             + E D+     +L   V      G MD A+  F KM  R++     M+ GY+K GR+D A
Sbjct:   238 LIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDA 297

Query:   301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
             + +FD+  K+D+V    M+  YV + Y  +AL +F+ M C   + PD  S+  V+SA A 
Sbjct:   298 QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCS-GIKPDVVSMFSVISACAN 356

Query:   361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
             LG +DK   +H  +  +          ALI+MY+KCG ++    VFE++   +V  W++M
Sbjct:   357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query:   421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
             IN L++HG    A  L   M++ ++EP+++TF G+L  C+H+GLV+EG   F  M   + 
Sbjct:   417 INALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 476

Query:   481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
             + P+L+HYGCMVD+ GRA  +  A  +IE MP+  N VIW +L+SACR +  L +G+  A
Sbjct:   477 ITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAA 536

Query:   541 KHLIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             K ++ ++            ++A    W D R +R +M+E+N+ K  G S I+  G  HEF
Sbjct:   537 KRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEF 596

Query:   601 FVRDKSRLQVRDIYYMLDNM 620
              + DK   Q  +IY  LD +
Sbjct:   597 LIGDKRHKQSNEIYAKLDEV 616

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 188/529 (35%), Positives = 298/529 (56%)

Query:    86 LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
             ++N ++K+ + G    + L +F  +   G+  D F+  +VLK+  RL  + EG ++HG  
Sbjct:    13 MYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYA 72

Query:   146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
              K     D ++ N L+ +Y   G +E   ++FD+M  RD VS+N +I  YV +G  E A 
Sbjct:    73 VKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAI 132

Query:   206 ELFDSMPIRERNLI----SWNSVLNGYAQLKSGLQFAWQIFEKMP---ERDLISWNSMLH 258
              +F  M  +E NL     +  S L+  + LK+ L+   +I+  +    E  +   N+++ 
Sbjct:   133 GVFKRMS-QESNLKFDEGTIVSTLSACSALKN-LEIGERIYRFVVTEFEMSVRIGNALVD 190

Query:   259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
                KCG +D A+A+FD M  ++V  W +M+ GY   GR+D AR LF+  P +DVV   AM
Sbjct:   191 MFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAM 250

Query:   319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
             M GYV+     +ALE+F  MQ    + PD+  LV +L+  AQ G +++G  IH Y+ +++
Sbjct:   251 MNGYVQFNRFDEALELFRCMQTA-GIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENR 309

Query:   379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              +++   G AL+DMY+KCG IE A++VF +I++     W ++I GLA++G+   A DL  
Sbjct:   310 VTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYY 369

Query:   439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
             EME + +  D ITF  +L AC H G V EG   F  M   H ++P+ +H  C++D+L RA
Sbjct:   370 EMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRA 429

Query:   499 GHIEAARNLIEDMPMEPNDV---IWRTLLSACRNYENLNVGEPVAKHLIGMDXXXXXXXX 555
             G ++ A  LI+ M  E ++    ++ +LLSA RNY N+ + E VA+ L  ++        
Sbjct:   430 GLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHT 489

Query:   556 XXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
                 ++A    W D   VR  MK+  ++K PGCS IE++GV HEF V D
Sbjct:   490 LLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGD 538

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 171/452 (37%), Positives = 269/452 (59%)

Query:   178 DKMGIRDSVSY-NSMIDGYVKSGN--IESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
             +K+G+   +   N++ID Y + G   +  A +LF+ M   ER+ +SWNS+L G   +K+G
Sbjct:   144 EKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS--ERDTVSWNSMLGGL--VKAG 199

Query:   235 -LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
              L+ A ++F++MP+RDLISWN+ML G  +C +M  A  LF+KMP+R+ VSW+ M+ GY+K
Sbjct:   200 ELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSK 259

Query:   294 LGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
              G +++AR +FD+MP   ++VV    ++ GY   G   +A  + D M     L  D A++
Sbjct:   260 AGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS-GLKFDAAAV 318

Query:   352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
             + +L+A  + G +  G+ IH  L++     N     AL+DMY+KCG+++ A  VF  I  
Sbjct:   319 ISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK 378

Query:   412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
               +  WN M++GL +HG G+ A +L   M R  I PD +TF  +L +C HAGL+ EG+  
Sbjct:   379 KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDY 438

Query:   472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
             F  M +++ L P+++HYGC+VD+LGR G ++ A  +++ MPMEPN VIW  LL ACR + 
Sbjct:   439 FYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498

Query:   532 NLNVGEPVAKHLIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
              +++ + V  +L+ +D            ++A    W     +RS MK   ++K  G S +
Sbjct:   499 EVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558

Query:   592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
             ELE  +HEF V DKS  +   IY ML ++  P
Sbjct:   559 ELEDGIHEFTVFDKSHPKSDQIYQMLGSLIEP 590

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 186/498 (37%), Positives = 283/498 (56%)

Query:   126 LKACSRLGLIEEGLQIHGLLRKVAFGSDL-----FLQNCLISLYVRCGYLEFARQLFDKM 180
             L+ CS+    EE  QIH  + K     D      FL  C+ S      +L +A+ +FD  
Sbjct:    21 LQRCSKQ---EELKQIHARMLKTGLMQDSYAITKFLSFCISS--TSSDFLPYAQIVFDGF 75

Query:   181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKS---GL 235
                D+  +N MI G+  S   E +  L+  M       N  ++ S+L   + L +     
Sbjct:    76 DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETT 135

Query:   236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             Q   QI +   E D+ + NS+++     G    A  LFD++P+ D VSW ++I GY K G
Sbjct:   136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195

Query:   296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
             ++DIA  LF +M +++ ++   M+ GYV+   + +AL++F  MQ    + PD+ SL   L
Sbjct:   196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ-NSDVEPDNVSLANAL 254

Query:   356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
             SA AQLG +++G  IH YL K +  ++   G  LIDMY+KCG +E A++VF+ I+  SV 
Sbjct:   255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314

Query:   416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
              W A+I+G A HG G  A    MEM+++ I+P+ ITFT +L AC++ GLV+EG L F  M
Sbjct:   315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374

Query:   476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
              R + L+P ++HYGC+VD+LGRAG ++ A+  I++MP++PN VIW  LL ACR ++N+ +
Sbjct:   375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434

Query:   536 GEPVAKHLIGMDXXXXXXXXXXXXMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
             GE + + LI +D            + A    W+ A   R +MKE+ + K+PGCS I LEG
Sbjct:   435 GEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEG 494

Query:   596 VVHEFFVRDKSRLQVRDI 613
               HEF   D+S  ++  I
Sbjct:   495 TTHEFLAGDRSHPEIEKI 512

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22137	PP202_ARATH	No assigned EC number	0.6548	0.9305	0.9624	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	634
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-105
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-88
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-51
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-38
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-36
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-35
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-29
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-19
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-06
pfam01535	31	pfam01535, PPR, PPR repeat	8e-06
pfam01535	31	pfam01535, PPR, PPR repeat	3e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
pfam01535	31	pfam01535, PPR, PPR repeat	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  338 bits (868), Expect = e-105
 Identities = 188/622 (30%), Positives = 313/622 (50%), Gaps = 55/622 (8%)

Query: 7   YNQPCNSTQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           Y  PC        +LR C  + D+    ++HA ++  GF  +  +   L+  +    C  
Sbjct: 188 YTFPC--------VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK--CGD 237

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           +   AR +F +      ++D   WNA+I  Y    +  E L +F  M +  V  D  + +
Sbjct: 238 VVS-ARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            V+ AC  LG    G ++HG + K  F  D+ + N LI +Y+  G    A ++F +M  +
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D+VS+ +MI GY K+G  + A E +  M          ++V                   
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQ--------DNV------------------- 385

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA----NMIDGYAKLGRVDI 299
             P  D I+  S+L  C   G +D    L +   ++ ++S+      +I+ Y+K   +D 
Sbjct: 386 -SP--DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  +F  +P++DV++  +++ G   N    +AL  F  M   L L P+  +L+  LSA A
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML--LTLKPNSVTLIAALSACA 500

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           ++G +  G  IH ++ +     +G    AL+D+Y +CG +  A   F   E   V  WN 
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNI 559

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           ++ G   HG G +A +L   M    + PD++TF  LL AC+ +G+V +GL  F  M   +
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            + P L+HY C+VD+LGRAG +  A N I  MP+ P+  +W  LL+ACR + ++ +GE  
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           A+H+  +D ++   Y+LL N++A  G W++  RVR  M+E  L   PGCSW+E++G VH 
Sbjct: 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739

Query: 600 FFVRDKSRLQVRDIYYMLDNMW 621
           F   D+S  Q+++I  +L+  +
Sbjct: 740 FLTDDESHPQIKEINTVLEGFY 761

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  289 bits (741), Expect = 2e-88
 Identities = 156/497 (31%), Positives = 256/497 (51%), Gaps = 29/497 (5%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +++AC  L  I     ++  +    F  D ++ N ++ ++V+CG L  AR+LFD+M  R+
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
             S+ ++I G V +GN   A  LF  M     +      V+   A    G   A Q    
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ---- 244

Query: 245 MPERDLISWNSMLHGCV-KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
                       LH CV K G + D             VS A +ID Y+K G ++ AR +
Sbjct: 245 -----------QLHCCVLKTGVVGDT-----------FVSCA-LIDMYSKCGDIEDARCV 281

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD MP++  VA N+M+ GY  +GYS +AL ++  M  +  +  D  +  I++   ++L  
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLAL 340

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           ++     H  L +  F L+     AL+D+YSK G +E+A  VF+++   ++  WNA+I G
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
              HG G  A ++   M    + P+ +TF  +L+AC ++GL ++G   F+ M   H+++P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
              HY CM+++LGR G ++ A  +I   P +P   +W  LL+ACR ++NL +G   A+ L
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
            GM     ++YV+L N++   G   +A +V   +K + L   P C+WIE++   H FF  
Sbjct: 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580

Query: 604 DKSRLQVRDIYYMLDNM 620
           D+   Q R+IY  LD +
Sbjct: 581 DRLHPQSREIYQKLDEL 597

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  190 bits (485), Expect = 1e-51
 Identities = 121/409 (29%), Positives = 199/409 (48%), Gaps = 48/409 (11%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A Y+F K      ++D F WN ++  Y+      EAL ++  ML  GV  D ++   VL+
Sbjct: 140 AWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C  +  +  G ++H  + +  F  D+ + N LI++YV+CG +  AR +FD+M  RD +S
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRER----NLISWNSVLNGYAQLKSGLQFAWQIFE 243
           +N+MI GY ++G      ELF +M  RE     +L++  SV++   +L    +   ++  
Sbjct: 256 WNAMISGYFENGECLEGLELFFTM--RELSVDPDLMTITSVISA-CELLGDERLGREMHG 312

Query: 244 KMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            + +     D+   NS++   +  G   +A+ +F +M  +D VSW  MI GY K      
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK------ 366

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
                                    NG   KALE +  M+ +  + PD+ ++  VLSA A
Sbjct: 367 -------------------------NGLPDKALETYALMEQD-NVSPDEITIASVLSACA 400

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            LG +D GV +H   E+           ALI+MYSKC  I+ A++VF  I +  V  W +
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +I GL ++     A     +M  L+++P+ +T    L+ACA  G +  G
Sbjct: 461 IIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCG 508

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  151 bits (384), Expect = 2e-38
 Identities = 125/444 (28%), Positives = 205/444 (46%), Gaps = 54/444 (12%)

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG--LLRKVAFGSDLFLQNC 159
           +AL +   M +  V VD+ +   + + C     +EEG ++    L    + G  + L N 
Sbjct: 69  QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG--VRLGNA 126

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           ++S++VR G L  A  +F KM  RD  S+N ++ GY K+G  + A  L+  M        
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM-------- 178

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-----VKCGKMDDAQAL-F 273
            W  V                        D+ ++  +L  C     +  G+   A  + F
Sbjct: 179 LWAGV----------------------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
                 DVV+   +I  Y K G V  AR +FD MP+RD ++ NAM+ GY  NG  ++ LE
Sbjct: 217 GFELDVDVVN--ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F  M+ EL + PD  ++  V+SA   LG    G  +H Y+ K  F+++     +LI MY
Sbjct: 275 LFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
              GS   A KVF ++E      W AMI+G   +GL + A +    ME+ ++ PD+IT  
Sbjct: 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY----GCMVDILGRAGHIEAARNLIE 509
            +L+ACA  G +  G+   EL  R       L  Y      ++++  +   I+ A  +  
Sbjct: 394 SVLSACACLGDLDVGVKLHELAER-----KGLISYVVVANALIEMYSKCKCIDKALEVFH 448

Query: 510 DMPMEPNDVIWRTLLSA-CRNYEN 532
           ++P E + + W ++++    N   
Sbjct: 449 NIP-EKDVISWTSIIAGLRLNNRC 471

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  143 bits (362), Expect = 7e-36
 Identities = 101/373 (27%), Positives = 156/373 (41%), Gaps = 62/373 (16%)

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQL 231
           +L D    +  VS  S I+  V  G    A ELF+ +           ++++++     L
Sbjct: 77  RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136

Query: 232 KS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI 288
           KS        W +     E D    N +L   VKCG + DA+ LFD+MP+R++ SW  +I
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
            G    G    A  LF EM                         E   +         + 
Sbjct: 197 GGLVDAGNYREAFALFREM------------------------WEDGSD--------AEP 224

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            + V++L A A LG    G  +H  + K     +     ALIDMYSKCG IE+A  VF+ 
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC--------- 459
           + + +   WN+M+ G A+HG  E A  L  EM    +  D  TF+ ++            
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344

Query: 460 --AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
             AHAGL++ G               ++     +VD+  + G +E ARN+ + MP + N 
Sbjct: 345 KQAHAGLIRTG------------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NL 391

Query: 518 VIWRTLLSACRNY 530
           + W  L++   N+
Sbjct: 392 ISWNALIAGYGNH 404

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  142 bits (359), Expect = 1e-35
 Identities = 92/369 (24%), Positives = 172/369 (46%), Gaps = 40/369 (10%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           ++   W  II       + +EA  +F  M ++G   +  +  ++L+A + LG    G Q+
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  + K     D F+   LI +Y +CG +E AR +FD M  + +V++NSM+ GY   G  
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           E A  L+  M                     SG+             D  +++ M+    
Sbjct: 307 EEALCLYYEM-------------------RDSGVSI-----------DQFTFSIMIRIFS 336

Query: 262 KCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
           +   ++ A+     + +     D+V+   ++D Y+K GR++ AR +FD MP++++++ NA
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++ GY  +G   KA+E+F+ M  E  + P+  + + VLSA    G  ++G  I + + ++
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455

Query: 378 Q-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGEL 432
                   H   +I++  + G ++ A  +  +     +V+ W A++    IH    LG L
Sbjct: 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515

Query: 433 AFDLLMEME 441
           A + L  M 
Sbjct: 516 AAEKLYGMG 524

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  121 bits (306), Expect = 8e-29
 Identities = 99/335 (29%), Positives = 175/335 (52%), Gaps = 36/335 (10%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++ TG + +T ++  L+  +S   C  + + AR +F        +K    WN+++
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSK--CGDIED-ARCVFDGM----PEKTTVAWNSML 297

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             Y+ HG   +EAL ++  M D+GVS+D+F+ S++++  SRL L+E   Q H  L +  F
Sbjct: 298 AGYALHGYS-EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             D+     L+ LY + G +E AR +FD+M  ++ +S+N++I GY   G    A E+F+ 
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416

Query: 211 MPIRER---NLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCV----- 261
           M I E    N +++ +VL+      SGL +  W+IF+ M E   I   +M + C+     
Sbjct: 417 M-IAEGVAPNHVTFLAVLSACRY--SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473

Query: 262 KCGKMDDAQALFDKMP-KRDVVSWANM-----IDGYAKLGRVDIARRLFDEMPKR---DV 312
           + G +D+A A+  + P K  V  WA +     I    +LGR+  A +L+   P++    V
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL-AAEKLYGMGPEKLNNYV 532

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCE-LYLHP 346
           V  N     Y  +G   +A ++ + ++ + L +HP
Sbjct: 533 VLLNL----YNSSGRQAEAAKVVETLKRKGLSMHP 563

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 92.2 bits (229), Expect = 3e-19
 Identities = 83/351 (23%), Positives = 142/351 (40%), Gaps = 53/351 (15%)

Query: 189 NSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           NS +      G +E A +L +SM     P+ E   ++   +      ++ G +   +   
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
             P   +   N+ML   V+ G++  A  +F KMP+RD+ SW  ++ GYAK G  D A  L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           +  M          +  G                      + PD  +   VL     +  
Sbjct: 175 YHRM----------LWAG----------------------VRPDVYTFPCVLRTCGGIPD 202

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +G  +H ++ +  F L+     ALI MY KCG + +A  VF+++       WNAMI+G
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL-- 481
              +G      +L   M  LS++PD +T T +++AC   G  + G       R +H    
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG-------REMHGYVV 315

Query: 482 ----EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSAC 527
                 ++     ++ +    G    A  +     ME  D + W  ++S  
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR--METKDAVSWTAMISGY 364

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 72.6 bits (178), Expect = 4e-13
 Identities = 64/306 (20%), Positives = 150/306 (49%), Gaps = 21/306 (6%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLF 304
           D   + +++  C K GK+D    +F +M     + +V ++  +IDG A+ G+V  A   +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530

Query: 305 DEMPKRDV----VACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAIA 359
             M  ++V    V  NA++    ++G   +A ++   M+ E + + PD  ++  ++ A A
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQI-EDGSVDH 416
             G +D+   +++ +   ++++ G   V    ++  S+ G  + A+ +++ + + G    
Sbjct: 591 NAGQVDRAKEVYQMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648

Query: 417 ---WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
              ++A+++     G  + AF++L +  +  I+   ++++ L+ AC++A   K+ L  +E
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNY 530
            ++ I KL P +     ++  L     +  A  ++ +M    + PN + +  LL A    
Sbjct: 709 DIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767

Query: 531 ENLNVG 536
           ++ +VG
Sbjct: 768 DDADVG 773

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 70/357 (19%), Positives = 138/357 (38%), Gaps = 67/357 (18%)

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+ +     +G   +AL++ ++MQ EL +  D+ + V +         +++G  +     
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
               SL  + G A++ M+ + G + +A  VF ++ +  +  WN ++ G A  G  + A  
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK------LEPELQHYG 489
           L   M    + PD  TF  +L  C        G+      R +H        E ++    
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCG-------GIPDLARGREVHAHVVRFGFELDVDVVN 226

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYEN-----------LNVGE 537
            ++ +  + G + +AR + + MP    D I W  ++S    +EN                
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRR--DCISWNAMISG--YFENGECLEGLELFFTMREL 282

Query: 538 PVAKHLIGMDSSNSSSYVL---------------------------LSNMFAGLGMWNDA 570
            V   L+ + S  S+  +L                           L  M+  LG W +A
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD-NMWTPDSV 626
            +V S M+ ++       SW  +     +  + DK+     + Y +++ +  +PD +
Sbjct: 343 EKVFSRMETKDA-----VSWTAMISGYEKNGLPDKA----LETYALMEQDNVSPDEI 390

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.9 bits (131), Expect = 9e-10
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           +N +I+G    G  E A  L  EM++  I+P+  T++ L++    
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 79/389 (20%), Positives = 163/389 (41%), Gaps = 52/389 (13%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-- 180
           ++++  C+    I+  L++  L+++    +D  L   LIS   + G ++   ++F +M  
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500

Query: 181 -GIRDSV-SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
            G+  +V ++ ++IDG  ++G +  A                       Y  ++S     
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKA--------------------FGAYGIMRS----- 535

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP------KRDVVSWANMIDGYA 292
                K  + D + +N+++  C + G +D A  +  +M         D ++   ++   A
Sbjct: 536 -----KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK-----ALEIFDNMQCELYLHPD 347
             G+VD A+ ++  + + ++     +    V N  S K     AL I+D+M+ +  + PD
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV-NSCSQKGDWDFALSIYDDMK-KKGVKPD 648

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           +     ++      G +DK   I +   K    L      +L+   S   + + A++++E
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 408 QIEDG----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            I+      +V   NA+I  L        A ++L EM+RL + P+ IT++ LL A     
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMV 492
               GL       +   ++P L    C+ 
Sbjct: 769 DADVGLDLLSQA-KEDGIKPNLVMCRCIT 796

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.0 bits (126), Expect = 5e-09
 Identities = 17/49 (34%), Positives = 34/49 (69%), Gaps = 4/49 (8%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAK 293
           D++++N+++ G  K GK+++A  LF++M KR    +V +++ +IDG  K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRER--NLISWNSVLNGYAQ 230
           D V+YN++IDGY K G +E A +LF+ M  R    N+ +++ +++G  +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVR 324
           DVV++  +IDGY K G+V+ A +LF+EM KR    +V   + ++ G  +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 56.8 bits (137), Expect = 3e-08
 Identities = 73/375 (19%), Positives = 138/375 (36%), Gaps = 100/375 (26%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL---GRVDIARRL 303
           + +L   +S         +   A        KR        ID Y +L   GR+     L
Sbjct: 336 DAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKS---PEYIDAYNRLLRDGRIKDCIDL 392

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ--------CELYLHPDDASLVIVL 355
            ++M KR ++  + +        Y  K  +     +         +L  +P  ++  +++
Sbjct: 393 LEDMEKRGLLDMDKI--------YHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           S  A    ID  + + R +++     + K    LI   +K G ++   +VF ++ +  V+
Sbjct: 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504

Query: 416 ---H-WNAMINGLA------------------------------IHGLGEL-----AFDL 436
              H + A+I+G A                              I   G+      AFD+
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564

Query: 437 LMEM--ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR----------------- 477
           L EM  E   I+PD IT   L+ ACA+AG V      ++++                   
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624

Query: 478 -----------IHK------LEPELQHYGCMVDILGRAGHIEAARNLIEDMP---MEPND 517
                      I+       ++P+   +  +VD+ G AG ++ A  +++D     ++   
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684

Query: 518 VIWRTLLSACRNYEN 532
           V + +L+ AC N +N
Sbjct: 685 VSYSSLMGACSNAKN 699

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 5e-07
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)

Query: 158 NCLISLYVRCGYLEFARQLFDKM---GIR-DSVSYNSMIDGYVK 197
           N LI  Y + G +E A +LF++M   GI+ +  +Y+ +IDG  K
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           K  K DVV++  +IDG  + GRVD A  L DEM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.3 bits (101), Expect = 8e-06
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D V+YN++IDG  ++G ++ A EL D M 
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSM 211
           V+YNS+I GY K+G +E A ELF  M
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 22/31 (70%)

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           +++NS++ G  K GK+++A  LF +M ++ V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           DVV  N ++ GY + G   +AL++F+ M+    + P+  +  I++  + +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSM 211
           V+YN++IDG  K+G +E A ELF  M
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEM 26

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 95/452 (21%), Positives = 160/452 (35%), Gaps = 70/452 (15%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE----SARELFDSMPIRERNLISWNSVL 225
           LE A QL  ++G  D +    +I  Y++SG  +    +A++L    P    N    N  L
Sbjct: 420 LETAAQLDPELGRADLL----LILSYLRSGQFDKALAAAKKLEKKQP---DNASLHN--L 470

Query: 226 NGYAQLKSG-LQFAWQIFEKMPERD-----LISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
            G   L  G L  A + FEK    +       +  + +   ++ G  DDA   F+K+   
Sbjct: 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID--IQEGNPDDAIQRFEKVLTI 528

Query: 280 DVVSWANMIDGYAKL----GRVDIARRLFDEMPKRDVVACN---AMMGGYVRNGYSMKAL 332
           D  +   ++   A L    G  + A    ++  + +        A+   Y+  G   KAL
Sbjct: 529 DPKNLRAIL-ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587

Query: 333 EIFDNMQCELYLHPDDASLVIVL-SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--- 388
            I +         PD     ++L  A    G ++K V+  + L      L     +A   
Sbjct: 588 AILNEAAD---AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA----LQPDSALALLL 640

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNA---MINGLAIHGLGELAFDLLMEMERLSI 445
           L D Y+   +   AI   ++  +   D+  A   +   L      E A  +   +++   
Sbjct: 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFEL---------MRRIHKLEPELQHYGCMVDILG 496
           +             A  G   EG L              R+  K  P  Q+   +   L 
Sbjct: 701 K-------------AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL 747

Query: 497 RAGHIEAARNLIED-MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            +G+   A   +E  +   PND + RT L+    Y      +   KH   +      + V
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL--YLAQKDYDKAIKHYQTVVKKAPDNAV 805

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           +L+N+        D R +     ER LK  P 
Sbjct: 806 VLNNLAWLYLELKDPRALE--YAERALKLAPN 835

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           V++ ++I GY K G+++ A  LF EM ++ V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 23/34 (67%)

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           K  + D++++N+++ G  + G++D+A  L D+M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           V++  +IDG  K GRV+ A  LF EM +R + 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSI 445
           +N++I+G    G  E A +L  EM+   +
Sbjct: 3   YNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +N +I+GL   G  E A +L  EM+   IEPD 
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           +++N+++ G  K G++++A  LF +M +R + 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	634
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.77
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.71
KOG2076	895	consensus RNA polymerase III transcription factor	99.68
KOG2003	840	consensus TPR repeat-containing protein [General f	99.67
KOG2076	895	consensus RNA polymerase III transcription factor	99.65
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.65
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.63
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.58
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.55
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.55
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.51
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.51
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.47
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.47
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.46
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.44
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.33
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.32
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.32
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.29
PF13041	50	PPR_2: PPR repeat family	99.29
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.27
PRK12370	553	invasion protein regulator; Provisional	99.26
KOG1129	478	consensus TPR repeat-containing protein [General f	99.25
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.24
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.23
KOG1129	478	consensus TPR repeat-containing protein [General f	99.21
PRK11189	296	lipoprotein NlpI; Provisional	99.18
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.16
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.15
PF13041	50	PPR_2: PPR repeat family	99.15
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.14
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.11
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.1
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.06
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.05
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.05
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.98
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.98
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.97
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.96
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.95
KOG1125	579	consensus TPR repeat-containing protein [General f	98.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.9
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.89
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.88
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.81
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.77
PRK04841	903	transcriptional regulator MalT; Provisional	98.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.67
PRK15359	144	type III secretion system chaperone protein SscB;	98.64
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
KOG1125	579	consensus TPR repeat-containing protein [General f	98.6
PRK15359	144	type III secretion system chaperone protein SscB;	98.6
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
PLN02789	320	farnesyltranstransferase	98.53
PF12854	34	PPR_1: PPR repeat	98.53
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.52
PF12854	34	PPR_1: PPR repeat	98.52
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.51
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.47
PRK04841	903	transcriptional regulator MalT; Provisional	98.47
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.46
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.41
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.4
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.38
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.37
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.34
PLN02789	320	farnesyltranstransferase	98.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.28
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.27
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.24
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.24
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.23
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.17
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.14
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.1
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.08
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.07
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.01
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.0
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.99
KOG0553	304	consensus TPR repeat-containing protein [General f	97.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.94
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.92
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.92
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.89
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.85
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.84
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.83
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.83
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.81
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.75
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.74
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.71
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.67
KOG0553	304	consensus TPR repeat-containing protein [General f	97.64
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.61
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.6
PF13371	73	TPR_9: Tetratricopeptide repeat	97.59
PRK15331	165	chaperone protein SicA; Provisional	97.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.55
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.51
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.51
PF12688	120	TPR_5: Tetratrico peptide repeat	97.5
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.47
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.46
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.45
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.45
PF13431	34	TPR_17: Tetratricopeptide repeat	97.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.43
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.42
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.42
PRK10803	263	tol-pal system protein YbgF; Provisional	97.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.39
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.38
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.36
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.29
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.29
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.28
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.27
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.21
KOG1258	577	consensus mRNA processing protein [RNA processing	97.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.17
PF13428	44	TPR_14: Tetratricopeptide repeat	97.16
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.09
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.04
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.03
PF12688	120	TPR_5: Tetratrico peptide repeat	97.02
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.01
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.99
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.98
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.97
PRK10803	263	tol-pal system protein YbgF; Provisional	96.96
PF13371	73	TPR_9: Tetratricopeptide repeat	96.9
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.79
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.72
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.69
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.67
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.67
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.64
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.51
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.51
KOG1585	308	consensus Protein required for fusion of vesicles	96.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.43
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.43
KOG4555	175	consensus TPR repeat-containing protein [Function	96.39
KOG1258	577	consensus mRNA processing protein [RNA processing	96.28
PRK11906	458	transcriptional regulator; Provisional	96.25
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.18
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.17
PF13512	142	TPR_18: Tetratricopeptide repeat	96.16
PRK11906	458	transcriptional regulator; Provisional	95.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.93
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.92
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.8
PRK09687	280	putative lyase; Provisional	95.7
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.62
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.57
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.4
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.4
PF13512	142	TPR_18: Tetratricopeptide repeat	95.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.38
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.34
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.27
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.08
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.98
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.84
PRK15331	165	chaperone protein SicA; Provisional	94.84
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.76
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.73
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.61
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.58
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.57
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.53
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.41
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.34
KOG4234	271	consensus TPR repeat-containing protein [General f	94.3
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.12
KOG4555	175	consensus TPR repeat-containing protein [Function	93.92
KOG3941	406	consensus Intermediate in Toll signal transduction	93.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.83
PRK11619	644	lytic murein transglycosylase; Provisional	93.63
KOG3941	406	consensus Intermediate in Toll signal transduction	93.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.32
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.27
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.16
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.14
PRK09687	280	putative lyase; Provisional	93.06
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.87
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.83
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.66
PF13428	44	TPR_14: Tetratricopeptide repeat	92.55
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.38
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.29
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.17
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.12
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.07
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.06
KOG1586	288	consensus Protein required for fusion of vesicles	91.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.95
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.93
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.18
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.96
KOG2062	929	consensus 26S proteasome regulatory complex, subun	90.84
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.79
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.6
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.48
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.39
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.77
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.76
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.68
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.26
KOG1585	308	consensus Protein required for fusion of vesicles	89.24
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.63
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.5
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.35
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.88
KOG1586	288	consensus Protein required for fusion of vesicles	87.84
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.81
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	87.13
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.93
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.92
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.89
KOG4234	271	consensus TPR repeat-containing protein [General f	86.59
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.15
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	86.1
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.59
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.42
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	85.31
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	85.2
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.09
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.86
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	84.35
COG4105	254	ComL DNA uptake lipoprotein [General function pred	84.08
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	84.06
COG3947	361	Response regulator containing CheY-like receiver a	83.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	83.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.66
PRK10941	269	hypothetical protein; Provisional	83.62
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	83.34
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.24
KOG4570	418	consensus Uncharacterized conserved protein [Funct	82.84
PRK11619	644	lytic murein transglycosylase; Provisional	82.79
KOG1550	552	consensus Extracellular protein SEL-1 and related	82.34
PF13431	34	TPR_17: Tetratricopeptide repeat	82.14
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	81.77
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.15
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.85
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.83
KOG4570	418	consensus Uncharacterized conserved protein [Funct	80.8
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	80.19
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.08
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	80.07

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.8e-85  Score=717.95  Aligned_cols=601  Identities=31%  Similarity=0.580  Sum_probs=565.2

Q ss_pred             hhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHH
Q 047120           15 QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY   94 (634)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~   94 (634)
                      ..++..+...+.+..+.+++.++++.|..+++.++|.||.+|+++|+.   ..|+++|++|+    +||..+||.+|.+|
T Consensus        90 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~---~~A~~~f~~m~----~~d~~~~n~li~~~  162 (857)
T PLN03077         90 VALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL---VHAWYVFGKMP----ERDLFSWNVLVGGY  162 (857)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh---HHHHHHHhcCC----CCCeeEHHHHHHHH
Confidence            333344444455666778888888888888888999999999999998   99999999997    68999999999999


Q ss_pred             HcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 047120           95 SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR  174 (634)
Q Consensus        95 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  174 (634)
                      ++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++|+.+|++.|+++.|.
T Consensus       163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  242 (857)
T PLN03077        163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR  242 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--C-----------------------------------CC
Q 047120          175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--E-----------------------------------RN  217 (634)
Q Consensus       175 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----------------------------------p~  217 (634)
                      ++|++|+.+|..+||++|.+|++.|++++|+++|.+|...  .                                   ||
T Consensus       243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d  322 (857)
T PLN03077        243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD  322 (857)
T ss_pred             HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence            9999999999999999999999999999999999999764  3                                   45


Q ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC-------------------
Q 047120          218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-------------------  278 (634)
Q Consensus       218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------  278 (634)
                      ..+|+.++.+|++.|+ ++.|.++|++|..||..+|+.++.+|.+.|++++|+++|++|.+                   
T Consensus       323 ~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        323 VSVCNSLIQMYLSLGS-WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             hHHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence            6667777777888888 99999999999999999999999999999999999999998842                   


Q ss_pred             --------------------CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH
Q 047120          279 --------------------RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM  338 (634)
Q Consensus       279 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  338 (634)
                                          ++..+++.|+++|+++|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|
T Consensus       402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m  481 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM  481 (857)
T ss_pred             cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                456677889999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHH
Q 047120          339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN  418 (634)
Q Consensus       339 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  418 (634)
                      ..  ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+||
T Consensus       482 ~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n  558 (857)
T PLN03077        482 LL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWN  558 (857)
T ss_pred             Hh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHH
Confidence            84  5899999999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA  498 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  498 (634)
                      ++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++++++|++.
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~  638 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA  638 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999996689999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       499 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      |++++|.+++++|+++||..+|++|+.+|...|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|+
T Consensus       639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHH--------hcccCccc
Q 047120          579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD--------NMWTPDSV  626 (634)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  626 (634)
                      +.|+++.||+||+++.+.+|.|+.++++||+..+.|.+++        .++.||..
T Consensus       719 ~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~  774 (857)
T PLN03077        719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES  774 (857)
T ss_pred             HcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence            9999999999999999999999999999999999887555        36778743

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.6e-74  Score=615.53  Aligned_cols=518  Identities=29%  Similarity=0.497  Sum_probs=483.3

Q ss_pred             CCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHH
Q 047120           80 EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN  158 (634)
Q Consensus        80 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  158 (634)
                      ..++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++
T Consensus        83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n  162 (697)
T PLN03081         83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN  162 (697)
T ss_pred             CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            35677899999999999999999999999999864 78999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHH
Q 047120          159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQ  236 (634)
Q Consensus       159 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~  236 (634)
                      .|+.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|...  .|+..+|+.++.+++..+. .+
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~-~~  241 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-AR  241 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc-HH
Confidence            99999999999999999999999999999999999999999999999999999765  5666677776666666665 55


Q ss_pred             HHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH
Q 047120          237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN  316 (634)
Q Consensus       237 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  316 (634)
                      .+.+++..+.                           +.-..+|..++++|+++|+++|++++|.++|++|.++|+.+||
T Consensus       242 ~~~~l~~~~~---------------------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n  294 (697)
T PLN03081        242 AGQQLHCCVL---------------------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN  294 (697)
T ss_pred             HHHHHHHHHH---------------------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHH
Confidence            5554332211                           1112378889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC  396 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (634)
                      .++.+|++.|+.++|+++|++|... |+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++
T Consensus       295 ~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~  373 (697)
T PLN03081        295 SMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW  373 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence            9999999999999999999999987 899999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120          397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR  476 (634)
Q Consensus       397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  476 (634)
                      |++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus       374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120          477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  556 (634)
                      +.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|...|+++.|+.+++++++.+|.++..|..
T Consensus       454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~  533 (697)
T PLN03081        454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV  533 (697)
T ss_pred             HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence            87899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHH--------HhcccCccc
Q 047120          557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML--------DNMWTPDSV  626 (634)
Q Consensus       557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  626 (634)
                      |+++|.+.|+|++|.++++.|++.|+++.||+||+++.+.+|.|++++..||+..+.+.++        +.++.||..
T Consensus       534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999988877644        446888854

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.7e-71  Score=606.64  Aligned_cols=563  Identities=23%  Similarity=0.326  Sum_probs=523.3

Q ss_pred             CCCCChhhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHH
Q 047120            9 QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWN   88 (634)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   88 (634)
                      ++....+.++..+.+++.+.++..++..|.+.|++|+..+|..++.++.+.+..   ..|.+++..+.+.+..++...+|
T Consensus        49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~n  125 (857)
T PLN03077         49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV---EEGSRVCSRALSSHPSLGVRLGN  125 (857)
T ss_pred             cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCH---HHHHHHHHHHHHcCCCCCchHHH
Confidence            334556788888999999999999999999999999999999999999999888   99999999999888889999999


Q ss_pred             HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120           89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG  168 (634)
Q Consensus        89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  168 (634)
                      .+|..|++.|+.+.|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.+
T Consensus       126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~  201 (857)
T PLN03077        126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP  201 (857)
T ss_pred             HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence            999999999999999999999975    8999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhh
Q 047120          169 YLEFARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK  244 (634)
Q Consensus       169 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~  244 (634)
                      +++.+.+++..|.    .+|..+||+||.+|++.|++++|.++|++|..  ||..+|+.++.+|++.|. .++|.++|++
T Consensus       202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~-~~eAl~lf~~  278 (857)
T PLN03077        202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGE-CLEGLELFFT  278 (857)
T ss_pred             chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCC-HHHHHHHHHH
Confidence            9999999998875    47999999999999999999999999999986  899999999999999999 9999999999


Q ss_pred             CCC----CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH
Q 047120          245 MPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN  316 (634)
Q Consensus       245 ~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  316 (634)
                      |..    ||..||+.++.+|.+.|+.+.|.+++..|.+    ||..+|++|+.+|++.|++++|.++|++|.++|..+|+
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n  358 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT  358 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence            965    9999999999999999999999999999974    89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC  396 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (634)
                      .++.+|++.|++++|+++|++|... |+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++++|++.
T Consensus       359 ~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~  437 (857)
T PLN03077        359 AMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC  437 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence            9999999999999999999999988 899999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120          397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR  476 (634)
Q Consensus       397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  476 (634)
                      |++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.
T Consensus       438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999986 599999999999999999999999999999998


Q ss_pred             HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-CCCCchHH
Q 047120          477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYV  555 (634)
Q Consensus       477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~  555 (634)
                      + .|+.++..++++|+++|+++|++++|.++|+++  .||..+|++++.+|.+.|+.++|.++|++|.+.+ .++..+|.
T Consensus       517 ~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  593 (857)
T PLN03077        517 R-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI  593 (857)
T ss_pred             H-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence            8 788888888888888888888888888888887  6788888888888888888888888888887765 45677788


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHH-hCCCccCC
Q 047120          556 LLSNMFAGLGMWNDARRVRSMMK-ERNLKKLP  586 (634)
Q Consensus       556 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~  586 (634)
                      .++.+|.+.|++++|.++|+.|. +.|+.++.
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence            88888888888888888888887 56775543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.3e-63  Score=531.30  Aligned_cols=508  Identities=17%  Similarity=0.220  Sum_probs=377.4

Q ss_pred             CCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCC-CCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc
Q 047120           42 FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE-KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF  120 (634)
Q Consensus        42 ~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  120 (634)
                      -.++...|..++..+++.|++   ++|.++|++|...+. .++..+++.++.+|.+.|..++|+.+|+.|..    ||..
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l---~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~  438 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRI---KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS  438 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence            345677888888888888988   899999999987764 46777788888889999999999999888875    8889


Q ss_pred             hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHH
Q 047120          121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG----IRDSVSYNSMIDGYV  196 (634)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~  196 (634)
                      +|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.    .||..+|+.||.+|+
T Consensus       439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~  518 (1060)
T PLN03218        439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999887    478889999999999


Q ss_pred             hCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHh
Q 047120          197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD  274 (634)
Q Consensus       197 ~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (634)
                      +.|++++|+++|++|...  .||..+|+.+|.+|++.|+ +++|.++|++|....                         
T Consensus       519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~-~deA~~lf~eM~~~~-------------------------  572 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA-VDRAFDVLAEMKAET-------------------------  572 (1060)
T ss_pred             HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhc-------------------------
Confidence            999999998888888654  5666666666666666555 555555555542100                         


Q ss_pred             hCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH
Q 047120          275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS  350 (634)
Q Consensus       275 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~  350 (634)
                      .-..||..+|++++.+|++.|++++|.++|+.|.+    ++..+|+.+|.+|++.|++++|.++|++|... |+.||..+
T Consensus       573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~T  651 (1060)
T PLN03218        573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVF  651 (1060)
T ss_pred             CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHH
Confidence            00125556666666666666666666666666653    45566777777777777777777777777666 66777777


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHH
Q 047120          351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAI  426 (634)
Q Consensus       351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~  426 (634)
                      |+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.    .||..+|+.||.+|++
T Consensus       652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k  731 (1060)
T PLN03218        652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE  731 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777663    4666677777777777


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc---------
Q 047120          427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR---------  497 (634)
Q Consensus       427 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------  497 (634)
                      .|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+ .|+.||..+|++++..+.+         
T Consensus       732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~  810 (1060)
T PLN03218        732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALG  810 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence            777777777777777777777777777777777777777777777777766 5677777777766654321         


Q ss_pred             --------------cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-CCCCCchHHHHHH
Q 047120          498 --------------AGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM-DSSNSSSYVLLSN  559 (634)
Q Consensus       498 --------------~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~  559 (634)
                                    .+..++|..+|++|   ++.||..||+.++.+++..+..+.+..+++.+... .+++..+|..|++
T Consensus       811 ~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~  890 (1060)
T PLN03218        811 EPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD  890 (1060)
T ss_pred             hhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH
Confidence                          12346789999998   78899999999997777888888888888776533 3566778899998


Q ss_pred             HHhcCCCchHHHHHHHHHHhCCCccCC
Q 047120          560 MFAGLGMWNDARRVRSMMKERNLKKLP  586 (634)
Q Consensus       560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~  586 (634)
                      .+.+.  .++|..++++|.+.|+.+..
T Consensus       891 g~~~~--~~~A~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        891 GFGEY--DPRAFSLLEEAASLGVVPSV  915 (1060)
T ss_pred             hhccC--hHHHHHHHHHHHHcCCCCCc
Confidence            87322  36899999999999997654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.1e-62  Score=524.33  Aligned_cols=493  Identities=15%  Similarity=0.186  Sum_probs=405.7

Q ss_pred             ChhhHHHHHHhccCchHHHHHHHHHHHhCC-CCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHH
Q 047120           13 STQSTLLLLRKCKTLNDVNQIHARMITTGF-IKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII   91 (634)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li   91 (634)
                      ....+...|.+++++.++.++++.|.+.|+ +++...++.++..|.+.|..   ++|..+|..|.    .||..+||.+|
T Consensus       372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~---~eAl~lf~~M~----~pd~~Tyn~LL  444 (1060)
T PLN03218        372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV---KEAFRFAKLIR----NPTLSTFNMLM  444 (1060)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH---HHHHHHHHHcC----CCCHHHHHHHH
Confidence            344555556677999999999999999996 56778889999999999998   99999999997    49999999999


Q ss_pred             HHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHH
Q 047120           92 KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE  171 (634)
Q Consensus        92 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  171 (634)
                      .+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus       445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e  524 (1060)
T PLN03218        445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA  524 (1060)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccC----CCChhHHHHHHHHHHhcCCcHHHHHHHHh
Q 047120          172 FARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR----ERNLISWNSVLNGYAQLKSGLQFAWQIFE  243 (634)
Q Consensus       172 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~p~~~~~~~ll~~~~~~~~~~~~a~~~~~  243 (634)
                      +|.++|++|.    .||..+|+.||.+|++.|++++|.++|++|...    .||..+|+.++.+|++.|+ +++|.++|+
T Consensus       525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~-ldeA~elf~  603 (1060)
T PLN03218        525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-VDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence            9999999995    489999999999999999999999999999752    7899999999999999998 999999999


Q ss_pred             hCCC----CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CC
Q 047120          244 KMPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RD  311 (634)
Q Consensus       244 ~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~  311 (634)
                      .|.+    |+..+|+.+|.+|++.|++++|.++|++|.+    ||..+|+.++++|++.|++++|.++|+.|.+    +|
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            8876    6778888888888888888888888888863    7888888888888888888888888888864    67


Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120          312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID  391 (634)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  391 (634)
                      ..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            788888888888888888888888888776 7888888888888888888888888888888888888888888888888


Q ss_pred             HhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHH----c-------------------CChHHHHHHHHHHHHCC
Q 047120          392 MYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAI----H-------------------GLGELAFDLLMEMERLS  444 (634)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~----~-------------------~~~~~A~~~~~~m~~~g  444 (634)
                      +|++.|++++|.++|+.|.    .+|..+|+.++..|.+    .                   +..++|..+|++|.+.|
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G  842 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG  842 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence            8888888888888888876    4677788888765432    1                   11245666666666666


Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCCCH
Q 047120          445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPND  517 (634)
Q Consensus       445 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~  517 (634)
                      +.||..||+.++.++++.+..+.+..+++.+.. .+..|+..+|+++++++.+.  .++|..++++|   ++.|+.
T Consensus       843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV  915 (1060)
T ss_pred             CCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence            666666666666555555566666555555544 34455555666666655322  24566666665   444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.9e-58  Score=493.13  Aligned_cols=457  Identities=21%  Similarity=0.311  Sum_probs=427.3

Q ss_pred             ChhhHHHHHHhccCchHHHHHHHHHHHhC-CCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHH
Q 047120           13 STQSTLLLLRKCKTLNDVNQIHARMITTG-FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII   91 (634)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li   91 (634)
                      +++..+..+...++..++.+++..|...+ +.|+..+|+.++.++++.++.   +.|.+++..|.+.|..||..+||.++
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~---~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI---RCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            67777788888899999999999998864 789999999999999999998   99999999999999999999999999


Q ss_pred             HHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHH
Q 047120           92 KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE  171 (634)
Q Consensus        92 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  171 (634)
                      ..|++.|+++.|.++|++|.+    ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~  241 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR  241 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence            999999999999999999975    8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC
Q 047120          172 FARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE  247 (634)
Q Consensus       172 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  247 (634)
                      .+.+++..+.    .+|..+||+||.+|++.|++++|.++|++|..  +|..+|+.++.+|++.|+ .++|.++|++|.+
T Consensus       242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~-~~eA~~lf~~M~~  318 (697)
T PLN03081        242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGY-SEEALCLYYEMRD  318 (697)
T ss_pred             HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence            9999987764    36889999999999999999999999999976  799999999999999999 9999999999854


Q ss_pred             ----CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH
Q 047120          248 ----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM  319 (634)
Q Consensus       248 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~  319 (634)
                          ||..||+.++.+|++.|++++|.+++..|.+    +|..++++|+++|+++|++++|.++|++|.++|..+||.||
T Consensus       319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI  398 (697)
T PLN03081        319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI  398 (697)
T ss_pred             cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence                8999999999999999999999999999874    88999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHhHhcCC
Q 047120          320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMYSKCGS  398 (634)
Q Consensus       320 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~  398 (634)
                      .+|++.|+.++|+++|++|... |+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|+
T Consensus       399 ~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~  477 (697)
T PLN03081        399 AGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL  477 (697)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence            9999999999999999999988 9999999999999999999999999999999986 6999999999999999999999


Q ss_pred             HHHHHHHHHhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120          399 IENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMR  476 (634)
Q Consensus       399 ~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  476 (634)
                      +++|.++++++. .|+..+|++|+.+|...|+.+.|..+++++.+  +.|+ ..+|..+++.|++.|++++|.++++.|.
T Consensus       478 ~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        478 LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999997 78999999999999999999999999999974  5665 5699999999999999999999999999


Q ss_pred             HhcCccc
Q 047120          477 RIHKLEP  483 (634)
Q Consensus       477 ~~~~~~~  483 (634)
                      + .|+..
T Consensus       556 ~-~g~~k  561 (697)
T PLN03081        556 R-KGLSM  561 (697)
T ss_pred             H-cCCcc
Confidence            8 57643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.5e-33  Score=316.33  Aligned_cols=550  Identities=13%  Similarity=0.046  Sum_probs=356.6

Q ss_pred             HHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHc
Q 047120           17 TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH   96 (634)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~   96 (634)
                      ....+...++...+...+....+.. +.+..++..+...+.+.|+.   .+|...++.+....+ .+...|+.+...+.+
T Consensus       301 ~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~  375 (899)
T TIGR02917       301 AGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRV---DEAIATLSPALGLDP-DDPAALSLLGEAYLA  375 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence            3344555677777777777766653 34456667777777777777   777777777664432 355667777777778


Q ss_pred             CCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047120           97 GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL  176 (634)
Q Consensus        97 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  176 (634)
                      .|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.... +......++..+.+.|++++|.++
T Consensus       376 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  453 (899)
T TIGR02917       376 LGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAA  453 (899)
T ss_pred             CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHH
Confidence            888888888887777632 223344556666667777777777777777765432 233445566677777777777777


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC-hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CC
Q 047120          177 FDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN-LISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RD  249 (634)
Q Consensus       177 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~  249 (634)
                      ++.+..   .+..+|..+...+...|++++|.+.|+++....|+ ...+..+...+...|+ .++|...++++..   .+
T Consensus       454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~  532 (899)
T TIGR02917       454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTIDPKN  532 (899)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCc
Confidence            776643   24556777777777777777777777776655333 3445555666666666 7777777776654   34


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHH
Q 047120          250 LISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYV  323 (634)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  323 (634)
                      ..++..+...+.+.|+.++|..+++++.+   .+...+..++..|.+.|++++|..+++.+.+   .+...|..++.++.
T Consensus       533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (899)
T TIGR02917       533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL  612 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45666666777777777777777776643   3345566666777777777777777766653   34556677777777


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI  403 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  403 (634)
                      ..|++++|+..|+++....  +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.
T Consensus       613 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  689 (899)
T TIGR02917       613 AAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK  689 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            7777777777777776431  2234456666666667777777777777666543 334566666677777777777777


Q ss_pred             HHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120          404 KVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK  480 (634)
Q Consensus       404 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  480 (634)
                      .+++.+.+   .+...+..+...+...|++++|.+.|+++...  .|+..++..++.++.+.|++++|.+.++.+.+.  
T Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--  765 (899)
T TIGR02917       690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--  765 (899)
T ss_pred             HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            77766652   34455666666667777777777777776654  344455666666666777777777776666652  


Q ss_pred             cccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      .+.+...+..++..|.+.|++++|.+.|+++  ..+++...+..++..+...|+ .+|+..++++++..|.++..+..++
T Consensus       766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            2344556666666677777777777777665  223345566666666666666 6666666666666666666666666


Q ss_pred             HHHhcCCCchHHHHHHHHHHhCCC
Q 047120          559 NMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .++...|++++|.++++++.+.+.
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC
Confidence            666666666666666666666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1e-32  Score=311.45  Aligned_cols=548  Identities=13%  Similarity=0.078  Sum_probs=376.4

Q ss_pred             hhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHH
Q 047120           15 QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY   94 (634)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~   94 (634)
                      ..+...+...++...+......+.+.. +.+..+++.+...+.+.|++   ++|.+.|+++....+ .+...|..+...+
T Consensus       333 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  407 (899)
T TIGR02917       333 RLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF---EKAAEYLAKATELDP-ENAAARTQLGISK  407 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            344444556666666666666666543 34556677777777777777   777777777664432 2455666777777


Q ss_pred             HcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 047120           95 SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR  174 (634)
Q Consensus        95 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  174 (634)
                      ...|++++|++.|+.+.+... .+......++..+.+.|++++|..+++.+.+.. +.++.++..+...|...|++++|.
T Consensus       408 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  485 (899)
T TIGR02917       408 LSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAR  485 (899)
T ss_pred             HhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHH
Confidence            777777777777777776431 122344555666777777777777777776643 345667777777777777777777


Q ss_pred             HHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---
Q 047120          175 QLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---  247 (634)
Q Consensus       175 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---  247 (634)
                      +.|+++.+   .+...+..+...+...|++++|.+.++++....| +..++..+...+.+.|+ .++|...++++..   
T Consensus       486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~  564 (899)
T TIGR02917       486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELNP  564 (899)
T ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCc
Confidence            77776542   2445666677777777777777777777766533 44566666667777776 7777777777654   


Q ss_pred             CCchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 047120          248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGG  321 (634)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~  321 (634)
                      .+...+..++..+...|++++|..+++.+.+   .+...|..+...|...|++++|...|+.+.+   .+...+..+...
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  644 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA  644 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3445566677777777777777777777653   4556777777777777777777777776643   345567777777


Q ss_pred             HHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047120          322 YVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE  400 (634)
Q Consensus       322 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  400 (634)
                      +...|++++|...|+++...   .| +..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|+++
T Consensus       645 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  720 (899)
T TIGR02917       645 YAVMKNYAKAITSLKRALEL---KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP  720 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence            77777777777777777643   34 35667777777777777777777777777654 445566667777777777777


Q ss_pred             HHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 047120          401 NAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI  478 (634)
Q Consensus       401 ~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  478 (634)
                      +|.+.|+.+.  .++..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+.+.+.
T Consensus       721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            7777777765  3444566667777777777777777777777642 334557777777777777777777777777662


Q ss_pred             cCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120          479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       479 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  556 (634)
                        .+++...++.++..+...|+ .+|+..++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..
T Consensus       800 --~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  876 (899)
T TIGR02917       800 --APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH  876 (899)
T ss_pred             --CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence              23456667777777777777 6677777766 3333 34566667777777777777777777777777777777777


Q ss_pred             HHHHHhcCCCchHHHHHHHHHH
Q 047120          557 LSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       557 l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      ++.+|.+.|++++|.+++++|.
T Consensus       877 l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       877 LALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHh
Confidence            7777777777777777777764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.8e-24  Score=244.38  Aligned_cols=537  Identities=13%  Similarity=0.036  Sum_probs=317.6

Q ss_pred             ccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccH----------------
Q 047120           24 CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW----------------   87 (634)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------   87 (634)
                      -++.+.+.+.+.++.... +-++.++..+++.+.+.|+.   ++|.+.++++.+..+. +...+                
T Consensus        41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~---~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~  115 (1157)
T PRK11447         41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDS---DGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQA  115 (1157)
T ss_pred             hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhH
Confidence            344555566666665432 33667788888888888988   8888888888755422 22221                


Q ss_pred             HHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcch-HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120           88 NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS-ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR  166 (634)
Q Consensus        88 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  166 (634)
                      ..+...+.+.|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++++.+..+ -+...+..+...+..
T Consensus       116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~  193 (1157)
T PRK11447        116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFS  193 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHc
Confidence            223346778889999999998888643 333221 11111222345788888888888888653 355667778888888


Q ss_pred             cCCHHHHHHHHhhCCCCCh------hH-----------------HH----------------------------------
Q 047120          167 CGYLEFARQLFDKMGIRDS------VS-----------------YN----------------------------------  189 (634)
Q Consensus       167 ~g~~~~A~~~~~~~~~~~~------~~-----------------~~----------------------------------  189 (634)
                      .|+.++|+..++++...+.      ..                 +.                                  
T Consensus       194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~  273 (1157)
T PRK11447        194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR  273 (1157)
T ss_pred             cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence            8888888888877532100      00                 00                                  


Q ss_pred             HHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCc---hHHH---------
Q 047120          190 SMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDL---ISWN---------  254 (634)
Q Consensus       190 ~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~---------  254 (634)
                      .....+...|++++|+..|++.....| +...+..+...+.+.++ .++|...|++..+  |+.   ..|.         
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-RARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            112345566777777777777766645 44556666666777777 7777777777655  221   1111         


Q ss_pred             ---HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHH----
Q 047120          255 ---SMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGG----  321 (634)
Q Consensus       255 ---~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~----  321 (634)
                         .....+.+.|++++|...|+++.+   .+...+..+...+...|++++|++.|+++.+  | +...+..+...    
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence               113345667777777777777654   3445566677777777777777777776653  2 22233333322    


Q ss_pred             --------------------------------------HHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccC
Q 047120          322 --------------------------------------YVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLG  362 (634)
Q Consensus       322 --------------------------------------~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~  362 (634)
                                                            +...|++++|++.|++..+.   .|+ ...+..+...+.+.|
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence                                                  33445555555555555422   332 233444444555555


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC----Chh---------HHHHHHHHHHHcCC
Q 047120          363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG----SVD---------HWNAMINGLAIHGL  429 (634)
Q Consensus       363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~~~  429 (634)
                      ++++|...++.+.+.. +.++..+..+...+...++.++|+..++.+...    +..         .+..+...+...|+
T Consensus       510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            5555555555554432 223333333333444455555555555554321    000         11223444555666


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHH
Q 047120          430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE  509 (634)
Q Consensus       430 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  509 (634)
                      .++|..+++   .  ..++...+..+...+.+.|++++|+..|+.+.+.  -+.+...+..++..|...|++++|++.++
T Consensus       589 ~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~  661 (1157)
T PRK11447        589 EAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA  661 (1157)
T ss_pred             HHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666554   1  1233445566667777777777777777777663  13345666777777777777777777777


Q ss_pred             hC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          510 DM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS------SYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       510 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+ ...|+ ...+..+..++...|++++|..+++++++..|.++.      .+..++.++...|++++|++.+++...
T Consensus       662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66 33443 445556666677777777777777777776654433      455567777777777777777777754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=4e-24  Score=241.47  Aligned_cols=517  Identities=12%  Similarity=0.018  Sum_probs=370.0

Q ss_pred             HHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHH-hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcC
Q 047120           19 LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS-FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG   97 (634)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~   97 (634)
                      .++..-++.+++.+.++.+.+.. +|+......+... ....|+.   ++|...|+++....+. +...+..+...+...
T Consensus       120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~---~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~  194 (1157)
T PRK11447        120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQR---PEAINQLQRLNADYPG-NTGLRNTLALLLFSS  194 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcc
Confidence            35677788999999998888653 4443322222222 2234776   8999999998866433 567788899999999


Q ss_pred             CCcchHHHHHHHHHHCCC------------------C--------------CCcchHH---------------------H
Q 047120           98 LDPKEALVMFCLMLDNGV------------------S--------------VDKFSAS---------------------L  124 (634)
Q Consensus        98 g~~~~A~~~~~~m~~~g~------------------~--------------p~~~~~~---------------------~  124 (634)
                      |+.++|+..++++.+...                  .              |+...+.                     .
T Consensus       195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~  274 (1157)
T PRK11447        195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA  274 (1157)
T ss_pred             CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence            999999999998765320                  0              1100000                     1


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh---hHHH----------
Q 047120          125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDS---VSYN----------  189 (634)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~----------  189 (634)
                      ....+...|++++|...++++++... .+...+..+...|.+.|++++|+..|++..+  |+.   ..|.          
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            12234466788888888888877542 2566777777888888888888888877643  211   1121          


Q ss_pred             --HHHHHHHhCCChHHHHHHHhhCccCCCC-hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhc
Q 047120          190 --SMIDGYVKSGNIESARELFDSMPIRERN-LISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKC  263 (634)
Q Consensus       190 --~li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~  263 (634)
                        .....+.+.|++++|++.|+++....|+ ...+..+...+...|+ .++|.+.|++..+  | +...+..+...+. .
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~  431 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYR-Q  431 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence              1234566788888888888888777554 3445556667777777 8888888888765  3 3344555555553 4


Q ss_pred             CChHHHHHHHhhCCCCC------------hhHHHHHHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCc
Q 047120          264 GKMDDAQALFDKMPKRD------------VVSWANMIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNGYS  328 (634)
Q Consensus       264 g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~  328 (634)
                      ++.++|..+++.+....            ...+..+...+...|++++|++.|++..+  | +...+..+...|.+.|++
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            56788888877665321            12344566778889999999999998875  3 556788889999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh---------HHHHHHHHhHhcCC
Q 047120          329 MKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK---------HGVALIDMYSKCGS  398 (634)
Q Consensus       329 ~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~  398 (634)
                      ++|+..++++...   .|+ ...+..+...+...++.++|...++.+......++..         .+..+...+...|+
T Consensus       512 ~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        512 SQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             HHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            9999999999854   453 3344444455678899999999998865433322221         22345677889999


Q ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       399 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      .++|.++++. ...++..+..+...+.+.|++++|++.|++..+.  .|+ ...+..++..+...|++++|++.++.+.+
T Consensus       589 ~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        589 EAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            9999999984 3446667888999999999999999999999986  555 66889999999999999999999998875


Q ss_pred             hcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          478 IHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-------NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       478 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      .   .| +...+..+..++...|++++|.++++++ ...|       +...+..+...+...|+.++|+..|++++....
T Consensus       666 ~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~  742 (1157)
T PRK11447        666 T---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG  742 (1157)
T ss_pred             c---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence            2   33 4556777888999999999999999987 2222       224566677888999999999999999987665


Q ss_pred             CCCc
Q 047120          549 SNSS  552 (634)
Q Consensus       549 ~~~~  552 (634)
                      ..|.
T Consensus       743 ~~~~  746 (1157)
T PRK11447        743 ITPT  746 (1157)
T ss_pred             CCCC
Confidence            5544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=1.2e-21  Score=211.22  Aligned_cols=227  Identities=13%  Similarity=0.021  Sum_probs=180.4

Q ss_pred             HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHH
Q 047120          348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAMINGLA  425 (634)
Q Consensus       348 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~  425 (634)
                      ...+..+..++.. ++.++|...+.......  |+......+...+...|++++|...|+++..  ++...+..+...+.
T Consensus       477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all  553 (987)
T PRK09782        477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ  553 (987)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence            4455555555555 78888888777766543  4544444455666789999999999987763  44456677788889


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120          426 IHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA  504 (634)
Q Consensus       426 ~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  504 (634)
                      +.|++++|...+++..+.  .|+. ..+..+.......|++++|...++.+.+.   .|+...|..+..++.+.|++++|
T Consensus       554 ~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA  628 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAA  628 (987)
T ss_pred             HCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999875  3543 34444444555679999999999999863   56778899999999999999999


Q ss_pred             HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          505 RNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       505 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +..+++. ...|+ ...+..+..++...|++++|+..++++++.+|.++..+..++.++...|++++|...+++..+...
T Consensus       629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999988 55665 557778888899999999999999999999999999999999999999999999999999976643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=2.4e-20  Score=201.28  Aligned_cols=535  Identities=11%  Similarity=0.018  Sum_probs=369.1

Q ss_pred             cCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHH
Q 047120           25 KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEAL  104 (634)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  104 (634)
                      ++...+...+++.++.. +-++.++..|.+.|.+.|++   ++|+..+++..+..  |+-..|..++..+   +++++|.
T Consensus        58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~---~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~  128 (987)
T PRK09782         58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHD---DRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV  128 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence            66666777777776554 33456777777888888887   77877777766543  3333333333333   6677777


Q ss_pred             HHHHHHHHCCCCCCc----------------------------------------chHHHH-HHHHhccCChHHHHHHHH
Q 047120          105 VMFCLMLDNGVSVDK----------------------------------------FSASLV-LKACSRLGLIEEGLQIHG  143 (634)
Q Consensus       105 ~~~~~m~~~g~~p~~----------------------------------------~~~~~l-l~~~~~~~~~~~a~~~~~  143 (634)
                      .+++++.+..  |+.                                        ...... .+.+.+.+++++|+..+.
T Consensus       129 ~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        129 TTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            7777776632  322                                        222222 445555666666666776


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC---CCChh
Q 047120          144 LLRKVAFGSDLFLQNCLISLYVR-CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLI  219 (634)
Q Consensus       144 ~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~p~~~  219 (634)
                      .+.+.++. +......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.+.++++...   .|...
T Consensus       207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~  284 (987)
T PRK09782        207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK  284 (987)
T ss_pred             HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence            66666532 33334455555555 244 66666655433456777888889999999999999999888765   23322


Q ss_pred             HHHHH------------------------------HHHHHhcCCcHHHHHHHHhhCCC----------------------
Q 047120          220 SWNSV------------------------------LNGYAQLKSGLQFAWQIFEKMPE----------------------  247 (634)
Q Consensus       220 ~~~~l------------------------------l~~~~~~~~~~~~a~~~~~~~~~----------------------  247 (634)
                      ++.-+                              +..+.+.+. .+.+.++...-+.                      
T Consensus       285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  363 (987)
T PRK09782        285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ-YDAAQKLLATLPANEMLEERYAVSVATRNKAEALR  363 (987)
T ss_pred             HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH-HHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence            22111                              233333333 4444444321111                      


Q ss_pred             ----------CCchHHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHHHHHHHHHHHcCC---hHHHHHH-----
Q 047120          248 ----------RDLISWNSMLHGCVKCGKMDDAQALFDKMPK------RDVVSWANMIDGYAKLGR---VDIARRL-----  303 (634)
Q Consensus       248 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~---~~~A~~~-----  303 (634)
                                .+......+.-...+.|+.++|..+|+....      .+.....-++..|.+.+.   ..++..+     
T Consensus       364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~  443 (987)
T PRK09782        364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP  443 (987)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence                      0122222223334577888899999888764      122344467777777665   2223222     


Q ss_pred             --------------------hhhCCC---C--ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 047120          304 --------------------FDEMPK---R--DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI  358 (634)
Q Consensus       304 --------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~  358 (634)
                                          +.....   +  +...|..+..++.. ++.++|+..+.+....   .|+......+...+
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al  519 (987)
T PRK09782        444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQA  519 (987)
T ss_pred             cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHH
Confidence                                111111   2  45677888877776 8899999988888744   57766555555666


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHH---HHHHHHHcCChHHHHH
Q 047120          359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA---MINGLAIHGLGELAFD  435 (634)
Q Consensus       359 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~  435 (634)
                      ...|++++|...++.+...  +|+...+..+..++.+.|++++|...++...+.++...+.   +.......|++++|..
T Consensus       520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~  597 (987)
T PRK09782        520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN  597 (987)
T ss_pred             HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence            7899999999999987654  4444556677888999999999999999887544433333   3334445599999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC
Q 047120          436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME  514 (634)
Q Consensus       436 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  514 (634)
                      .+++..+.  .|+...+..+..++.+.|++++|+..++.+...  -+.+...++.+..++...|++++|++.++++ ...
T Consensus       598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999975  678889999999999999999999999999873  2334677889999999999999999999987 555


Q ss_pred             CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          515 PN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       515 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      |+ ...+..+..++...|++++|+..+++++++.|.+..+....+++..+..+++.|.+-+++.-..++.
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            55 6788999999999999999999999999999999999999999999999999999999888666553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=2.4e-22  Score=192.10  Aligned_cols=441  Identities=15%  Similarity=0.151  Sum_probs=305.7

Q ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120           87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR  166 (634)
Q Consensus        87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  166 (634)
                      -..|..-.-+.|++.+|.+.-...-+.. +.+......+-..+.+..+.+...+.-....+.. .--..+|..+.+.+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            3344555556777777776655443322 1122222222333444445554444333333322 1234466667777777


Q ss_pred             cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHh
Q 047120          167 CGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE  243 (634)
Q Consensus       167 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~  243 (634)
                      .|++++|+.+++.+.+   ..+..|..+..++...|+.+.|.+.|.+..+..|+.....+-+..+.+             
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk-------------  195 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK-------------  195 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH-------------
Confidence            7777777777776643   245567777777777777777777777776666665544333333322             


Q ss_pred             hCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHhhhCCCCC---hhhHHH
Q 047120          244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--RD-VVSWANMIDGYAKLGRVDIARRLFDEMPKRD---VVACNA  317 (634)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~  317 (634)
                                        ..|++++|...|.+..+  |. ...|+.|.-.+-..|+...|+..|++..+-|   ...|-.
T Consensus       196 ------------------a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN  257 (966)
T KOG4626|consen  196 ------------------AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN  257 (966)
T ss_pred             ------------------hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence                              34455555555544433  22 2456666666666677777777777666533   246777


Q ss_pred             HHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120          318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC  396 (634)
Q Consensus       318 l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (634)
                      |...|...+.+++|+..|.+..   ...|+. ..+..+...|...|.++.|+..+++.++.. +.-+..|+.+..++-..
T Consensus       258 LGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~  333 (966)
T KOG4626|consen  258 LGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDK  333 (966)
T ss_pred             HHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhc
Confidence            7777777777788877777776   345653 556666666777788888888887777653 22356778888888888


Q ss_pred             CCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120          397 GSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       397 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      |++.+|.+.|.+..   .....+.+.|...|...|.+++|..+|....+  +.|. ....+.|...|-+.|++++|+..|
T Consensus       334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y  411 (966)
T KOG4626|consen  334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY  411 (966)
T ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence            88888888888766   23556788888999999999999999998886  4676 458889999999999999999999


Q ss_pred             HHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          473 ELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       473 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +++.+   +.|+ ...|+.+...|...|+.+.|+..+.++ .+.|. ....+.|...|...|++.+|+..|+.++++.|+
T Consensus       412 kealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  412 KEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            99876   4676 667999999999999999999999887 67777 558899999999999999999999999999999


Q ss_pred             CCchHHHHHHHHhcCCCchH
Q 047120          550 NSSSYVLLSNMFAGLGMWND  569 (634)
Q Consensus       550 ~~~~~~~l~~~~~~~g~~~~  569 (634)
                      .|++|..++..+---.+|.+
T Consensus       489 fpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  489 FPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             CchhhhHHHHHHHHHhcccc
Confidence            99999999988765555544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-21  Score=186.77  Aligned_cols=356  Identities=13%  Similarity=0.132  Sum_probs=293.7

Q ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHH
Q 047120          218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV---SWANMIDGY  291 (634)
Q Consensus       218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~  291 (634)
                      ..+|..+.+.+...|+ ++.|...++.+.+   ..+..|..+..++...|+.+.|.+.|.+..+-|+.   ..+.+...+
T Consensus       116 ae~ysn~aN~~kerg~-~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl  194 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQ-LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL  194 (966)
T ss_pred             HHHHHHHHHHHHHhch-HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence            3445555555555555 5555555555554   23456666777777888888888888877764332   234455666


Q ss_pred             HHcCChHHHHHHhhhCCC--CC-hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHH
Q 047120          292 AKLGRVDIARRLFDEMPK--RD-VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKG  367 (634)
Q Consensus       292 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a  367 (634)
                      ...|++.+|...+.+..+  |. .+.|..|...+...|+..+|+..|++..   .+.|+- ..|..+...+...+.++.|
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcchHH
Confidence            778999999988877664  32 4689999999999999999999999998   567874 5899999999999999999


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047120          368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLS  444 (634)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g  444 (634)
                      ...+..+.... +.....+..+.-.|-..|.++-|+..|++..+  | =+..|+.|..++-..|+..+|...+.+.... 
T Consensus       272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-  349 (966)
T KOG4626|consen  272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-  349 (966)
T ss_pred             HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence            99998887653 33457777888889999999999999999874  3 3458999999999999999999999999874 


Q ss_pred             CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHH
Q 047120          445 IEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIW  520 (634)
Q Consensus       445 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~  520 (634)
                       .|+ ....+.|...+...|.+++|.++|.....   +.|. ...++.|...|-++|++++|+..++++ .++|+ ...|
T Consensus       350 -~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~  425 (966)
T KOG4626|consen  350 -CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL  425 (966)
T ss_pred             -CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence             676 56899999999999999999999999876   3555 556899999999999999999999998 88898 5699


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       521 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      +.+...|...|+...|...+.+++..+|.-.+++..|+.+|...|++.+|++-++...+....
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999999999999999999999999776543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=6.1e-19  Score=187.44  Aligned_cols=417  Identities=12%  Similarity=-0.008  Sum_probs=259.1

Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC
Q 047120          123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSG  199 (634)
Q Consensus       123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g  199 (634)
                      ......+.+.|+++.|...|++.++.  .|++..|..+..+|.+.|++++|++.++...+  | +...|..+..++...|
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg  208 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG  208 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            34445556667777777777766653  34555666666666677777777766666543  2 3446666666677777


Q ss_pred             ChHHHHHHHhhCccCCCC-hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047120          200 NIESARELFDSMPIRERN-LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK  278 (634)
Q Consensus       200 ~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  278 (634)
                      ++++|+.-|.......+. ......++........ ...+...++.-.                                
T Consensus       209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a-~~~~~~~l~~~~--------------------------------  255 (615)
T TIGR00990       209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFA-ESKAKEILETKP--------------------------------  255 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH-HHHHHHHHhcCC--------------------------------
Confidence            777766665544332111 1111111111111000 112222221111                                


Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCC---hhhHHHHHHHH---HHcCCchHHHHHHHHHHhcCCCCCC-HhHH
Q 047120          279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD---VVACNAMMGGY---VRNGYSMKALEIFDNMQCELYLHPD-DASL  351 (634)
Q Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~  351 (634)
                      ++...+..+.. |...........-++...+.+   ...+..+...+   ...+++++|++.|+.....+...|+ ...+
T Consensus       256 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~  334 (615)
T TIGR00990       256 ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL  334 (615)
T ss_pred             CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            11111111111 111111111111111111111   11111111111   2346778888888888765333443 3456


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcC
Q 047120          352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHG  428 (634)
Q Consensus       352 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~  428 (634)
                      ..+...+...|++++|+..++..++.. +.....+..+..++...|++++|...|+++.   ..+...|..+...+...|
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g  413 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG  413 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            666777778888888888888887753 3345677778888888888888888888765   335678888888899999


Q ss_pred             ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL  507 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  507 (634)
                      ++++|+..|++..+.  .|+ ...+..+..++.+.|++++|+..++.+.+.  .+.+...++.+...+...|++++|++.
T Consensus       414 ~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       414 EFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             CHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            999999999998875  555 557777888888999999999999988763  233467788889999999999999999


Q ss_pred             HHhC-CCCCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          508 IEDM-PMEPND-V-------IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       508 ~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      |++. .+.|+. .       .++..+..+...|++++|+.+++++++++|.+...+..++.++.+.|++++|++++++..
T Consensus       490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9886 444431 1       112222223446899999999999999999888889999999999999999999999886


Q ss_pred             hC
Q 047120          579 ER  580 (634)
Q Consensus       579 ~~  580 (634)
                      +.
T Consensus       570 ~l  571 (615)
T TIGR00990       570 EL  571 (615)
T ss_pred             HH
Confidence            65

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=3.2e-19  Score=180.21  Aligned_cols=290  Identities=16%  Similarity=0.140  Sum_probs=198.5

Q ss_pred             HHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChH
Q 047120          291 YAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHID  365 (634)
Q Consensus       291 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~  365 (634)
                      +...|++++|...|+++.+   .+..++..+...+...|++++|+.+++.+.......+.  ...+..+...+...|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            3444555555555555543   12334555555666666666666666665543111110  134455555566666666


Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC--------hhHHHHHHHHHHHcCChHHHHHHH
Q 047120          366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--------VDHWNAMINGLAIHGLGELAFDLL  437 (634)
Q Consensus       366 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~A~~~~  437 (634)
                      .|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+        ...+..++..+...|++++|...|
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            6666666665542 3345556666666666666666666666654211        113456677788889999999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 047120          438 MEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDM-PM  513 (634)
Q Consensus       438 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  513 (634)
                      +++.+.  .|+ ...+..+...+.+.|++++|.++++++...   .|+  ...+..++.+|.+.|++++|...++++ ..
T Consensus       204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            988875  344 457778888899999999999999998763   233  456788889999999999999999987 55


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc---CCCchHHHHHHHHHHhCCCccCCc
Q 047120          514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG---LGMWNDARRVRSMMKERNLKKLPG  587 (634)
Q Consensus       514 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~  587 (634)
                      .|+...+..++..+.+.|++++|..+++++++..|+++. +..+...+..   .|+.++++.++++|.+.++++.|.
T Consensus       279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            677777788888899999999999999999999887764 4444444332   568999999999999998888885

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.6e-17  Score=167.84  Aligned_cols=523  Identities=12%  Similarity=0.048  Sum_probs=332.0

Q ss_pred             hHHHHHh--hcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcch-HHHHH
Q 047120           50 TKLVASF--SSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS-ASLVL  126 (634)
Q Consensus        50 ~~li~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll  126 (634)
                      ..|-+++  ...+++   ..|...|.......+..-+...-.+-..+.+.|+.+.|+..|.+..+  +.|+... +..|-
T Consensus       166 ~LlGkA~i~ynkkdY---~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~  240 (1018)
T KOG2002|consen  166 ALLGKARIAYNKKDY---RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALG  240 (1018)
T ss_pred             HHHHHHHHHhccccH---HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHH
Confidence            3344443  355677   88888888754332222222222333455577888888888888887  3353322 22221


Q ss_pred             HHHhc---cCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHh
Q 047120          127 KACSR---LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR------DSVSYNSMIDGYVK  197 (634)
Q Consensus       127 ~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~  197 (634)
                      ..-..   ...+..+...+...-... .-|+.+.+.|.+.|.-.|++..++.+.+.+...      -..+|-.+.++|-.
T Consensus       241 ~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha  319 (1018)
T KOG2002|consen  241 EVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA  319 (1018)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            11112   223445555555554433 346777888888888888888888887766432      12356677888888


Q ss_pred             CCChHHHHHHHhhCccCCCChhHH--HHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcC----ChHH
Q 047120          198 SGNIESARELFDSMPIRERNLISW--NSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCG----KMDD  268 (634)
Q Consensus       198 ~g~~~~A~~~~~~m~~~~p~~~~~--~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g----~~~~  268 (634)
                      .|++++|...|.+.....|+.+++  .-+...+.+.++ ++.+...|+++..  | +..+...+...|...+    ..+.
T Consensus       320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d-le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~  398 (1018)
T KOG2002|consen  320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD-LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK  398 (1018)
T ss_pred             hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch-HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence            888888888888887776665443  345677777788 8888888888776  3 3345555566666554    5567


Q ss_pred             HHHHHhhCCC---CChhHHHHHHHHHHHcCChH------HHHHHhhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHHH
Q 047120          269 AQALFDKMPK---RDVVSWANMIDGYAKLGRVD------IARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNM  338 (634)
Q Consensus       269 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  338 (634)
                      |..++.+..+   .|...|-.+..+|....-+.      .|..++.... ...+...|.+...+...|++.+|...|...
T Consensus       399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A  478 (1018)
T KOG2002|consen  399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA  478 (1018)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence            7777777765   34566666666665544332      3333333222 346667888888888888888888888877


Q ss_pred             HhcC--CCCCCHh------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120          339 QCEL--YLHPDDA------SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE  410 (634)
Q Consensus       339 ~~~~--~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (634)
                      ....  ...+|..      +--.+....-..++.+.|.++|..+.+.. +.-+..|..+.-+....+...+|...++.+.
T Consensus       479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l  557 (1018)
T KOG2002|consen  479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDAL  557 (1018)
T ss_pred             hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence            6330  0122321      22233444556678888888888887642 1122233333333333466777777777765


Q ss_pred             ---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHH
Q 047120          411 ---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAH------------AGLVKEGLLCFEL  474 (634)
Q Consensus       411 ---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~  474 (634)
                         +.++..+..+...+.....+..|.+-|+...+.- ..+|..+...|.+.|.+            .+..++|+++|.+
T Consensus       558 ~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k  637 (1018)
T KOG2002|consen  558 NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK  637 (1018)
T ss_pred             hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence               4566677777777887777877877666655432 22466666666665542            3456777777777


Q ss_pred             hHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC
Q 047120          475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD--SSN  550 (634)
Q Consensus       475 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~  550 (634)
                      +.+  .-+.+...-|.+.-.++..|++.+|..+|.++  ....+..+|..+...|...|++..|++.|+...+..  .++
T Consensus       638 vL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~  715 (1018)
T KOG2002|consen  638 VLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR  715 (1018)
T ss_pred             HHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            765  22445666677777888888888888888877  223355677788888888888888888888887665  356


Q ss_pred             CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +.....|+.++.+.|++.+|.+.+.......+
T Consensus       716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            67788888888888888888888777755543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=1.4e-17  Score=177.11  Aligned_cols=421  Identities=14%  Similarity=0.027  Sum_probs=279.7

Q ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120           87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR  166 (634)
Q Consensus        87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  166 (634)
                      +......+.+.|++++|+..|++.++  +.|+...|..+..++.+.|++++|...+..+++... .+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            45667788899999999999999987  568888899999999999999999999999998652 356688889999999


Q ss_pred             cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHh
Q 047120          167 CGYLEFARQLFDKMGIR---DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE  243 (634)
Q Consensus       167 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~  243 (634)
                      .|++++|+..|......   +......++..+........+...+..-.   ++...+..+.. +..... ......-+.
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~---~~~~~~~~~~~-~~~~~~-~~~~~~~~~  281 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP---ENLPSVTFVGN-YLQSFR-PKPRPAGLE  281 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHH-HHHHcc-CCcchhhhh
Confidence            99999999887654321   11122222222222111233333333222   22222222222 211111 111111111


Q ss_pred             hCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHH---HHHcCChHHHHHHhhhCCC------CChhh
Q 047120          244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG---YAKLGRVDIARRLFDEMPK------RDVVA  314 (634)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~------~~~~~  314 (634)
                      ...+.+...                            ...+..+...   ....+++++|.+.|+...+      .....
T Consensus       282 ~~~~~~~~~----------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a  333 (615)
T TIGR00990       282 DSNELDEET----------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA  333 (615)
T ss_pred             ccccccccc----------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence            111100000                            0000000000   0123456666666665543      13345


Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY  393 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  393 (634)
                      |+.+...+...|++++|+..|++...   +.|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus       334 ~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~  409 (615)
T TIGR00990       334 LNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH  409 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            67777777888888888888888873   3565 4467777777778888888888888877653 44567788888888


Q ss_pred             HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 047120          394 SKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGL  469 (634)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~  469 (634)
                      ...|++++|+..|++...   .+...+..+...+.+.|++++|+..|++..+.  .|+ ...+..+...+...|++++|+
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~  487 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI  487 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence            888889988888888763   34557777888888999999999999988864  454 568888888999999999999


Q ss_pred             HHHHHhHHhcCcccCh-h-------HHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 047120          470 LCFELMRRIHKLEPEL-Q-------HYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPV  539 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~  539 (634)
                      ..|+.+...   .|+. .       .++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...
T Consensus       488 ~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~  564 (615)
T TIGR00990       488 EKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL  564 (615)
T ss_pred             HHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            999988763   2221 1       1222223344579999999999886 55565 45788889999999999999999


Q ss_pred             HHHHhccCCCCCc
Q 047120          540 AKHLIGMDSSNSS  552 (634)
Q Consensus       540 ~~~~~~~~p~~~~  552 (634)
                      +++++++.+....
T Consensus       565 ~e~A~~l~~~~~e  577 (615)
T TIGR00990       565 FERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHhccHHH
Confidence            9999988765443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.4e-16  Score=161.23  Aligned_cols=541  Identities=14%  Similarity=0.037  Sum_probs=387.5

Q ss_pred             hHHHHHHHHHH--HhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCC---cch
Q 047120           28 NDVNQIHARMI--TTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLD---PKE  102 (634)
Q Consensus        28 ~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~  102 (634)
                      ..+..++....  .....||+.+-.  -..+.++|..   +.|...|.+..+.+| .++.++-.|.-.-....+   +..
T Consensus       181 ~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~---~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~  254 (1018)
T KOG2002|consen  181 RGALKYYKKALRINPACKADVRIGI--GHCFWKLGMS---EKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK  254 (1018)
T ss_pred             HHHHHHHHHHHhcCcccCCCccchh--hhHHHhccch---hhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence            34455555533  234556654332  2456789998   999999998876544 244444433333333333   446


Q ss_pred             HHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 047120          103 ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS--DLFLQNCLISLYVRCGYLEFARQLFDKM  180 (634)
Q Consensus       103 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~  180 (634)
                      ++.++...-..+ .-|+...+.|.+.+.-.|++..+..+...+......-  -...|--+.++|...|++++|...|-+.
T Consensus       255 ~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  255 GVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             HHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            666666655422 3466678888888999999999999999998765221  1234566789999999999999999876


Q ss_pred             CC--CC--hhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHH-HhcC---CcHHHHHHHHhhCCC---CC
Q 047120          181 GI--RD--SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY-AQLK---SGLQFAWQIFEKMPE---RD  249 (634)
Q Consensus       181 ~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~-~~~~---~~~~~a~~~~~~~~~---~~  249 (634)
                      ..  +|  +..+-.+...+.+.|+++.+...|+.+....|+...-..++.++ +..+   ...+.|..++.+..+   .|
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d  413 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD  413 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence            54  33  34566788999999999999999999988877766555555444 3332   126888888888777   35


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHhhCC--------CCChhHHHHHHHHHHHcCChHHHHHHhhhCCC-------CCh--
Q 047120          250 LISWNSMLHGCVKCGKMDDAQALFDKMP--------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK-------RDV--  312 (634)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--  312 (634)
                      ...|-.+...+....-+ .++..|..+.        ...+...|.+...+...|++++|...|+....       ++.  
T Consensus       414 ~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~  492 (1018)
T KOG2002|consen  414 SEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK  492 (1018)
T ss_pred             HHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence            56666666665544333 2244444332        36788999999999999999999999987653       222  


Q ss_pred             ----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120          313 ----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV  387 (634)
Q Consensus       313 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  387 (634)
                          .+-..+...+-..++++.|.+.|+.+...   .|..+. |..++......+...+|...++.+.+.. ..++..++
T Consensus       493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars  568 (1018)
T KOG2002|consen  493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS  568 (1018)
T ss_pred             cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence                23334566677788999999999999955   677654 4444434445678889999998887753 45667777


Q ss_pred             HHHHHhHhcCCHHHHHHHHHhcc-----CCChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIE-----DGSVDHWNAMINGLAI------------HGLGELAFDLLMEMERLSIEPDDI  450 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~g~~p~~~  450 (634)
                      .+...+.+..++..|.+-|+.+.     .+|..+.-+|...|.+            .+..++|+++|.+.++.. +-|..
T Consensus       569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y  647 (1018)
T KOG2002|consen  569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY  647 (1018)
T ss_pred             HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence            78889999999988888666654     2344444455554432            234688999999988752 23556


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWRTLLSA  526 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~  526 (634)
                      .-+.+.-.++..|++.+|..+|..+++.  ......+|-.+.++|..+|++-.|+++|+..    .-..+......|..+
T Consensus       648 AANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara  725 (1018)
T KOG2002|consen  648 AANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA  725 (1018)
T ss_pred             hccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            7777888899999999999999999883  2334567889999999999999999999886    224567788999999


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC-------------------CCchHHHHHHHHHHhCCCc
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL-------------------GMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~  583 (634)
                      +...|.+.+|.+.+..++...|.++..-..++.+..+.                   +..+.|.++|..|...+-+
T Consensus       726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999888877765433                   3566788888888776654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=3.2e-18  Score=172.89  Aligned_cols=286  Identities=19%  Similarity=0.133  Sum_probs=226.4

Q ss_pred             HHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC-C------hhhHHHHHHHHHHcC
Q 047120          257 LHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR-D------VVACNAMMGGYVRNG  326 (634)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~g  326 (634)
                      ...+...|++++|...|+++.+   .+..++..+...+...|++++|..+++.+... +      ...+..++..|.+.|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3345567888888888888765   23456777888888888888888888877642 1      245777888889999


Q ss_pred             CchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHhHhcCCHHHH
Q 047120          327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN----GKHGVALIDMYSKCGSIENA  402 (634)
Q Consensus       327 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A  402 (634)
                      ++++|+.+|+++.+.  -.++..++..++..+...|++++|...++.+.+.+..+.    ...+..+...+.+.|++++|
T Consensus       122 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        122 LLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            999999999998853  234567888888888999999999999998887653322    22455677788899999999


Q ss_pred             HHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 047120          403 IKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH  479 (634)
Q Consensus       403 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  479 (634)
                      ...|+++.+   .+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+. 
T Consensus       200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  278 (389)
T PRK11788        200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-  278 (389)
T ss_pred             HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            999998763   3455788889999999999999999999987532222457888999999999999999999999873 


Q ss_pred             CcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHhccC
Q 047120          480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRN---YENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       480 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~  547 (634)
                        .|+...+..++..+.+.|++++|.++++++ ...|+...+..++..+..   .|+.+++..+++++++..
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence              567677788999999999999999999987 667999999988887664   568889999888888644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=6.1e-17  Score=175.27  Aligned_cols=406  Identities=10%  Similarity=-0.022  Sum_probs=199.6

Q ss_pred             CCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 047120          117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMID  193 (634)
Q Consensus       117 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  193 (634)
                      .++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.+++++...   .+...+..++.
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~   91 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL   91 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344444555566666777777777776665522 23344566666667777777777777766422   23445566666


Q ss_pred             HHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHH
Q 047120          194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQ  270 (634)
Q Consensus       194 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~  270 (634)
                      .+...|++++|+..+++.....|+...+..+...+...++ .+.|...++++.+  | +...+..+...+...+..+.|+
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~-~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGR-HWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence            6667777777777776666554443334444444444444 5555555555444  2 2222233333444444444444


Q ss_pred             HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHH-----HcCCc---hHHHHHHHHHHhcC
Q 047120          271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV-----RNGYS---MKALEIFDNMQCEL  342 (634)
Q Consensus       271 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~---~~A~~~~~~m~~~~  342 (634)
                      +.++.+.+ ++.....+        .               ......++....     ..+++   ++|++.++.+....
T Consensus       171 ~~l~~~~~-~p~~~~~l--------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~  226 (765)
T PRK10049        171 GAIDDANL-TPAEKRDL--------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW  226 (765)
T ss_pred             HHHHhCCC-CHHHHHHH--------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence            44443332 11100000        0               000111111111     11222   55666666666432


Q ss_pred             CCCCCHh-HHH----HHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC---
Q 047120          343 YLHPDDA-SLV----IVLSAIAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS---  413 (634)
Q Consensus       343 ~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---  413 (634)
                      ...|+.. .+.    ..+.++...|++++|+..|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++.+.+   
T Consensus       227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~  305 (765)
T PRK10049        227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETI  305 (765)
T ss_pred             ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence            2233221 111    1122334556667777777766665421 11 111223556666666666666666654221   


Q ss_pred             ----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120          414 ----VDHWNAMINGLAIHGLGELAFDLLMEMERLSI-----------EPDD---ITFTGLLNACAHAGLVKEGLLCFELM  475 (634)
Q Consensus       414 ----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~  475 (634)
                          ...+..+..++...|++++|..+++++.....           .|+.   ..+..+...+...|++++|+++++++
T Consensus       306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a  385 (765)
T PRK10049        306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL  385 (765)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                12344445556666666666666666665310           1121   12334444555555666666555555


Q ss_pred             HHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       476 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      ...  .+.+...+..++..+...|++++|++.++++ ...|+ ...+..++..+...|++++|+.+++++++..|+++
T Consensus       386 l~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        386 AYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            442  1223444555555555555555555555554 33344 33444444445555555555555555555555555

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.83  E-value=1.7e-17  Score=175.68  Aligned_cols=349  Identities=11%  Similarity=0.006  Sum_probs=181.5

Q ss_pred             HhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChh-HHHHHHHHHHhcCCcHHH
Q 047120          165 VRCGYLEFARQLFDKMGIR------DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI-SWNSVLNGYAQLKSGLQF  237 (634)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~ll~~~~~~~~~~~~  237 (634)
                      .+..+++...-+|..-++.      +......++..+.+.|++++|+.+++......|+.. ....++.+....|+ .+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~-~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ-PDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC-HHH
Confidence            4567787777777666542      333455667778888999999988888877755543 23333334444455 666


Q ss_pred             HHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhh
Q 047120          238 AWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA  314 (634)
Q Consensus       238 a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  314 (634)
                      |...++++..  | +...+..+...+.+.|++++|...++++.+.+                            ..+...
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~~a  146 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNSQI  146 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHH
Confidence            6666666554  2 23344444455555555555555555443200                            012334


Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS  394 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  394 (634)
                      +..+...+...|++++|+..++.+...   .|+.......+..+...|++++|...++.+.+....++......+...+.
T Consensus       147 ~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~  223 (656)
T PRK15174        147 FALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC  223 (656)
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            444444455555555555555444322   22221111111223444555555555554444322222222333344455


Q ss_pred             hcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 047120          395 KCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGEL----AFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVK  466 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~  466 (634)
                      ..|++++|+..++++.   ..+...+..+...+...|++++    |...|++..+.  .|+ ...+..+...+...|+++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Confidence            5555555555555443   1234445555555566666553    56666665553  343 335556666666666666


Q ss_pred             HHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHH
Q 047120          467 EGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVI-WRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       467 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                      +|...++.+...   .|+ ...+..+..+|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...|+++
T Consensus       302 eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        302 KAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            666666665542   222 334555566666666666666666655 33444332 222344556666666666666666


Q ss_pred             hccCCCC
Q 047120          544 IGMDSSN  550 (634)
Q Consensus       544 ~~~~p~~  550 (634)
                      ++..|.+
T Consensus       379 l~~~P~~  385 (656)
T PRK15174        379 IQARASH  385 (656)
T ss_pred             HHhChhh
Confidence            6666553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=3.2e-16  Score=166.11  Aligned_cols=444  Identities=11%  Similarity=0.016  Sum_probs=290.6

Q ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 047120           87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF-SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV  165 (634)
Q Consensus        87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  165 (634)
                      |...|.. .+.|+++.|++.|++..+.  .|+.. ....++..+...|+.++|+..+++.... -..+......+...|.
T Consensus        38 y~~aii~-~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~  113 (822)
T PRK14574         38 YDSLIIR-ARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR  113 (822)
T ss_pred             HHHHHHH-HhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence            4444443 3678888888888888773  45542 2227777777778888888888877621 1112222333355677


Q ss_pred             hcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHH
Q 047120          166 RCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF  242 (634)
Q Consensus       166 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~  242 (634)
                      ..|++++|+++|+++.+  | +...+..++..+...++.++|++.++++....|+...+..++..+...++ ...|...+
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~-~~~AL~~~  192 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR-NYDALQAS  192 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch-HHHHHHHH
Confidence            77888888888887754  2 44566677777778888888888888887777776555333333333333 43466666


Q ss_pred             hhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH
Q 047120          243 EKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM  319 (634)
Q Consensus       243 ~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~  319 (634)
                      +++.+  | +...+..++.++.+.|-...|.++..+-..  ..+-......     ..+.|.+..+....++.       
T Consensus       193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l-----~~~~~a~~vr~a~~~~~-------  258 (822)
T PRK14574        193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQL-----ERDAAAEQVRMAVLPTR-------  258 (822)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHH-----HHHHHHHHHhhcccccc-------
Confidence            66655  3 334445555666666666666665554321  1111110000     01111111111110000       


Q ss_pred             HHHHHcC---CchHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120          320 GGYVRNG---YSMKALEIFDNMQCELYLHPDDA-----SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID  391 (634)
Q Consensus       320 ~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  391 (634)
                         ...+   -.+.|+.-++.+....+-.|...     ...-.+.++...++..+++..++.+...+.+....+...+.+
T Consensus       259 ---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad  335 (822)
T PRK14574        259 ---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS  335 (822)
T ss_pred             ---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence               0011   12455555666554323334321     222345567788889999999999988887766778888999


Q ss_pred             HhHhcCCHHHHHHHHHhccCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH--
Q 047120          392 MYSKCGSIENAIKVFEQIEDG---------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-----------EPDD--  449 (634)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~--  449 (634)
                      +|...+++++|+.+|+.+...         +......|..+|...+++++|..+++++.+...           .|++  
T Consensus       336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~  415 (822)
T PRK14574        336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW  415 (822)
T ss_pred             HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence            999999999999999887532         222356788899999999999999999987311           1332  


Q ss_pred             -HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 047120          450 -ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSA  526 (634)
Q Consensus       450 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~  526 (634)
                       ..+..++..+.-.|++.+|++.++.+..  .-+-|......+.+.+...|.+.+|+..++.+ ...|+ ..+....+.+
T Consensus       416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~  493 (822)
T PRK14574        416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET  493 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence             2445567778899999999999999976  33557888899999999999999999999877 45666 4566778888


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchH
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSY  554 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~  554 (634)
                      +...|++++|..+.+++++..|+++..-
T Consensus       494 al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        494 AMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            8899999999999999999999988543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=6.9e-17  Score=174.83  Aligned_cols=397  Identities=11%  Similarity=0.017  Sum_probs=258.3

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh-hHHHHHHHH
Q 047120          152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL-ISWNSVLNG  227 (634)
Q Consensus       152 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~ll~~  227 (634)
                      .++....-.+......|+.++|++++++...   .+...+..+...+...|++++|+++|++.....|+. ..+..+...
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~   92 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT   92 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3444555566677778888888888887653   234457888888888888888888888877664543 334444445


Q ss_pred             HHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHh
Q 047120          228 YAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF  304 (634)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (634)
                      +...++ .++|...++++..  | +.. +..+..++...|+.++|+..++++.+.+                        
T Consensus        93 l~~~g~-~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~------------------------  146 (765)
T PRK10049         93 LADAGQ-YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA------------------------  146 (765)
T ss_pred             HHHCCC-HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------
Confidence            555555 6666665555543  2 222 4444444445555555555554443200                        


Q ss_pred             hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh------HHHHHHHHH-----HccCCh---HHHHHH
Q 047120          305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA------SLVIVLSAI-----AQLGHI---DKGVAI  370 (634)
Q Consensus       305 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~  370 (634)
                          ..+...+..+...+...|..++|+..++....    .|+..      ....++...     ...+++   +.|+..
T Consensus       147 ----P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        147 ----PQTQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ  218 (765)
T ss_pred             ----CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence                01222333344444444555555554443331    22210      011111111     112233   677888


Q ss_pred             HHHHHHc-CCCCchh-HH-HH---HHHHhHhcCCHHHHHHHHHhccCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          371 HRYLEKD-QFSLNGK-HG-VA---LIDMYSKCGSIENAIKVFEQIEDGS---VD-HWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       371 ~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                      ++.+.+. ...|+.. .+ ..   .+..+...|++++|+..|+++.+.+   +. .-..+...|...|++++|+..|+++
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~  298 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL  298 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            8887754 2223221 11 11   1334567799999999999988532   21 2233577899999999999999998


Q ss_pred             HHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------cccC---hhHHHHHHHHHhccCCHHHH
Q 047120          441 ERLSIEP---DDITFTGLLNACAHAGLVKEGLLCFELMRRIHK----------LEPE---LQHYGCMVDILGRAGHIEAA  504 (634)
Q Consensus       441 ~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A  504 (634)
                      .+.....   .......+..++...|++++|..+++.+.....          -.|+   ...+..++..+...|++++|
T Consensus       299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA  378 (765)
T PRK10049        299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA  378 (765)
T ss_pred             hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence            8643111   124566677788999999999999999886321          0122   23456678889999999999


Q ss_pred             HHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          505 RNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       505 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +++++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++..+.+.|++++|..+++++.+...
T Consensus       379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            9999998 3 3344678889999999999999999999999999999999999999999999999999999999977543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=1.1e-16  Score=169.42  Aligned_cols=341  Identities=12%  Similarity=-0.037  Sum_probs=192.0

Q ss_pred             HhccCChHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHH
Q 047120          129 CSRLGLIEEGLQIHGLLRKVAF--GSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIES  203 (634)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  203 (634)
                      +.++.+++..--.+....+..-  .-+..-...++..+.+.|++++|..+++....   .+...+..++.+....|++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence            4456677766555555443211  11222334556777889999999999988753   245566777788888999999


Q ss_pred             HHHHHhhCccCCCCh-hHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 047120          204 ARELFDSMPIRERNL-ISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPK-  278 (634)
Q Consensus       204 A~~~~~~m~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  278 (634)
                      |++.++++....|+. ..+..+...+...|+ .+.|...+++...  | +...+..+...+...|++++|...++.+.. 
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~-~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ-YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            999999999886665 456666777788888 9999999999876  3 345666677777777777777777765532 


Q ss_pred             -CCh-hHHHHHHHHHHHcCChHHHHHHhhhCCCC----ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHH
Q 047120          279 -RDV-VSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASL  351 (634)
Q Consensus       279 -~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~  351 (634)
                       |+. ..+..+ ..+...|++++|...++.+.+.    +...+..+...+...|++++|+..++++...   .| +...+
T Consensus       174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p~~~~~~  249 (656)
T PRK15174        174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GLDGAALR  249 (656)
T ss_pred             CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHH
Confidence             222 222222 2345556666666655554331    1122233344555555555555555555532   22 22334


Q ss_pred             HHHHHHHHccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHc
Q 047120          352 VIVLSAIAQLGHIDK----GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH  427 (634)
Q Consensus       352 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  427 (634)
                      ..+...+...|++++    |...++.+.+.. +.+..                               .+..+...+...
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~-------------------------------a~~~lg~~l~~~  297 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVR-------------------------------IVTLYADALIRT  297 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHH-------------------------------HHHHHHHHHHHC
Confidence            444444444454443    444444444332 22333                               444455555555


Q ss_pred             CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHH
Q 047120          428 GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAAR  505 (634)
Q Consensus       428 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~  505 (634)
                      |++++|+..+++..+.  .|+ ...+..+..++.+.|++++|...++.+...   .|+. ..+..+..++...|++++|.
T Consensus       298 g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~  372 (656)
T PRK15174        298 GQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAE  372 (656)
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHH
Confidence            5555555555555443  333 234444445555555555555555555432   2222 12222344455555555555


Q ss_pred             HHHHhC
Q 047120          506 NLIEDM  511 (634)
Q Consensus       506 ~~~~~~  511 (634)
                      +.|+++
T Consensus       373 ~~l~~a  378 (656)
T PRK15174        373 SVFEHY  378 (656)
T ss_pred             HHHHHH
Confidence            555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=1.4e-14  Score=153.66  Aligned_cols=429  Identities=12%  Similarity=0.020  Sum_probs=287.7

Q ss_pred             HHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHH--HHHHHhCCChHH
Q 047120          127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD-SVSYNSM--IDGYVKSGNIES  203 (634)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l--i~~~~~~g~~~~  203 (634)
                      -...+.|+++.|+..++++.+....-.+.++ .++..+...|+.++|+..+++...|+ ...+..+  ...+...|++++
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3456789999999999999886533222344 78888888899999999999887653 3344444  557888899999


Q ss_pred             HHHHHhhCccCCCCh-hHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 047120          204 ARELFDSMPIRERNL-ISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPK--  278 (634)
Q Consensus       204 A~~~~~~m~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  278 (634)
                      |+++|+++.+..|+. ..+..++..+...++ .++|.+.++++..  |+...+..++..+...++..+|++.++++.+  
T Consensus       121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q-~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        121 ALALWQSSLKKDPTNPDLISGMIMTQADAGR-GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence            999999998886654 444455566666666 7777777777766  3333332222233334444446666666653  


Q ss_pred             C-ChhHHHHHHHHHHHcCChHHHHHHhhhCCCC-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 047120          279 R-DVVSWANMIDGYAKLGRVDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS  356 (634)
Q Consensus       279 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~  356 (634)
                      | +...+..+...+.+.|-...|.++..+-++- +...+..+        +.+.|.+..+...     .|+.        
T Consensus       200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~-----~~~~--------  258 (822)
T PRK14574        200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAV-----LPTR--------  258 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcc-----cccc--------
Confidence            3 3445555556666666666666555544320 00011000        0112222221111     1100        


Q ss_pred             HHHccCC---hHHHHHHHHHHHHc-CC-CCchhH----HHHHHHHhHhcCCHHHHHHHHHhccCC----ChhHHHHHHHH
Q 047120          357 AIAQLGH---IDKGVAIHRYLEKD-QF-SLNGKH----GVALIDMYSKCGSIENAIKVFEQIEDG----SVDHWNAMING  423 (634)
Q Consensus       357 ~~~~~~~---~~~a~~~~~~~~~~-~~-~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~  423 (634)
                        ...+.   .+.|..-++.+... +- ++....    ..-.+-++...+++.++++.|+.+...    ...+-..+..+
T Consensus       259 --~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada  336 (822)
T PRK14574        259 --SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA  336 (822)
T ss_pred             --cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence              01112   23444444544432 21 222122    223455677889999999999999843    23356778899


Q ss_pred             HHHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc----------ccC---h
Q 047120          424 LAIHGLGELAFDLLMEMERLSI-----EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL----------EPE---L  485 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~  485 (634)
                      |...+++++|..+++.+.....     .++......|..++...+++++|..+++.+.+....          .|+   .
T Consensus       337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~  416 (822)
T PRK14574        337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI  416 (822)
T ss_pred             HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence            9999999999999999976431     223334578899999999999999999999872110          122   2


Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      ..+..++..+.-.|++.+|++.++++  ..+-|......+...+...|.+.+|+..++.+..++|.+..+....+..+..
T Consensus       417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~  496 (822)
T PRK14574        417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA  496 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence            23456778889999999999999998  3345677889999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhC
Q 047120          564 LGMWNDARRVRSMMKER  580 (634)
Q Consensus       564 ~g~~~~A~~~~~~~~~~  580 (634)
                      .|+|++|..+.+.+.+.
T Consensus       497 l~e~~~A~~~~~~l~~~  513 (822)
T PRK14574        497 LQEWHQMELLTDDVISR  513 (822)
T ss_pred             hhhHHHHHHHHHHHHhh
Confidence            99999999998777554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=9.2e-14  Score=134.84  Aligned_cols=497  Identities=12%  Similarity=0.111  Sum_probs=392.5

Q ss_pred             CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHH
Q 047120           82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI  161 (634)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  161 (634)
                      .++..|-..+.    -.+.+.|.-++.+..+  .-|..   .-|.-++++...++.|..++....+. ++-+..+|.+-.
T Consensus       378 ~sv~LWKaAVe----lE~~~darilL~rAve--ccp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa  447 (913)
T KOG0495|consen  378 RSVRLWKAAVE----LEEPEDARILLERAVE--CCPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAA  447 (913)
T ss_pred             chHHHHHHHHh----ccChHHHHHHHHHHHH--hccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence            46666766553    4566678888888877  33433   23445667777889999999988875 566778888777


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhCCChHHHHHHHhhCccC----CCChhHHHHHHHHHH
Q 047120          162 SLYVRCGYLEFARQLFDKMGI--------RDSVSYNSMIDGYVKSGNIESARELFDSMPIR----ERNLISWNSVLNGYA  229 (634)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~p~~~~~~~ll~~~~  229 (634)
                      ..--.+|+.+...+++++-..        -+...|-.=...+-..|..-.+..+.......    ..-..||..-...|.
T Consensus       448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~  527 (913)
T KOG0495|consen  448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE  527 (913)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence            777788998888888876421        25556766667777777777777776665543    333467888888888


Q ss_pred             hcCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 047120          230 QLKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRL  303 (634)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~  303 (634)
                      +.+. ++-|..+|....+   .+...|......--..|..+.-..+|++...   .....|-.....+-..|++..|+.+
T Consensus       528 k~~~-~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i  606 (913)
T KOG0495|consen  528 KRPA-IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI  606 (913)
T ss_pred             hcch-HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence            8887 9999999988887   3455676666666678889999999988864   3445667777778888999999999


Q ss_pred             hhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047120          304 FDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS  380 (634)
Q Consensus       304 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  380 (634)
                      +...-+   .+...|-.-+..-..+..+++|..+|.+..   ...|+...|.--+...--.++.++|.+++++.++. ++
T Consensus       607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp  682 (913)
T KOG0495|consen  607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FP  682 (913)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CC
Confidence            887764   356788888999999999999999999998   56788888877777777889999999999988875 45


Q ss_pred             CchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120          381 LNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN  457 (634)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  457 (634)
                      .-...|..+.+.+-+.++++.|.+.|..-.+   ..+..|-.|...--+.|..-+|..+|++.+-.+ .-+...|...++
T Consensus       683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir  761 (913)
T KOG0495|consen  683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR  761 (913)
T ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence            5567888999999999999999999987653   356688888888889999999999999988763 225678999999


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      .-.+.|+.++|..+..++..  .++.+...|..-|.+..+.++-..+...+++..  -|+.+..++...+.....++.|.
T Consensus       762 ~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar  837 (913)
T KOG0495|consen  762 MELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAR  837 (913)
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988876  455667778888998888888888888887765  46667777788888999999999


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEE
Q 047120          538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF  600 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (634)
                      ..|+++++.+|++.++|..+-..+.+.|.-++-.+++++.....  +.-|..|..+++.+...
T Consensus       838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i~n~  898 (913)
T KOG0495|consen  838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDIKNW  898 (913)
T ss_pred             HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhHHhc
Confidence            99999999999999999999999999999999999998886653  34566788777666443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=3.3e-16  Score=145.04  Aligned_cols=440  Identities=15%  Similarity=0.131  Sum_probs=313.0

Q ss_pred             hHHHHH---HHHhccCChHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHhcCCHHHHHHHHhhCCC--C------ChhHH
Q 047120          121 SASLVL---KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN-CLISLYVRCGYLEFARQLFDKMGI--R------DSVSY  188 (634)
Q Consensus       121 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~  188 (634)
                      ||+.|.   .-|.......+|+..|+-+.+...-|+..... .+-+.+.+...+.+|++.++....  |      .....
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil  279 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL  279 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence            455544   44555667789999999988888777776543 345778888899999998875432  2      12345


Q ss_pred             HHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC----------------CCchH
Q 047120          189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE----------------RDLIS  252 (634)
Q Consensus       189 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~  252 (634)
                      +.+.-.|.+.|+++.|+..|+...+..|+..+-..++-++...++ .+...+.|.+++.                |+...
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d-~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l  358 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGD-AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL  358 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCc-HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence            666667889999999999999988888998887777777777788 8999999988864                22222


Q ss_pred             HHHHH-----HHHHhcCC--hHHHH----HHHhhCCCCChh-------------HHH--------HHHHHHHHcCChHHH
Q 047120          253 WNSML-----HGCVKCGK--MDDAQ----ALFDKMPKRDVV-------------SWA--------NMIDGYAKLGRVDIA  300 (634)
Q Consensus       253 ~~~l~-----~~~~~~g~--~~~A~----~~~~~~~~~~~~-------------~~~--------~l~~~~~~~g~~~~A  300 (634)
                      .+.-+     ..+.+..+  .++++    ++..-+..|+..             .+.        .-...|.+.|+++.|
T Consensus       359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a  438 (840)
T KOG2003|consen  359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA  438 (840)
T ss_pred             HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence            22222     22222221  22222    222222223211             011        112347889999999


Q ss_pred             HHHhhhCCCCChhhHHH----H-HHHHHH-cCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHH
Q 047120          301 RRLFDEMPKRDVVACNA----M-MGGYVR-NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL  374 (634)
Q Consensus       301 ~~~~~~~~~~~~~~~~~----l-~~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  374 (634)
                      .++++-+.+.|..+-.+    | +--|.+ ..++..|..+-+......  +-+....+.-.......|++++|...+++.
T Consensus       439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            99998887765443222    2 122233 345666766666555321  122223333333344678999999999999


Q ss_pred             HHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047120          375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT  451 (634)
Q Consensus       375 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  451 (634)
                      +...-......| .+.-.+...|++++|++.|-++.   ..+......+...|-...+...|++++.+.... +.-|+..
T Consensus       517 l~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i  594 (840)
T KOG2003|consen  517 LNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI  594 (840)
T ss_pred             HcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence            876543333333 34455778899999999998765   567778888899999999999999999887753 3445779


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-Hh
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSAC-RN  529 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~  529 (634)
                      +..|...|-+.|+-.+|.+.+-.--+  -++-+.++...|...|....-+++|+.+|++. -+.|+..-|..++..| .+
T Consensus       595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR  672 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence            99999999999999999988766543  34567889889999999999999999999998 6789999999888775 67


Q ss_pred             cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120          530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW  567 (634)
Q Consensus       530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  567 (634)
                      .|++.+|..+|+...+..|.+.+....|+.++...|..
T Consensus       673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            99999999999999999999999999999999888754

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=3.1e-13  Score=124.84  Aligned_cols=330  Identities=12%  Similarity=0.093  Sum_probs=167.7

Q ss_pred             cccccCCCCC--CChhhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccC
Q 047120            2 FVSANYNQPC--NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR   79 (634)
Q Consensus         2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~   79 (634)
                      |.|.+...+.  .+-++++. +.+.+..++..-+++.|+..|.+.+..+--.|++.-+..++-+-.---.+.|-.|.+.|
T Consensus       105 F~P~~l~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~  183 (625)
T KOG4422|consen  105 FRPRHLADPLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG  183 (625)
T ss_pred             cCchhcCCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc
Confidence            5555544442  22344444 45567889999999999999999999887777665443322111122223333443333


Q ss_pred             C-------------------CCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHH
Q 047120           80 E-------------------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ  140 (634)
Q Consensus        80 ~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  140 (634)
                      -                   +....+|..+|.++|+--..++|.++|++-.+...+.+..+||.+|.+-.-.    ....
T Consensus       184 E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~  259 (625)
T KOG4422|consen  184 EDSTSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK  259 (625)
T ss_pred             cccccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence            1                   2244556666666666666666666666666555556666666666543321    1155


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHH----hhCC----CCChhHHHHHHHHHHhCCChHH-HHHHHhhC
Q 047120          141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF----DKMG----IRDSVSYNSMIDGYVKSGNIES-ARELFDSM  211 (634)
Q Consensus       141 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m  211 (634)
                      +..+|....+.||..++|+++++.++.|+++.|.+.+    .+|+    +|...+|..+|..+.+.+++.+ |...+.++
T Consensus       260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI  339 (625)
T KOG4422|consen  260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI  339 (625)
T ss_pred             HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence            5666666666666666666666666666555444332    2222    2445555555555555554433 22222111


Q ss_pred             c----cC--CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH
Q 047120          212 P----IR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA  285 (634)
Q Consensus       212 ~----~~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  285 (634)
                      .    .+  .|-..                            .|...|...+..|.+..+.+-|.++..-....      
T Consensus       340 ~N~ltGK~fkp~~p----------------------------~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg------  385 (625)
T KOG4422|consen  340 QNSLTGKTFKPITP----------------------------TDNKFFQSAMSICSSLRDLELAYQVHGLLKTG------  385 (625)
T ss_pred             HHhhccCcccCCCC----------------------------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC------
Confidence            1    11  11000                            12233333344444444444333332211100      


Q ss_pred             HHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChH
Q 047120          286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID  365 (634)
Q Consensus       286 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~  365 (634)
                               .+++..-..+     ....-|..+....|+....+..+.+|+.|... -+-|+..+...++++....+.++
T Consensus       386 ---------~N~~~ig~~~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e  450 (625)
T KOG4422|consen  386 ---------DNWKFIGPDQ-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLE  450 (625)
T ss_pred             ---------CchhhcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHHHHHhhcCcch
Confidence                     0000000000     01112344555556666666666677766655 45666667777777776777777


Q ss_pred             HHHHHHHHHHHcCCCCchhH
Q 047120          366 KGVAIHRYLEKDQFSLNGKH  385 (634)
Q Consensus       366 ~a~~~~~~~~~~~~~~~~~~  385 (634)
                      -..+++.+++..|...+...
T Consensus       451 ~ipRiw~D~~~~ght~r~~l  470 (625)
T KOG4422|consen  451 VIPRIWKDSKEYGHTFRSDL  470 (625)
T ss_pred             hHHHHHHHHHHhhhhhhHHH
Confidence            77777776666654444333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.71  E-value=7e-12  Score=122.07  Aligned_cols=504  Identities=11%  Similarity=0.011  Sum_probs=392.7

Q ss_pred             HHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHH
Q 047120           32 QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML  111 (634)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  111 (634)
                      +|+....+ .++-++-.|...+..    ..+   +.|+.++.+..+.= +.+..    |.-+|++-.-++.|..++++.+
T Consensus       367 RVlRKALe-~iP~sv~LWKaAVel----E~~---~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaR  433 (913)
T KOG0495|consen  367 RVLRKALE-HIPRSVRLWKAAVEL----EEP---EDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAR  433 (913)
T ss_pred             HHHHHHHH-hCCchHHHHHHHHhc----cCh---HHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            55555544 235566666555443    344   67888888776432 22334    4455667778999999999998


Q ss_pred             HCCCCCCcchHHHHHHHHhccCChHHHHHHHHHH----HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 047120          112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL----RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-----  182 (634)
Q Consensus       112 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----  182 (634)
                      + .++-+...|.+....--+.|+.+....+..+-    ...|+..+..-|-.=...+-+.|..-.+..+......     
T Consensus       434 e-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe  512 (913)
T KOG0495|consen  434 E-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE  512 (913)
T ss_pred             h-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence            8 46677778877777777889998888877654    4667888888887777788888888777777665532     


Q ss_pred             -CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh-hHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHH
Q 047120          183 -RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL-ISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSML  257 (634)
Q Consensus       183 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~  257 (634)
                       .-..+|+.-...|.+.+.++-|..+|....+..|.. ..|......--..|. .+....+|++...  | ....|....
T Consensus       513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt-~Esl~Allqkav~~~pkae~lwlM~a  591 (913)
T KOG0495|consen  513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT-RESLEALLQKAVEQCPKAEILWLMYA  591 (913)
T ss_pred             chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCcchhHHHHHH
Confidence             234589999999999999999999999998885654 445444444444455 8999999998876  3 445666777


Q ss_pred             HHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHH
Q 047120          258 HGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKAL  332 (634)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  332 (634)
                      +.+-..|+...|..++....+   .+...|-+-+........++.|..+|.+...  ++...|..-+..---.+..++|+
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~  671 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEAL  671 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHH
Confidence            788889999999999998865   3567888889999999999999999998764  67778877777777789999999


Q ss_pred             HHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc-
Q 047120          333 EIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-  410 (634)
Q Consensus       333 ~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-  410 (634)
                      +++++..+.   -|+- ..|..+.+.+.+.++++.|...|..-.+. .+..+..|-.|...--+.|.+-.|..++++.. 
T Consensus       672 rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  672 RLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            999999854   5665 57777888888999999999888765543 45567889999999999999999999999876 


Q ss_pred             --CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH
Q 047120          411 --DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY  488 (634)
Q Consensus       411 --~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  488 (634)
                        ..+...|-..|..-.+.|..+.|..+..+..+. +.-+...|.--|...-+.++-......+++.      ..|+.+.
T Consensus       748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVl  820 (913)
T KOG0495|consen  748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVL  820 (913)
T ss_pred             cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhH
Confidence              346778999999999999999999999998876 3444568888888877777766665555544      4577788


Q ss_pred             HHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          489 GCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       489 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ..+...+....++++|.+-|.+. ...|| ..+|..+...+..+|.-+.-.+++.+...-+|.....|..+..--
T Consensus       821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i  895 (913)
T KOG0495|consen  821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI  895 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence            88999999999999999999987 66666 678888999999999999999999999999999888888776543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.68  E-value=2.6e-12  Score=130.02  Aligned_cols=538  Identities=13%  Similarity=0.068  Sum_probs=362.9

Q ss_pred             HHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcC
Q 047120           18 LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG   97 (634)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~   97 (634)
                      +..+-+.|++..+..|....++.. +-...+|..|-..|-..|+.   +++...+-..-..+++ |..-|-.+.....+.
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~---eK~l~~~llAAHL~p~-d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDI---EKALNFWLLAAHLNPK-DYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccH---HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence            334556699999999999999876 55778899999999999998   9998888766555543 668899999999999


Q ss_pred             CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHH----HHHHHHHHhcCCHHHH
Q 047120           98 LDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ----NCLISLYVRCGYLEFA  173 (634)
Q Consensus        98 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~~~~A  173 (634)
                      |+++.|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++.....+.|..-.    ..++..+...++-+.|
T Consensus       221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999854 334444455567788999999999999999987543232222    2345566677777899


Q ss_pred             HHHHhhCCC-----CChhHHHHHHHHHHhCCChHHHHHHHhhCccC------------------------CCChhHHH--
Q 047120          174 RQLFDKMGI-----RDSVSYNSMIDGYVKSGNIESARELFDSMPIR------------------------ERNLISWN--  222 (634)
Q Consensus       174 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------~p~~~~~~--  222 (634)
                      .+.++....     -+...++.++..|.+...++.|......+...                        .|+...|.  
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            998887654     24567889999999999999999888777651                        11111111  


Q ss_pred             --HHHHHHHhcCCcHHHHHHHHhhCCC------CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHH
Q 047120          223 --SVLNGYAQLKSGLQFAWQIFEKMPE------RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDG  290 (634)
Q Consensus       223 --~ll~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~  290 (634)
                        .+.-++.+... .+....+......      .++..|..+..++...|++.+|+.+|..+..    .+...|-.+..+
T Consensus       380 v~rl~icL~~L~~-~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  380 VIRLMICLVHLKE-RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hHhHhhhhhcccc-cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence              12223333333 3333333333222      3556788889999999999999999999875    457789999999


Q ss_pred             HHHcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC-------CCCCCHhHHHHHHHHHHc
Q 047120          291 YAKLGRVDIARRLFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL-------YLHPDDASLVIVLSAIAQ  360 (634)
Q Consensus       291 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~  360 (634)
                      |...|..++|...|+.+..-   +...--.|...+.+.|+.++|++.+..+....       +..|+..........+..
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~  538 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ  538 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence            99999999999999988753   33455566678889999999999999865221       234444455555666778


Q ss_pred             cCChHHHHHHHHHHHHcC----------------------CCCchhHHHHHHHHhHhcCCHHHHHHHHHhc--------c
Q 047120          361 LGHIDKGVAIHRYLEKDQ----------------------FSLNGKHGVALIDMYSKCGSIENAIKVFEQI--------E  410 (634)
Q Consensus       361 ~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~  410 (634)
                      .|+.++-..+-..|+...                      ..........++.+-.+.++.....+-...-        .
T Consensus       539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~  618 (895)
T KOG2076|consen  539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR  618 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence            888887666555544321                      0111122222333333333322222111110        0


Q ss_pred             CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc
Q 047120          411 DGSV----DHWNAMINGLAIHGLGELAFDLLMEMERLSIE--PDD---ITFTGLLNACAHAGLVKEGLLCFELMRRIHKL  481 (634)
Q Consensus       411 ~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  481 (634)
                      .-+.    ..+.-++.++++.+++++|+.+...+......  ++.   ..-...+.++...+++..|...++.+....+.
T Consensus       619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~  698 (895)
T KOG2076|consen  619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF  698 (895)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence            1111    23456778899999999999999988875422  222   12344566778899999999999999875333


Q ss_pred             ccC---hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120          482 EPE---LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND--VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       482 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                      ..+   ...|+.......+.|+-.-=.+++..+ ...|+.  .............+.+.-|...+-++...+|++|-.-.
T Consensus       699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl  778 (895)
T KOG2076|consen  699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL  778 (895)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence            322   344665666666666655545555444 223333  22222223356678999999999999999999999877


Q ss_pred             HHHHHHh
Q 047120          556 LLSNMFA  562 (634)
Q Consensus       556 ~l~~~~~  562 (634)
                      .++.++.
T Consensus       779 ~lglafi  785 (895)
T KOG2076|consen  779 CLGLAFI  785 (895)
T ss_pred             HHHHHHH
Confidence            7777665

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=4.8e-13  Score=124.35  Aligned_cols=467  Identities=14%  Similarity=0.134  Sum_probs=297.4

Q ss_pred             HHhccCchHH----------HH-HHHHHHHhCCCCch------hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCC
Q 047120           21 LRKCKTLNDV----------NQ-IHARMITTGFIKNT------HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD   83 (634)
Q Consensus        21 ~~~~~~~~~~----------~~-~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   83 (634)
                      -+.|+++..+          ++ ++++-.+.|.+...      .+...|.+-|....-.   .+|+..++-+.+...-||
T Consensus       159 an~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~---~ealntyeiivknkmf~n  235 (840)
T KOG2003|consen  159 ANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMT---AEALNTYEIIVKNKMFPN  235 (840)
T ss_pred             HhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHH---HHHhhhhhhhhcccccCC
Confidence            3678888765          13 33333344543322      2334444455444444   888888888877777777


Q ss_pred             cccHH-HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchH----HHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHH
Q 047120           84 PFLWN-AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA----SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN  158 (634)
Q Consensus        84 ~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  158 (634)
                      ....- .+...|.+.+++.+|+..|+..+..-...+..+-    +.+-..+.+.|.++.|..-|+...+.  .|+-.+--
T Consensus       236 ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~  313 (840)
T KOG2003|consen  236 AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAAL  313 (840)
T ss_pred             CceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhh
Confidence            65442 3556777888999999999877763222222332    33333467889999999999988774  57777666


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC----------------CChhHH-----HHHHHHHHhCCCh--HHHHHHHhhCccC-
Q 047120          159 CLISLYVRCGYLEFARQLFDKMGI----------------RDSVSY-----NSMIDGYVKSGNI--ESARELFDSMPIR-  214 (634)
Q Consensus       159 ~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~-----~~li~~~~~~g~~--~~A~~~~~~m~~~-  214 (634)
                      .|+-++..-|+-++..+.|.+|..                |+....     +-.++.+-+.+..  ++++-.--++... 
T Consensus       314 nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv  393 (840)
T KOG2003|consen  314 NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV  393 (840)
T ss_pred             hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc
Confidence            667777778999999999888732                122222     2222333222221  1221111111110 


Q ss_pred             -CCChhH---H------------------HHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHH-----HHh-cCCh
Q 047120          215 -ERNLIS---W------------------NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG-----CVK-CGKM  266 (634)
Q Consensus       215 -~p~~~~---~------------------~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-----~~~-~g~~  266 (634)
                       .|+-..   |                  ..-...+.+.++ ++.|.++++-+...|..+-.....-     |.+ -.++
T Consensus       394 i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d-~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~  472 (840)
T KOG2003|consen  394 IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD-IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDF  472 (840)
T ss_pred             cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC-HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccch
Confidence             122110   0                  011223456777 8999888888777555443332221     222 3456


Q ss_pred             HHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH---HHHHHcCCchHHHHHHHHHHh
Q 047120          267 DDAQALFDKMPKRD---VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM---GGYVRNGYSMKALEIFDNMQC  340 (634)
Q Consensus       267 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~  340 (634)
                      .+|.+.-+.....|   ......-.+.-...|++++|.+.+++....|...-.+|.   -.+-..|+.++|++.|-++..
T Consensus       473 ~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~  552 (840)
T KOG2003|consen  473 ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA  552 (840)
T ss_pred             hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence            67777666655422   222222233445568889999888888877665444333   346677888999988887762


Q ss_pred             cCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHH
Q 047120          341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHW  417 (634)
Q Consensus       341 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~  417 (634)
                      -  +.-+......+...|....+...|++++.+.... ++.|+.+.+.|.+.|-+.|+-..|.+.+-.--   ..+..+.
T Consensus       553 i--l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i  629 (840)
T KOG2003|consen  553 I--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI  629 (840)
T ss_pred             H--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence            2  2345566677777888888888888887766543 56678888889999999998888887754332   4466676


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG  496 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  496 (634)
                      .-|..-|....-+++++.+|++..-  ++|+..-|-.++..|. +.|++..|..+|+...+  .++.|.....-|++.+.
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~  705 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhc
Confidence            7777778888888899999988764  6888888887777654 57899999999988876  45677888888888877


Q ss_pred             ccCC
Q 047120          497 RAGH  500 (634)
Q Consensus       497 ~~g~  500 (634)
                      ..|.
T Consensus       706 dlgl  709 (840)
T KOG2003|consen  706 DLGL  709 (840)
T ss_pred             cccc
Confidence            7774

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.65  E-value=1e-11  Score=125.80  Aligned_cols=517  Identities=15%  Similarity=0.100  Sum_probs=341.3

Q ss_pred             hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 047120           56 FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI  135 (634)
Q Consensus        56 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  135 (634)
                      ....|+.   ++|..++.+..+..+ .+...|..|...|-..|+.++++..+-..-. -.+-|...|..+.....++|++
T Consensus       149 lfarg~~---eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  149 LFARGDL---EEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHhCCH---HHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccH
Confidence            3445988   999999999987764 4788999999999999999999887754433 2233556788888888899999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C--Chh----HHHHHHHHHHhCCChHHHHHH
Q 047120          136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--R--DSV----SYNSMIDGYVKSGNIESAREL  207 (634)
Q Consensus       136 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~----~~~~li~~~~~~g~~~~A~~~  207 (634)
                      ++|.-+|.++++..+ ++....-.-...|-+.|+...|..-|.++-.  |  |..    .--.+++.+...++-+.|++.
T Consensus       224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999998753 3444555567788899999999988888754  2  111    233446677778888999998


Q ss_pred             HhhCccC---CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--------------------------CCchHHHH---
Q 047120          208 FDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--------------------------RDLISWNS---  255 (634)
Q Consensus       208 ~~~m~~~---~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~---  255 (634)
                      +......   .-+...++.++..+.+... .+.+.........                          ++..+|..   
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q-~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQ-SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHH-HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            8877663   3334455566666555444 5555444433221                          11111211   


Q ss_pred             -HHHHH--HhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHH
Q 047120          256 -MLHGC--VKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVR  324 (634)
Q Consensus       256 -l~~~~--~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~  324 (634)
                       ++-++  .+.++..+++.-+-.-.    ..+...|.-+..+|...|++.+|+++|..+..    .+...|-.+..+|..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence             11122  23334444433332221    13456788889999999999999999999875    356789999999999


Q ss_pred             cCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHh
Q 047120          325 NGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYLE--------KDQFSLNGKHGVALIDMYSK  395 (634)
Q Consensus       325 ~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~  395 (634)
                      .|.+++|++.|+....   ..|+. ..-..|-..+.+.|+.++|.+.+..+.        ..+..|+........+.+..
T Consensus       462 l~e~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~  538 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ  538 (895)
T ss_pred             HhhHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence            9999999999999984   46654 344556666788999999999988844        33456666666677788888


Q ss_pred             cCCHHHHHHHHHhccCC--------------------------ChhHHHHHHHHHHHcCChHHHHHH------HHHHHHC
Q 047120          396 CGSIENAIKVFEQIEDG--------------------------SVDHWNAMINGLAIHGLGELAFDL------LMEMERL  443 (634)
Q Consensus       396 ~~~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~A~~~------~~~m~~~  443 (634)
                      .|+.++-..+-..+..+                          ........+.+-.+.++.....+-      +..-...
T Consensus       539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~  618 (895)
T KOG2076|consen  539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR  618 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence            88888755544433211                          111122222333333332211111      1111222


Q ss_pred             CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh----HHHHHHHHHhccCCHHHHHHHHHhC-C----
Q 047120          444 SIEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ----HYGCMVDILGRAGHIEAARNLIEDM-P----  512 (634)
Q Consensus       444 g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-~----  512 (634)
                      |+.-+.  ..+.-++.++++.+++++|..+...+....-+..+..    .-...+.+....+++..|...++.+ .    
T Consensus       619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~  698 (895)
T KOG2076|consen  619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF  698 (895)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence            333332  2456677788899999999999888877433333333    2344556677889999999999887 1    


Q ss_pred             -CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          513 -MEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       513 -~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                       ..|. ...|+...+...+.|+-.--.+.+..+....|.+ +..+...+..+...+.+..|...+-++-....
T Consensus       699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p  771 (895)
T KOG2076|consen  699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP  771 (895)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence             1333 3356656666666666655566666666666666 66777778888899999999998877755543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.3e-11  Score=115.66  Aligned_cols=489  Identities=12%  Similarity=0.064  Sum_probs=347.8

Q ss_pred             CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHH
Q 047120           82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI  161 (634)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  161 (634)
                      .+...|-.-...-...+++..|.++|++.+... .-+...|..-+..-.+...+..|..+++++...-+..|. .|-..+
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~  148 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI  148 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence            455666666666667788889999999988733 234445666667777888899999999998876444333 444555


Q ss_pred             HHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHH
Q 047120          162 SLYVRCGYLEFARQLFDKMG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW  239 (634)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~  239 (634)
                      .+--..|++..|.++|++..  +|+...|++.|+--.+-+.++.|..+|++..-..|++.+|.....--.+.|. +..+.
T Consensus       149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~-~~~aR  227 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN-VALAR  227 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc-HHHHH
Confidence            55667799999999998865  5889999999999999999999999999988878999988888877778888 99999


Q ss_pred             HHHhhCCC--C----CchHHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHHcCChHHHHHHh----
Q 047120          240 QIFEKMPE--R----DLISWNSMLHGCVKCGKMDDAQALFDKMPK--R---DVVSWANMIDGYAKLGRVDIARRLF----  304 (634)
Q Consensus       240 ~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~----  304 (634)
                      .+++...+  .    +...+.++..--.++..++.|.-+|.-.++  |   ....|..+...--+-|+........    
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            99988776  2    234455555555677788888888776653  2   2344555555545556654443332    


Q ss_pred             ----hhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-------hHHHHHHHHH---HccCChHHH
Q 047120          305 ----DEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-------ASLVIVLSAI---AQLGHIDKG  367 (634)
Q Consensus       305 ----~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a  367 (634)
                          +.+.+.   |-.+|--.++.-...|+.+...++|++....  ++|-.       ..|..+=-+|   ....+.+.+
T Consensus       308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert  385 (677)
T KOG1915|consen  308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERT  385 (677)
T ss_pred             hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                222222   5567888888888889999999999999854  66632       1232222222   457899999


Q ss_pred             HHHHHHHHHcCCCCchhHHHH----HHHHhHhcCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120          368 VAIHRYLEKDQFSLNGKHGVA----LIDMYSKCGSIENAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEME  441 (634)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~  441 (634)
                      .++++..++. ++....++.-    ......++.++..|.+++....  -|...++...|..-.+.++++.+..++++.+
T Consensus       386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999883 4545455544    3445568899999999998876  4667788888999999999999999999999


Q ss_pred             HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHH
Q 047120          442 RLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVI  519 (634)
Q Consensus       442 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~  519 (634)
                      +-  .| +..+|......-...|+.+.|..+|+.+.....+......|.+.|+.=...|.+++|..+++++ ...+...+
T Consensus       465 e~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv  542 (677)
T KOG1915|consen  465 EF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV  542 (677)
T ss_pred             hc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence            86  44 4678888888888899999999999999873222233445777777778999999999999987 44556667


Q ss_pred             HHHHHHHHH-----hcC-----------ChhHHHHHHHHHhccCCCC--Cc----hHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          520 WRTLLSACR-----NYE-----------NLNVGEPVAKHLIGMDSSN--SS----SYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       520 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~~p~~--~~----~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      |-+....-.     +.|           .+..|..+|+++.....+.  -.    .+-.+-++-...|.-.+...+-++|
T Consensus       543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m  622 (677)
T KOG1915|consen  543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM  622 (677)
T ss_pred             HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence            777665433     334           5678888888886543211  11    2223333334456555555555555


Q ss_pred             H
Q 047120          578 K  578 (634)
Q Consensus       578 ~  578 (634)
                      .
T Consensus       623 P  623 (677)
T KOG1915|consen  623 P  623 (677)
T ss_pred             c
Confidence            3

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=1.8e-11  Score=113.46  Aligned_cols=427  Identities=12%  Similarity=0.100  Sum_probs=220.5

Q ss_pred             cccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh--ccCChHHH-HHHHHHHHHhcCCCChhHHHHH
Q 047120           84 PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS--RLGLIEEG-LQIHGLLRKVAFGSDLFLQNCL  160 (634)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l  160 (634)
                      +.+=|.|+... .+|...++.-+|+.|+..|+..+...-..+++..+  ...++--+ .+.|-.|.+.|-. +..+|   
T Consensus       116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---  190 (625)
T ss_pred             hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence            34556665544 56788889999999999888777776666665433  22222211 2334444444422 22233   


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHHHH
Q 047120          161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFA  238 (634)
Q Consensus       161 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~~a  238 (634)
                           +.|++.+  -+|+ ...+...+|..||.++++--..+.|.++|++....  ..+..+||.+|.+-+-..+ -+..
T Consensus       191 -----K~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv  261 (625)
T KOG4422|consen  191 -----KSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLV  261 (625)
T ss_pred             -----ccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHH
Confidence                 2344433  3343 33445668888888888888888888888877655  4556667776665544332 2222


Q ss_pred             HHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHH----HHhhhCC----CC
Q 047120          239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR----RLFDEMP----KR  310 (634)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~----~~  310 (634)
                      .++...-.                               .||..|+|+++.+..+.|+++.|.    +++.+|+    +|
T Consensus       262 ~EMisqkm-------------------------------~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP  310 (625)
T KOG4422|consen  262 AEMISQKM-------------------------------TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP  310 (625)
T ss_pred             HHHHHhhc-------------------------------CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc
Confidence            22222212                               355555555555555555555443    2233332    35


Q ss_pred             ChhhHHHHHHHHHHcCCch-HHHHHHHHHHhcC---CC---CC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcC----
Q 047120          311 DVVACNAMMGGYVRNGYSM-KALEIFDNMQCEL---YL---HP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ----  378 (634)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~~---~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----  378 (634)
                      ...+|..+|..+++.++.. .|..++.++...-   .+   .| |..-|...+..|.+..+.+.|.++..-+....    
T Consensus       311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~  390 (625)
T KOG4422|consen  311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF  390 (625)
T ss_pred             chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence            5566666666666655543 2344444433210   11   22 23445555666666666666665554443211    


Q ss_pred             CCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047120          379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA  458 (634)
Q Consensus       379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  458 (634)
                      +.|+..                            ...-|..+....++....+.-+..|+.|.-.-.-|+..+...++++
T Consensus       391 ig~~~~----------------------------~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA  442 (625)
T KOG4422|consen  391 IGPDQH----------------------------RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA  442 (625)
T ss_pred             cChHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence            111110                            0112233334444444455555555555544444555555555555


Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC--------------------CHHHHHH-HHHhC-CCCCC
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG--------------------HIEAARN-LIEDM-PMEPN  516 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~-~~~~~-~~~p~  516 (634)
                      ..-.+.++-.-++|..+.. +|..........+...+++..                    ++.++.+ .-.++ ..+-.
T Consensus       443 ~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~  521 (625)
T KOG4422|consen  443 LDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP  521 (625)
T ss_pred             HhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence            5555555555555555444 332222222222222222222                    0111110 01111 23344


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CCCCc--hHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMD---SSNSS--SYVLLSNMFAGLGMWNDARRVRSMMKERNLKK  584 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  584 (634)
                      ....+..+-.+.+.|..++|.+++....+..   |..|.  +...+.+.-........|..+++-|...+..+
T Consensus       522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~  594 (625)
T KOG4422|consen  522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI  594 (625)
T ss_pred             hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence            5566666667888999999999988875543   33332  23345555566777888899988887776654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.8e-13  Score=126.46  Aligned_cols=214  Identities=16%  Similarity=0.143  Sum_probs=174.1

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHH
Q 047120          360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDL  436 (634)
Q Consensus       360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~  436 (634)
                      -.|+.-.+..-++..++....+ ...|--+..+|...++.++....|++..   +.++.+|..=...+.-.+++++|..=
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            4577888888888888765333 3336667778999999999999998876   44777888888888889999999999


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC
Q 047120          437 LMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME  514 (634)
Q Consensus       437 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  514 (634)
                      |++.+..  .|+ ...|.-+.-+..+.++++++...|++.+++  ++.-+++|+.....+..++++++|.+.|+.. .+.
T Consensus       417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            9999874  665 457777777778899999999999999874  4555788999999999999999999999987 444


Q ss_pred             CC---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          515 PN---------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       515 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      |.         +.+-.+++..-.+ +++..|+.+++++++++|....+|..|+.+..+.|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44         2333334433333 8999999999999999999999999999999999999999999998743

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.63  E-value=1.3e-15  Score=145.53  Aligned_cols=257  Identities=17%  Similarity=0.195  Sum_probs=113.4

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL-VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK  395 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  395 (634)
                      .+...+.+.|++++|+++++..... ...|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence            3456677788888888888654433 113444433 33444556677888888888888776532 55666677776 68


Q ss_pred             cCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047120          396 CGSIENAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       396 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      .+++++|.+++....  .+++..+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.++|++.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888999988887664  3466678888889999999999999999987643 2345678888889999999999999999


Q ss_pred             HHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          473 ELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       473 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +++.+.   .| |......++..+...|+.+++.++++..  ..+.|+..+..+..++...|+.++|...++++.+.+|.
T Consensus       170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            999874   45 4777889999999999999988888776  22456667889999999999999999999999999999


Q ss_pred             CCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       550 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ||.....+++++...|+.++|.++.+++..
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999887643

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.62  E-value=5.3e-10  Score=109.12  Aligned_cols=544  Identities=15%  Similarity=0.151  Sum_probs=312.0

Q ss_pred             CChhhHHHHHHhccCchHHHHHHHHHHHh------CCCCchhhhhHHHHHh---------------------hcCCCCCC
Q 047120           12 NSTQSTLLLLRKCKTLNDVNQIHARMITT------GFIKNTHLTTKLVASF---------------------SSSPCTPL   64 (634)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~li~~~---------------------~~~~~~~~   64 (634)
                      +.....+..-++|..+.-..+||...++.      +..|+..+|-.+=+.+                     .+.|++  
T Consensus        41 p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~i--  118 (835)
T KOG2047|consen   41 PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLI--  118 (835)
T ss_pred             ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchH--
Confidence            44555566668888888777888777643      5566666665554444                     222333  


Q ss_pred             HHHHHHHHHhccc-cCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 047120           65 TEFARYIFFKYHA-FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG  143 (634)
Q Consensus        65 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  143 (634)
                       ..-+..|++... ..+..-...|...+......+-++-++.+|++.++  +.|..  -.--+..++..++.++|.+.+.
T Consensus       119 -T~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie~L~~~d~~~eaa~~la  193 (835)
T KOG2047|consen  119 -TRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIEYLAKSDRLDEAAQRLA  193 (835)
T ss_pred             -HHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccchHHHHHHHH
Confidence             333344443221 11111223344444444444555555555555444  22222  3334444455555555555554


Q ss_pred             HHHHhc------CCCChhHHHHHHHHHHhcCCH---HHHHHHHhhCCC--CC--hhHHHHHHHHHHhCCChHHHHHHHhh
Q 047120          144 LLRKVA------FGSDLFLQNCLISLYVRCGYL---EFARQLFDKMGI--RD--SVSYNSMIDGYVKSGNIESARELFDS  210 (634)
Q Consensus       144 ~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~  210 (634)
                      ..+...      .+.+-..|.-+-...++.-+.   -....+++.+..  +|  ...|++|.+-|++.|.+++|.++|++
T Consensus       194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee  273 (835)
T KOG2047|consen  194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE  273 (835)
T ss_pred             HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            443211      122223333333333322211   112222222221  12  23689999999999999999999998


Q ss_pred             CccCCCChhHHHHHHHHHHhcCC---------------------cHHHHHHHHhhCCCC---------------CchHHH
Q 047120          211 MPIRERNLISWNSVLNGYAQLKS---------------------GLQFAWQIFEKMPER---------------DLISWN  254 (634)
Q Consensus       211 m~~~~p~~~~~~~ll~~~~~~~~---------------------~~~~a~~~~~~~~~~---------------~~~~~~  254 (634)
                      ....-.....|+.+.+.|+....                     +++....-|+.+...               ++..|.
T Consensus       274 ai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~  353 (835)
T KOG2047|consen  274 AIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH  353 (835)
T ss_pred             HHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence            87765555566666666654211                     122222333332220               111121


Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC---C------ChhHHHHHHHHHHHcCChHHHHHHhhhCCCCCh-------hhHHHH
Q 047120          255 SMLHGCVKCGKMDDAQALFDKMPK---R------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV-------VACNAM  318 (634)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l  318 (634)
                      .-+  -+..|+..+-...|.+..+   |      -...|..+.+.|-..|+++.|..+|++..+.+-       .+|..-
T Consensus       354 kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w  431 (835)
T KOG2047|consen  354 KRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW  431 (835)
T ss_pred             hhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence            111  1234555555555655542   1      234678899999999999999999999887332       345555


Q ss_pred             HHHHHHcCCchHHHHHHHHHHhcC----------CCCC------CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 047120          319 MGGYVRNGYSMKALEIFDNMQCEL----------YLHP------DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN  382 (634)
Q Consensus       319 ~~~~~~~g~~~~A~~~~~~m~~~~----------~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  382 (634)
                      ...=.+..+++.|+++++....-.          +.++      +...|...+..-...|-++....+++.+++..+. +
T Consensus       432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-T  510 (835)
T KOG2047|consen  432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-T  510 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-C
Confidence            555566788899999888775321          0111      1123445555556678888889999999887653 4


Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhccC----CCh-hHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIED----GSV-DHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTG  454 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~  454 (634)
                      +.+.-.....+-...-++++.++|++-..    |++ ..|+..+.-+.+.   ...+.|..+|++..+ |++|...-+..
T Consensus       511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy  589 (835)
T KOG2047|consen  511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY  589 (835)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            44444445556667778999999998652    333 3688777666542   358999999999998 67777553333


Q ss_pred             HH--HHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHH---HH
Q 047120          455 LL--NACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLL---SA  526 (634)
Q Consensus       455 ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~  526 (634)
                      |+  ..-.+-|-...|..+++++..  ++++.  ..+|+..|.--...=-......+++++ ..-||...-...+   ..
T Consensus       590 LlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl  667 (835)
T KOG2047|consen  590 LLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL  667 (835)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            33  333456888899999999876  44443  455777765433222223333444443 2235544333222   33


Q ss_pred             HHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHHHhcCCCch
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSS--NSSSYVLLSNMFAGLGMWN  568 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~  568 (634)
                      -.+.|..+.|..+|.-.-+.-++  ++..|...-..-.+-|+-+
T Consensus       668 EtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  668 ETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             hhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence            46789999999999888877643  4557777777777888743

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=4.5e-11  Score=112.07  Aligned_cols=327  Identities=11%  Similarity=0.059  Sum_probs=239.0

Q ss_pred             CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH-HHHHHHHHcC
Q 047120          248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN-AMMGGYVRNG  326 (634)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~g  326 (634)
                      .|...+-.....+-+.|....|+..|......-+..|.+.+....-..+.+.+..+...+...+...-. -+..++....
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~  241 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH  241 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence            444444444445567788888888887776655566666665555555556555555444443332222 2334555556


Q ss_pred             CchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-C-CchhHHHHHHHHhHhcCCHHHHHH
Q 047120          327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-S-LNGKHGVALIDMYSKCGSIENAIK  404 (634)
Q Consensus       327 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~  404 (634)
                      +.++++.-....... |+.-+...-+....+.....|+++|+.+|+++.+... . .|..+|+.++..-..+.++.---.
T Consensus       242 q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~  320 (559)
T KOG1155|consen  242 QHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ  320 (559)
T ss_pred             HHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence            777787777777755 5544444444444455677899999999999988731 1 255677766644433333332222


Q ss_pred             HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc
Q 047120          405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP  483 (634)
Q Consensus       405 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  483 (634)
                      ..-.+.+--+.+.-.+.+-|.-.++.++|..+|++..+.  .|. ...|+.+.+-|....+...|+..++.+.+.  .+.
T Consensus       321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~  396 (559)
T KOG1155|consen  321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR  396 (559)
T ss_pred             HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch
Confidence            222333445566777778888899999999999999975  566 458888889999999999999999999873  255


Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      |-..|-.|+.+|.-.+.+.-|+-+|+++ ..+| |...|.+|...|.+.++.++|++.|.+++..+..+...+..|+++|
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy  476 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY  476 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            7788999999999999999999999998 4555 5789999999999999999999999999999988999999999999


Q ss_pred             hcCCCchHHHHHHHHHHh
Q 047120          562 AGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       562 ~~~g~~~~A~~~~~~~~~  579 (634)
                      .+.++.++|.+++++-.+
T Consensus       477 e~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  477 EELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            999999999999988865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.2e-11  Score=112.36  Aligned_cols=220  Identities=13%  Similarity=0.033  Sum_probs=173.9

Q ss_pred             HHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047120          321 GYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI  399 (634)
Q Consensus       321 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  399 (634)
                      -+.-.|+.-.|...|+..+..   .|.... |.-+...+....+.++....|..+.+.. +-++.+|..-..++.-.+++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~  410 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY  410 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence            345578999999999999844   454433 7778888999999999999999998875 55777888888889999999


Q ss_pred             HHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120          400 ENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELM  475 (634)
Q Consensus       400 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~  475 (634)
                      ++|..-|++...-   +...|-.+..+.-+.+++++++..|++.+++  -|+ +..|+.....+...+++++|.+.|+.+
T Consensus       411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            9999999998754   4446666666777889999999999999986  455 679999999999999999999999999


Q ss_pred             HHhcCc------ccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          476 RRIHKL------EPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       476 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      .+....      .+.+.+.-.++-.- =.+++..|.++++++ .+.|- ...|.+|...-.+.|+.++|+++|++...+.
T Consensus       489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            874211      11111222222222 348999999999998 66665 5689999999999999999999999987654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=4.4e-11  Score=115.04  Aligned_cols=264  Identities=12%  Similarity=0.019  Sum_probs=190.5

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120          311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI  390 (634)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  390 (634)
                      ++.....-..-+...+++.+..++++...+..+  +....+..-|.++...|+.-+-..+=..+.+. .|..+.+|-++.
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg  319 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG  319 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence            444445555667777888888888888876533  33334444455667777777666666666654 355667788888


Q ss_pred             HHhHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047120          391 DMYSKCGSIENAIKVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE  467 (634)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  467 (634)
                      -.|.-.|+.++|++.|.+...-|   ...|-....+|+-.|..+.|+..+...-+. +.-....+..+..-|.+.++.+-
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence            77877888888888888876433   347888888888888888888888877653 12222344455556778888888


Q ss_pred             HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC-----CCC----CHHHHHHHHHHHHhcCChhHHHH
Q 047120          468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-----MEP----NDVIWRTLLSACRNYENLNVGEP  538 (634)
Q Consensus       468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~g~~~~a~~  538 (634)
                      |.++|..+...  .+.|+...+-+.-.....+.+.+|...|+..-     +.+    =..+++.|+.+|++.+.+++|+.
T Consensus       399 Ae~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  399 AEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            88888887652  23345667777777778888888888887651     111    23467888888888889999999


Q ss_pred             HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .+++++.+.|.++.++..++-+|...|+++.|++.|.+....
T Consensus       477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            999999888999899999999999999999888888777543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=6.2e-13  Score=130.26  Aligned_cols=280  Identities=14%  Similarity=0.048  Sum_probs=220.0

Q ss_pred             CChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHH
Q 047120          295 GRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAI  370 (634)
Q Consensus       295 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~  370 (634)
                      -+..+|...|..+++  + ...+...+..+|...+++++|.++|+.+.+...... +...|.+.+-.+.+    +-+..+
T Consensus       333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            356789999988664  2 335566788999999999999999999985422222 44577777665433    223333


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047120          371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV---DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP  447 (634)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  447 (634)
                      +.+-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+-|+   .+|+.+..-+....++|.|+..|+..+.  +.|
T Consensus       409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence            33222222366789999999999999999999999999885544   5788888888889999999999999874  455


Q ss_pred             CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 047120          448 DDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTL  523 (634)
Q Consensus       448 ~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  523 (634)
                      ... .|..+...|.+.++++.|+-.|+++..   +.|. ......+...+-+.|+.|+|+.+++++ .++| |+..-...
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            544 777888899999999999999999976   3454 556677888899999999999999998 3333 45555556


Q ss_pred             HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      +..+...+++++|...++++.+.-|++...+..++.+|.+.|+.+.|+.-|.-|.+.+.+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            667888899999999999999999999999999999999999999999988877666543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.55  E-value=7.4e-12  Score=125.14  Aligned_cols=245  Identities=8%  Similarity=0.009  Sum_probs=124.3

Q ss_pred             HHcCCchHHHHHHHHHHhcCCCCCCHhHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047120          323 VRNGYSMKALEIFDNMQCELYLHPDDASLV--IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE  400 (634)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  400 (634)
                      .+.|+++.|.+.+.++.+   ..|+.....  .....+...|+++.|...++.+.+.. +-++.....+...|.+.|+++
T Consensus       129 ~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        129 QQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence            445555555555555542   234432222  12334445555555555555555443 334455555555555555555


Q ss_pred             HHHHHHHhccCC---Chh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047120          401 NAIKVFEQIEDG---SVD--------HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL  469 (634)
Q Consensus       401 ~A~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  469 (634)
                      +|.+++..+.+.   +..        .|..++.......+.+...++++.+-+. .+.++.....+..++...|+.++|.
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            555555554421   111        1222222222333344444444444322 1234455566666666666666666


Q ss_pred             HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      ++++...+.   .|+...  .++.+....++.+++++.+++. +..|+ +..+.++...|.+.|++++|.+.|+++++..
T Consensus       284 ~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~  358 (398)
T PRK10747        284 QIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR  358 (398)
T ss_pred             HHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            666665541   333322  1223333446666666666655 32333 3445566666666666666666666666666


Q ss_pred             CCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       548 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      |++ ..+..++.++.+.|+.++|.+++++..
T Consensus       359 P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        359 PDA-YDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            554 334566666666666666666666553

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.55  E-value=6.4e-11  Score=119.46  Aligned_cols=503  Identities=12%  Similarity=0.057  Sum_probs=291.6

Q ss_pred             HHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120           31 NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM  110 (634)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  110 (634)
                      ..++..+...|+.|+.++|.++|..||..|+.   +.|- +|.-|+......+...++.++.++.+.++.+.+.      
T Consensus        10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdi---eaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------   79 (1088)
T KOG4318|consen   10 TNFLALHEISGILPNRVTYQSLIARYCTKGDI---EAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------   79 (1088)
T ss_pred             chHHHHHHHhcCCCchhhHHHHHHHHcccCCC---cccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence            46788899999999999999999999999998   6666 8888887776778889999999999999988876      


Q ss_pred             HHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC-ChhHH
Q 047120          111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG-IR-DSVSY  188 (634)
Q Consensus       111 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-~~~~~  188 (634)
                           .|..+||..++.+|.+.||+.. .+..++-           .-.++..+...|.-.....++-.+. .| -...-
T Consensus        80 -----ep~aDtyt~Ll~ayr~hGDli~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda  142 (1088)
T KOG4318|consen   80 -----EPLADTYTNLLKAYRIHGDLIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA  142 (1088)
T ss_pred             -----CCchhHHHHHHHHHHhccchHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhH
Confidence                 6899999999999999999876 2222221           1123333444454444444444432 11 11122


Q ss_pred             HHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC-CCchHHHHHHHHHHhcCChH
Q 047120          189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHGCVKCGKMD  267 (634)
Q Consensus       189 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~  267 (634)
                      ...+....-.|-++.+++++..+.....+. +...+++.+......+++...+.+...+ +++.+|..+++.-..+|+.+
T Consensus       143 ~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d  221 (1088)
T KOG4318|consen  143 ENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD  221 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence            234444555677778888887776542222 1111355555555556666666666666 77777777777777777777


Q ss_pred             HHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHhhhCC----CCChhhHHHHHHHHHHcCCchHHHHHHHHHH
Q 047120          268 DAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQ  339 (634)
Q Consensus       268 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  339 (634)
                      .|..++.+|.+.    +.+-|-.|+-+   .++...+..++.-|.    .|+..|+...+..+..+|....+.       
T Consensus       222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~-------  291 (1088)
T KOG4318|consen  222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE-------  291 (1088)
T ss_pred             hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc-------
Confidence            777777777652    22333333332   444444444444443    255555555554444433311110       


Q ss_pred             hcCCCCCCHhHHHHHHHHHHccC-----ChHH-----HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120          340 CELYLHPDDASLVIVLSAIAQLG-----HIDK-----GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI  409 (634)
Q Consensus       340 ~~~~~~p~~~~~~~ll~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  409 (634)
                         ...+....+++-+.+-.-.|     +.+.     ....++...=.|+.....+|...+... ..|+-++..++...+
T Consensus       292 ---e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l  367 (1088)
T KOG4318|consen  292 ---EGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQL  367 (1088)
T ss_pred             ---cccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhh
Confidence               11122222222222222222     1110     001111111123333334443333322 245555555555444


Q ss_pred             cCC-------ChhHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCCH-----------
Q 047120          410 EDG-------SVDHWNAMINGLAIHG----------------------LGELAFDLLMEMERLSIEPDD-----------  449 (634)
Q Consensus       410 ~~~-------~~~~~~~li~~~~~~~----------------------~~~~A~~~~~~m~~~g~~p~~-----------  449 (634)
                      ..|       ++..|..++.-|.+.-                      ...+..+++...     .||.           
T Consensus       368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~  442 (1088)
T KOG4318|consen  368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSST  442 (1088)
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHH
Confidence            322       2333433333332211                      111222222211     2221           


Q ss_pred             -----------------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC
Q 047120          450 -----------------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP  512 (634)
Q Consensus       450 -----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  512 (634)
                                       ..-+.++..|+..-+..+++..-+.... .-+   ...|..||+.+......+.|..+.++..
T Consensus       443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d  518 (1088)
T KOG4318|consen  443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEID  518 (1088)
T ss_pred             HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence                             1223344445555555555544444333 111   2678999999999999999999999883


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120          513 -----MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK  584 (634)
Q Consensus       513 -----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  584 (634)
                           +..|...+..+...+.+.+....+..+++++.+.-...   ......+.+.....|+.+...++.+-+...|+.-
T Consensus       519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence                 33455677888888899999999999999888743333   3355566666778899999999999998888853

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.54  E-value=3.1e-11  Score=120.70  Aligned_cols=276  Identities=11%  Similarity=0.040  Sum_probs=204.8

Q ss_pred             cCChHHHHHHHhhCCCC--ChhH-HHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHH--HHHHHHHHcCCchHHHHHH
Q 047120          263 CGKMDDAQALFDKMPKR--DVVS-WANMIDGYAKLGRVDIARRLFDEMPK--RDVVACN--AMMGGYVRNGYSMKALEIF  335 (634)
Q Consensus       263 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~  335 (634)
                      .|+++.|.+.+....+.  ++.. +........+.|+.+.|...+.++.+  |+.....  .....+...|+++.|...+
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            58888888777765442  2222 33334444778888888888888765  3332222  2356777888888888888


Q ss_pred             HHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-------HHHHHHHHhHhcCCHHHHHHHHH
Q 047120          336 DNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK-------HGVALIDMYSKCGSIENAIKVFE  407 (634)
Q Consensus       336 ~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~  407 (634)
                      +++.+.   .|+ ......+...+.+.|+++.+..++..+.+.+..++..       .|..++.......+.+...++++
T Consensus       177 ~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        177 DKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888744   453 4567777788888888888888888888876543221       22333444445556677778887


Q ss_pred             hcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120          408 QIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE  484 (634)
Q Consensus       408 ~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  484 (634)
                      .+.   +.++.....+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+.  .+-|
T Consensus       254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~  327 (398)
T PRK10747        254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDT  327 (398)
T ss_pred             hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence            775   357788899999999999999999999999874  5555322  233444669999999999998874  2445


Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      ...+..+...+.+.|++++|.+.|+.+ ...|+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            667889999999999999999999998 778999999999999999999999999999998754

>TIGR00540 hemY_coli hemY protein

Probab=99.51  E-value=5e-11  Score=119.95  Aligned_cols=278  Identities=10%  Similarity=-0.006  Sum_probs=144.5

Q ss_pred             hcCChHHHHHHHhhCCC--CCh-hHHHHHHHHHHHcCChHHHHHHhhhCCC--CCh--hhHHHHHHHHHHcCCchHHHHH
Q 047120          262 KCGKMDDAQALFDKMPK--RDV-VSWANMIDGYAKLGRVDIARRLFDEMPK--RDV--VACNAMMGGYVRNGYSMKALEI  334 (634)
Q Consensus       262 ~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~  334 (634)
                      ..|+++.|.+.+.+..+  |+. ..+-.....+.+.|+.+.|.+.+.+..+  |+.  .........+...|+++.|...
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            45777777777666544  222 2233344556666777777777766532  222  2233345666667777777777


Q ss_pred             HHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh---H----hcCCHHHHHHHH
Q 047120          335 FDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY---S----KCGSIENAIKVF  406 (634)
Q Consensus       335 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~  406 (634)
                      ++.+.+.   .| +......+...+...|+++.+.+.+..+.+.+..+.......-..++   .    .....+...+.+
T Consensus       176 l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       176 VDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            7777744   34 33456666667777777777777777777765433222211111111   1    111223333344


Q ss_pred             HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120          407 EQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT---FTGLLNACAHAGLVKEGLLCFELMRRIHK  480 (634)
Q Consensus       407 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  480 (634)
                      +...+   .++..+..++..+...|+.++|.+.+++..+.  .||...   ...........++.+.+.+.++...+...
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p  330 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD  330 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence            44332   35556666666666666666666666666654  333321   01111112233555555555555544221


Q ss_pred             cccChhHHHHHHHHHhccCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120          481 LEPELQHYGCMVDILGRAGHIEAARNLIED--M-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  544 (634)
                      -.|+.....++...+.+.|++++|.+.|+.  . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus       331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            111113344555555555666666655552  2 344555555555555555555555555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.4e-10  Score=107.44  Aligned_cols=419  Identities=13%  Similarity=0.132  Sum_probs=238.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh-hHHHHHHHHH
Q 047120          153 DLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL-ISWNSVLNGY  228 (634)
Q Consensus       153 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~ll~~~  228 (634)
                      +...|-.....-...+++..|..+|+....   .+...|--.+..-.++.....|..++++....-|-+ ..|...+-+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            444555555555566788888899988764   466678888888888888899999988887664443 2334444444


Q ss_pred             HhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHh
Q 047120          229 AQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMP--KRDVVSWANMIDGYAKLGRVDIARRLF  304 (634)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (634)
                      -..|+ +..|.++|++-.+  |+...|.+.|+.-.+-..++.|..+|++..  .|++.+|-.....-.++|+...|..+|
T Consensus       152 E~LgN-i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  152 EMLGN-IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             HHhcc-cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            44566 7778888777665  777777777777777777777777777754  477777777777777777777777777


Q ss_pred             hhCCC--C----ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHHccCChHHHHHHH---H
Q 047120          305 DEMPK--R----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD---ASLVIVLSAIAQLGHIDKGVAIH---R  372 (634)
Q Consensus       305 ~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~---~  372 (634)
                      +...+  .    +...+.++..-=.+...++.|.-+|+-....   -|..   ..|.....---+-|+........   +
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            66553  1    1223333333333455666676777666643   2322   23333333333444444333322   1


Q ss_pred             HHH-H---cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC--h---hHHHHHHH--------HHHHcCChHHHHH
Q 047120          373 YLE-K---DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--V---DHWNAMIN--------GLAIHGLGELAFD  435 (634)
Q Consensus       373 ~~~-~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~li~--------~~~~~~~~~~A~~  435 (634)
                      .+. +   ...+.|-.++--.+......|+.+...++|++....-  .   ..|...|.        .-....+.+.+.+
T Consensus       308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            221 0   1123344444455555555566666666666554210  0   11221111        1123455666666


Q ss_pred             HHHHHHHCCCCCC-HHHHHHH----HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHh
Q 047120          436 LLMEMERLSIEPD-DITFTGL----LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED  510 (634)
Q Consensus       436 ~~~~m~~~g~~p~-~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  510 (634)
                      +++..++  +-|- ..||.-+    ..-..+..++..|.+++..+.   |.-|...+|...|..=.+.++++...+++++
T Consensus       388 vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEk  462 (677)
T KOG1915|consen  388 VYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEK  462 (677)
T ss_pred             HHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            6666655  2332 3333322    222334556666666666554   3355555666666666666666666666665


Q ss_pred             C-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc--hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          511 M-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS--SYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       511 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      . ...| +-.+|......-...|+.+.|..+|+-++.+...+..  .|-.+++.-...|.++.|..+++++.+.
T Consensus       463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            4 2223 3445555555555666666666666666655422211  4445555555666666666666666554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=4.1e-12  Score=124.61  Aligned_cols=247  Identities=13%  Similarity=0.097  Sum_probs=198.0

Q ss_pred             CCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcCCHHHHH
Q 047120          326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF--SLNGKHGVALIDMYSKCGSIENAI  403 (634)
Q Consensus       326 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~  403 (634)
                      -+..+|+..|......  +.-..+....+..+|-..++++++..+|+.+.+..-  --+..+|.+.+--+-+.=.+.---
T Consensus       333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La  410 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA  410 (638)
T ss_pred             HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence            3568999999995533  333446777889999999999999999999987531  235677777765543322222111


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcc
Q 047120          404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE  482 (634)
Q Consensus       404 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  482 (634)
                      +-+-...+..+.+|-++..+|.-+++.+.|++.|++..+  +.| ...+|+.+..-+.....+|.|...|+.+..     
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----  483 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----  483 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence            222223355788999999999999999999999999987  477 467999999999999999999999998875     


Q ss_pred             cChhH---HHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120          483 PELQH---YGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL  557 (634)
Q Consensus       483 ~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  557 (634)
                      .|...   |-.|+-.|.++++++.|+-.|+++ .+.|. .+....+...+.+.|+.++|++++++++.++|.+|-.-+.-
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            34444   445677899999999999999998 67776 55667777789999999999999999999999999999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhCC
Q 047120          558 SNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       558 ~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +.++...+++++|.+.++++++.-
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~v  587 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELV  587 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhC
Confidence            999999999999999999997763

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.48  E-value=5.1e-10  Score=111.76  Aligned_cols=424  Identities=12%  Similarity=0.039  Sum_probs=264.4

Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCC--CChhHHHH
Q 047120          149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNS  223 (634)
Q Consensus       149 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--p~~~~~~~  223 (634)
                      .+.-|+.+|..|.-++..+|+++.+.+.|++...   .....|+.+...+...|.-..|..+++......  |+..+.-.
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            3567888999999999999999999999998764   355689999999999999999999998877664  54444333


Q ss_pred             H-HHHHHhcCCcHHHHHHHHhhCCC--------CCchHHHHHHHHHHh-----------cCChHHHHHHHhhCCC---CC
Q 047120          224 V-LNGYAQLKSGLQFAWQIFEKMPE--------RDLISWNSMLHGCVK-----------CGKMDDAQALFDKMPK---RD  280 (634)
Q Consensus       224 l-l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~---~~  280 (634)
                      + -..|.+.-+..+++.++-.++..        .....|..+.-+|..           .....++++.+++..+   .|
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3 33343322214444444433322        233444444444431           1223456666666643   23


Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHhhhCC----CCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 047120          281 VVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS  356 (634)
Q Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~  356 (634)
                      ..+...+.--|+..++++.|.+..++..    ..+...|..+.-.+...+++.+|+.+.+....+.|.  |......-+.
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~  555 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH  555 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence            3333334445666777777777766554    346677888888888888888888888877765322  1111222222


Q ss_pred             HHHccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----C-C-ChhHHHHHHHHHHHcC-
Q 047120          357 AIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----D-G-SVDHWNAMINGLAIHG-  428 (634)
Q Consensus       357 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~-~-~~~~~~~li~~~~~~~-  428 (634)
                      .-...++.+++......+...- -.+.          ....++-....+....+.    + . .+.++..+.......+ 
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~  625 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK  625 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence            2233566666665554444310 0000          001111112222222222    0 1 1222322222221111 


Q ss_pred             --ChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120          429 --LGELAFDLLMEMERLSIEPDD--------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA  498 (634)
Q Consensus       429 --~~~~A~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  498 (634)
                        .++..      +...-..|+.        ..|......+.+.+..++|...+.++.+.  .+..+..|......+...
T Consensus       626 ~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~  697 (799)
T KOG4162|consen  626 SAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVK  697 (799)
T ss_pred             hcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHH
Confidence              11111      1111122221        24455566778889999999888888762  244566788888899999


Q ss_pred             CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120          499 GHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEP--VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       499 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  574 (634)
                      |.+++|.+.|... .+.|+ +.+..++...+...|+...|..  ++..+++.+|.++.+|+.++.++.+.|+.++|.+.|
T Consensus       698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            9999999999887 66777 5588899999999999988888  999999999999999999999999999999999999


Q ss_pred             HHHHhCCCccCCceeEEEE
Q 047120          575 SMMKERNLKKLPGCSWIEL  593 (634)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~  593 (634)
                      ....+... .+|-..|..+
T Consensus       778 ~aa~qLe~-S~PV~pFs~i  795 (799)
T KOG4162|consen  778 QAALQLEE-SNPVLPFSNI  795 (799)
T ss_pred             HHHHhhcc-CCCccccccc
Confidence            98876643 2444455443

>TIGR00540 hemY_coli hemY protein

Probab=99.47  E-value=9.4e-11  Score=117.96  Aligned_cols=280  Identities=10%  Similarity=-0.010  Sum_probs=204.9

Q ss_pred             HHcCChHHHHHHhhhCCC--CChh-hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHHccCChHH
Q 047120          292 AKLGRVDIARRLFDEMPK--RDVV-ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDK  366 (634)
Q Consensus       292 ~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~  366 (634)
                      ...|+++.|.+.+....+  ++.. .+-....+..+.|+++.|.+++.+..+.   .|+..  ........+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHH
Confidence            457999999999988765  3332 3344456788889999999999998754   46653  33334677788999999


Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHH----HHHHHHHHcCChHHHHHHHHH
Q 047120          367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWN----AMINGLAIHGLGELAFDLLME  439 (634)
Q Consensus       367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~~~~~~A~~~~~~  439 (634)
                      |...++.+.+.. +-++.+...+...+...|++++|.+.+..+.+.   +...+.    .........+..+++.+.+..
T Consensus       172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999876 557788899999999999999999999988743   333332    111222333344444556666


Q ss_pred             HHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH---HHHHHHHHhccCCHHHHHHHHHhC-C
Q 047120          440 MERLSI---EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH---YGCMVDILGRAGHIEAARNLIEDM-P  512 (634)
Q Consensus       440 m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~  512 (634)
                      +.+...   +.+...+..+...+...|+.++|.+++++..+.   .|+...   .....-.....++.+.+.+.+++. .
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            655421   126778888999999999999999999999874   344331   112222234457888888888876 4


Q ss_pred             CCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          513 MEPN-D--VIWRTLLSACRNYENLNVGEPVAK--HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       513 ~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ..|+ +  ....++...+.+.|++++|.+.++  .+.+..|++. .+..++.++.+.|+.++|.+++++...
T Consensus       328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4454 3  566789999999999999999999  4666777554 477999999999999999999998644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.47  E-value=1.1e-10  Score=117.92  Aligned_cols=62  Identities=11%  Similarity=0.099  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDS---SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ..|..|+.-+......+.|..+.++....+.   .+-..+..+.+++.+.+...++..+++++.+
T Consensus       492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks  556 (1088)
T KOG4318|consen  492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS  556 (1088)
T ss_pred             hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence            5678888888899999999988888766552   3455788899999999999999999998876

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.2e-10  Score=105.69  Aligned_cols=284  Identities=11%  Similarity=0.101  Sum_probs=184.8

Q ss_pred             HHHHHcCChHHHHHHhhhCCC---CC-hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCC
Q 047120          289 DGYAKLGRVDIARRLFDEMPK---RD-VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGH  363 (634)
Q Consensus       289 ~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~  363 (634)
                      .+|....+.+++..-.+....   ++ ...-+....+.-...++++|+.+|+++.+...... |..+|+.++-.-.....
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            344444455555544444432   22 22222233344556778888888888875422222 34566666544322111


Q ss_pred             hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       364 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                          ..++.+-.-.--+..+.++..+.+-|.-.++.++|...|++..+-   ....|+.+..-|...++...|++-+++.
T Consensus       315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence                111111111112344567777888888888888888888877643   3447888888888888888888888888


Q ss_pred             HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCH
Q 047120          441 ERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPND  517 (634)
Q Consensus       441 ~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~  517 (634)
                      ++-  .| |-..|-.+.++|.-.+...-|+-+|+++...  -+.|...|.+|+++|.+.++.++|++.|...  .-+.+.
T Consensus       391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            863  44 4558888888888888888888888888762  2445777888888888888888888888877  223456


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGM-------DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..+..|...+-+.++.++|...+++-++.       +|....+...|+.-+.+.+++++|..+..+....
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            77888888888888888888888887763       2323334555777788888888888877655433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.2e-10  Score=104.29  Aligned_cols=260  Identities=17%  Similarity=0.143  Sum_probs=168.5

Q ss_pred             hcCChHHHHHHHhhCCCCChhH---HHHHHHHHHHcCChHHHHHHhhhCCC-CCh------hhHHHHHHHHHHcCCchHH
Q 047120          262 KCGKMDDAQALFDKMPKRDVVS---WANMIDGYAKLGRVDIARRLFDEMPK-RDV------VACNAMMGGYVRNGYSMKA  331 (634)
Q Consensus       262 ~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A  331 (634)
                      -..+.++|.++|-+|.+.|..|   .-+|.+.|.+.|..|.|+++-..+.+ ||.      .+...|..-|...|-+|.|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3577888888888888755544   45788888999999999999888765 443      2344567778888999999


Q ss_pred             HHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHH
Q 047120          332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN----GKHGVALIDMYSKCGSIENAIKVFE  407 (634)
Q Consensus       332 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~  407 (634)
                      .++|..+..++..  -......++..|....+|++|+..-+++.+.+-.+.    ...|.-+...+....+++.|...+.
T Consensus       127 E~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         127 EDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999988865222  234667778888888888888888888877654432    2455556666666677777777777


Q ss_pred             hccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120          408 QIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE  484 (634)
Q Consensus       408 ~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  484 (634)
                      +..+.   .+..--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+...   .+.
T Consensus       205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g  281 (389)
T COG2956         205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTG  281 (389)
T ss_pred             HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCC
Confidence            66533   233344455666677777777777777776533222446666667777777777777776666552   233


Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLI-EDMPMEPNDVIWRTLLSA  526 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~  526 (634)
                      ...-..+.+......-.+.|...+ +.+..+|+...+..++..
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~  324 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY  324 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence            333334444433333344444433 334556666666666654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.46  E-value=1.6e-13  Score=131.04  Aligned_cols=226  Identities=14%  Similarity=0.141  Sum_probs=105.3

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcC
Q 047120          353 IVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHG  428 (634)
Q Consensus       353 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~  428 (634)
                      .+...+.+.|++++|.++++...... .+.++..+..+.......++++.|.+.++++...   ++..+..++.. ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            44677789999999999997655444 3556677778888888999999999999998743   34467777777 7899


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI  508 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  508 (634)
                      ++++|.+++.+..+.  .+++..+..++..+...++++++..+++.+......+++...|..+...+.+.|+.++|++.+
T Consensus        92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999887665  456677788888999999999999999998764445667888999999999999999999999


Q ss_pred             HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          509 EDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       509 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +++ ...|+ ......++..+...|+.+++.++++...+..|.+|..+..++.+|...|+.++|..++++..+..
T Consensus       170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            998 55665 67888999999999999999999999998889999999999999999999999999999987743

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.44  E-value=1.7e-08  Score=98.82  Aligned_cols=486  Identities=13%  Similarity=0.089  Sum_probs=237.9

Q ss_pred             ccHHHHHHHHHcCCCcchHHHHHHHHHHC-CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 047120           85 FLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL  163 (634)
Q Consensus        85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  163 (634)
                      ..|-.-+..+..+|+...-...|++.+.. .+......|...+......+-++.+..++++.++.    ++..-.--|..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence            34555555555556665555555554432 22223334555555555555566666666665543    22234445555


Q ss_pred             HHhcCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhCCCh---HHHHHHHhhCccCCCCh--hHHHHHHHHH
Q 047120          164 YVRCGYLEFARQLFDKMGIR----------DSVSYNSMIDGYVKSGNI---ESARELFDSMPIRERNL--ISWNSVLNGY  228 (634)
Q Consensus       164 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~p~~--~~~~~ll~~~  228 (634)
                      +++.+++++|.+.+..+...          +-..|.-+-+..+++-+.   -...++++.+...-+|.  ..|++|.+-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            56666666666666555321          222344444444333222   22334455555444443  3455666666


Q ss_pred             HhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCCh----------------------HHHHHHHhhCCC------
Q 047120          229 AQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKM----------------------DDAQALFDKMPK------  278 (634)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~----------------------~~A~~~~~~~~~------  278 (634)
                      .+.|. ++.|.+++++...  ..+..|..+.++|++-...                      +-.+.-|+.+..      
T Consensus       259 Ir~g~-~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  259 IRSGL-FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HHhhh-hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            66666 6666666665544  2333344444444321111                      011111111110      


Q ss_pred             ---------CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---------CChhhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 047120          279 ---------RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---------RDVVACNAMMGGYVRNGYSMKALEIFDNMQC  340 (634)
Q Consensus       279 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  340 (634)
                               .++..|..-+..  ..|+..+-...+.+..+         .-...|..+.+.|-..|+.+.|..+|++...
T Consensus       338 NsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~  415 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK  415 (835)
T ss_pred             HHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence                     011111111111  11223333333322221         1123455555555556666666666655542


Q ss_pred             cCCCCC-C--HhHHHHHHHHHHccCChHHHHHHHHHHHHc-----------CCCC------chhHHHHHHHHhHhcCCHH
Q 047120          341 ELYLHP-D--DASLVIVLSAIAQLGHIDKGVAIHRYLEKD-----------QFSL------NGKHGVALIDMYSKCGSIE  400 (634)
Q Consensus       341 ~~~~~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~~~~~  400 (634)
                      - ..+- +  ..+|..-...-.+..+++.|..+++.+...           +.++      +..+|...++..-..|-++
T Consensus       416 V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  416 V-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             C-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            2 1100 0  112222223333444555555554443321           0011      1223333344444445555


Q ss_pred             HHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHHH
Q 047120          401 NAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAH---AGLVKEGLLCFE  473 (634)
Q Consensus       401 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---~g~~~~a~~~~~  473 (634)
                      ....+|+++.+-   ++.+--.....+-.+.-++++.+++++-+..--.|+.. .|+..+.-+.+   ...++.|..+|+
T Consensus       495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE  574 (835)
T KOG2047|consen  495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE  574 (835)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            555555554422   22221112222233444566666666544432234433 55555544432   347889999999


Q ss_pred             HhHHhcCcccChhH--HHHHHHHHhccCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          474 LMRRIHKLEPELQH--YGCMVDILGRAGHIEAARNLIEDM--PMEPND--VIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       474 ~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      .+.+  +.+|...-  |-.....=.+.|-...|+++++++  ++++..  ..|+..|.--...=.+.....+|+++++.-
T Consensus       575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L  652 (835)
T KOG2047|consen  575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL  652 (835)
T ss_pred             HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence            9887  66665322  222223334568888899999988  444443  377877766555455666788999999987


Q ss_pred             CCCCc--hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          548 SSNSS--SYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       548 p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      |++-.  .....+++-.+.|..+.|..++.--.+.
T Consensus       653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            76533  4556678888999999999988655443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=1.2e-09  Score=101.08  Aligned_cols=275  Identities=15%  Similarity=0.104  Sum_probs=197.9

Q ss_pred             cCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC----ChhhHHHHHHHHHHcCCchHHHHHH
Q 047120          263 CGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIF  335 (634)
Q Consensus       263 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~  335 (634)
                      .|++.+|++++.+-.+   .....|..-..+--..|+.+.+-+.+.+..++    +....-.........|+++.|..-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            5778888777776554   22334445556666778888888888777653    3344555666777788888888888


Q ss_pred             HHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHhHhcCCHHHHHHHHH
Q 047120          336 DNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG-------KHGVALIDMYSKCGSIENAIKVFE  407 (634)
Q Consensus       336 ~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~  407 (634)
                      .++...   .| +.........+|.+.|++.....++..+.+.+.-.+.       .++..+++-....+..+.-...++
T Consensus       177 ~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         177 DQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            877743   44 3456677777888888888888888888887765543       344445554444455555556677


Q ss_pred             hcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120          408 QIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE  484 (634)
Q Consensus       408 ~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  484 (634)
                      ..+   +.++..-.+++.-+.+.|+.++|.++..+..+++..|+    ....-.+.+.++.+.-++..+...+.++..| 
T Consensus       254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-  328 (400)
T COG3071         254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-  328 (400)
T ss_pred             hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence            665   34677777888888899999999999888888877666    2223345677777777777777766544444 


Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                       ..+.+|...|.+.+.|.+|...|+.. +..|+..+|..+..++.+.|+.++|.+..++++..
T Consensus       329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             67788888899999999999998876 77888899999999999999999999888888744

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=8.9e-10  Score=99.87  Aligned_cols=217  Identities=12%  Similarity=0.070  Sum_probs=108.6

Q ss_pred             hHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH-----HccCChHHHHHHH
Q 047120          297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-----AQLGHIDKGVAIH  371 (634)
Q Consensus       297 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~  371 (634)
                      -+.|++++-.+.+.-+.+.-.|+--|.+.++..+|..+.+++.   ...|-......+..+.     ......+-|.+.|
T Consensus       270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqff  346 (557)
T KOG3785|consen  270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFF  346 (557)
T ss_pred             CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence            3445555544444333344445555666677777776666554   3344333332222221     1112233344444


Q ss_pred             HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047120          372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT  451 (634)
Q Consensus       372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  451 (634)
                      +..-+.+...|                              +...-.++.+.+.-..++++++-++..+..-- .-|..-
T Consensus       347 qlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~F  395 (557)
T KOG3785|consen  347 QLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDF  395 (557)
T ss_pred             HHhcccccccc------------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchh
Confidence            43333332222                              12223344444444555666666666555432 222222


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhc
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL-SACRNY  530 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~  530 (634)
                      -..+..+.+..|++.+|.++|-.+.. ..++.+..-...|.++|.++|.++-|.+++-++..+.+..+...+| .-|.+.
T Consensus       396 n~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~  474 (557)
T KOG3785|consen  396 NLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKA  474 (557)
T ss_pred             hhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            23455666667777777777666543 2222222223455667777777777777776664333444443333 346677


Q ss_pred             CChhHHHHHHHHHhccCC
Q 047120          531 ENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p  548 (634)
                      +.+--|-+.|..+-.++|
T Consensus       475 ~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  475 NEFYYAAKAFDELEILDP  492 (557)
T ss_pred             HHHHHHHHhhhHHHccCC
Confidence            777777777766655554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=2.6e-10  Score=102.18  Aligned_cols=289  Identities=14%  Similarity=0.085  Sum_probs=215.0

Q ss_pred             cCChHHHHHHhhhCCCCChhh---HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHccCChHHHH
Q 047120          294 LGRVDIARRLFDEMPKRDVVA---CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD--ASLVIVLSAIAQLGHIDKGV  368 (634)
Q Consensus       294 ~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~  368 (634)
                      ..+.++|.+.|-+|.+.|+.+   .-+|.+.|.+.|..+.|+.+.+.+....+..-+.  ...-.+..-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            478899999999998766554   4568889999999999999999998663333322  23445667788899999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChh--------HHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD--------HWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                      .+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..        .|--+...+....+.+.|..++.+.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            9999998755 344567778999999999999999998877644333        3555666667788999999999999


Q ss_pred             HHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH
Q 047120          441 ERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV  518 (634)
Q Consensus       441 ~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~  518 (634)
                      .+.  .|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...|..+|.+.|+.++....+.++ ...+...
T Consensus       207 lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         207 LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            876  45543 5556677888999999999999999873 32223566788999999999999999999887 4455555


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh--cCCCchHHHHHHHHHHhCCCccCC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA--GLGMWNDARRVRSMMKERNLKKLP  586 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~  586 (634)
                      .-..+...-....-.+.|...+-+-+...|.--..|..+-.-+.  ..|.+.+...+++.|....++..|
T Consensus       284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~  353 (389)
T COG2956         284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP  353 (389)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence            55555555555566677777777777777755444443333333  346688888899999877666555

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=1.1e-10  Score=108.83  Aligned_cols=197  Identities=14%  Similarity=0.039  Sum_probs=156.7

Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC  459 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  459 (634)
                      ...+..+...+...|++++|...+++..+   .+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            45566677777788888888888876652   345677778888888999999999999888753 23456777788888


Q ss_pred             hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 047120          460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      ...|++++|.+.++.+............+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999998763222233456777888899999999999999887 33444 567888888899999999999


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999988888888888999999999999999998887543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.5e-08  Score=95.56  Aligned_cols=279  Identities=11%  Similarity=-0.001  Sum_probs=218.3

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCC---hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 047120          279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD---VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL  355 (634)
Q Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll  355 (634)
                      .+........+-+...+++.+..++++.+.+.|   ...+..-|.++...|+..+-..+=.++.+.  .+-...+|-.+.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence            455566667777888999999999999988743   445666677888999998888888888854  233457899998


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHH
Q 047120          356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGEL  432 (634)
Q Consensus       356 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  432 (634)
                      --|...|+..+|.++|.+..... +.-...|-...+.|+-.|+-+.|+..+..+.+   .....+--+..-|.+.++...
T Consensus       320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence            88889999999999999887643 22345788889999999999999988876542   222233334556888999999


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-Ccc----cChhHHHHHHHHHhccCCHHHHHH
Q 047120          433 AFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH-KLE----PELQHYGCMVDILGRAGHIEAARN  506 (634)
Q Consensus       433 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~  506 (634)
                      |.++|.+...  +.|+ +..++-+.-.....+.+.+|..+|+.....- .+.    .-..+++.|+.+|.+.+.+++|+.
T Consensus       399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            9999999885  5665 5577777777778899999999999877311 011    134568999999999999999999


Q ss_pred             HHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          507 LIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       507 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      .+++.  -.+.|..++.++.-.|...|+++.|...|.+++.+.|++..+-..|..+..
T Consensus       477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            99987  345678889999999999999999999999999999999777666665543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=5.4e-08  Score=94.73  Aligned_cols=457  Identities=11%  Similarity=0.041  Sum_probs=256.4

Q ss_pred             HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhc
Q 047120           89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRC  167 (634)
Q Consensus        89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~  167 (634)
                      +=+.-+.++|++++|....++++..+ +-+...+..-+-++.+.+.+++|+.+.+.   .+. ..+...+---..+..+.
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHc
Confidence            34556677889999999999998854 44455677778888899999999855433   221 11111111122334478


Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC
Q 047120          168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE  247 (634)
Q Consensus       168 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  247 (634)
                      +..++|++.++.....+..+...-...+.+.|++++|+++|+.+.+...+..--....+..+...  ...+. +.+..+.
T Consensus        93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~-~~q~v~~  169 (652)
T KOG2376|consen   93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ-LLQSVPE  169 (652)
T ss_pred             ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH-HHHhccC
Confidence            89999999998665556667777778888999999999999999765332222222222211110  11111 3444444


Q ss_pred             CCchHHHHHH---HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCCh-hhHHHHHHHHH
Q 047120          248 RDLISWNSML---HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV-VACNAMMGGYV  323 (634)
Q Consensus       248 ~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~  323 (634)
                      ....+|..+.   -.++..|++.+|+++++...+-...+       +. .++.  ..   +.+ +... .+-..|...+.
T Consensus       170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------l~-~~d~--~e---Eei-e~el~~IrvQlayVlQ  235 (652)
T KOG2376|consen  170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------LE-DEDT--NE---EEI-EEELNPIRVQLAYVLQ  235 (652)
T ss_pred             CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------hc-cccc--ch---hhH-HHHHHHHHHHHHHHHH
Confidence            3333444433   34456777777777776542100000       00 0000  00   000 0000 12233445566


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhHH----HHHHHHHHccCChH-HHHHHH------------HHHHHcCCCCchhHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDASL----VIVLSAIAQLGHID-KGVAIH------------RYLEKDQFSLNGKHG  386 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~----~~ll~~~~~~~~~~-~a~~~~------------~~~~~~~~~~~~~~~  386 (634)
                      ..|+..+|..++......  ..+|....    |.++..-....-++ .+...+            ..+...   --..++
T Consensus       236 ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~---qk~~i~  310 (652)
T KOG2376|consen  236 LQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK---QKQAIY  310 (652)
T ss_pred             HhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHH
Confidence            677777777777777654  23444221    11211111111111 011111            111100   001112


Q ss_pred             HHHHHHhHhcCCHHHHHHHHHhccCCC-hhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 047120          387 VALIDMYSKCGSIENAIKVFEQIEDGS-VDHWNAMINGLAI--HGLGELAFDLLMEMERLSIEPDD--ITFTGLLNACAH  461 (634)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~  461 (634)
                      ...+-...-.+..+.+.++-....... ...+.+++....+  ...+..|.+++...-+.  .|..  ......+.....
T Consensus       311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is  388 (652)
T KOG2376|consen  311 RNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS  388 (652)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence            222222223456667777766666433 2344444443322  23477888888887765  4443  455566667788


Q ss_pred             cCCHHHHHHHHH--------HhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-----CCCCCHH----HHHHHH
Q 047120          462 AGLVKEGLLCFE--------LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-----PMEPNDV----IWRTLL  524 (634)
Q Consensus       462 ~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~  524 (634)
                      .|+++.|.+++.        .+.+   +...+.+..++...|.+.++-+.|..++.+.     ...+...    ++.-+.
T Consensus       389 ~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa  465 (652)
T KOG2376|consen  389 QGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA  465 (652)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence            999999999998        4433   2334456677888888888877777777665     1122223    333333


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      ..-.+.|+-++|..+++++++.+|++......++.+|++. +.+.|..+-+.+
T Consensus       466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            4445679999999999999999999999999999998865 455666665544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=2.6e-09  Score=98.96  Aligned_cols=276  Identities=13%  Similarity=0.078  Sum_probs=157.6

Q ss_pred             cCChHHHHHHhhhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 047120          294 LGRVDIARRLFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI  370 (634)
Q Consensus       294 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  370 (634)
                      .|++..|++...+-.+.   ....|..-..+.-+.|+.+.+-.++.+..+. .-.++..............|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            47777777777665442   2233444445555667777777777776633 1123333444445556666777777776


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 047120          371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS-----------VDHWNAMINGLAIHGLGELAFDLLME  439 (634)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~A~~~~~~  439 (634)
                      ...+.+.+ +-++.+......+|.+.|++.....++.++.+..           ..+|+.++.-....+..+.-...++.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            66666654 3455666666677777777777777776665431           12455555444444444443444444


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCH
Q 047120          440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPND  517 (634)
Q Consensus       440 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~  517 (634)
                      .-.+ .+-++..-..++.-+.+.|+.++|.++.++..+ .+..|..    ...-...+-++.+.-++..++.  ..+.++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            3332 333455555566666667777777777666665 3333331    1112234555555544444443  222334


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      -.+.+|...|.+.+.+.+|...++.+++..| +...|..++.+|.+.|+..+|.++.++..
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            5666677777777777777777776666654 34567777777777777777777776654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2.7e-08  Score=92.34  Aligned_cols=389  Identities=10%  Similarity=0.016  Sum_probs=244.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHhCCChH-HHHHHHhhCccCCCChhHHHHHHHHHHhc
Q 047120          154 LFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE-SARELFDSMPIRERNLISWNSVLNGYAQL  231 (634)
Q Consensus       154 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~p~~~~~~~ll~~~~~~  231 (634)
                      ...-...+.+|...++-+.|...+.+.+.. ...--|.|+..+.+.|.-+ ++.--+.+....-|-   -...|.+..+.
T Consensus        97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~---aL~~i~~ll~l  173 (564)
T KOG1174|consen   97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM---ALQVIEALLEL  173 (564)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch---HHHHHHHHHHH
Confidence            334445667777778888888888777653 3334444444444433222 222222222221111   11111111111


Q ss_pred             C-CcHHHHHHHHhhCCCCCch-HHHHHHHHHH--hcCChHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHH
Q 047120          232 K-SGLQFAWQIFEKMPERDLI-SWNSMLHGCV--KCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARR  302 (634)
Q Consensus       232 ~-~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~  302 (634)
                      + ++.+.+.-......-++.. +....+.+++  -.++...|...+-.+.     ..|+.....+.+.+...|+.++|..
T Consensus       174 ~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~  253 (564)
T KOG1174|consen  174 GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED  253 (564)
T ss_pred             hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence            1 1123333222222223332 3333344443  3344444444433222     3678888889999999999999999


Q ss_pred             HhhhCCCCChhhHHH---HHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 047120          303 LFDEMPKRDVVACNA---MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF  379 (634)
Q Consensus       303 ~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  379 (634)
                      .|++..--|+.+...   ..-.+.+.|+++....+...+...  ..-....|..-+...-...+++.|..+-+..++.. 
T Consensus       254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-  330 (564)
T KOG1174|consen  254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-  330 (564)
T ss_pred             HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence            998877544433222   233456778888888777777633  11222333333344456677888888777777654 


Q ss_pred             CCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047120          380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL  456 (634)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll  456 (634)
                      +.+...+-.-..++...+++++|.-.|+...   ..+..+|..|+.+|...|++.+|...-+...+. +..+..++..+.
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g  409 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG  409 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc
Confidence            3344555555677888899999988888765   347789999999999999999998887776654 344555666553


Q ss_pred             -HHHh-ccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 047120          457 -NACA-HAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYEN  532 (634)
Q Consensus       457 -~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~  532 (634)
                       ..|. ...--++|..++++..+   +.|+ ....+.+...+.+.|..++++.++++. ...||....+.|...+...+.
T Consensus       410 ~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  410 TLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE  486 (564)
T ss_pred             ceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence             3333 33445788888887765   3565 455677888899999999999999887 678999999999999999999


Q ss_pred             hhHHHHHHHHHhccCCCCCc
Q 047120          533 LNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       533 ~~~a~~~~~~~~~~~p~~~~  552 (634)
                      +++|...|..+++++|.+..
T Consensus       487 ~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  487 PQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHHHHHHHHHHhcCccchH
Confidence            99999999999999998743

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=2e-07  Score=95.88  Aligned_cols=243  Identities=13%  Similarity=0.214  Sum_probs=166.0

Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----------
Q 047120          310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-----------  378 (634)
Q Consensus       310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------  378 (634)
                      .|+..-...+.+++..+-+.+-+++++++.-.+..-........++-.-+-.-+.....++.+++-...           
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence            466667778899999999999999999987543222222222222222222223333344433333221           


Q ss_pred             ------------CCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 047120          379 ------------FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE  446 (634)
Q Consensus       379 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  446 (634)
                                  +..+......|++   .-+.++.|.++-+++.  .+..|..+..+-.+.|...+|++-|-+.      
T Consensus      1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence                        1111112222221   1233444444444433  3457999999999999999998877653      


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047120          447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA  526 (634)
Q Consensus       447 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~  526 (634)
                      -|+..|..++..+.+.|.|++-.+++..++++ .-+|.+++  .|+-+|++.++..+-.+++.    .|+..-...+..-
T Consensus      1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDR 1203 (1666)
T ss_pred             CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHH
Confidence            36788999999999999999999999988873 44666554  78999999999998877764    4888888889999


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      |...|.++.|.-+|..        .+.|..|+..+...|.++.|...-+++.
T Consensus      1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999888764        3678888899999999988877766553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.29  E-value=6.8e-10  Score=110.45  Aligned_cols=191  Identities=12%  Similarity=0.143  Sum_probs=132.4

Q ss_pred             HHHHhHhcCCHHHHHHHHHhccC--------CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCC-H-H
Q 047120          389 LIDMYSKCGSIENAIKVFEQIED--------GS---VDHWNAMINGLAIHGLGELAFDLLMEMER-----LSIEPD-D-I  450 (634)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~-~-~  450 (634)
                      +...|...+++++|..+|+++..        .+   ..+++.|..+|.+.|++++|...+++..+     .|..+. . .
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            44455555555555555554431        11   12455566666666666666555554332     122222 2 2


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--cccC----hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCC
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHK--LEPE----LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEP  515 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p  515 (634)
                      .++.+...|+..+++++|..+++...+...  +.++    ..+++.|...|...|++++|.++++++         +..+
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            567777788899999999999887766432  2222    456899999999999999999999877         1122


Q ss_pred             C-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc----CCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          516 N-DVIWRTLLSACRNYENLNVGEPVAKHLIGM----DSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       516 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      . ...++.+...|.+.+.+++|.++|.+.+.+    +|..|+   +|..|+.+|.+.|++++|.++.+....
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2 457788889999999999999999888654    455544   788999999999999999999988853

>PF13041 PPR_2: PPR repeat family

Probab=99.29  E-value=4.4e-12  Score=84.43  Aligned_cols=50  Identities=22%  Similarity=0.411  Sum_probs=44.6

Q ss_pred             CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 047120           82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR  131 (634)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  131 (634)
                      ||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78889999999999999999999999999999999999999999988874

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=5.4e-08  Score=88.58  Aligned_cols=440  Identities=12%  Similarity=0.069  Sum_probs=236.6

Q ss_pred             HHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHH-HhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 047120           91 IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA-CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY  169 (634)
Q Consensus        91 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  169 (634)
                      +.-+..++++..|+.+++--...+-. ........|.. +...|++++|...+..+.+.. .++...+-.|.-++.-.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~  106 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ  106 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence            56666677888888888765543311 12234444443 347788888888887777643 5566666666666666777


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCC
Q 047120          170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD  249 (634)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  249 (634)
                      +.+|..+-+..++ +...-..|...--+.++-++-..+-+.+....                                  
T Consensus       107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----------------------------------  151 (557)
T KOG3785|consen  107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----------------------------------  151 (557)
T ss_pred             HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----------------------------------
Confidence            7777777665543 22222333344444555444444333332211                                  


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHH-HHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHH
Q 047120          250 LISWNSMLHGCVKCGKMDDAQALFDKMPKR--DVVSWAN-MIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYV  323 (634)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~  323 (634)
                       ..-.++.+.....-.+.+|++++.++...  +....|. +.-.|.+..-++-+.++++--..  | ++.+.|.......
T Consensus       152 -EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f  230 (557)
T KOG3785|consen  152 -EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF  230 (557)
T ss_pred             -HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence             01111222222233344444444444432  2222222 12233444444444444332221  2 2233343333333


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH----HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI----AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI  399 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  399 (634)
                      +.=.-..|.+-.+.+...  +...   |-..-..|    .--.+-+.|.+++--+.+.    -+.....|+-.|.+.+++
T Consensus       231 Rl~ngr~ae~E~k~ladN--~~~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dV  301 (557)
T KOG3785|consen  231 RLINGRTAEDEKKELADN--IDQE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDV  301 (557)
T ss_pred             hhhccchhHHHHHHHHhc--cccc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccH
Confidence            332222333333333322  1100   11111111    1112345555555444332    123333566668889999


Q ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHH
Q 047120          400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGL-------GELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       400 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      .+|..+...+...++.-|-.-.-.++..|+       ..-|...|+-.-+.+..-|.. .--.+..++.-..++++.+-+
T Consensus       302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y  381 (557)
T KOG3785|consen  302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY  381 (557)
T ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            999999888876666555443334444443       344555555544444443322 233444555556788999999


Q ss_pred             HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHhcCChhHHHHHHHHHhccC-
Q 047120          472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-ME-PNDVIWRTLL-SACRNYENLNVGEPVAKHLIGMD-  547 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~-  547 (634)
                      +..+.. +-...|...+ .+..+++..|.+.+|+++|-.+. .+ .|..+|.+++ ..|.+.+..+.|+.++-+   .+ 
T Consensus       382 lnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t  456 (557)
T KOG3785|consen  382 LNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNT  456 (557)
T ss_pred             HHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCC
Confidence            998877 4444444444 47899999999999999998882 22 4566776555 557889999999866543   33 


Q ss_pred             CCC-CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          548 SSN-SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       548 p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      |.+ -.....+++.|.+++.+=-|-+.|+.+...+.
T Consensus       457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            322 23455567788899998888888888876644

>PRK12370 invasion protein regulator; Provisional

Probab=99.26  E-value=1.7e-09  Score=113.12  Aligned_cols=246  Identities=13%  Similarity=0.026  Sum_probs=179.8

Q ss_pred             CCchHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHH---------ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047120          326 GYSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIA---------QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK  395 (634)
Q Consensus       326 g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  395 (634)
                      ++.++|+.+|++..   ...|+.. .+..+..++.         ..+++++|...++++.+.. +.+...+..+..++..
T Consensus       275 ~~~~~A~~~~~~Al---~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~  350 (553)
T PRK12370        275 YSLQQALKLLTQCV---NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI  350 (553)
T ss_pred             HHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            34578888998888   4467543 4444433332         2345788999999888865 4567788888888999


Q ss_pred             cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHH
Q 047120          396 CGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       396 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      .|++++|...|+++.+   .+...+..+...+...|++++|+..+++..+.  .|+.. .+..++..+...|++++|...
T Consensus       351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            9999999999998763   35567888999999999999999999999885  55532 333445556678999999999


Q ss_pred             HHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          472 FELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       472 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      ++++.+. . .| +...+..+..+|...|++++|...++++ +..|+.. ..+.+...+...|  +.|...++++++...
T Consensus       429 ~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~  504 (553)
T PRK12370        429 GDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ  504 (553)
T ss_pred             HHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence            9988762 1 34 3445777888999999999999999987 5556644 4455555667777  488888888777654


Q ss_pred             CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       549 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..+.....+..+|.-.|+-+.+... +++.+.+-
T Consensus       505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            4443444477778888888777777 88877654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=3.4e-10  Score=101.40  Aligned_cols=229  Identities=13%  Similarity=0.157  Sum_probs=151.4

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047120          316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK  395 (634)
Q Consensus       316 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  395 (634)
                      +.+.++|.+.|-+.+|.+.|+.....   .|-..||..+-.+|.+..+++.|..++.+-.+. ++.++.........+..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            46777888888888888888777744   566667777777777777777777777766654 34454444555566666


Q ss_pred             cCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047120          396 CGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       396 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      .++.++|.++|+...+.   ++.....+...|.-.++++-|+.+++++.+.|+. ++..|..+.-+|.-.+++|-++..|
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            66666666666655432   3333444445555556666666666666665543 4455555555555555555555544


Q ss_pred             HHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      +.+...                                 ...|+  ..+|..+.......||+..|.+.|+-++..+|++
T Consensus       382 ~RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h  428 (478)
T KOG1129|consen  382 QRALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH  428 (478)
T ss_pred             HHHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence            444331                                 11233  3466677777777888888888888888888888


Q ss_pred             CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ...++.|+.+-.+.|++++|..++....+...
T Consensus       429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  429 GEALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            88888888888888888888888888766543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=4.4e-07  Score=84.56  Aligned_cols=384  Identities=12%  Similarity=0.057  Sum_probs=246.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCc-HHHHHHHHhhCCCCCchHHHHHHHHHHhc--
Q 047120          187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKC--  263 (634)
Q Consensus       187 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--  263 (634)
                      .-.-++.+|-..++-+.|+..+...... ......+.++..+.+.|.. .+.... +......-+.... .|.+..+.  
T Consensus        99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~-ykevvrecp~aL~-~i~~ll~l~v  175 (564)
T KOG1174|consen   99 QRRRAAECYRQIGNTDMAIETLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLA-YKEVIRECPMALQ-VIEALLELGV  175 (564)
T ss_pred             HHHHHHHHHHHHccchHHHHHHhcCCcc-ccchhHHHHHHHHHhccccccHHHHh-hhHHHHhcchHHH-HHHHHHHHhh
Confidence            3445677788888999999998887654 1222334444444444331 111111 1111000011100 01111110  


Q ss_pred             CChHHHHHHHhhCCC-CChhHHHHHHHHHHH--cCChHHHHHHhhhCC-----CCChhhHHHHHHHHHHcCCchHHHHHH
Q 047120          264 GKMDDAQALFDKMPK-RDVVSWANMIDGYAK--LGRVDIARRLFDEMP-----KRDVVACNAMMGGYVRNGYSMKALEIF  335 (634)
Q Consensus       264 g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~  335 (634)
                      .-.+.+-.....+.- ++..+....+.++..  .++...|...+-.+.     ..|+.....+...+...|+.++|+..|
T Consensus       176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F  255 (564)
T KOG1174|consen  176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF  255 (564)
T ss_pred             cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence            011111111111111 223333344444443  445455554443333     357888999999999999999999999


Q ss_pred             HHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC--
Q 047120          336 DNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG--  412 (634)
Q Consensus       336 ~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--  412 (634)
                      ++..   .+.|+..+ .....-.+.+.|+.+....+...+.... ..+...|-.-........+++.|+.+-++..+.  
T Consensus       256 e~~~---~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~  331 (564)
T KOG1174|consen  256 SSTL---CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP  331 (564)
T ss_pred             HHHh---hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc
Confidence            9998   45676543 2222333467888888888777766532 123333333444556678899999999887754  


Q ss_pred             -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHH
Q 047120          413 -SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC  490 (634)
Q Consensus       413 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  490 (634)
                       +...|-.-...+...++.++|.-.|+....  +.|. ..+|..|+.+|...|++.+|...-+...+.  +..+..+...
T Consensus       332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL  407 (564)
T KOG1174|consen  332 RNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTL  407 (564)
T ss_pred             ccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhh
Confidence             444555555778899999999999999886  4654 579999999999999999999887776653  3345555444


Q ss_pred             HH-HHHh-ccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120          491 MV-DILG-RAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       491 l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  566 (634)
                      +. ..+. ...--++|.+++++. .+.|+ ....+.+...|...|..+.++.++++.+...|+. .....|++++...+.
T Consensus       408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE  486 (564)
T ss_pred             hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence            42 2222 223357899999987 77888 4477778888999999999999999999888754 688999999999999


Q ss_pred             chHHHHHHHHHHhCCC
Q 047120          567 WNDARRVRSMMKERNL  582 (634)
Q Consensus       567 ~~~A~~~~~~~~~~~~  582 (634)
                      +++|.+.|..+...+.
T Consensus       487 ~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  487 PQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHHHHHHHHHhcCc
Confidence            9999999999877655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.24  E-value=2.5e-08  Score=90.37  Aligned_cols=339  Identities=17%  Similarity=0.198  Sum_probs=217.9

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCChhHHHHHH---HHHHHcCChHHHHHHhhhCCCCChhhHHH---HHHHHHHcCCch
Q 047120          256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI---DGYAKLGRVDIARRLFDEMPKRDVVACNA---MMGGYVRNGYSM  329 (634)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~  329 (634)
                      +.+.+...|++.+|+.-|....+.|+..|.++.   ..|...|+-.-|+.-|.++.+--+..+.+   -...+.+.|.++
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele  123 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE  123 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence            455666677777777777777766666555543   34666666666666666655422222222   234566777777


Q ss_pred             HHHHHHHHHHhcCCCCCCHh----------------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047120          330 KALEIFDNMQCELYLHPDDA----------------SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY  393 (634)
Q Consensus       330 ~A~~~~~~m~~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  393 (634)
                      +|..=|+.....   .|+..                .....+..+...|+...|+.+...+++.. +.+...+..-..+|
T Consensus       124 ~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  124 QAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY  199 (504)
T ss_pred             HHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence            777777777644   33211                12233445566788888888888888754 55778888888999


Q ss_pred             HhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH---HHH---------HH
Q 047120          394 SKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TF---TGL---------LN  457 (634)
Q Consensus       394 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~---~~l---------l~  457 (634)
                      ...|++..|+.-++...   ..+.....-+-..+...|+.+.++...++..+  +.||.. +|   ..|         +.
T Consensus       200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e  277 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE  277 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999998877665543   45666777777788888999988888888886  467753 22   111         11


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNY  530 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~  530 (634)
                      .....++|.++++..+...+.   .|.     ...+..+-.++...|++.+|+....++ .+.|| ..++.--..+|.-.
T Consensus       278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d  354 (504)
T KOG0624|consen  278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD  354 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence            233456777777777766652   333     223455566677778888888877776 55666 55777777778777


Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcch
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV  610 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (634)
                      ..++.|+.-|+++.+.++.+..+-.-          .+.|.++.++..+++.-+..|             +.+.-++.+.
T Consensus       355 E~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRDYYKILG-------------VkRnAsKqEI  411 (504)
T KOG0624|consen  355 EMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRDYYKILG-------------VKRNASKQEI  411 (504)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccchHHHHhh-------------hcccccHHHH
Confidence            88888888888888888776433222          244555555444444333333             2222344556


Q ss_pred             hHHHHHHHhcccCccc
Q 047120          611 RDIYYMLDNMWTPDSV  626 (634)
Q Consensus       611 ~~~~~~~~~~~~~~~~  626 (634)
                      ...|+-+..-|.||-.
T Consensus       412 ~KAYRKlAqkWHPDNF  427 (504)
T KOG0624|consen  412 TKAYRKLAQKWHPDNF  427 (504)
T ss_pred             HHHHHHHHHhcCCccc
Confidence            7779999999999965

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.23  E-value=4.4e-09  Score=97.87  Aligned_cols=161  Identities=14%  Similarity=0.080  Sum_probs=89.7

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACA  460 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~  460 (634)
                      .+..+...+...|++++|.+.+++..   +.+...+..+...+...|++++|...+++.......|. ...+..+...+.
T Consensus        67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (234)
T TIGR02521        67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL  146 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            33344444444444444444444433   12333455555556666666666666666654322222 334555566666


Q ss_pred             ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEP  538 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~  538 (634)
                      ..|++++|...++.+...  .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.++|..
T Consensus       147 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (234)
T TIGR02521       147 KAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR  224 (234)
T ss_pred             HcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            777777777777766652  1223445666667777777777777777665 22 2334455555566666777777777


Q ss_pred             HHHHHhccC
Q 047120          539 VAKHLIGMD  547 (634)
Q Consensus       539 ~~~~~~~~~  547 (634)
                      +.+.+.+..
T Consensus       225 ~~~~~~~~~  233 (234)
T TIGR02521       225 YGAQLQKLF  233 (234)
T ss_pred             HHHHHHhhC
Confidence            766665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=1e-09  Score=98.44  Aligned_cols=191  Identities=13%  Similarity=0.115  Sum_probs=159.7

Q ss_pred             HHHHHHhHhcCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccC
Q 047120          387 VALIDMYSKCGSIENAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT-GLLNACAHAG  463 (634)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g  463 (634)
                      ..+.++|.+.|-+.+|.+.++...  .+-+.+|-.|..+|.+..++..|+.++.+-.+.  .|-.+||. ...+.+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            356778888888888888887665  467788888999999999999999999998874  67666654 5667888899


Q ss_pred             CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120          464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVA  540 (634)
Q Consensus       464 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  540 (634)
                      +.++|.++|+.+.+..  +.+++...++...|.-.++++-|+.+++++   + .-++..|+.+.-.|.-.++++.+...+
T Consensus       305 ~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             hHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence            9999999999998843  346777778888999999999999999986   4 356788888988899999999999999


Q ss_pred             HHHhccCC---CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          541 KHLIGMDS---SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       541 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ++++....   .-.+.|+.++.+....|++.-|.+.|+-....+.
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence            99987652   3466999999999999999999999998876654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.18  E-value=3.8e-09  Score=101.02  Aligned_cols=116  Identities=13%  Similarity=-0.044  Sum_probs=58.9

Q ss_pred             CCchHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120          326 GYSMKALEIFDNMQCELYLHPDD--ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI  403 (634)
Q Consensus       326 g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  403 (634)
                      +..+.++.-+.++.......|+.  ..|..+...+...|+.+.|...|+.+.+.. +.++..+..+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            44455555555555432233322  234444445555566666665555555543 233455555555555555555555


Q ss_pred             HHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047120          404 KVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMER  442 (634)
Q Consensus       404 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~  442 (634)
                      ..|++..+   .+...|..+..++...|++++|++.|++..+
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555432   1233455555555555555555555555554

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=4.4e-09  Score=110.09  Aligned_cols=211  Identities=11%  Similarity=-0.028  Sum_probs=165.2

Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh---------cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCC
Q 047120          362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK---------CGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGL  429 (634)
Q Consensus       362 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~  429 (634)
                      ++.++|...++++.+.. +.+...+..+..++..         .+++++|...++++.+   .+...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            45678999999888764 3345566666655542         3458899999998773   366788888899999999


Q ss_pred             hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHHHH
Q 047120          430 GELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAARNL  507 (634)
Q Consensus       430 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~  507 (634)
                      +++|...|++..+.  .|+ ...+..+..++...|++++|...++.+.+.   .|+. ..+..++..+...|++++|++.
T Consensus       354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            99999999999985  566 557888889999999999999999999874   4442 2333445557778999999999


Q ss_pred             HHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          508 IEDM--PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       508 ~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ++++  ...|+ +..+..+..++...|++++|...++++....|.+......++..|...|  ++|...++++.+.
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            9887  22454 4456777788889999999999999988888888888888888888888  5888888887654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.17  E-value=7.5e-07  Score=87.96  Aligned_cols=124  Identities=13%  Similarity=0.116  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSAC  527 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~  527 (634)
                      |+..++..+-..|+++.|..+++.+...   .|+ ++.|..=.+.+...|++++|...+++. .+ .||...-.-.+.-.
T Consensus       373 t~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm  449 (700)
T KOG1156|consen  373 TLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM  449 (700)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            4555667777888888888888877652   344 445656667778888888888888877 32 23433333455556


Q ss_pred             HhcCChhHHHHHHHHHhccCCCC-------CchHHHH--HHHHhcCCCchHHHHHHHHH
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSN-------SSSYVLL--SNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l--~~~~~~~g~~~~A~~~~~~~  577 (634)
                      .+.++.++|.+++.+--+.+-.-       .-.|+.+  +.+|.++|++..|.+=|..+
T Consensus       450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            67788888887776655444210       1134433  45577777777666655544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=3.1e-08  Score=94.82  Aligned_cols=211  Identities=12%  Similarity=0.075  Sum_probs=119.9

Q ss_pred             ChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHH
Q 047120          363 HIDKGVAIHRYLEKDQ-FSL--NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDL  436 (634)
Q Consensus       363 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~  436 (634)
                      ..+.++.-+.+++... ..|  ....+..+...|...|++++|...|++..   ..++..|+.+...+...|++++|...
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4455555555555421 111  13445566666777777777777776654   23455677777777777777777777


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CC
Q 047120          437 LMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PM  513 (634)
Q Consensus       437 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~  513 (634)
                      |++..+.  .|+ ..++..+..++...|++++|.+.++...+.   .|+..........+...+++++|...+++.  ..
T Consensus       121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            7777653  554 446666666677777777777777776653   333222222222334556677777777553  22


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLI-------GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       514 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .|+...+   .......|+...+ ..++.+.       +..|..+..|..++.++.+.|++++|+..|++..+.++
T Consensus       196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            2332221   1122234444333 2333333       23344556777777777777777777777777766554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.15  E-value=6.2e-07  Score=89.37  Aligned_cols=340  Identities=17%  Similarity=0.136  Sum_probs=148.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCCChh-HHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHH
Q 047120          160 LISLYVRCGYLEFARQLFDKMGIRDSV-SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA  238 (634)
Q Consensus       160 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a  238 (634)
                      -|.+|....+|++|+.+-+....|... .-.+.++++...|+-++|-++-.      .+.. -.+.|..|.+.|.....+
T Consensus       563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~------sdgd-~laaiqlyika~~p~~a~  635 (1636)
T KOG3616|consen  563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE------SDGD-GLAAIQLYIKAGKPAKAA  635 (1636)
T ss_pred             HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc------ccCc-cHHHHHHHHHcCCchHHH
Confidence            455666667777777776665544322 23344555666666666654321      1111 123455666666622222


Q ss_pred             HHHHhhC-CCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChh-hHH
Q 047120          239 WQIFEKM-PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV-ACN  316 (634)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~  316 (634)
                      ...+..- ...|......+..++.+..-+++|-.+|+++..++..     +..|-+-.-+.+|.++-+-.-...++ .-.
T Consensus       636 ~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~fkkgdaf~kaielarfafp~evv~lee  710 (1636)
T KOG3616|consen  636 RAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECFKKGDAFGKAIELARFAFPEEVVKLEE  710 (1636)
T ss_pred             HhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHHHcccHHHHHHHHHHhhCcHHHhhHHH
Confidence            2222211 1145555555555566655666666666655443221     11121211222232222111100111 011


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC  396 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (634)
                      .....+...|+++.|+..|-+...          ....+.+......+.+|+.+++.+.+...  ....|..+.+-|...
T Consensus       711 ~wg~hl~~~~q~daainhfiea~~----------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~  778 (1636)
T KOG3616|consen  711 AWGDHLEQIGQLDAAINHFIEANC----------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANK  778 (1636)
T ss_pred             HHhHHHHHHHhHHHHHHHHHHhhh----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccc
Confidence            112233344444444444433321          12233344444555555555555554322  122344445555555


Q ss_pred             CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120          397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR  476 (634)
Q Consensus       397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  476 (634)
                      |+++.|.++|-+..     .++-.|..|.+.|+|+.|.++-.+..  |.......|..-..-+-+.|++.+|.++|-.+.
T Consensus       779 ~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~  851 (1636)
T KOG3616|consen  779 GDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG  851 (1636)
T ss_pred             hhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence            55555555554432     23334555555555555555544433  112223344444444445555555555543332


Q ss_pred             HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120          477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA  540 (634)
Q Consensus       477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  540 (634)
                           .|+.     -|.+|-+.|..++.+++..+-.-..-..|-..+..-+...|++..|+..|
T Consensus       852 -----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f  905 (1636)
T KOG3616|consen  852 -----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF  905 (1636)
T ss_pred             -----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence                 1331     23445555555555555544310111223333444444445555554444

>PF13041 PPR_2: PPR repeat family

Probab=99.15  E-value=1.5e-10  Score=76.97  Aligned_cols=50  Identities=32%  Similarity=0.472  Sum_probs=43.3

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120          412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH  461 (634)
Q Consensus       412 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  461 (634)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            57788888888888888888888888888888888888888888888874

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=1.1e-07  Score=84.64  Aligned_cols=381  Identities=10%  Similarity=0.019  Sum_probs=217.7

Q ss_pred             HHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCchHHHHH-HHHHHhcCCh
Q 047120          191 MIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSM-LHGCVKCGKM  266 (634)
Q Consensus       191 li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~g~~  266 (634)
                      .+..+++..+++.|++++..-.+..| +....+.+..+|....+ +..|-..++++-.  |...-|... ...+.+.+.+
T Consensus        16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~   94 (459)
T KOG4340|consen   16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY   94 (459)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence            33334444445555555544444433 33333334444444444 5555555554443  322222221 3455667777


Q ss_pred             HHHHHHHhhCCC-CChhHHHHHHHH--HHHcCChHHHHHHhhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120          267 DDAQALFDKMPK-RDVVSWANMIDG--YAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL  342 (634)
Q Consensus       267 ~~A~~~~~~~~~-~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  342 (634)
                      .+|+++...|.. ++...-..-+.+  ....+++..+..++++.. +.+..+.+.......+.|++++|++-|+...+-+
T Consensus        95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen   95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence            788888777765 222222222222  234678888888888888 4666677777777788889999999888888776


Q ss_pred             CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch----------------------------hHHHHHHHHhH
Q 047120          343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG----------------------------KHGVALIDMYS  394 (634)
Q Consensus       343 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~  394 (634)
                      |..|- ..|+..+ +..+.++.+.|.+...+++++|++..+                            ..++.-...+.
T Consensus       175 Gyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey  252 (459)
T KOG4340|consen  175 GYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY  252 (459)
T ss_pred             CCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence            77664 3455544 344668888888888888877653211                            11222233356


Q ss_pred             hcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047120          395 KCGSIENAIKVFEQIED-----GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEG  468 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a  468 (634)
                      +.++++.|.+.+..|+.     .|+++...+.-.- ..+++.+..+-+.-+...  .| ...||..++-.||+..-++-|
T Consensus       253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lA  329 (459)
T KOG4340|consen  253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLA  329 (459)
T ss_pred             hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHH
Confidence            78999999999999974     3677665544322 235566666666666654  44 456999999999999999888


Q ss_pred             HHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC----ChhHHHHHHHHH
Q 047120          469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC-RNYE----NLNVGEPVAKHL  543 (634)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g----~~~~a~~~~~~~  543 (634)
                      -.++.+-....-.-.+...|+.|=......-..++|.+-++.+.-.-....-...+..- .+..    ....+++-|+..
T Consensus       330 ADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~  409 (459)
T KOG4340|consen  330 ADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDET  409 (459)
T ss_pred             HHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            88876533210001223334433222334556777776665541011111111111111 1111    123333444444


Q ss_pred             hccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       544 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +++.-   ......+++|++..++..+.+.|..-.+.
T Consensus       410 LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef  443 (459)
T KOG4340|consen  410 LEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF  443 (459)
T ss_pred             HHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence            44331   13445678899999999999999876554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.14  E-value=4.7e-09  Score=90.01  Aligned_cols=163  Identities=13%  Similarity=0.035  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI  494 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (634)
                      +...|...|.+.|+...|..-+++.++.  .|+. .++..+...|.+.|+.+.|.+.|+.+.+.  -+.+-.+.|.....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F  112 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence            3455777888999999999999998875  6664 48888888899999999999999988763  13346678888888


Q ss_pred             HhccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120          495 LGRAGHIEAARNLIEDMPMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA  570 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  570 (634)
                      +|..|++++|...|+++-..|+    ..+|..+..+..+.|+.+.|+..+++.++.+|..+...-.++....+.|++-.|
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            9999999999999988733333    458888888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 047120          571 RRVRSMMKERNL  582 (634)
Q Consensus       571 ~~~~~~~~~~~~  582 (634)
                      ..++++....+.
T Consensus       193 r~~~~~~~~~~~  204 (250)
T COG3063         193 RLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHhccc
Confidence            999998877665

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.11  E-value=2.7e-06  Score=84.13  Aligned_cols=224  Identities=11%  Similarity=0.009  Sum_probs=127.0

Q ss_pred             hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHH
Q 047120           47 HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL  126 (634)
Q Consensus        47 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  126 (634)
                      ..+...+..|-..- +   ...+++.+.+.+..+. -..|.....-.+..-|+-++|.+....-.+.. .-+.+-|+.+.
T Consensus         9 ~lF~~~lk~yE~kQ-Y---kkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~g   82 (700)
T KOG1156|consen    9 ALFRRALKCYETKQ-Y---KKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLG   82 (700)
T ss_pred             HHHHHHHHHHHHHH-H---HhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHH
Confidence            34555666664333 2   4444444444332111 12333333334445578888888777665532 23444566666


Q ss_pred             HHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHH
Q 047120          127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIES  203 (634)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  203 (634)
                      -.+....++++|..+|..++..+ +-|..++.-+.-.-+..|+++.....-....+   .....|..++.++.-.|+...
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            66666778888888888888765 33556666555555555666655555444332   345578888888888888888


Q ss_pred             HHHHHhhCccC---CCChhHHHHHHHHH------HhcCCcHHHHHHHHhhCCC--CCchHH-HHHHHHHHhcCChHHHHH
Q 047120          204 ARELFDSMPIR---ERNLISWNSVLNGY------AQLKSGLQFAWQIFEKMPE--RDLISW-NSMLHGCVKCGKMDDAQA  271 (634)
Q Consensus       204 A~~~~~~m~~~---~p~~~~~~~ll~~~------~~~~~~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~~~A~~  271 (634)
                      |..++++....   .|+...+......+      .+.|. ++.|.+.+.....  .|-..+ ..-...+.+.+++++|..
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            88888777655   36665554433332      33444 5555555544433  222222 223345556666666666


Q ss_pred             HHhhCCC
Q 047120          272 LFDKMPK  278 (634)
Q Consensus       272 ~~~~~~~  278 (634)
                      ++..+..
T Consensus       241 ~y~~Ll~  247 (700)
T KOG1156|consen  241 VYRRLLE  247 (700)
T ss_pred             HHHHHHh
Confidence            6666654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.10  E-value=1.6e-06  Score=86.59  Aligned_cols=472  Identities=14%  Similarity=0.130  Sum_probs=267.8

Q ss_pred             hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHH
Q 047120           47 HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL  126 (634)
Q Consensus        47 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  126 (634)
                      ..-.+.++++...|..   +.|-+    ++    ..+..+. +.|+.|.+.|.+.+|.+....=..  +..|......+.
T Consensus       590 klk~sy~q~l~dt~qd---~ka~e----lk----~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia  655 (1636)
T KOG3616|consen  590 KLKRSYLQALMDTGQD---EKAAE----LK----ESDGDGL-AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIA  655 (1636)
T ss_pred             HHHHHHHHHHHhcCch---hhhhh----hc----cccCccH-HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHH
Confidence            3446667777777776   55532    32    1233333 567888888888887765433222  334444444444


Q ss_pred             HHHhccCChHHHHHHHHHHHHh-------------c---------CCCChhHH-HHHHHHHHhcCCHHHHHHHHhhCCCC
Q 047120          127 KACSRLGLIEEGLQIHGLLRKV-------------A---------FGSDLFLQ-NCLISLYVRCGYLEFARQLFDKMGIR  183 (634)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~-------------g---------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~  183 (634)
                      .++.+..-+++|-.+|+.+..-             |         ++..+... ...-..+...|+++.|..-|-+.   
T Consensus       656 ~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea---  732 (1636)
T KOG3616|consen  656 AALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA---  732 (1636)
T ss_pred             HHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh---
Confidence            4444444444444444433210             0         00000000 00011112223333333332211   


Q ss_pred             ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhc
Q 047120          184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKC  263 (634)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~  263 (634)
                        .....-+.+......|.+|+.+++.+.......--|..+...|+..|+ ++.|.++|-+..     .++..|..|.+.
T Consensus       733 --~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~d-fe~ae~lf~e~~-----~~~dai~my~k~  804 (1636)
T KOG3616|consen  733 --NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGD-FEIAEELFTEAD-----LFKDAIDMYGKA  804 (1636)
T ss_pred             --hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchh-HHHHHHHHHhcc-----hhHHHHHHHhcc
Confidence              111223445566778888888888887765555667778888888888 999999886643     455668889999


Q ss_pred             CChHHHHHHHhhCCCCC--hhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 047120          264 GKMDDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE  341 (634)
Q Consensus       264 g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  341 (634)
                      |+|++|.++-++...|.  ...|-+-..-+-+.|++.+|.+++-.+..|+..     |..|-+.|..+..+++..+-.  
T Consensus       805 ~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h--  877 (1636)
T KOG3616|consen  805 GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHH--  877 (1636)
T ss_pred             ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhC--
Confidence            99999999988887654  445666666778889999999999888888753     677888899888888876553  


Q ss_pred             CCCCCCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCCh-----
Q 047120          342 LYLHPDD--ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV-----  414 (634)
Q Consensus       342 ~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----  414 (634)
                          |+.  .|...+..-+...|++..|..-|-+..+         |.+.+++|..++-+++|.++-+.-.-.+.     
T Consensus       878 ----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~  944 (1636)
T KOG3616|consen  878 ----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVA  944 (1636)
T ss_pred             ----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHH
Confidence                332  3555666777788888888876654432         45677788888888888877654321111     


Q ss_pred             hHH-------------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120          415 DHW-------------------NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM  475 (634)
Q Consensus       415 ~~~-------------------~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  475 (634)
                      ..|                   ..-+.--+..+.++-|.++-+-..+.. .|.  ....+..-+...|++++|-+.|-++
T Consensus       945 flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen  945 FLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred             HHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHH
Confidence            111                   111222233444454554444333321 122  2233344456789999998877776


Q ss_pred             HHhcCc-------ccChhHH---------HHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 047120          476 RRIHKL-------EPELQHY---------GCMVDILGRAGHIEAARNLIEDMPMEPN--DVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       476 ~~~~~~-------~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      .+....       .|+..-.         ..-+.++.+..+|..|.++-+.-  .||  +..+..-...-...|++.+|+
T Consensus      1022 iklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aiee~d~~kae 1099 (1636)
T KOG3616|consen 1022 IKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAE 1099 (1636)
T ss_pred             hhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhccccccchhhhh
Confidence            653211       1110000         01123445555555555554432  233  223444444456678888887


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120          538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM  576 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  576 (634)
                      .++-++-  .|+      ...+.|...+.|.+|+++-+.
T Consensus      1100 ~fllran--kp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1100 GFLLRAN--KPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred             hheeecC--CCc------hHHHHHHHhccChHHHHHHHh
Confidence            7664432  232      123445567777777766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.07  E-value=1.8e-06  Score=87.11  Aligned_cols=430  Identities=13%  Similarity=0.026  Sum_probs=269.1

Q ss_pred             HHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 047120          107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI----  182 (634)
Q Consensus       107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----  182 (634)
                      +.+++...+.-|...|..+.-++...|+++.+-+.|++.....+. ....|..+-..|...|.-..|..+++.-..    
T Consensus       311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~  389 (799)
T KOG4162|consen  311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ  389 (799)
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence            344444445667778888888888899999999999998765433 566788888899999999999999887543    


Q ss_pred             C-ChhHHHHHHHHHH-hCCChHHHHHHHhhCccC------CCChhHHHHHHHHHHhc----------CCcHHHHHHHHhh
Q 047120          183 R-DSVSYNSMIDGYV-KSGNIESARELFDSMPIR------ERNLISWNSVLNGYAQL----------KSGLQFAWQIFEK  244 (634)
Q Consensus       183 ~-~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~------~p~~~~~~~ll~~~~~~----------~~~~~~a~~~~~~  244 (634)
                      | |...+-..-..|. +.+..++++++-.++...      ......|..+.-+|...          .....++.+.+++
T Consensus       390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~  469 (799)
T KOG4162|consen  390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE  469 (799)
T ss_pred             CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence            2 2334444444444 345666666665555442      22333344444444221          0014456666666


Q ss_pred             CCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC---Chhh
Q 047120          245 MPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR---DVVA  314 (634)
Q Consensus       245 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~  314 (634)
                      ..+   .|+....-+.--|+..++++.|++...+..+    .+...|..|.-.+...+++.+|+.+.+...+.   |...
T Consensus       470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l  549 (799)
T KOG4162|consen  470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL  549 (799)
T ss_pred             HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence            654   3333333344456778899999988887654    57889999999999999999999998876542   2221


Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH-c-CCCCchhHHHHHHHH
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-D-QFSLNGKHGVALIDM  392 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~  392 (634)
                      ...-+..-..-++.++++.....+..-..-.|..   .       ..++-....+....+.- . ...-.+.++..+...
T Consensus       550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~---q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l  619 (799)
T KOG4162|consen  550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGV---Q-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL  619 (799)
T ss_pred             chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH---h-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence            1122223334677777777776665321101110   0       01111111111111100 0 011112233322222


Q ss_pred             hHhcCC---HHHHHHHHHhccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 047120          393 YSKCGS---IENAIKVFEQIEDGS------VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHA  462 (634)
Q Consensus       393 ~~~~~~---~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~  462 (634)
                      ....+.   .+..+..+.....++      ...|......+...+..++|.-.+.+....  .|- ...|......+...
T Consensus       620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~  697 (799)
T KOG4162|consen  620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVK  697 (799)
T ss_pred             HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHH
Confidence            221111   111111111112222      124666777888899999999888887753  444 55777777888899


Q ss_pred             CCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 047120          463 GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARN--LIEDM-PMEPN-DVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       463 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      |++++|.+.|..+..   +.|+ +....++..++.+.|+..-|.+  ++.++ .+.|+ ...|..+...+.+.|+.+.|.
T Consensus       698 ~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             HhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence            999999999998875   3555 6678899999999998888887  88877 55665 779999999999999999999


Q ss_pred             HHHHHHhccCCCCCc
Q 047120          538 PVAKHLIGMDSSNSS  552 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~  552 (634)
                      +.|+-++++++.+|.
T Consensus       775 ecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  775 ECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHhhccCCCc
Confidence            999999999876654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=6.6e-08  Score=93.25  Aligned_cols=237  Identities=13%  Similarity=0.052  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc------hhHHHH
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN------GKHGVA  388 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~  388 (634)
                      ...+.+...+..++..|++-+......   .-+..-++....++...|.+...........+.|-..-      ...+..
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666633   33334444455556666666666655555554432110      011111


Q ss_pred             HHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHH
Q 047120          389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKE  467 (634)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~  467 (634)
                      +..+|.+.++++.++..|.+...+...     -....+....+++....+...-  +.|... -...-.+.+.+.|++..
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence            222344445555555555543311000     0111122233333333333222  222221 11122444555666666


Q ss_pred             HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      |+..|.++.+.  .+.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.--..++....+++.|.+.|+++++
T Consensus       377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666665552  1334555666666666666666666555444 33333 22343334444455566666666666666


Q ss_pred             cCCCCCchHHHHHHHHhc
Q 047120          546 MDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       546 ~~p~~~~~~~~l~~~~~~  563 (634)
                      .+|.+......+.++...
T Consensus       455 ~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  455 LDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             cCchhHHHHHHHHHHHHH
Confidence            666555555555555543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=2.7e-08  Score=99.18  Aligned_cols=192  Identities=17%  Similarity=0.138  Sum_probs=126.1

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHc-----CC-CC-chhHHHHHHHHhHhcCCHHHHHHHHHhccC----------CChh-
Q 047120          354 VLSAIAQLGHIDKGVAIHRYLEKD-----QF-SL-NGKHGVALIDMYSKCGSIENAIKVFEQIED----------GSVD-  415 (634)
Q Consensus       354 ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-  415 (634)
                      +...+...+++++|..+|+.+...     |- .| -..++..|..+|.+.|++++|...+++..+          +.+. 
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            444445555555555555554431     11 11 123445555566666666666555544321          1111 


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-ccc
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERL---SIEPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIH----K-LEP  483 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~  483 (634)
                      .++.++..+...+++++|..++++..+.   -..++    ..+++.+...|...|++++|.++++++....    + ..+
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            3566677778888888888887765432   12222    2488999999999999999999999887632    1 112


Q ss_pred             C-hhHHHHHHHHHhccCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          484 E-LQHYGCMVDILGRAGHIEAARNLIEDM--------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       484 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      . -..++.|...|.+.+++.+|.++|.+.        +..|+ ..+|..|...|...|+++.|+++.+++..
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2 334678888999999999999888776        23345 45899999999999999999999998873

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.05  E-value=9.4e-07  Score=89.52  Aligned_cols=256  Identities=13%  Similarity=0.078  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120          314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM  392 (634)
Q Consensus       314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  392 (634)
                      ++..+...|...|++++|++++++.+..   .|+ ...|..-...+-+.|++++|...++.+.... .-|..+-+-.+..
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy  271 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHH
Confidence            4456677888899999999999998854   566 4577777888899999999999999888765 3466777778888


Q ss_pred             hHhcCCHHHHHHHHHhccCCChh----------HH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC---CC--------
Q 047120          393 YSKCGSIENAIKVFEQIEDGSVD----------HW--NAMINGLAIHGLGELAFDLLMEMERL--SI---EP--------  447 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~~~~~~A~~~~~~m~~~--g~---~p--------  447 (634)
                      +.+.|++++|.+++.....++..          +|  .....+|.+.|++..|++.|..+.+.  .+   +-        
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~R  351 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLR  351 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence            89999999999998877754311          23  34567888999988888776665432  01   11        


Q ss_pred             --CHHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCcccCh-----------hHHHHHHHHH---hccCCHHHH
Q 047120          448 --DDITFTGLLNACAHAGL-------VKEGLLCFELMRRIHKLEPEL-----------QHYGCMVDIL---GRAGHIEAA  504 (634)
Q Consensus       448 --~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~---~~~g~~~~A  504 (634)
                        +..+|..+++..-+...       ...|.+++-.+..........           .--..+..-.   .+...-+++
T Consensus       352 K~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~  431 (517)
T PF12569_consen  352 KMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEA  431 (517)
T ss_pred             hccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHH
Confidence              22334444433222111       233444444443311000000           0000000000   111111111


Q ss_pred             HHHHH-----------hC----CCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120          505 RNLIE-----------DM----PMEPNDVIWRTLLSACRN-YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN  568 (634)
Q Consensus       505 ~~~~~-----------~~----~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  568 (634)
                      .+.-.           +.    +.+.|...   +...+.+ ..=+++|.++++-+.+..|++..+|..-..+|.+.|++-
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L  508 (517)
T PF12569_consen  432 EKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL  508 (517)
T ss_pred             HHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence            11110           00    11112111   1112223 345788999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 047120          569 DARRVRSM  576 (634)
Q Consensus       569 ~A~~~~~~  576 (634)
                      -|.+.+++
T Consensus       509 LaLqaL~k  516 (517)
T PF12569_consen  509 LALQALKK  516 (517)
T ss_pred             HHHHHHHh
Confidence            88887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.05  E-value=9e-07  Score=91.44  Aligned_cols=535  Identities=14%  Similarity=0.013  Sum_probs=291.8

Q ss_pred             HHHHHHHHhCCCCch-hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120           32 QIHARMITTGFIKNT-HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM  110 (634)
Q Consensus        32 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  110 (634)
                      .++..++...+.|+. .+|..|-+.|....+.   ..|.++|+..-+... .+...+-.+...|++..+++.|.++.-..
T Consensus       477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm---~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDM---KRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            444555555555555 5677777777766666   889999988765543 36788899999999999999998883222


Q ss_pred             HHCCCCCC---cchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-
Q 047120          111 LDNGVSVD---KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV-  186 (634)
Q Consensus       111 ~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-  186 (634)
                      -+  ..|-   ...|...--.+...++...+..-|+...+..+ -|...|..+..+|.++|++..|.++|.+...-++. 
T Consensus       553 ~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  553 AQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             hh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            22  1111   11122233345577888889888888887653 37778999999999999999999999887653332 


Q ss_pred             HHHHH--HHHHHhCCChHHHHHHHhhCccCCCCh--------hHHHHHHHHHHhcCC------cHHHHHHHHhhCCC---
Q 047120          187 SYNSM--IDGYVKSGNIESARELFDSMPIRERNL--------ISWNSVLNGYAQLKS------GLQFAWQIFEKMPE---  247 (634)
Q Consensus       187 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~p~~--------~~~~~ll~~~~~~~~------~~~~a~~~~~~~~~---  247 (634)
                      .|...  .-.-+..|.+.+|++.+........+.        .++-.....+.-.|-      -++.+++.|.-...   
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~  709 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL  709 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence            33322  223345788888888887766541111        111111111111111      12222222211111   


Q ss_pred             -CCchHHHHHHHHHH-----------------------hcCCh---H---HHHHHHhhCCC--CChhHHHHHHHHHHH--
Q 047120          248 -RDLISWNSMLHGCV-----------------------KCGKM---D---DAQALFDKMPK--RDVVSWANMIDGYAK--  293 (634)
Q Consensus       248 -~~~~~~~~l~~~~~-----------------------~~g~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~~~--  293 (634)
                       .+...|-.+-++|.                       ..+..   +   -+.+.+-.-.+  .+..+|..|+..|.+  
T Consensus       710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f  789 (1238)
T KOG1127|consen  710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF  789 (1238)
T ss_pred             hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence             11122222111111                       01100   0   00000000000  123444444444333  


Q ss_pred             --cC----ChHHHHHHhhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCCh
Q 047120          294 --LG----RVDIARRLFDEMP---KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI  364 (634)
Q Consensus       294 --~g----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~  364 (634)
                        +|    +...|...+....   ..+...|+.|.-. ...|++.-|...|-+-...  .+-...+|..+.-.+....++
T Consensus       790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~  866 (1238)
T KOG1127|consen  790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDF  866 (1238)
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccH
Confidence              11    2234555555443   2556667766554 4446666666666555422  223445677777677777788


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--------CCChhHHHHHHHHHHHcCChHHHHH-
Q 047120          365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--------DGSVDHWNAMINGLAIHGLGELAFD-  435 (634)
Q Consensus       365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~-  435 (634)
                      +.|...+...+... +.+...+-.........|+.-++..+|..-.        .++..-|-.........|+.++-+. 
T Consensus       867 E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t  945 (1238)
T KOG1127|consen  867 EHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT  945 (1238)
T ss_pred             HHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence            88888877766542 3334444444444455666666666665411        1233333333333344555443332 


Q ss_pred             ---------HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHH----HHHHHhccCCHH
Q 047120          436 ---------LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC----MVDILGRAGHIE  502 (634)
Q Consensus       436 ---------~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~  502 (634)
                               .+++... +.+-+...|...+....+.+.++.|.....+.......+-+...|+.    +.+.+...|.++
T Consensus       946 ~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen  946 ARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred             hhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence                     2333332 22223557777777777778787777776665443233444555553    344566678888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       503 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .|..-+.......|...-..-+.. .-.|+++++.+.|++++.+...+..   ....++......+..+.|...+-+...
T Consensus      1025 ~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1025 SAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             hHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            777776665444454444333333 3357888999999998887655444   334445555567777777777655543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.3e-06  Score=83.70  Aligned_cols=345  Identities=11%  Similarity=0.036  Sum_probs=186.4

Q ss_pred             HhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHH-HHHcCChHHHHHHhhhC
Q 047120          229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG-YAKLGRVDIARRLFDEM  307 (634)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~  307 (634)
                      .+.+. .++|...++-....|..+...-...+.+.|++++|..+|+.+.+.+...+...+.. +...+-.-.+. +.+..
T Consensus        90 Yrlnk-~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v  167 (652)
T KOG2376|consen   90 YRLNK-LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSV  167 (652)
T ss_pred             HHccc-HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhc
Confidence            34455 66666666644444444555556677788888888888888876555444433322 11111111221 34444


Q ss_pred             CCCChhhHHH---HHHHHHHcCCchHHHHHHHHHHhc-------CCCC-----CCHh-HHHHHHHHHHccCChHHHHHHH
Q 047120          308 PKRDVVACNA---MMGGYVRNGYSMKALEIFDNMQCE-------LYLH-----PDDA-SLVIVLSAIAQLGHIDKGVAIH  371 (634)
Q Consensus       308 ~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~-------~~~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~  371 (634)
                      ......+|..   ....+...|++.+|+++++....-       +...     -+.. .-..+.-.+...|+.++|..++
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            4333333433   345667789999999999888211       0111     1111 1223444567899999999999


Q ss_pred             HHHHHcCCCCch---hHHHHHHHHhHhcCCHH-HHHHHHHhccCC--------------ChhHH-HHHHHHHHHcCChHH
Q 047120          372 RYLEKDQFSLNG---KHGVALIDMYSKCGSIE-NAIKVFEQIEDG--------------SVDHW-NAMINGLAIHGLGEL  432 (634)
Q Consensus       372 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~--------------~~~~~-~~li~~~~~~~~~~~  432 (634)
                      ...++......+   ...|.|+.+-....-++ .++..++.....              ..... +.++..|.  +..+.
T Consensus       248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q  325 (652)
T KOG2376|consen  248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ  325 (652)
T ss_pred             HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence            999887633221   22233332221111111 222233222211              11111 22222222  23333


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHH-
Q 047120          433 AFDLLMEMERLSIEPDDITFTGLLNACAH--AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE-  509 (634)
Q Consensus       433 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-  509 (634)
                      +.++....-  +..|. ..+..++..+.+  ......+..++....+.+. .....+.-.++......|+++.|++++. 
T Consensus       326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            433333322  12333 234444443322  2356777777777765211 1124456677788899999999999998 


Q ss_pred             -------hC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC----CCC---CchHHHHHHHHhcCCCchHHHHHH
Q 047120          510 -------DM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSN---SSSYVLLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       510 -------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~  574 (634)
                             .. .+.-.+.+..++...+.+.++.+.|..++..++.--    +..   ...+..++..-.+.|+-++|..++
T Consensus       402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l  481 (652)
T KOG2376|consen  402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL  481 (652)
T ss_pred             HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence                   33 223334455566666788888888888887776431    222   224444555556779999999999


Q ss_pred             HHHHhCC
Q 047120          575 SMMKERN  581 (634)
Q Consensus       575 ~~~~~~~  581 (634)
                      +++.+..
T Consensus       482 eel~k~n  488 (652)
T KOG2376|consen  482 EELVKFN  488 (652)
T ss_pred             HHHHHhC
Confidence            9998743

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=7.3e-06  Score=83.10  Aligned_cols=342  Identities=15%  Similarity=0.155  Sum_probs=215.8

Q ss_pred             chhhhhHHHHH--hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHC-C-------
Q 047120           45 NTHLTTKLVAS--FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-G-------  114 (634)
Q Consensus        45 ~~~~~~~li~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------  114 (634)
                      |..+-..++..  |..-|+.   ..|.+-...++      +-..|..+.+.+.+.++.+-|.--+..|... |       
T Consensus       725 d~~TRkaml~FSfyvtiG~M---D~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a  795 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSM---DAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA  795 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccH---HHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence            45566677655  6777988   88877776663      5678999999999999999888777776531 1       


Q ss_pred             -CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHH
Q 047120          115 -VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDSVSYNSMI  192 (634)
Q Consensus       115 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li  192 (634)
                       -.|+ .+=..+.......|.+++|+.+|++-.+         |..|=..|-..|.+++|.++-+.-.. .=..||-...
T Consensus       796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA  865 (1416)
T KOG3617|consen  796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA  865 (1416)
T ss_pred             HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence             1222 2222233334578999999999988766         34455667788999999988765332 1234677777


Q ss_pred             HHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHH
Q 047120          193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL  272 (634)
Q Consensus       193 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (634)
                      .-+-..++.+.|++.|++...  |-...+..|..      . +.......+++.++  ..|.-....+-..|+.+.|+.+
T Consensus       866 ~~Lear~Di~~AleyyEK~~~--hafev~rmL~e------~-p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~  934 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGV--HAFEVFRMLKE------Y-PKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSF  934 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCC--hHHHHHHHHHh------C-hHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHH
Confidence            777788999999999987654  22222221111      1 44444444554444  3344445555678999999988


Q ss_pred             HhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHH
Q 047120          273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV  352 (634)
Q Consensus       273 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  352 (634)
                      |....     -|-.++...|-.|+.++|-++-++-  .|......+.+.|-..|++.+|+..|.+.+          +|.
T Consensus       935 Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq----------afs  997 (1416)
T KOG3617|consen  935 YSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ----------AFS  997 (1416)
T ss_pred             HHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHH
Confidence            88653     4666777777788888888776654  355566778888888899999998888775          233


Q ss_pred             HHHHHHHc-------------cC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc-------
Q 047120          353 IVLSAIAQ-------------LG--HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-------  410 (634)
Q Consensus       353 ~ll~~~~~-------------~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------  410 (634)
                      ..|+.|-.             ++  +.-.|..+|++.   |..     ....+..|-+.|.+.+|+++--+-.       
T Consensus       998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence            33333322             22  222333344322   211     1234456777777777766532211       


Q ss_pred             -------CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120          411 -------DGSVDHWNAMINGLAIHGLGELAFDLLMEME  441 (634)
Q Consensus       411 -------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~  441 (634)
                             ..|+...+.-..-+....++++|..++-..+
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                   2355566666666666777777776665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.98  E-value=2.9e-07  Score=79.27  Aligned_cols=191  Identities=12%  Similarity=0.019  Sum_probs=88.9

Q ss_pred             HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHH
Q 047120          357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELA  433 (634)
Q Consensus       357 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A  433 (634)
                      .|...|+...|..-++++++.. +.+..++..+...|.+.|+.+.|.+.|++..   +.+-.+.|....-+|..|++++|
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence            3344444444444444444332 2233334444444444444444444444433   12333444444445555555555


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120          434 FDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       434 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      ...|++....-.-|. ..+|..+.-+..+.|+.+.|...|++..+.   .|+ ......+.......|++..|..+++..
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~  199 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERY  199 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence            555555544322222 235555555555555555555555555442   122 333444555555555555555555544


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          512 --PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       512 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                        ...++..+....|..-...|+.+.+-++-..+.+..|.++
T Consensus       200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence              2234444444444444555555555555555555555443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.1e-05  Score=83.61  Aligned_cols=338  Identities=11%  Similarity=0.113  Sum_probs=246.6

Q ss_pred             CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhH-----HHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHH
Q 047120          183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS-----WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML  257 (634)
Q Consensus       183 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-----~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~  257 (634)
                      .|...-+.-+.++...+-+.+-+++++++.-. |+.++     -+.++-...+..  .....+..+++..-|..   .+.
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~-~S~Fse~~nLQnLLiLtAikad--~trVm~YI~rLdnyDa~---~ia 1055 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSENRNLQNLLILTAIKAD--RTRVMEYINRLDNYDAP---DIA 1055 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC-CcccccchhhhhhHHHHHhhcC--hHHHHHHHHHhccCCch---hHH
Confidence            46666677788999999999999999887654 33222     233333333322  55666666666552222   224


Q ss_pred             HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 047120          258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN  337 (634)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  337 (634)
                      ..+...+-+++|..+|++... +....+.|+.   ..++++.|.+.-++..+|.  .|..+..+-.+.|...+|++-|-+
T Consensus      1056 ~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHh
Confidence            566778889999999987532 3334444443   4577888888887776654  689999999999999999988754


Q ss_pred             HHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHH
Q 047120          338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW  417 (634)
Q Consensus       338 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  417 (634)
                      ..       |+..|..++..+.+.|.+++-..++..+++..-.|...  +.|+-+|++.+++.+.++++.   -|+....
T Consensus      1130 ad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i 1197 (1666)
T KOG0985|consen 1130 AD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANI 1197 (1666)
T ss_pred             cC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhH
Confidence            43       56789999999999999999999999888876555544  578899999999988777653   4666666


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR  497 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  497 (634)
                      ..+..-|...|.++.|.-+|...         ..|..|...+...|++..|...-+++       .+..+|..+..+|..
T Consensus      1198 ~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhc
Confidence            77788888888888887777643         35777777888888888887665443       356788888888887


Q ss_pred             cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120          498 AGHIEAARNLIEDMP--MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL  564 (634)
Q Consensus       498 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  564 (634)
                      .+.+.-|.-    .|  +-....-...|+..|...|-+++-+.+++.++.+..-.-..+..|+-+|.+-
T Consensus      1262 ~~EFrlAQi----CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLAQI----CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             hhhhhHHHh----cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence            776654432    23  2233455677889999999999999999999988888888899999988764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.1e-06  Score=85.13  Aligned_cols=432  Identities=14%  Similarity=0.055  Sum_probs=234.1

Q ss_pred             HHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHhcc
Q 047120           54 ASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF-SASLVLKACSRL  132 (634)
Q Consensus        54 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~  132 (634)
                      ++....|++   +.|...|.......+. |.+.|+.=..+|+..|++++|++=-.+-++  +.|+-. .|+....++.-.
T Consensus        10 naa~s~~d~---~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen   10 NAAFSSGDF---ETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HhhcccccH---HHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhc
Confidence            445677888   9999999987766654 889999999999999999999887777766  456544 788898899999


Q ss_pred             CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH-HHHHhhCCCCChhHHHHH-----HHHHHhCCChHHHHH
Q 047120          133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA-RQLFDKMGIRDSVSYNSM-----IDGYVKSGNIESARE  206 (634)
Q Consensus       133 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~  206 (634)
                      |++++|+..|..-++.. +.|...++.+..++    ..+.+ .+.|.     +...|..+     -+.+...-.+..-++
T Consensus        84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~  153 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILE  153 (539)
T ss_pred             ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence            99999999998887764 33556677777766    11111 11111     11222211     111111111111111


Q ss_pred             HHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHH-hcCChH----HHHHHHhhC-----
Q 047120          207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV-KCGKMD----DAQALFDKM-----  276 (634)
Q Consensus       207 ~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~----~A~~~~~~~-----  276 (634)
                      .++.-    |..      +..+..... +..+...+.....+   .+...-.... ....+.    ........+     
T Consensus       154 ~~~~~----p~~------l~~~l~d~r-~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~  219 (539)
T KOG0548|consen  154 IIQKN----PTS------LKLYLNDPR-LMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR  219 (539)
T ss_pred             HhhcC----cHh------hhcccccHH-HHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence            11111    111      000000000 11111111110000   0000000000 000000    000000000     


Q ss_pred             CCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCC-CCCH----h
Q 047120          277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL-HPDD----A  349 (634)
Q Consensus       277 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~----~  349 (634)
                      .+.-..-...+.++..+..+++.|.+-+....+  .+..-++....+|...|.+.+.+..-....+.++. ..+.    .
T Consensus       220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak  299 (539)
T KOG0548|consen  220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK  299 (539)
T ss_pred             HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence            001122345566777777778888877776654  33444566667777777777777666665544211 0111    1


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--CCCh-hHHHHHHHHHHH
Q 047120          350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--DGSV-DHWNAMINGLAI  426 (634)
Q Consensus       350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~  426 (634)
                      .+..+..++.+.++++.++..|.......-.|+         ...+....+++....+...  .|.. .-...-...+.+
T Consensus       300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk  370 (539)
T KOG0548|consen  300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK  370 (539)
T ss_pred             HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence            222233355566777888888877655433322         2233344555555544433  2211 112222566778


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHH
Q 047120          427 HGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAA  504 (634)
Q Consensus       427 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A  504 (634)
                      .|++..|+..|.++++..  |+ ...|....-+|.+.|.+..|++-.+...+.   .|+ ...|..=..++....++++|
T Consensus       371 ~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             ccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888763  54 568888888888888888888877777663   333 33344445555566678888


Q ss_pred             HHHHHhC-CCCCCHHHHHHHHHHHHh
Q 047120          505 RNLIEDM-PMEPNDVIWRTLLSACRN  529 (634)
Q Consensus       505 ~~~~~~~-~~~p~~~~~~~l~~~~~~  529 (634)
                      ++.|++. ...|+..-+..-+.-|..
T Consensus       446 leay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  446 LEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            8888876 556665555444444444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.95  E-value=1.1e-06  Score=89.02  Aligned_cols=282  Identities=13%  Similarity=0.070  Sum_probs=147.4

Q ss_pred             HHHHcCChHHHHHHhhhCCC--CCh-hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH----c--
Q 047120          290 GYAKLGRVDIARRLFDEMPK--RDV-VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA----Q--  360 (634)
Q Consensus       290 ~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~--  360 (634)
                      .+...|++++|++.++.-..  .|. .........+.+.|+.++|..+|+.+...   .|+...|...+..+.    .  
T Consensus        13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence            34455666666666555433  222 23344455566666666666666666633   455554444444333    1  


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH-HHHHHHhccCCCh-hHHHHHHHHHHHcCChHHHHHHHH
Q 047120          361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN-AIKVFEQIEDGSV-DHWNAMINGLAIHGLGELAFDLLM  438 (634)
Q Consensus       361 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~  438 (634)
                      ..+.+....+++.+...-  |.......+.-.+....++.. +..++......++ ..++.+-..|.......-...++.
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~  167 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE  167 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence            123445555555554432  111111111111111112221 2222233333333 234444444443333333333443


Q ss_pred             HHHHC----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCH
Q 047120          439 EMERL----S----------IEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHI  501 (634)
Q Consensus       439 ~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  501 (634)
                      .....    +          -.|+.  .++..+...|...|++++|+++.+.+...   .|+ ++.|..-++.|.+.|++
T Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence            33221    1          12333  24455666777888888888888887763   344 66777778888888888


Q ss_pred             HHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCC-CCCc------hH--HHHHHHHhcCCCchHH
Q 047120          502 EAARNLIEDM-PMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDS-SNSS------SY--VLLSNMFAGLGMWNDA  570 (634)
Q Consensus       502 ~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~------~~--~~l~~~~~~~g~~~~A  570 (634)
                      ++|.+.++.+ .+.+... .-+-.+..+.+.|++++|+..+..-.+.+. +...      .|  ...+.+|.+.|++..|
T Consensus       245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A  324 (517)
T PF12569_consen  245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA  324 (517)
T ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            8888888877 3444333 444455566788888888877766554442 1111      23  3456778888888888


Q ss_pred             HHHHHHHHh
Q 047120          571 RRVRSMMKE  579 (634)
Q Consensus       571 ~~~~~~~~~  579 (634)
                      ++.+..+.+
T Consensus       325 Lk~~~~v~k  333 (517)
T PF12569_consen  325 LKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHH
Confidence            877766644

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=5.3e-08  Score=94.72  Aligned_cols=215  Identities=13%  Similarity=0.108  Sum_probs=151.8

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 047120          360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDL  436 (634)
Q Consensus       360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~  436 (634)
                      +.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..++++.+-   +....-.|.-.|...|.-..|++.
T Consensus       297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence            4444555555555544432 334455555555555555555566655555432   444556666677777777778887


Q ss_pred             HHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHH
Q 047120          437 LMEMERLSIEPDDITFTGLL-----------NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR  505 (634)
Q Consensus       437 ~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  505 (634)
                      |+..+...  |.   |..+.           ..+..........++|-.+....+..+|..++..|.-.|.-.|++++|+
T Consensus       376 L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  376 LDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            77775532  11   00000           1122223344555566555554666688889999999999999999999


Q ss_pred             HHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          506 NLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       506 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +.|+.+ .++|+ ..+|+-|...+....+.++|+..|.+++++.|.-....+.|+-.|...|.+++|.+.|-.+...
T Consensus       451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            999988 66665 6699999999999999999999999999999999999999999999999999999999777554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.90  E-value=2.8e-08  Score=93.50  Aligned_cols=79  Identities=15%  Similarity=0.144  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc-hHHHHHHHH
Q 047120          500 HIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW-NDARRVRSM  576 (634)
Q Consensus       500 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~  576 (634)
                      .+.+|..+|+++  ...+++.+.+.+..++...|++++|+.+++++++.+|.++++...++-+....|+. +.+.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            344444444444  22334444444444445555555555555555555555555555555444444444 334444444


Q ss_pred             HH
Q 047120          577 MK  578 (634)
Q Consensus       577 ~~  578 (634)
                      +.
T Consensus       262 L~  263 (290)
T PF04733_consen  262 LK  263 (290)
T ss_dssp             CH
T ss_pred             HH
Confidence            43

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.89  E-value=4.2e-06  Score=83.43  Aligned_cols=294  Identities=11%  Similarity=-0.050  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhhCCC---CCh---hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh-HHHHHH
Q 047120          283 SWANMIDGYAKLGRVDIARRLFDEMPK---RDV---VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-SLVIVL  355 (634)
Q Consensus       283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll  355 (634)
                      .+..+...+...|+.+.+.+.+....+   .+.   .........+...|++++|.+.+++....   .|+.. .+.. .
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~-~   83 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD---YPRDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHH-h
Confidence            344444555555655555444443321   111   12222334556678888888888887754   44432 3331 1


Q ss_pred             HHHH----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcC
Q 047120          356 SAIA----QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHG  428 (634)
Q Consensus       356 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~  428 (634)
                      ..+.    ..+..+.+.+.+.. .....+........+...+...|++++|...+++..   +.+...+..+...+...|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            1222    23444444444433 111112223444556677888888999988888776   234567778888888899


Q ss_pred             ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH-H--HHHHHHhccCCHH
Q 047120          429 LGELAFDLLMEMERLSI-EPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-G--CMVDILGRAGHIE  502 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~  502 (634)
                      ++++|...+++...... .|+.  ..|..+...+...|++++|..+++.+.......+..... +  .++..+...|..+
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            99999999888776422 1222  245567778888999999999998875421111111111 1  2233334444322


Q ss_pred             HHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---------CCchHHHHHHHHhcCCC
Q 047120          503 AARNL---IEDM-PMEPN---DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS---------NSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       503 ~A~~~---~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~  566 (634)
                      .+.+.   .... +..|.   .........++...|+.+.|...++.+......         ........+.++...|+
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~  322 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN  322 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence            22222   1111 11111   122234555677889999999999887654321         23344566677889999


Q ss_pred             chHHHHHHHHHHhCC
Q 047120          567 WNDARRVRSMMKERN  581 (634)
Q Consensus       567 ~~~A~~~~~~~~~~~  581 (634)
                      +++|.+.+.......
T Consensus       323 ~~~A~~~L~~al~~a  337 (355)
T cd05804         323 YATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.88  E-value=2.5e-06  Score=77.71  Aligned_cols=293  Identities=16%  Similarity=0.150  Sum_probs=220.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH---HHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHH
Q 047120          283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM---GGYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAI  358 (634)
Q Consensus       283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~  358 (634)
                      -..-+...+...|++.+|+.-|....+-|+..|.++.   ..|...|+...|+.=+.+..   .++||-.. -..-...+
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhchhh
Confidence            3445777888899999999999999988887776654   47888999999999999998   46898543 22234456


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCc--hhHH------------HHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHH
Q 047120          359 AQLGHIDKGVAIHRYLEKDQFSLN--GKHG------------VALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMI  421 (634)
Q Consensus       359 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li  421 (634)
                      .+.|.++.|..=|+.+++.....+  ...+            ...+..+...|+...|+.....+.+-   |...|..-.
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra  196 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA  196 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            799999999999999987643211  1111            12234456678999999998888743   666778888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH----HHHH------
Q 047120          422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH----YGCM------  491 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l------  491 (634)
                      .+|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++..+   +.||...    |..|      
T Consensus       197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHH
Confidence            99999999999998888776642 33455666777788889999999988888876   3666433    2222      


Q ss_pred             ---HHHHhccCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          492 ---VDILGRAGHIEAARNLIEDM-PMEPND--V---IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       492 ---~~~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                         +....+.++|.++++-.+.. ...|..  +   .+..+-..+...|++.+|++...++++.+|++..++..-+.+|.
T Consensus       273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence               12234667777777777665 445552  2   33444455677999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHhCCC
Q 047120          563 GLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ....+++|+.-++++.+.+.
T Consensus       353 ~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             hhHHHHHHHHHHHHHHhcCc
Confidence            99999999999999987654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=4.1e-05  Score=77.92  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=114.7

Q ss_pred             CcchHHHHHH--HHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------------C
Q 047120          118 DKFSASLVLK--ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI------------R  183 (634)
Q Consensus       118 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~  183 (634)
                      |..|-..++.  .|...|+.+.|.+-.+.+.      +..+|..+.++|.+..++|-|.-.+-.|..            .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            3334444442  2445566666665554432      234566666666666666666555555432            0


Q ss_pred             ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCC-CchHHHHHHHHHHh
Q 047120          184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVK  262 (634)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~  262 (634)
                      +..+-.-..-...+.|.+++|..+|++-++       |..+=..|-..|. +++|.++-+.-..- =..||.....-+-.
T Consensus       799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~-w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGM-WSEAFEIAETKDRIHLRNTYYNYAKYLEA  870 (1416)
T ss_pred             CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhccc-HHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence            101111112222344555555555555443       1111112222222 55555444333221 11234444444444


Q ss_pred             cCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120          263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL  342 (634)
Q Consensus       263 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  342 (634)
                      .++.+.|++.|++...+--.++..|..      ++.....+.+++.+  ...|.-...-+-..|+.+.|+.+|.....  
T Consensus       871 r~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D--  940 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD--  940 (1416)
T ss_pred             hccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence            555555555555443222222222111      11122222222222  23333334444455666666666665542  


Q ss_pred             CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120          343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI  409 (634)
Q Consensus       343 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  409 (634)
                              |-.+++..+-.|+.++|-++-++      .-|......|...|...|++.+|..+|.+.
T Consensus       941 --------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  941 --------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             --------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                    33444455556666666655432      224455556666676677777776666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.82  E-value=2.2e-07  Score=87.53  Aligned_cols=226  Identities=16%  Similarity=0.170  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHh
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMY  393 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  393 (634)
                      ...+.+++...|+++.++   .++...  -.|.......+...+...++.+.+..-++........ .+..+......++
T Consensus        38 ~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~  112 (290)
T PF04733_consen   38 DFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL  112 (290)
T ss_dssp             HHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            334455666666655433   222221  1444444444443333333444443333332222222 2333333334556


Q ss_pred             HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHH
Q 047120          394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC----AHAGLVKEGL  469 (634)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~a~  469 (634)
                      ...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+.  ..| .+...+..++    ...+.+.+|.
T Consensus       113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~  187 (290)
T PF04733_consen  113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF  187 (290)
T ss_dssp             CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence            6678888888877765  45566667778888888999999999888864  334 3333344333    2334688999


Q ss_pred             HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHHhcc
Q 047120          470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENL-NVGEPVAKHLIGM  546 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  546 (634)
                      .+|+++..  ...++..+.+.+..++...|++++|.+++++. ...| ++.++..++......|+. +.+.+.+.++...
T Consensus       188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            99999876  34567778888888899999999999988876 3334 455777777777777777 6677888888888


Q ss_pred             CCCCCc
Q 047120          547 DSSNSS  552 (634)
Q Consensus       547 ~p~~~~  552 (634)
                      .|..|.
T Consensus       266 ~p~h~~  271 (290)
T PF04733_consen  266 NPNHPL  271 (290)
T ss_dssp             TTTSHH
T ss_pred             CCCChH
Confidence            887553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.81  E-value=3.6e-07  Score=84.96  Aligned_cols=179  Identities=12%  Similarity=0.010  Sum_probs=112.7

Q ss_pred             chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 047120          382 NGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SV---DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD----IT  451 (634)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~  451 (634)
                      ....+..++..+...|++++|...|+++..  | ++   ..+..+..++...|++++|...++++.+.  .|+.    .+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence            445556666667777777777777776652  2 21   34566667777777777777777777654  3321    13


Q ss_pred             HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH
Q 047120          452 FTGLLNACAHA--------GLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT  522 (634)
Q Consensus       452 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  522 (634)
                      +..+..++...        |++++|.+.++.+.+.   .|+. ..+..+.....    .....           ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~  171 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence            44444444433        5666677777666653   2332 12211111100    00000           001124


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNS---SSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +...+.+.|++++|...++++++..|.+|   ..+..++.++.+.|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55668899999999999999999987654   68999999999999999999999988654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=1.4e-05  Score=71.44  Aligned_cols=285  Identities=13%  Similarity=0.026  Sum_probs=139.5

Q ss_pred             ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHH-HHH
Q 047120           85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC-LIS  162 (634)
Q Consensus        85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~  162 (634)
                      .-+++++..+.+..++..|++++..-.++.  | +....+.+.-+|....++..|-.+++++-..-  |...-|.. -..
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ   86 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence            335555555566666666666665555432  3 33445555555556666666666666655432  22222211 123


Q ss_pred             HHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHH--HHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHH
Q 047120          163 LYVRCGYLEFARQLFDKMGIR-DSVSYNSMID--GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW  239 (634)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~  239 (634)
                      .+-+.+.+..|+.+...|... +...-..-+.  ..-..++                                  +..+.
T Consensus        87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~D----------------------------------l~g~r  132 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGD----------------------------------LPGSR  132 (459)
T ss_pred             HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccccc----------------------------------CcchH
Confidence            333445555555555544432 1111111111  1112333                                  44444


Q ss_pred             HHHhhCCC-CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCC-----
Q 047120          240 QIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK-----  309 (634)
Q Consensus       240 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----  309 (634)
                      .++++.+. .+..+.+...-...+.|+++.|.+-|+...+    .....|+..+. ..+.|+.+.|++...++.+     
T Consensus       133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~  211 (459)
T KOG4340|consen  133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ  211 (459)
T ss_pred             HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence            44444442 3333333333334455555555555555543    12233333332 2334555555555444432     


Q ss_pred             ------------CCh---------------hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccC
Q 047120          310 ------------RDV---------------VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG  362 (634)
Q Consensus       310 ------------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~  362 (634)
                                  +|+               ..+|.-...+.+.|+++.|.+.+..|..+..-..|++|...+.-. ...+
T Consensus       212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~  290 (459)
T KOG4340|consen  212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDA  290 (459)
T ss_pred             CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccC
Confidence                        111               123333444566777787877777776544445566666554322 1233


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120          363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE  410 (634)
Q Consensus       363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (634)
                      ++....+-+..+.+.+ +....++..++-.||+..-++.|-.++-+-.
T Consensus       291 ~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  291 RPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             CccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence            4444455555555543 3455777777778888777777777765543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.77  E-value=6e-07  Score=79.79  Aligned_cols=149  Identities=7%  Similarity=0.029  Sum_probs=110.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++...+.  -+.+...|..+...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence            3567777777776444332221    11        0122356677777777776652  24567788899999999999


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHH
Q 047120          501 IEAARNLIEDM-PMEPN-DVIWRTLLSAC-RNYEN--LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS  575 (634)
Q Consensus       501 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  575 (634)
                      +++|...+++. ...|+ ...+..+..++ ...|+  .++|.++++++++.+|.++.++..++..+.+.|++++|+..++
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999887 45554 66777777764 66676  5899999999999999999999999999999999999999999


Q ss_pred             HHHhCCCc
Q 047120          576 MMKERNLK  583 (634)
Q Consensus       576 ~~~~~~~~  583 (634)
                      ++.+...+
T Consensus       169 ~aL~l~~~  176 (198)
T PRK10370        169 KVLDLNSP  176 (198)
T ss_pred             HHHhhCCC
Confidence            99776553

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.74  E-value=4.4e-05  Score=86.43  Aligned_cols=322  Identities=13%  Similarity=0.033  Sum_probs=194.9

Q ss_pred             HHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCC----C----C--h--hhHHHHHHHH
Q 047120          259 GCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----R----D--V--VACNAMMGGY  322 (634)
Q Consensus       259 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~~  322 (634)
                      .....|+++.+..+++.+..    .+..........+...|+++++...+....+    .    +  .  .....+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            34456777777777766631    2222333444455667888887777765421    1    1  1  1122233455


Q ss_pred             HHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHh
Q 047120          323 VRNGYSMKALEIFDNMQCELYLHPDD----ASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QFS-LNGKHGVALIDMY  393 (634)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~  393 (634)
                      ...|++++|...+++...... ..+.    .....+...+...|+++.|...+......    |.. ........+...+
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        463 INDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            678888999888888764311 1111    23344555567788999888888777642    111 1123445566777


Q ss_pred             HhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHH
Q 047120          394 SKCGSIENAIKVFEQIED-------G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLS--IEPD--DITFTGLLNA  458 (634)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~  458 (634)
                      ...|++++|...+++...       +    ....+..+...+...|++++|...+++.....  ..+.  ...+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            888999988888776531       1    11234455566777799999988888765421  1122  2345556667


Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhHH-----HHHHHHHhccCCHHHHHHHHHhCCC-C-CCHH----HHHHHHHHH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQHY-----GCMVDILGRAGHIEAARNLIEDMPM-E-PNDV----IWRTLLSAC  527 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~  527 (634)
                      ....|++++|.+.++.+............+     ...+..+...|+.+.|.+.+..... . ....    .+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            778899999988888875421111111111     1122444568888998888876621 1 1111    134556667


Q ss_pred             HhcCChhHHHHHHHHHhccCCC------CCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          528 RNYENLNVGEPVAKHLIGMDSS------NSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ...|++++|...++++++....      ...++..++.++.+.|+.++|...+.++.+..
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8889999999999988775321      12356677888889999999999998887654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.70  E-value=1.8e-05  Score=82.28  Aligned_cols=454  Identities=13%  Similarity=0.047  Sum_probs=221.9

Q ss_pred             cchHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 047120          100 PKEALVMFCLMLDNGVSVDK-FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD  178 (634)
Q Consensus       100 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  178 (634)
                      ...|+..|-+..+.  .|+- ..|..+...|+...+..+|.+.|+.+.+.. ..+...+......|++..+++.|..+.-
T Consensus       474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            44444444444431  1221 245556666665556666666666666543 2244556666667777777777666643


Q ss_pred             hCCCCC-----hhHHHHHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCch-
Q 047120          179 KMGIRD-----SVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI-  251 (634)
Q Consensus       179 ~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-  251 (634)
                      ...+.+     ...|-...-.|.+.++...|+.-|+...+..| |...|..+..+|.+.|. ...|.++|.+....++. 
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHh
Confidence            332221     11233333445566666666666666665533 44566666677777666 67777777665553222 


Q ss_pred             HHHHH--HHHHHhcCChHHHHHHHhhCCC----------CChhHHHHHHHHHHHcCChHHHHHHhhhCCC----------
Q 047120          252 SWNSM--LHGCVKCGKMDDAQALFDKMPK----------RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----------  309 (634)
Q Consensus       252 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------  309 (634)
                      .|...  .-.-+..|.+.+|+..+..+..          .-..++-.+...+...|-..+|..+++...+          
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~  709 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL  709 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence            12211  1223455666666666665542          0111121111122222222222222221111          


Q ss_pred             -CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCCh---H---HHHHHHHHHHHcCCCCc
Q 047120          310 -RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI---D---KGVAIHRYLEKDQFSLN  382 (634)
Q Consensus       310 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~  382 (634)
                       .+...|-.+..          |..+|-+.. . . .|+......+..-....+..   +   .+.+.+-.  ...+..+
T Consensus       710 ~~~~~~Wi~asd----------ac~~f~q~e-~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~  774 (1238)
T KOG1127|consen  710 QSDRLQWIVASD----------ACYIFSQEE-P-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIH  774 (1238)
T ss_pred             hhhHHHHHHHhH----------HHHHHHHhc-c-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhc
Confidence             11112222211          111221111 0 1 22222222222212222211   1   01111110  1111222


Q ss_pred             hhHHHHHHHHhHh----cC----CHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 047120          383 GKHGVALIDMYSK----CG----SIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DI  450 (634)
Q Consensus       383 ~~~~~~l~~~~~~----~~----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~  450 (634)
                      +..|..|+.-|.+    ++    +...|+..+.+..   ..+...||.|.-. ...|++.-|...|-+-...  .|. ..
T Consensus       775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~  851 (1238)
T KOG1127|consen  775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHC  851 (1238)
T ss_pred             cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchh
Confidence            3344444333322    11    2234555555544   3466677776655 5556677777666665543  443 45


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCCHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPNDVIWRTL  523 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l  523 (634)
                      +|..+.-.+.+..+++.|...|...+..  .+.+...|..........|+.-++..+|..-       +--|+...|.+.
T Consensus       852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~  929 (1238)
T KOG1127|consen  852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA  929 (1238)
T ss_pred             heeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence            7777777788888888888888887652  1223444544444455677777777777642       223444444444


Q ss_pred             HHHHHhcCChhHHHHH----------HHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          524 LSACRNYENLNVGEPV----------AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      .......|+.++-+..          +++.+...|+...+|...+..+.+.+.+.+|.+...+.
T Consensus       930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444555555554443          33444556777777888888887777777777766665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.67  E-value=6.7e-05  Score=74.77  Aligned_cols=266  Identities=15%  Similarity=0.069  Sum_probs=171.8

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH---
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL-VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA---  388 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---  388 (634)
                      ..|..+...+...|+.+.+...+..........++.... ......+...|+++.|..+++.+.+.. +.+...+..   
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~   85 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG   85 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence            456667777778888888877777766442223333222 222334567899999999999988763 334444432   


Q ss_pred             HHHHhHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 047120          389 LIDMYSKCGSIENAIKVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGL  464 (634)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~  464 (634)
                      ........+..+.+.+.+......+   ......+...+...|++++|...+++..+.  .|+ ...+..+...+...|+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC
Confidence            2222223456666666666533322   234455667889999999999999999986  454 5678888899999999


Q ss_pred             HHHHHHHHHHhHHhcCcccCh--hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHHhcCChhH
Q 047120          465 VKEGLLCFELMRRIHKLEPEL--QHYGCMVDILGRAGHIEAARNLIEDM-PMEP--N-DVIW-R--TLLSACRNYENLNV  535 (634)
Q Consensus       465 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~g~~~~  535 (634)
                      +++|..+++.........|+.  ..|..+...+...|++++|..++++. ...|  . .... +  .++.-+...|....
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            999999999987632222332  34557888999999999999999986 2233  2 1111 1  23333445565555


Q ss_pred             HHHH---HHHHhccCCCC--CchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          536 GEPV---AKHLIGMDSSN--SSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       536 a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +.++   ........|..  +......+.++...|+.++|...++.+....
T Consensus       244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~  294 (355)
T cd05804         244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA  294 (355)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5444   22211111221  1222356777889999999999999986644

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.64  E-value=5.7e-07  Score=75.57  Aligned_cols=91  Identities=11%  Similarity=-0.054  Sum_probs=53.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120          490 CMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW  567 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  567 (634)
                      .+...+...|++++|...|+.+ ...| +...|..+..++...|++++|...|+++++++|.++..+..++.++...|++
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence            4455555666666666666554 3333 3445555555566666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHHhC
Q 047120          568 NDARRVRSMMKER  580 (634)
Q Consensus       568 ~~A~~~~~~~~~~  580 (634)
                      ++|+..+++..+.
T Consensus       109 ~eAi~~~~~Al~~  121 (144)
T PRK15359        109 GLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666655443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=4.5e-06  Score=89.44  Aligned_cols=200  Identities=16%  Similarity=0.108  Sum_probs=159.3

Q ss_pred             CCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047120          380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG--------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT  451 (634)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  451 (634)
                      +.+...|-..|......++.++|+++++++...        -...|.++++.-...|.-+...++|+++.+.  .-.-..
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            344566777888888888888888888877521        3347888888888888888888999998874  212346


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLLSAC  527 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~  527 (634)
                      |..|...|.+.+.+++|.++++.|.++.+  -....|...++.+.++.+-+.|..+++++ ..-|.   .......+..-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            78888899999999999999999998665  45667888899999999999999998876 32333   33445555556


Q ss_pred             HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      .+.|+.+++..+|+..+.-.|...+.|..++++-.+.|+.+.++.+|+++...++.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            78899999999999999999999999999999999999999999999999887764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=3.6e-06  Score=82.34  Aligned_cols=246  Identities=14%  Similarity=0.126  Sum_probs=153.1

Q ss_pred             HHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047120          321 GYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI  399 (634)
Q Consensus       321 ~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  399 (634)
                      -+.+.|+..+|.-.|+....+   .| +...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-
T Consensus       294 ~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            344555555555555555533   33 23455555555555555555555555555543 23445555555555555555


Q ss_pred             HHHHHHHHhccCCChh-HHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047120          400 ENAIKVFEQIEDGSVD-HWNAMI---------NGLAIHGLGELAFDLLMEM-ERLSIEPDDITFTGLLNACAHAGLVKEG  468 (634)
Q Consensus       400 ~~A~~~~~~~~~~~~~-~~~~li---------~~~~~~~~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a  468 (634)
                      ..|...+++.....+. .|....         ..+..........++|-++ ...+..+|+.....|.-.|--.|++++|
T Consensus       370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            5566555544211000 000000         0111111233344444444 4445446777777777778889999999


Q ss_pred             HHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          469 LLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       469 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      +..|+.+...   +| |..+||.|.-.++...+.++|+..|+++ .++|. +.+...|.-.|...|.+++|.+.|-.++.
T Consensus       450 iDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9999999763   45 4667999999999999999999999998 78888 45777888899999999999999999987


Q ss_pred             cCCC-----C-----CchHHHHHHHHhcCCCchHHHHH
Q 047120          546 MDSS-----N-----SSSYVLLSNMFAGLGMWNDARRV  573 (634)
Q Consensus       546 ~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~  573 (634)
                      +.+.     .     ..+|..|-.++.-.++.|-+.+.
T Consensus       527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            7543     1     13666666666666666644433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.60  E-value=1.6e-06  Score=72.80  Aligned_cols=122  Identities=10%  Similarity=0.010  Sum_probs=96.8

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 047120          435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM  513 (634)
Q Consensus       435 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  513 (634)
                      .++++..+.  .|+.  +..+...+...|++++|...|+.+...  -+.+...|..+..++.+.|++++|...|+++ ..
T Consensus        14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            445555543  4443  455677788899999999999988762  2346777888999999999999999999987 44


Q ss_pred             CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          514 EP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       514 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      .| +...+..+..++...|++++|+..++++++..|.++..+...+.+..
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            44 57788888889999999999999999999999999999988877764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=4e-06  Score=88.39  Aligned_cols=158  Identities=10%  Similarity=-0.014  Sum_probs=116.8

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM  491 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  491 (634)
                      ++..+..|.....+.|.+++|..+++...+.  .|+. .....+...+.+.+++++|+...+.....  -+.+......+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~  160 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE  160 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            5777888888888888888888888888874  7774 46777788888888888888888888762  23345667778


Q ss_pred             HHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchH
Q 047120          492 VDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND  569 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  569 (634)
                      ..++.+.|++++|.++|+++ ...|+ ..++..+..++...|+.++|...|+++++...+-...|+.+.      ++...
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~  234 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA  234 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence            88888888888888888887 22344 678888888888888888888888888888765555544433      23334


Q ss_pred             HHHHHHHHHhC
Q 047120          570 ARRVRSMMKER  580 (634)
Q Consensus       570 A~~~~~~~~~~  580 (634)
                      -..+++++.-.
T Consensus       235 ~~~~~~~~~~~  245 (694)
T PRK15179        235 DLAALRRLGVE  245 (694)
T ss_pred             HHHHHHHcCcc
Confidence            45556665433

>PLN02789 farnesyltranstransferase

Probab=98.53  E-value=5.1e-05  Score=72.64  Aligned_cols=176  Identities=13%  Similarity=0.099  Sum_probs=106.1

Q ss_pred             HHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120          399 IENAIKVFEQIED---GSVDHWNAMINGLAIHGLG--ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       399 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      +++++..++++.+   .+..+|+.-...+.+.|+.  ++++.+++++.+.  .|. ..+|.....++...|+++++++.+
T Consensus        88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~  165 (320)
T PLN02789         88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC  165 (320)
T ss_pred             HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4455555544432   2333444433334444432  5566677666654  343 456776666777777777777777


Q ss_pred             HHhHHhcCcccChhHHHHHHHHHhcc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChhHHHHH
Q 047120          473 ELMRRIHKLEPELQHYGCMVDILGRA---GHI----EAARNLIEDM-PMEP-NDVIWRTLLSACRNY----ENLNVGEPV  539 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~  539 (634)
                      +.+.+. . ..+...|+.....+.+.   |..    ++++++..++ ...| |...|+.+...+...    +...+|...
T Consensus       166 ~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~  243 (320)
T PLN02789        166 HQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV  243 (320)
T ss_pred             HHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence            777662 1 23344555544444333   222    4566666444 3344 466787777777663    445678888


Q ss_pred             HHHHhccCCCCCchHHHHHHHHhcCC------------------CchHHHHHHHHHH
Q 047120          540 AKHLIGMDSSNSSSYVLLSNMFAGLG------------------MWNDARRVRSMMK  578 (634)
Q Consensus       540 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~  578 (634)
                      +.+++..+|.++.+...|+++|....                  ..++|.++++.+.
T Consensus       244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            88888888888889999999998632                  2356777777773

>PF12854 PPR_1: PPR repeat

Probab=98.53  E-value=1.5e-07  Score=55.97  Aligned_cols=33  Identities=33%  Similarity=0.483  Sum_probs=23.0

Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 047120          149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG  181 (634)
Q Consensus       149 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  181 (634)
                      |+.||..+|++||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            566777777777777777777777777776663

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.52  E-value=5.6e-06  Score=73.19  Aligned_cols=124  Identities=12%  Similarity=0.037  Sum_probs=59.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYEN  532 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~  532 (634)
                      +-..+...|+-+....+......  ....|......++....+.|++..|...+++.  .-++|...|+.+..+|.+.|+
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            33344444444444444443322  11222333334455555555555555555554  233444455555555555555


Q ss_pred             hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +++|...|.+++++.|.+|..+++++..|.-.|+.++|..++......
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            555555555555555555555555555555555555555555554443

>PF12854 PPR_1: PPR repeat

Probab=98.52  E-value=7.6e-08  Score=57.20  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=17.7

Q ss_pred             CCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120           79 REKKDPFLWNAIIKTYSHGLDPKEALVMFCLM  110 (634)
Q Consensus        79 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  110 (634)
                      |..||..+||+||.+|++.|+.++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34555555555555555555555555555555

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.52  E-value=2.4e-05  Score=84.17  Aligned_cols=222  Identities=14%  Similarity=0.153  Sum_probs=171.4

Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC--ChhhHHHH
Q 047120          249 DLISWNSMLHGCVKCGKMDDAQALFDKMPK--------RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR--DVVACNAM  318 (634)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l  318 (634)
                      +...|-..|....+.++.++|.++.++.++        .-...|.++++.-..-|.-+...++|++..+-  ....|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            345677778888888889999888888764        22457888888877888888889999988862  34578889


Q ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcC
Q 047120          319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMYSKCG  397 (634)
Q Consensus       319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  397 (634)
                      ...|.+.+.+++|.++|+.|.+..+  -....|...+..+.+.++-+.|..++.++.+.-.+ -......-.+.+-.+.|
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            9999999999999999999998744  45567888888888988889999999988875322 23455666777888999


Q ss_pred             CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHH
Q 047120          398 SIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI--TFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       398 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      +.+.+..+|+....   +-...|+..|..-.++|+.+.+..+|++....++.|-..  .|...+..--..|+-+.+..+=
T Consensus      1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred             CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence            99999999988763   356689999999999999999999999999988877643  5666665555555554444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.51  E-value=1.2e-05  Score=71.25  Aligned_cols=154  Identities=14%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR  497 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  497 (634)
                      ..+...+...|+-+....+....... ..-|.......+....+.|++..|...+.++..  .-++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            44455556666666666666554432 112233444466666677777777777776664  335566677777777777


Q ss_pred             cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120          498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  574 (634)
                      .|+.+.|..-|.+. .+.|+ +..++.+...+.-.|+++.|+.++..+....+.++..-..|+.+....|++++|..+.
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            77777777666665 33333 4456666666666677777777777776666666677777777777777777776655

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=6.8e-06  Score=82.60  Aligned_cols=216  Identities=15%  Similarity=0.059  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHc
Q 047120          350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--DGSVDHWNAMINGLAIH  427 (634)
Q Consensus       350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~  427 (634)
                      .-..+...+...|-...|..+++.+.         .+..++.+|...|+..+|..+..+-.  ++++..|-.+.+.....
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence            33445556667777777777776543         45567778888888777777766544  45666777777766666


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHH
Q 047120          428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL  507 (634)
Q Consensus       428 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  507 (634)
                      .-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+..  +....+|-.+.-+..+.++++.|.+.
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHH
Confidence            6677777777654332       11122222334688888888888776633  23456788888888899999999999


Q ss_pred             HHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          508 IEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       508 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      |... ...|| ...|+.+-.+|.+.|+-.+|...++++++-+-.+...|-+...+....|.+++|++.+.++.+....
T Consensus       542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            9876 66777 5589999999999999999999999999999888889999999999999999999999998765443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.47  E-value=1.4e-05  Score=74.25  Aligned_cols=181  Identities=14%  Similarity=0.045  Sum_probs=126.9

Q ss_pred             CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-Chh---HHH
Q 047120          347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-L-NGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVD---HWN  418 (634)
Q Consensus       347 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~~  418 (634)
                      ....+......+...|+++.|...++.+.+.... + ....+..+..++...|++++|...++++.+  | +..   .+.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            3456777888889999999999999998875421 1 124667888999999999999999999863  2 222   456


Q ss_pred             HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHH
Q 047120          419 AMINGLAIH--------GLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG  489 (634)
Q Consensus       419 ~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  489 (634)
                      .+..++...        |++++|.+.++++...  .|+.. .+..+.....    .      .....         ....
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~~  170 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKEL  170 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHHH
Confidence            666666654        7789999999999875  55543 2222111100    0      00000         1122


Q ss_pred             HHHHHHhccCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          490 CMVDILGRAGHIEAARNLIEDM-PM---EP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      .+...|.+.|++++|+..+++. ..   .| ....+..++.++.+.|++++|...++.+....|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5667788999999999998887 22   23 246888889999999999999998888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.47  E-value=0.00045  Score=78.31  Aligned_cols=324  Identities=10%  Similarity=0.026  Sum_probs=204.9

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCChhH--HHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHHcCCchH
Q 047120          257 LHGCVKCGKMDDAQALFDKMPKRDVVS--WANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMK  330 (634)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~  330 (634)
                      ...+...|++.+|..............  ...........|+.+.+...++.+..    .+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            445666777777776666654332211  12223345567888888888887742    233333445556678899999


Q ss_pred             HHHHHHHHHhcCCC-----CCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHhHhcCCH
Q 047120          331 ALEIFDNMQCELYL-----HPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG----KHGVALIDMYSKCGSI  399 (634)
Q Consensus       331 A~~~~~~m~~~~~~-----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~  399 (634)
                      +..++........-     .|...  ....+...+...|+++.|...++...+.....+.    .....+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            99999887543111     11111  1222334456789999999999988763211121    2345566777889999


Q ss_pred             HHHHHHHHhccC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccC
Q 047120          400 ENAIKVFEQIED-------GS--VDHWNAMINGLAIHGLGELAFDLLMEMERL----SIE--P-DDITFTGLLNACAHAG  463 (634)
Q Consensus       400 ~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g  463 (634)
                      ++|...+++...       +.  ...+..+...+...|++++|...+++....    +..  | ....+..+...+...|
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence            999999887652       11  224556677888999999999998886542    211  1 1234455566677789


Q ss_pred             CHHHHHHHHHHhHHhcC-ccc--ChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcC
Q 047120          464 LVKEGLLCFELMRRIHK-LEP--ELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWR-----TLLSACRNYE  531 (634)
Q Consensus       464 ~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~~g  531 (634)
                      ++++|...+........ ..+  ....+..+...+...|++++|.+.++++    ........+.     ..+..+...|
T Consensus       588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  667 (903)
T PRK04841        588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG  667 (903)
T ss_pred             CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence            99999999988755211 112  2334556777888999999999988776    1111111111     1123345589


Q ss_pred             ChhHHHHHHHHHhccCCCCCch----HHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSS----YVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +.+.|..++.......+..+..    +..++.++...|++++|...+++....
T Consensus       668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999987766533322222    456788899999999999999988653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=2.7e-05  Score=75.00  Aligned_cols=139  Identities=14%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhcc
Q 047120          421 INGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRA  498 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  498 (634)
                      ...+...|++++|+..++.+...  .|+.. ........+.+.++..+|.+.++.+...   .|+ ....-.+..+|.+.
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~  387 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence            33344445555555555555443  33322 2223333445555555555555555432   233 23333444555555


Q ss_pred             CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120          499 GHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM  576 (634)
Q Consensus       499 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  576 (634)
                      |++.+|+.++++.  ..+.|+..|..|..+|...|+..++....                 +..|...|++++|+..+.+
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence            5555555555444  22333445555555555555544443222                 2334445666666666666


Q ss_pred             HHhCC
Q 047120          577 MKERN  581 (634)
Q Consensus       577 ~~~~~  581 (634)
                      ..+..
T Consensus       451 A~~~~  455 (484)
T COG4783         451 ASQQV  455 (484)
T ss_pred             HHHhc
Confidence            65543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.46  E-value=2.2e-05  Score=69.84  Aligned_cols=156  Identities=13%  Similarity=0.167  Sum_probs=114.7

Q ss_pred             HHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047120          390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL  469 (634)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  469 (634)
                      +-.|...|+++.+....+.+..+.        ..+...++.++++..+++..+.. ..+...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            445777777776654443322211        01122566778888888877652 335678999999999999999999


Q ss_pred             HHHHHhHHhcCcccChhHHHHHHHHH-hccCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120          470 LCFELMRRIHKLEPELQHYGCMVDIL-GRAGH--IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  544 (634)
                      ..|+.+.+..  +.+...+..+..++ .+.|+  .++|.+++++. ...|+ ...+..+...+...|++++|+..+++++
T Consensus        94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999998732  33577788888864 67777  59999999998 55554 6688888888999999999999999999


Q ss_pred             ccCCCCCchHHH
Q 047120          545 GMDSSNSSSYVL  556 (634)
Q Consensus       545 ~~~p~~~~~~~~  556 (634)
                      +..|++.+-+..
T Consensus       172 ~l~~~~~~r~~~  183 (198)
T PRK10370        172 DLNSPRVNRTQL  183 (198)
T ss_pred             hhCCCCccHHHH
Confidence            999887665443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=3.5e-05  Score=77.68  Aligned_cols=190  Identities=14%  Similarity=0.136  Sum_probs=161.0

Q ss_pred             CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120          378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN  457 (634)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  457 (634)
                      +++|--..-..+...+...|-...|..+|+++     ..|...|.+|...|+..+|..+..+-.++  +||+..|..++.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            34555666777889999999999999999975     46888899999999999999999988873  789999999999


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~  535 (634)
                      ......-+++|.++.+.....        .-..+.....+.++++++.+.|+.- .+.|- ..+|..+..+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            888888899999988876542        1222334445689999999999875 55554 5689989988899999999


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      |.+.|...+.++|++...|+++.-+|.+.|+..+|...+++..+.+.
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999998874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.41  E-value=4.4e-05  Score=80.74  Aligned_cols=143  Identities=13%  Similarity=0.099  Sum_probs=118.9

Q ss_pred             CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 047120          378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFT  453 (634)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~  453 (634)
                      .++.++..+..|.......|++++|..+++.+.+  | +......++..+.+.+++++|+..+++....  .|+. ....
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence            4567788999999999999999999999998873  3 4557888899999999999999999999985  6764 4677


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047120          454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLL  524 (634)
Q Consensus       454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~  524 (634)
                      .+..++.+.|++++|..+|+++..  ..+-+...+..+..++...|+.++|...|++.  ...|....|+.++
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            788889999999999999999986  22334778889999999999999999999988  3445566666555

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.40  E-value=2.4e-06  Score=70.24  Aligned_cols=96  Identities=8%  Similarity=-0.032  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ....-.+...+...|++++|.++|+-. ...|. ..-|..|...|...|++++|+..|.++..++|++|..+..++.++.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            344455677788999999999999987 45555 5678889989999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHhC
Q 047120          563 GLGMWNDARRVRSMMKER  580 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~~~~  580 (634)
                      ..|+.+.|.+.|+.....
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999988655

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.38  E-value=0.0031  Score=61.90  Aligned_cols=434  Identities=13%  Similarity=0.093  Sum_probs=238.6

Q ss_pred             CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHH
Q 047120          116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMID  193 (634)
Q Consensus       116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~  193 (634)
                      +-|..+|..||+-+..+ .++++++.++++... ++..+..|..-|..-.+..+++..+++|.+...  -+...|...+.
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~   94 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS   94 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence            34667888888877665 788888888888764 344566777778888888888888888877543  35666665554


Q ss_pred             HHHh-CCChHHHH----HHHhhCccC-CCC---hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcC
Q 047120          194 GYVK-SGNIESAR----ELFDSMPIR-ERN---LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG  264 (634)
Q Consensus       194 ~~~~-~g~~~~A~----~~~~~m~~~-~p~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (634)
                      --.+ .|+...+.    +.|+-.... ..|   ...|+..+.-+-.              ...         +..|....
T Consensus        95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~--------------vea---------~gk~ee~Q  151 (656)
T KOG1914|consen   95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEG--------------VEA---------VGKYEENQ  151 (656)
T ss_pred             HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHc--------------ccc---------cccHHHHH
Confidence            3222 22222211    222221111 111   1112222111100              000         11123334


Q ss_pred             ChHHHHHHHhhCCCC----------ChhHHHHHHHH-------HHHcCChHHHHHHhhhCCC---------C-----C--
Q 047120          265 KMDDAQALFDKMPKR----------DVVSWANMIDG-------YAKLGRVDIARRLFDEMPK---------R-----D--  311 (634)
Q Consensus       265 ~~~~A~~~~~~~~~~----------~~~~~~~l~~~-------~~~~g~~~~A~~~~~~~~~---------~-----~--  311 (634)
                      +++...++|+++...          |-..|..=++.       --+...+..|.++++++..         +     .  
T Consensus       152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~  231 (656)
T KOG1914|consen  152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK  231 (656)
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence            455555555555431          11111111111       0112234445555544431         0     0  


Q ss_pred             -----hhhHHHHHHHHHHcCC--------chHHHHHHHHHHhcCCCCCCHhHHH-HH----HHHHHccCC-------hHH
Q 047120          312 -----VVACNAMMGGYVRNGY--------SMKALEIFDNMQCELYLHPDDASLV-IV----LSAIAQLGH-------IDK  366 (634)
Q Consensus       312 -----~~~~~~l~~~~~~~g~--------~~~A~~~~~~m~~~~~~~p~~~~~~-~l----l~~~~~~~~-------~~~  366 (634)
                           +..|-.+|.-=..++-        .....-.+++....-+..|+.+... ..    -+.+...|+       .++
T Consensus       232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e  311 (656)
T KOG1914|consen  232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE  311 (656)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence                 1123333322111110        0122333333333334555543211 11    112233333       345


Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHhHhc---CCHHHHHHHHHhccC---C-ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047120          367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKC---GSIENAIKVFEQIED---G-SVDHWNAMINGLAIHGLGELAFDLLME  439 (634)
Q Consensus       367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~  439 (634)
                      +..+++..++.-...+..+|..+.+.--..   +..+.....++++..   . -..+|-.++..-.+..-...|..+|.+
T Consensus       312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k  391 (656)
T KOG1914|consen  312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK  391 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence            556666555443333444444443322111   124555556655542   1 223677777877888889999999999


Q ss_pred             HHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCC
Q 047120          440 MERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEP  515 (634)
Q Consensus       440 m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p  515 (634)
                      ..+.+..+ ....+..++.-+| .++.+-|.++|+.-.+++|-  +...-...++.+...++-..|..+|++.   .+.|
T Consensus       392 aR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~  468 (656)
T KOG1914|consen  392 AREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA  468 (656)
T ss_pred             HhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence            99988877 5667777777666 56888999999987775543  3344557788889999999999999988   2455


Q ss_pred             C--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----CchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          516 N--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN----SSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       516 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      |  ...|..++.--..-|++..+.++-++.....|.+    ...-..+.+-|.-.+.+..-..-++.|
T Consensus       469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            5  4689999999999999999999999988777722    124445566676666665444444433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=8.3e-05  Score=65.86  Aligned_cols=115  Identities=11%  Similarity=0.071  Sum_probs=72.3

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh----ccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG----RAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYEN  532 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~  532 (634)
                      +.+..+.+-|.+.++.|..    -.+..+.+.|..++.    -.+.+.+|.-+|+++  +.+|+..+.+....++...|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence            3445556666666666654    123334444444333    344567777777777  356777777777777777778


Q ss_pred             hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH-HHHHHHH
Q 047120          533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA-RRVRSMM  577 (634)
Q Consensus       533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~  577 (634)
                      +++|+.+++.++..++.+|.+...++..-...|.-.++ .+.+.++
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            88888888777777777777777777766666666443 3334444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.37  E-value=6.5e-05  Score=80.23  Aligned_cols=33  Identities=9%  Similarity=0.096  Sum_probs=18.3

Q ss_pred             CEEEEEEeCCCCCcchhHHHHHHHhcccCccccc
Q 047120          595 GVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVAT  628 (634)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (634)
                      +.+..|.. ...|.-.-++.-..-....+||++.
T Consensus       329 ~i~IdF~~-k~gh~ms~~~A~~sL~pL~~dHi~v  361 (906)
T PRK14720        329 GIFVDFVS-KRGHKLSIQMAITALKPLKRDHIWV  361 (906)
T ss_pred             ceEEEecc-CCCCcCCHHHHHHhcCcCChhheeh
Confidence            34455543 3446555555555555678888754

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00038  Score=61.80  Aligned_cols=174  Identities=17%  Similarity=0.122  Sum_probs=105.8

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047120          371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI  450 (634)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  450 (634)
                      .+.+.......+......-...|...|++++|++.......-...  -.=+..+.+..+.+-|.+.+++|.+-   -+..
T Consensus        96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~  170 (299)
T KOG3081|consen   96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAA--ALNVQILLKMHRFDLAEKELKKMQQI---DEDA  170 (299)
T ss_pred             HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence            334444333333333333445567777777777777763322222  22234455666777888888888753   2455


Q ss_pred             HHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047120          451 TFTGLLNACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLL  524 (634)
Q Consensus       451 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~  524 (634)
                      |.+-|..++.+    .+.+.+|.-+|+++..  ..+|+..+.+....++...|++++|..++++.  ....++.+...++
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            66666655543    4567788888888865  35677777777777888888888888888877  3334455555555


Q ss_pred             HHHHhcC-ChhHHHHHHHHHhccCCCCC
Q 047120          525 SACRNYE-NLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       525 ~~~~~~g-~~~~a~~~~~~~~~~~p~~~  551 (634)
                      -.-...| +.+...+.+.++....|..+
T Consensus       249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  249 VLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            4433334 44555666677766666654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.34  E-value=5.1e-06  Score=69.51  Aligned_cols=96  Identities=16%  Similarity=0.236  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      .....+...+...|++++|.+.++.+ ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            44556666777777777777777776 3233 456677777777777888888888888888888888888888888888


Q ss_pred             CCCchHHHHHHHHHHhCC
Q 047120          564 LGMWNDARRVRSMMKERN  581 (634)
Q Consensus       564 ~g~~~~A~~~~~~~~~~~  581 (634)
                      .|++++|.+.+++..+..
T Consensus        98 ~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        98 LGEPESALKALDLAIEIC  115 (135)
T ss_pred             cCCHHHHHHHHHHHHHhc
Confidence            888888888887776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=98.34  E-value=0.00048  Score=66.04  Aligned_cols=235  Identities=10%  Similarity=0.048  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALIDM  392 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  392 (634)
                      +..+-..+...+..++|+.+..++..   +.|+.. .|......+...| ++++++..++.+.+.. +-+..+|+....+
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            44444555667778888888888873   456543 4444444555555 5678888888777654 3344455555444


Q ss_pred             hHhcCCH--HHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC
Q 047120          393 YSKCGSI--ENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA---GL  464 (634)
Q Consensus       393 ~~~~~~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~  464 (634)
                      +.+.|+.  ++++.+++++.   ..+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+.   |.
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence            5555553  56777777665   346667888888888888899999999999886432 344565555444433   22


Q ss_pred             ----HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---
Q 047120          465 ----VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA----GHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYE---  531 (634)
Q Consensus       465 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---  531 (634)
                          .++.+.+...+...  .+-+...|+.+...+...    ++..+|.+.+.+. ...| +......|+..|+...   
T Consensus       195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~  272 (320)
T PLN02789        195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT  272 (320)
T ss_pred             ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence                24566666566552  234566788888777763    4456688887776 3344 4667777888776532   


Q ss_pred             ---------------ChhHHHHHHHHHhccCCCCCchHHH
Q 047120          532 ---------------NLNVGEPVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       532 ---------------~~~~a~~~~~~~~~~~p~~~~~~~~  556 (634)
                                     ..++|.++++.+-+-+|.....|..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~  312 (320)
T PLN02789        273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW  312 (320)
T ss_pred             hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence                           2356777777775555655544443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00014  Score=63.92  Aligned_cols=165  Identities=15%  Similarity=0.113  Sum_probs=107.8

Q ss_pred             HHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120          389 LIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV  465 (634)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  465 (634)
                      ++-+...+|+.+.|...++.+...   +..+-..-..-+-..|.+++|+++++.+.+.. +.|..++..-+...-..|+-
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~  136 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN  136 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence            334444455555555555544321   11111111223445678888888888888763 23455776666666667777


Q ss_pred             HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---cCChhHHHHHH
Q 047120          466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRN---YENLNVGEPVA  540 (634)
Q Consensus       466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~---~g~~~~a~~~~  540 (634)
                      -+|++-+....+  .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|- +..+..+...+.-   ..+++.+.++|
T Consensus       137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            788887777766  35678889999999999999999999999988 34454 4555666665433   33778889999


Q ss_pred             HHHhccCCCCCchHHH
Q 047120          541 KHLIGMDSSNSSSYVL  556 (634)
Q Consensus       541 ~~~~~~~p~~~~~~~~  556 (634)
                      .+++++.|.+...+..
T Consensus       215 ~~alkl~~~~~ral~G  230 (289)
T KOG3060|consen  215 ERALKLNPKNLRALFG  230 (289)
T ss_pred             HHHHHhChHhHHHHHH
Confidence            9999998855544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.28  E-value=0.00016  Score=69.95  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a  536 (634)
                      +...|++++|+..++.+.+.  .+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            44567777777777776652  3344555666677777777777777777776 45566 55666677777777777777


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ++.++.....+|.+|..|..|+.+|..+|+..++....-++..
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777776655543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.27  E-value=0.00029  Score=75.49  Aligned_cols=80  Identities=18%  Similarity=0.074  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCC
Q 047120          350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL  429 (634)
Q Consensus       350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~  429 (634)
                      .+..+..+|.+.|+.+++..+++++++.. +.|+.+.+.+...|... ++++|++++.+.           +..|...++
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq  184 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ  184 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence            44444445555555555555555555544 33444555555555544 555555544332           122344444


Q ss_pred             hHHHHHHHHHHHH
Q 047120          430 GELAFDLLMEMER  442 (634)
Q Consensus       430 ~~~A~~~~~~m~~  442 (634)
                      +..+.++|.++..
T Consensus       185 ~~~~~e~W~k~~~  197 (906)
T PRK14720        185 YVGIEEIWSKLVH  197 (906)
T ss_pred             chHHHHHHHHHHh
Confidence            5555555555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.24  E-value=2e-05  Score=76.92  Aligned_cols=123  Identities=13%  Similarity=0.123  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACR  528 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~  528 (634)
                      ....++..+...++++.|+.+++++.+.   .|+  ....++..+...++-.+|.+++.+. . .+.+...+..-...|.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3445566666778889999999888763   344  4455788888888888899888887 3 3335666666677788


Q ss_pred             hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      +.++++.|..+.+++++..|.+..+|..|+.+|.+.|++++|+-.++.+.
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999885

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.24  E-value=0.0065  Score=59.71  Aligned_cols=173  Identities=15%  Similarity=0.066  Sum_probs=117.7

Q ss_pred             chHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHhHhcCCHHHHHHHH
Q 047120          328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL-NGKHGVALIDMYSKCGSIENAIKVF  406 (634)
Q Consensus       328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~  406 (634)
                      .+.....++++.....+.|+ .+|...++...+..-++.|..+|.++.+.+..+ ++.+.++++..||. ++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            55666677777654344444 356677777788888888999999888877666 77888888887774 6778888888


Q ss_pred             HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-
Q 047120          407 EQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHK-  480 (634)
Q Consensus       407 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-  480 (634)
                      +.-.+   .++.--...+.-+...++-..+..+|++....++.|+.  ..|..++.--..-|++..+.++-++...... 
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~  504 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA  504 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence            76542   23444456677777788888888888888887666663  4788888888888888888877776654322 


Q ss_pred             -cccChhHHHHHHHHHhccCCHH
Q 047120          481 -LEPELQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       481 -~~~~~~~~~~l~~~~~~~g~~~  502 (634)
                       ..+....-..+++-|.-.+.+.
T Consensus       505 ~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  505 DQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             hhcCCCChHHHHHHHHhhccccc
Confidence             2222223334455555444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00015  Score=63.75  Aligned_cols=163  Identities=13%  Similarity=0.076  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI  494 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (634)
                      .|..++-+....|+.+.|...++++... + |.+. .-..-..-+...|++++|.++++....+  -+.|..++-.=+-.
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi  129 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI  129 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence            5666777788889999999999999886 3 5543 2222233355689999999999999874  24456666666666


Q ss_pred             HhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC---CchH
Q 047120          495 LGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG---MWND  569 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~  569 (634)
                      ...+|+.-+|++-+.+.  ....|...|.-+...|...|+++.|.-.+++++=..|-+|-.+..+++++.-.|   +++-
T Consensus       130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~  209 (289)
T KOG3060|consen  130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL  209 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            77788888888877766  566789999999999999999999999999999999999999999999977655   4567


Q ss_pred             HHHHHHHHHhCCC
Q 047120          570 ARRVRSMMKERNL  582 (634)
Q Consensus       570 A~~~~~~~~~~~~  582 (634)
                      |.+++.+..+...
T Consensus       210 arkyy~~alkl~~  222 (289)
T KOG3060|consen  210 ARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHhCh
Confidence            8899988877655

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.17  E-value=2.6e-06  Score=51.64  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCc
Q 047120           85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK  119 (634)
Q Consensus        85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  119 (634)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            36889999999999999999999999988888874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.14  E-value=0.017  Score=60.54  Aligned_cols=404  Identities=14%  Similarity=0.123  Sum_probs=197.2

Q ss_pred             hcCCHHHHHHHHhhCCCC-ChhHHHHHHHH--HHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHHHHHHH
Q 047120          166 RCGYLEFARQLFDKMGIR-DSVSYNSMIDG--YVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQFAWQI  241 (634)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~  241 (634)
                      ..+++.+|.+..+++.++ ....|...+.+  +.+.|+.++|..+++..... ..|..|...+-.+|...+. .++|..+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHH
Confidence            456777777777766432 22234444443  35677888888777766555 3355566666666666676 7777777


Q ss_pred             HhhCCC--CCchHHHHHHHHHHhcCChH----HHHHHHhhCCCCChhHHHHHHHHHHHc-CC---------hHHHHHHhh
Q 047120          242 FEKMPE--RDLISWNSMLHGCVKCGKMD----DAQALFDKMPKRDVVSWANMIDGYAKL-GR---------VDIARRLFD  305 (634)
Q Consensus       242 ~~~~~~--~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~~~~  305 (634)
                      +++...  |+......+..+|.+.+.+.    -|++++....+.--.-|+. ++.+... ..         ..-|.+.++
T Consensus       100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~  178 (932)
T KOG2053|consen  100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQ  178 (932)
T ss_pred             HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHH
Confidence            777766  44444444555666655553    3455555444333333332 2222211 11         122344444


Q ss_pred             hCCCCC-h----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047120          306 EMPKRD-V----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS  380 (634)
Q Consensus       306 ~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  380 (634)
                      .+.+.+ .    .-...-...+-..|++++|++++..-..+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus       179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence            443322 0    00111122334456666666666333322111222233334455555666666666666666665522


Q ss_pred             CchhHHHHHHHHh----------------HhcCCHHHHHHHHHhccCC-ChhHHHHHHHHH---HHcCChHHHHHHHHHH
Q 047120          381 LNGKHGVALIDMY----------------SKCGSIENAIKVFEQIEDG-SVDHWNAMINGL---AIHGLGELAFDLLMEM  440 (634)
Q Consensus       381 ~~~~~~~~l~~~~----------------~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~~~~~~A~~~~~~m  440 (634)
                       |   |...++.+                ...+..+...+..++.... .-..|-+=+.++   ..-|+.+++.-.|-+-
T Consensus       259 -d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k  334 (932)
T KOG2053|consen  259 -D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK  334 (932)
T ss_pred             -c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence             1   22222111                1112222222222222211 111122222222   2335555544333222


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh-------HHHHHHHHHhccCCH-----HHHHHHH
Q 047120          441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-------HYGCMVDILGRAGHI-----EAARNLI  508 (634)
Q Consensus       441 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~A~~~~  508 (634)
                      .  |-.|   .|..=+..|...=..++-..++.....   ..++..       -+.+.+......|.+     +.-..++
T Consensus       335 f--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~  406 (932)
T KOG2053|consen  335 F--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV  406 (932)
T ss_pred             h--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence            1  2122   222222233333334444444444432   122211       123333333334422     2223333


Q ss_pred             HhC------C------CCCCH---------HHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120          509 EDM------P------MEPND---------VIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL  564 (634)
Q Consensus       509 ~~~------~------~~p~~---------~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  564 (634)
                      ++.      +      .-|..         .+.+.|+..+.+.++   +-+|+-+++..+..+|-|+.+-..++.+|.-.
T Consensus       407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l  486 (932)
T KOG2053|consen  407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL  486 (932)
T ss_pred             HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence            222      1      11222         134567777887665   56788888999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhCCCc
Q 047120          565 GMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       565 g~~~~A~~~~~~~~~~~~~  583 (634)
                      |-+..|.+.++.+--..|.
T Consensus       487 Ga~p~a~~~y~tLdIK~IQ  505 (932)
T KOG2053|consen  487 GAFPDAYELYKTLDIKNIQ  505 (932)
T ss_pred             cCChhHHHHHHhcchHHhh
Confidence            9999999999988555554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.10  E-value=7.6e-05  Score=62.34  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=84.3

Q ss_pred             HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 047120          436 LLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM  513 (634)
Q Consensus       436 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  513 (634)
                      .+++....  .|+. .....+...+...|++++|.+.++.+...  .+.+...+..+...+.+.|++++|...+++. ..
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445443  4543 45566677778888888888888888762  2345677788888888889999998888877 33


Q ss_pred             CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120          514 EP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS  553 (634)
Q Consensus       514 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  553 (634)
                      .| +...+..+...+...|++++|...++++++.+|.++..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            44 46677777888888999999999999999988877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.10  E-value=0.00013  Score=71.38  Aligned_cols=127  Identities=14%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             hHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 047120          384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHA  462 (634)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~  462 (634)
                      .....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|++++.+....  .| +...+..-...|.+.
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence            444566777777888888888888888777777777888888888888999998888865  34 455666667778889


Q ss_pred             CCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhCCCCC
Q 047120          463 GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDMPMEP  515 (634)
Q Consensus       463 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  515 (634)
                      ++++.|+.+.+++...   .|+ ..+|..|..+|.+.|+++.|+..++.+++-+
T Consensus       248 ~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  248 KKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             CCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            9999999999988763   454 5689999999999999999999998886443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.08  E-value=4.5e-06  Score=50.11  Aligned_cols=33  Identities=30%  Similarity=0.511  Sum_probs=26.4

Q ss_pred             ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047120           85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV  117 (634)
Q Consensus        85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  117 (634)
                      .+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            568888888888888888888888888877776

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.08  E-value=3.3e-06  Score=63.54  Aligned_cols=78  Identities=19%  Similarity=0.280  Sum_probs=46.9

Q ss_pred             cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHH
Q 047120          498 AGHIEAARNLIEDM-PMEP---NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV  573 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  573 (634)
                      .|+++.|+.+++++ ...|   +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            35566666666665 2222   334444466666677777777777766 555565556666667777777777777777


Q ss_pred             HHH
Q 047120          574 RSM  576 (634)
Q Consensus       574 ~~~  576 (634)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.07  E-value=0.00012  Score=61.78  Aligned_cols=85  Identities=13%  Similarity=0.185  Sum_probs=39.2

Q ss_pred             HHHHHhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          491 MVDILGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      +...+...|++++|...|+.+ ...||.    .....|...+...|++++|...++. +...+..+..+...+++|.+.|
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence            334444555555555555544 111222    1223334444555555555555543 1222333344555555555555


Q ss_pred             CchHHHHHHHH
Q 047120          566 MWNDARRVRSM  576 (634)
Q Consensus       566 ~~~~A~~~~~~  576 (634)
                      ++++|...|++
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            55555555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.05  E-value=3e-05  Score=59.99  Aligned_cols=93  Identities=15%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      +..++..+...|++++|...++++ ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455677778888888888888876 33443 4667777777888899999999999999988888888889999999999


Q ss_pred             CchHHHHHHHHHHhC
Q 047120          566 MWNDARRVRSMMKER  580 (634)
Q Consensus       566 ~~~~A~~~~~~~~~~  580 (634)
                      ++++|...+++..+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999988887654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.04  E-value=0.00026  Score=59.74  Aligned_cols=124  Identities=14%  Similarity=0.096  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDD----ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGC  490 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~  490 (634)
                      |..++..+ ..++...+...++.+.+.  .|+.    .....+...+...|++++|...|+.+... ...|.  ......
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~   90 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence            44444444 467788888888888775  3332    24445566777888888888888888773 21222  123445


Q ss_pred             HHHHHhccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120          491 MVDILGRAGHIEAARNLIEDMP-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  544 (634)
                      |...+...|++++|+..++... -......+......+...|+.++|...|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6778888888888888887763 22334566667777888888888888888763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.01  E-value=5.9e-05  Score=61.37  Aligned_cols=93  Identities=13%  Similarity=0.042  Sum_probs=52.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSN  559 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  559 (634)
                      +..++..+.+.|++++|.+.++++ ...|+    ...+..+..++...|++++|...+++++...|.+   +..+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344455555566666666665555 22222    2244445555666666666666666666655543   335556666


Q ss_pred             HHhcCCCchHHHHHHHHHHhC
Q 047120          560 MFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       560 ~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ++.+.|++++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            666666666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.00  E-value=0.018  Score=55.63  Aligned_cols=416  Identities=11%  Similarity=0.097  Sum_probs=209.1

Q ss_pred             ccCChHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHH--HHhCCCh
Q 047120          131 RLGLIEEGLQIHGLLRKVAFGSDLF------LQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDG--YVKSGNI  201 (634)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~  201 (634)
                      +++++.++..+|.++.+.. ..+++      .-+.++++|.- .+++.....+....+. ....|-.+..+  +-+.+.+
T Consensus        18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~   95 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY   95 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence            6778888888888876543 22222      23456666654 3344444443333221 13344444443  3466777


Q ss_pred             HHHHHHHhhCccC----CCCh-h-HHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhh
Q 047120          202 ESARELFDSMPIR----ERNL-I-SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK  275 (634)
Q Consensus       202 ~~A~~~~~~m~~~----~p~~-~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  275 (634)
                      .+|++.+..-...    .|.. . -+..++                      +|...-+..++++...|++.++..++++
T Consensus        96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~----------------------~df~l~~i~a~sLIe~g~f~EgR~iLn~  153 (549)
T PF07079_consen   96 RKALQALSVWKEQIKGTESPWLDTNIQQLF----------------------SDFFLDEIEAHSLIETGRFSEGRAILNR  153 (549)
T ss_pred             HHHHHHHHHHHhhhcccccchhhhhHHHHh----------------------hHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            7777766544332    1100 0 000000                      1112223445666677777777777666


Q ss_pred             CCC--------CChhHHHHHHHHHHHcCChH---------------HHHHHhhhCCC----------CChhhHHHHHHHH
Q 047120          276 MPK--------RDVVSWANMIDGYAKLGRVD---------------IARRLFDEMPK----------RDVVACNAMMGGY  322 (634)
Q Consensus       276 ~~~--------~~~~~~~~l~~~~~~~g~~~---------------~A~~~~~~~~~----------~~~~~~~~l~~~~  322 (634)
                      +.+        =+..+|+.++-++++.=-++               .+.-..+++..          |.......++...
T Consensus       154 i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhl  233 (549)
T PF07079_consen  154 IIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHL  233 (549)
T ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHH
Confidence            642        35566666555444431111               11111111111          1111112222222


Q ss_pred             HHc--CCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCC----chhHHHHHHHHhHh
Q 047120          323 VRN--GYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL----NGKHGVALIDMYSK  395 (634)
Q Consensus       323 ~~~--g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~  395 (634)
                      .-.  .+..--+++++..... -+.|+... ...+......  +.+.+..+.+.+....+.+    -...+..++....+
T Consensus       234 fi~p~e~l~~~mq~l~~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk  310 (549)
T PF07079_consen  234 FIVPKERLPPLMQILENWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK  310 (549)
T ss_pred             HhCCHhhccHHHHHHHHHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            111  1122223333333333 45565322 2222222222  5555555554444332111    13455666666777


Q ss_pred             cCCHHHHHHHHHhcc--CCChhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HH
Q 047120          396 CGSIENAIKVFEQIE--DGSVDH-------WNAMINGLA----IHGLGELAFDLLMEMERLSIEPDDI-TFTGLL---NA  458 (634)
Q Consensus       396 ~~~~~~A~~~~~~~~--~~~~~~-------~~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll---~~  458 (634)
                      .++...|.+.+.-+.  +|+...       -..+-+..+    ..-+...=+.+|+......  .|.. ....++   .-
T Consensus       311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~  388 (549)
T PF07079_consen  311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKH  388 (549)
T ss_pred             HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHH
Confidence            788888877776554  332211       111112222    1122334455666665542  3432 222222   33


Q ss_pred             HhccCC-HHHHHHHHHHhHHhcCcccChhHHHHHHH----HHhcc---CCHH---HHHHHHHhCCCCCC----HHHHHHH
Q 047120          459 CAHAGL-VKEGLLCFELMRRIHKLEPELQHYGCMVD----ILGRA---GHIE---AARNLIEDMPMEPN----DVIWRTL  523 (634)
Q Consensus       459 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~p~----~~~~~~l  523 (634)
                      +.+.|. -++|+++++.+.+-.  +-|...-|.+..    .|.+.   ..+.   +-..++++.+++|-    ...-+.|
T Consensus       389 lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L  466 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL  466 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence            555665 888999999887721  234443333222    22221   1111   22334455565553    3466777


Q ss_pred             HHH--HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          524 LSA--CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       524 ~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      ..|  +...|++.++.-.-.-+.+..| +|.+|..+|..+....++++|..++..+.
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            776  5789999999998888889999 89999999999999999999999998763

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.99  E-value=1.1e-05  Score=57.98  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC-CchHHHHHHHHHHhC
Q 047120          516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG-MWNDARRVRSMMKER  580 (634)
Q Consensus       516 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  580 (634)
                      +..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|++.+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            46788888999999999999999999999999999999999999999999 799999999988653

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=7.3e-05  Score=67.65  Aligned_cols=105  Identities=14%  Similarity=0.053  Sum_probs=60.4

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a  536 (634)
                      ..+.++|.+|+..|..+++.  .+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            44556666666666666542  1223444555556666666666666655554 44454 33666666666666666666


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      ++.|+++++++|.+......|-.+-.+.+
T Consensus       169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            66666666666666655555554444333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.94  E-value=2e-05  Score=55.83  Aligned_cols=58  Identities=16%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +...+...|++++|+..++++++.+|.++..+..++.++...|++++|..+++++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556788899999999999999999999999999999999999999999999888654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.92  E-value=0.00014  Score=59.07  Aligned_cols=105  Identities=9%  Similarity=0.024  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLL  524 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  524 (634)
                      ++..+...+.+.|++++|...++.+.....-.+ ....+..+..++.+.|++++|.+.++++ ...|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344455556666666666666666655321111 1234555666777777777777777765 22233    34566666


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                      .++.+.|+.++|...++++++..|+++....
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            7777788888888888888888777655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.92  E-value=2.1e-05  Score=47.52  Aligned_cols=33  Identities=42%  Similarity=0.633  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPD  448 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  448 (634)
                      +||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888889999999999888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.89  E-value=0.049  Score=57.25  Aligned_cols=206  Identities=20%  Similarity=0.178  Sum_probs=95.1

Q ss_pred             CCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh--ccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 047120           97 GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS--RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR  174 (634)
Q Consensus        97 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  174 (634)
                      .+++.+|+.....+.+.-  |+. .|..++.++.  +.|..++|..+++.....+.. |..+...+-.+|-+.++.++|.
T Consensus        22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            455555555555554421  332 2334444432  555555555555554444333 5555555555555566666666


Q ss_pred             HHHhhCCC--CChhHHHHHHHHHHhCCChH----HHHHHHhhCccCCCChhHHHHHHHHHHhcCC---------cHHHHH
Q 047120          175 QLFDKMGI--RDSVSYNSMIDGYVKSGNIE----SARELFDSMPIRERNLISWNSVLNGYAQLKS---------GLQFAW  239 (634)
Q Consensus       175 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~---------~~~~a~  239 (634)
                      .+++....  |+..-...+..+|++.+.+.    .|+++++....   ....+-++++.+.....         -+..|.
T Consensus        98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            66655543  33333334444455544443    24444443322   11222222222222110         123344


Q ss_pred             HHHhhCCCCC--c---hHHHHHHHHHHhcCChHHHHHHHhh-----CCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC
Q 047120          240 QIFEKMPERD--L---ISWNSMLHGCVKCGKMDDAQALFDK-----MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK  309 (634)
Q Consensus       240 ~~~~~~~~~~--~---~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  309 (634)
                      +.++.+.+.+  .   .-.......+...|++++|.+++..     ....+...-+.-++.+...+++.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            4444444322  1   1111123344566777777777622     1223444445566666777777766665555543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.85  E-value=0.00014  Score=63.47  Aligned_cols=96  Identities=9%  Similarity=0.020  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      ..+..+...+...|++++|...++++ ...|+    ...+..+...+.+.|++++|...++++++..|.++..+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34555666666677777777776665 22222    34667777777888888888888888888888888888888888


Q ss_pred             HhcCCC--------------chHHHHHHHHHHhCC
Q 047120          561 FAGLGM--------------WNDARRVRSMMKERN  581 (634)
Q Consensus       561 ~~~~g~--------------~~~A~~~~~~~~~~~  581 (634)
                      |...|+              +++|.+++++....+
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            877666              456666666665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.84  E-value=0.00012  Score=72.06  Aligned_cols=109  Identities=8%  Similarity=0.037  Sum_probs=90.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 047120          454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYE  531 (634)
Q Consensus       454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g  531 (634)
                      .-...+...|++++|+..|+.+.+.  .+.+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            3455677889999999999999873  2335677888999999999999999999998 55564 668888889999999


Q ss_pred             ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL  564 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  564 (634)
                      ++++|+..++++++++|.++.....+..+..+.
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998887776665433

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.83  E-value=3.5e-05  Score=46.12  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047120          415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP  447 (634)
Q Consensus       415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  447 (634)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467888888888888888888888888888776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.83  E-value=0.00014  Score=63.24  Aligned_cols=93  Identities=8%  Similarity=-0.138  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN  559 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  559 (634)
                      ...|..++..+...|++++|+..+++. .+.|+    ..+|..+...+...|++++|+..++++++..|..+..+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            455677777788888888888888877 33333    3478888888999999999999999999999988888888888


Q ss_pred             HHh-------cCCCchHHHHHHHHH
Q 047120          560 MFA-------GLGMWNDARRVRSMM  577 (634)
Q Consensus       560 ~~~-------~~g~~~~A~~~~~~~  577 (634)
                      ++.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       888888666666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.83  E-value=0.00084  Score=68.97  Aligned_cols=139  Identities=12%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhHH
Q 047120          412 GSVDHWNAMINGLAI--HG---LGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHA--------GLVKEGLLCFELMRR  477 (634)
Q Consensus       412 ~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~  477 (634)
                      .+...|...+.+...  .+   +...|..+|++..+.  .|+. ..|..+..++...        .++..+.+.......
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            455556555555332  22   256777888887764  6663 3444433332211        122333333333322


Q ss_pred             hcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      ......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.+|.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            1112334456666666666678888888888777 56677777777777788888888888888888888877764

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.81  E-value=0.03  Score=53.73  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHhhC
Q 047120          187 SYNSMIDGYVKSGNIESARELFDSM  211 (634)
Q Consensus       187 ~~~~li~~~~~~g~~~~A~~~~~~m  211 (634)
                      +|..+.....+.|+.+-|..+++.=
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~~E   26 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLELE   26 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHHcC
Confidence            5667777778888888888877643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.80  E-value=2.5e-05  Score=45.65  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=24.8

Q ss_pred             ccHHHHHHHHHcCCCcchHHHHHHHHHHCCC
Q 047120           85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV  115 (634)
Q Consensus        85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  115 (634)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4688888888888888888888888887763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.75  E-value=0.0024  Score=63.84  Aligned_cols=282  Identities=15%  Similarity=0.101  Sum_probs=136.0

Q ss_pred             CCCCcccHHHHHHHHHcCCCcchHHHH---------HHHHHHCCCCCCcchHHHHHHHHhccCChH--HHHHHHHHHHHh
Q 047120           80 EKKDPFLWNAIIKTYSHGLDPKEALVM---------FCLMLDNGVSVDKFSASLVLKACSRLGLIE--EGLQIHGLLRKV  148 (634)
Q Consensus        80 ~~~~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~  148 (634)
                      +.+-.+.+.+-+..|...|.+++|.++         |+.+-..  ..+.-.++..=++|.+..+..  +...-++++.++
T Consensus       552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r  629 (1081)
T KOG1538|consen  552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR  629 (1081)
T ss_pred             eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence            345556666777778888888887765         2222111  123333444445565555443  333345566777


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHH
Q 047120          149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY  228 (634)
Q Consensus       149 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~  228 (634)
                      |-.|+...   +...++-.|.+.+|.++|.+                  .|.-..|+++|..|.-       + ....-+
T Consensus       630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-------F-D~aQE~  680 (1081)
T KOG1538|consen  630 GETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-------F-DYAQEF  680 (1081)
T ss_pred             CCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-------H-HHHHHH
Confidence            76676654   34556677888888887765                  5666677777766543       0 011111


Q ss_pred             HhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhh
Q 047120          229 AQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE  306 (634)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  306 (634)
                      ...+. .++-..+.++-.+  .|+.--.+....+...|+.++|..+                  ....|-.+-+.++-++
T Consensus       681 ~~~g~-~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rk  741 (1081)
T KOG1538|consen  681 LGSGD-PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARK  741 (1081)
T ss_pred             hhcCC-hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhh
Confidence            11122 1111111110000  0110011112233334444433322                  2223333444444444


Q ss_pred             CCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 047120          307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG  386 (634)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  386 (634)
                      +...+..+...+..-+.+...+..|.++|..|-..          ..++......+++++|..+-+..-+  +.+  .+|
T Consensus       742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~--dVy  807 (1081)
T KOG1538|consen  742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKD--DVY  807 (1081)
T ss_pred             cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccc--ccc
Confidence            44444444444444455555566666666665421          2344444555566555554433222  111  223


Q ss_pred             HHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120          387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL  443 (634)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  443 (634)
                      ......++...++++|.+                  +|.+.|+-.+|..+++++...
T Consensus       808 ~pyaqwLAE~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  808 MPYAQWLAENDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             chHHHHhhhhhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence            334444555555555554                  455677888888888877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.74  E-value=0.00034  Score=68.74  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR  497 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  497 (634)
                      .....+...|++++|+..|++.++.  .|+ ...|..+..++...|++++|+..++.+....  +.+...|..+..+|..
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHH
Confidence            3456677889999999999999985  554 5688888999999999999999999998731  3356678889999999


Q ss_pred             cCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047120          498 AGHIEAARNLIEDM-PMEPNDVIWRTLLSA  526 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~  526 (634)
                      .|++++|+..|+++ .+.|+.......+..
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999997 666775555544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.74  E-value=0.0055  Score=58.36  Aligned_cols=90  Identities=10%  Similarity=0.129  Sum_probs=38.5

Q ss_pred             Hhcc-CCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhCC---C-----CCCHH-HHHHHH
Q 047120          459 CAHA-GLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDMP---M-----EPNDV-IWRTLL  524 (634)
Q Consensus       459 ~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~l~  524 (634)
                      |... |++++|.+.|+.+...+....+    ..++..++..+.+.|++++|.++|++..   .     +.+.. .+...+
T Consensus       124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~  203 (282)
T PF14938_consen  124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI  203 (282)
T ss_dssp             HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence            4444 5555555555554442111111    2234455555566666666666665541   0     11111 111222


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCC
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      -.+...||...|.+.+++....+|
T Consensus       204 l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  204 LCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC
Confidence            233445666666666666665555

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.71  E-value=0.00096  Score=58.23  Aligned_cols=129  Identities=12%  Similarity=0.081  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH
Q 047120          415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD--DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV  492 (634)
Q Consensus       415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  492 (634)
                      ..+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...++++....  +.+...+..+.
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg  113 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence            3566666667777777777777777665432222  2456666666677777777777777666521  12244455555


Q ss_pred             HHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120          493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  566 (634)
                      .+|...|+...+..-++..                  ...+++|.++++++++.+|++   |..++..+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            6666666554444322221                  012677888888888888766   5555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.70  E-value=0.00011  Score=55.24  Aligned_cols=80  Identities=13%  Similarity=0.189  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 047120          463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND-VIWRTLLSACRNYENLNVGEPVAK  541 (634)
Q Consensus       463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~  541 (634)
                      |+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++.+..|.. .....+..+|.+.|++++|+.+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~   82 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE   82 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4444455555444442111112222333445555555555555555443222221 222223334445555555555544


Q ss_pred             H
Q 047120          542 H  542 (634)
Q Consensus       542 ~  542 (634)
                      +
T Consensus        83 ~   83 (84)
T PF12895_consen   83 K   83 (84)
T ss_dssp             H
T ss_pred             c
Confidence            3

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.67  E-value=0.00012  Score=51.74  Aligned_cols=61  Identities=15%  Similarity=0.209  Sum_probs=49.3

Q ss_pred             HHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          491 MVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      +...+.+.|++++|++.|+++ ...|+ ...+..+..++...|++++|...++++++.+|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456788889999999999887 55564 56888888889999999999999999999998875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00018  Score=65.17  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=80.0

Q ss_pred             HHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120          493 DILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA  570 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  570 (634)
                      .-+.+.+++++|+..|.++ .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|..+|++++|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            4456889999999999987 6665 4677788888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 047120          571 RRVRSMMKERNL  582 (634)
Q Consensus       571 ~~~~~~~~~~~~  582 (634)
                      ++.|++..+...
T Consensus       169 ~~aykKaLeldP  180 (304)
T KOG0553|consen  169 IEAYKKALELDP  180 (304)
T ss_pred             HHHHHhhhccCC
Confidence            999998877543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.61  E-value=0.00058  Score=52.54  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 047120          456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENL  533 (634)
Q Consensus       456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~  533 (634)
                      ...+...|++++|..+++.+.+..  +.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|++
T Consensus         7 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (100)
T cd00189           7 GNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY   84 (100)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence            333444455555555554444311  112233444455555555555555555543 2222 223455555555556666


Q ss_pred             hHHHHHHHHHhccCC
Q 047120          534 NVGEPVAKHLIGMDS  548 (634)
Q Consensus       534 ~~a~~~~~~~~~~~p  548 (634)
                      +.|...++++++..|
T Consensus        85 ~~a~~~~~~~~~~~~   99 (100)
T cd00189          85 EEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHccCC
Confidence            666666666655544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.60  E-value=5.5e-05  Score=54.19  Aligned_cols=53  Identities=9%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ...|++++|++.++++++.+|.++..+..++.+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45688888888888888888888888888888888888888888888776544

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.59  E-value=0.00017  Score=52.47  Aligned_cols=58  Identities=12%  Similarity=0.121  Sum_probs=51.5

Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..+.+.+++++|.++++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4678889999999999999999999999999999999999999999999998876544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.57  E-value=0.00073  Score=56.15  Aligned_cols=90  Identities=9%  Similarity=0.017  Sum_probs=77.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120          490 CMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW  567 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  567 (634)
                      ....-+...|++++|..+|+-+ -. .-+..-|..|...+...+++++|+..|..+..+++++|......+..|...|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            3455567899999999999877 22 334566788888888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHh
Q 047120          568 NDARRVRSMMKE  579 (634)
Q Consensus       568 ~~A~~~~~~~~~  579 (634)
                      +.|...|+...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0018  Score=59.27  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=88.0

Q ss_pred             ccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCCchHHH
Q 047120          482 EPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRN---YENLNVGEPVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       482 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~  556 (634)
                      +-|...|..|...|.+.|+.+.|...|.+. .+. +++..+..+..++..   .....++..+++++++.+|.++.....
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            456888999999999999999999999887 444 446677777776432   335688999999999999999999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHhCCCccCC
Q 047120          557 LSNMFAGLGMWNDARRVRSMMKERNLKKLP  586 (634)
Q Consensus       557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  586 (634)
                      |+..+...|++.+|...|+.|.+.....+|
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999988776554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.51  E-value=0.012  Score=49.54  Aligned_cols=132  Identities=14%  Similarity=0.108  Sum_probs=101.5

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-----CCCCHH
Q 047120          445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-----MEPNDV  518 (634)
Q Consensus       445 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~  518 (634)
                      +.|+...-..|..+..+.|++.+|...|++... .-+..|....-.+.++....+++..|...++++ .     ..||. 
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence            467777778888889999999999999998876 344556777778888888999999999888876 2     23443 


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                       ...+...+...|.++.|+..|+.++.-.|. +..-..++..+.++|+.+++..-+..+.+.
T Consensus       163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence             334566788889999999999999887763 556667788888999888887766655443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.51  E-value=0.026  Score=53.80  Aligned_cols=95  Identities=11%  Similarity=0.035  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhc-CcccC--hhH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIEP-----DDI-TFTGLLNACAHAGLVKEGLLCFELMRRIH-KLEPE--LQH  487 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~  487 (634)
                      +..++..+.+.|++++|.++|++........     +.. .|...+-++...|++..|.+.++...... ++..+  ...
T Consensus       158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~  237 (282)
T PF14938_consen  158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF  237 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            4445555666666666666666655432211     111 22222334444556666666666554311 12112  222


Q ss_pred             HHHHHHHHhc--cCCHHHHHHHHHhC
Q 047120          488 YGCMVDILGR--AGHIEAARNLIEDM  511 (634)
Q Consensus       488 ~~~l~~~~~~--~g~~~~A~~~~~~~  511 (634)
                      ...|+.++-.  ...+++|+.-|+.+
T Consensus       238 ~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  238 LEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            3344444432  23455555555555

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.50  E-value=0.0016  Score=52.00  Aligned_cols=87  Identities=16%  Similarity=0.049  Sum_probs=59.0

Q ss_pred             HHHHHhccCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCchHHHHHHHHh
Q 047120          491 MVDILGRAGHIEAARNLIEDM---PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS---NSSSYVLLSNMFA  562 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~  562 (634)
                      +..++-..|+.++|+.+|++.   +....  ...+-.+...+...|++++|..++++.+...|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            455666777777777777765   22222  235556667777788888888888877777666   5556666777777


Q ss_pred             cCCCchHHHHHHHHH
Q 047120          563 GLGMWNDARRVRSMM  577 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~  577 (634)
                      ..|+.++|.+.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            788888877776554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.47  E-value=0.0014  Score=64.43  Aligned_cols=124  Identities=12%  Similarity=0.030  Sum_probs=84.0

Q ss_pred             CCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhcccc--CCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC
Q 047120           41 GFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF--REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD  118 (634)
Q Consensus        41 ~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  118 (634)
                      +.+.+......+++......++   +++..++-+....  ....-..|.+++|+.|...|..+.+++++..=...|+-||
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~---d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D  137 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDL---DEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD  137 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHH---HHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence            3444555566666666555554   6666666665432  1222234556888888888888888888888777888888


Q ss_pred             cchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 047120          119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC  167 (634)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  167 (634)
                      ..|++.+|..+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus       138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888888888877777656666665555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.46  E-value=0.0012  Score=50.51  Aligned_cols=80  Identities=11%  Similarity=-0.004  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHCCC-CCCcchHHHHHHHHhccC--------ChHHHHHHHHHHHHhcCCCChhHH
Q 047120           87 WNAIIKTYSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLG--------LIEEGLQIHGLLRKVAFGSDLFLQ  157 (634)
Q Consensus        87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~  157 (634)
                      ....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-..+.+|+.|+..++.|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456666667899999999999999999 889999999998877543        234566788999999999999999


Q ss_pred             HHHHHHHHh
Q 047120          158 NCLISLYVR  166 (634)
Q Consensus       158 ~~li~~~~~  166 (634)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            998887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.45  E-value=0.12  Score=49.69  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=87.6

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL  464 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  464 (634)
                      +.+..+.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-..+...      +-++..|..++.+|.+.|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            3344455566778888888888888888888888888888888888876665432      2245778888888888888


Q ss_pred             HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047120          465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR  528 (634)
Q Consensus       465 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  528 (634)
                      ..+|..+...+.           +..-+..|.++|++.+|.+..-+.   -|...+..+...+-
T Consensus       253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~  302 (319)
T PF04840_consen  253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP  302 (319)
T ss_pred             HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence            888888776632           134567788888888888776553   34555444444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.45  E-value=0.018  Score=53.09  Aligned_cols=56  Identities=9%  Similarity=0.107  Sum_probs=45.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      +..-|.+.|.+.-|..-++.+++..|..+.   +...++.+|...|..++|.++...+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            445578889999999999999998877654   66777888999999999998887653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.45  E-value=6.4e-05  Score=44.57  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHH
Q 047120          539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR  572 (634)
Q Consensus       539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  572 (634)
                      +|+++++++|+++.+|..|+.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999863

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.43  E-value=0.0021  Score=55.88  Aligned_cols=99  Identities=12%  Similarity=0.001  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSAC  527 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~  527 (634)
                      .|..+...+...|++++|...++.+.....-.+ ...++..+..+|...|++++|++.+++. .+.|+ ..++..+...+
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~  116 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC  116 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            334444444445555555555555543211011 1224445555555555555555555554 22222 22333333333


Q ss_pred             H-------hcCChh-------HHHHHHHHHhccCCC
Q 047120          528 R-------NYENLN-------VGEPVAKHLIGMDSS  549 (634)
Q Consensus       528 ~-------~~g~~~-------~a~~~~~~~~~~~p~  549 (634)
                      .       ..|+++       +|..++++++..+|+
T Consensus       117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            3       555555       455555556655554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.049  Score=52.05  Aligned_cols=85  Identities=12%  Similarity=-0.035  Sum_probs=59.1

Q ss_pred             HHhHhcCCHHHHHHHHHhccCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 047120          391 DMYSKCGSIENAIKVFEQIEDG-------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHA  462 (634)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~  462 (634)
                      +-..+.|++..|.+.|.+....       +...|.....+..+.|+.++|+.--++..+  +.|. ...|..-..++...
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence            3456778888888888877632       333566666777788888888888777764  2333 22555555667778


Q ss_pred             CCHHHHHHHHHHhHH
Q 047120          463 GLVKEGLLCFELMRR  477 (634)
Q Consensus       463 g~~~~a~~~~~~~~~  477 (634)
                      ++|++|.+-++.+.+
T Consensus       335 e~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  335 EKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888888888776

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.42  E-value=0.0011  Score=62.53  Aligned_cols=130  Identities=12%  Similarity=0.014  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-------C-CCCCH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRR---IHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-------P-MEPND  517 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~  517 (634)
                      ..|..|.+.|.-.|++++|+...+.-..   .+|-.. ....+..|.+++.-.|+++.|.+.++..       + .....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            3566677777777888888876554221   133222 2345777888888888888888877654       1 12233


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccC----C--CCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMD----S--SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+..+|..+|.-..+++.|+.++++=+.+.    .  .....+..|+.+|...|..++|..+.+...+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            455667777777778888888777655432    1  2234777888888888888888888776644

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.42  E-value=0.0002  Score=41.70  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLS  444 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g  444 (634)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56777777777777777777777777665

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.40  E-value=0.0011  Score=61.64  Aligned_cols=93  Identities=9%  Similarity=0.041  Sum_probs=58.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSN  559 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  559 (634)
                      |...+..+.+.|++++|...|+.. ...|+.    ..+..+...|...|++++|...|+++++..|++   ++.+..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            444444445567777777776665 223332    355566666777777777777777777766654   345555566


Q ss_pred             HHhcCCCchHHHHHHHHHHhC
Q 047120          560 MFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       560 ~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ++...|++++|..+++++.+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777776544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.39  E-value=0.00018  Score=51.42  Aligned_cols=57  Identities=14%  Similarity=0.191  Sum_probs=28.4

Q ss_pred             ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVI  519 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~  519 (634)
                      +.|++++|+++|+.+....  +.+...+..++.+|.+.|++++|.++++++ ...|+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            3455566666665555421  223444445555555555555555555555 33444333

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.39  E-value=0.00029  Score=50.54  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYE-NLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p  548 (634)
                      +...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3456777788888888888888888876 44454 557777888888888 68888888888888876

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.39  E-value=0.0052  Score=63.25  Aligned_cols=135  Identities=13%  Similarity=0.038  Sum_probs=98.0

Q ss_pred             CCCCCHHHHHHHHHHHhc-----cCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhcc--------CCHHHHHHHHH
Q 047120          444 SIEPDDITFTGLLNACAH-----AGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRA--------GHIEAARNLIE  509 (634)
Q Consensus       444 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~  509 (634)
                      +...+...|...+++...     .++...|..+|+++.+.   .|+ ...|..+..+|...        ++...+.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            345567788888776443     23477999999999873   566 44455544444322        22344555555


Q ss_pred             hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          510 DM----PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       510 ~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +.    ....++..|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.++++...+.
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            43    1334567788777777778999999999999999999 578999999999999999999999999976654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0058  Score=58.05  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=101.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCcccChhH------------
Q 047120          422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN--ACAHAGLVKEGLLCFELMRRIHKLEPELQH------------  487 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------  487 (634)
                      .++...|++++|...--..++.  .++ ..+..+++  ++.-.++.+.|...|++..+   +.|+...            
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le  250 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE  250 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence            4556677777777766655543  222 12222222  33456677777777777654   2343222            


Q ss_pred             -HHHHHHHHhccCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          488 -YGCMVDILGRAGHIEAARNLIEDM-PMEP-----NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       488 -~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                       +..=.+-..+.|++.+|.+.+.+. .+.|     +...|.....+..+.|+.++|+.-.+++++++|.-...|..-+.+
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence             122233456788888888888876 4444     445666666677788888888888888888888777777777888


Q ss_pred             HhcCCCchHHHHHHHHHHhCC
Q 047120          561 FAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       561 ~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +.-.++|++|.+.+++..+..
T Consensus       331 ~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            888888888888888776543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.36  E-value=0.0056  Score=58.04  Aligned_cols=134  Identities=16%  Similarity=0.138  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA-CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI  494 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (634)
                      +|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+.  +..+...|...++.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence            56667777777777888888888887532 2233445544444 23356666688888888874  34566778888888


Q ss_pred             HhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          495 LGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      +.+.|+.+.|..+|++. ..-|..    ..|...+..-.+.|+.+....+.+++.+..|.+..
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            88888888999888887 222332    48888888888889999999998888888776443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.29  E-value=0.0018  Score=61.37  Aligned_cols=129  Identities=11%  Similarity=0.122  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR-AGHIEAARNLIEDM--PMEPNDVIWRTLLSA  526 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~  526 (634)
                      .+|..+++..-+.+..+.|..+|..+++...  .+..+|...+..-.+ .++.+.|.++|+.+  ....+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            4677888888888899999999999986322  234555555555334 56777799999987  445677888899999


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNS---SSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +.+.|+.+.|..+|++++..-|...   ..|..++..-.+.|+.+.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998876654   48889999999999999999999998764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.29  E-value=0.00059  Score=64.31  Aligned_cols=94  Identities=13%  Similarity=0.058  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHh-------CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc----cC--CCCC
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIED-------MPME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIG----MD--SSNS  551 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--p~~~  551 (634)
                      ..|..|.+.|.-.|+++.|+..-+.       .+.+ .....+..+..++.-.|+++.|.+.|++.+.    ++  ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            4578888888899999999876442       2322 2245788888899999999999999988754    33  2345


Q ss_pred             chHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          552 SSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ...+.|++.|.-...+++|+.++.+-..
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLa  303 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLA  303 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999987643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.29  E-value=0.011  Score=49.06  Aligned_cols=94  Identities=11%  Similarity=-0.004  Sum_probs=60.5

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH  461 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  461 (634)
                      ....+...+...|++++|.++|+.+.   ..+..-|..|..++-..|++++|+..|........ -|+..+-.+..++..
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~  115 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence            33345555666677777777777654   22445666677777777777777777777766431 235566667777777


Q ss_pred             cCCHHHHHHHHHHhHHhc
Q 047120          462 AGLVKEGLLCFELMRRIH  479 (634)
Q Consensus       462 ~g~~~~a~~~~~~~~~~~  479 (634)
                      .|+.+.|.+.|+.+....
T Consensus       116 lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        116 CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            777777777777766533

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.28  E-value=0.2  Score=48.59  Aligned_cols=80  Identities=8%  Similarity=-0.067  Sum_probs=51.9

Q ss_pred             CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHH
Q 047120          116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMID  193 (634)
Q Consensus       116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~  193 (634)
                      +-|..+|-.|+.-+..++..++.++++++|..- ++.-+.+|..-+++-....++...+.+|.+...  -+...|...+.
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~  117 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE  117 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence            345567888888888888888888888887542 233344666666665666777777777776543  25556665555


Q ss_pred             HHH
Q 047120          194 GYV  196 (634)
Q Consensus       194 ~~~  196 (634)
                      --.
T Consensus       118 YIR  120 (660)
T COG5107         118 YIR  120 (660)
T ss_pred             HHH
Confidence            433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.28  E-value=0.18  Score=47.97  Aligned_cols=247  Identities=15%  Similarity=0.158  Sum_probs=154.1

Q ss_pred             HHcCCchHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047120          323 VRNGYSMKALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE  400 (634)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  400 (634)
                      .-.|+++.|.+-|+.|...    |...  -...|.-...+.|+.+.|..+-+..-..- +.-.......+...+..|+++
T Consensus       131 l~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         131 LLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD  205 (531)
T ss_pred             HhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence            3457777777777777632    3322  22233333456677777766666554432 223455666777777777777


Q ss_pred             HHHHHHHhcc-----CCChh--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 047120          401 NAIKVFEQIE-----DGSVD--HWNAMINGLAI---HGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGL  469 (634)
Q Consensus       401 ~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~  469 (634)
                      .|+++.+.-.     ++++.  .--.|+.+-..   ..+...|...-.+..+  +.||.. .-.....++.+.|+..++-
T Consensus       206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~  283 (531)
T COG3898         206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS  283 (531)
T ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence            7777776433     23322  11222222111   1235555555555443  577754 4556677899999999999


Q ss_pred             HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120          470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  544 (634)
                      .+++.+-+.   .|.+.++.  ...+.+.|+..  +.-+++.    .++|| ..+...+..+-...|++..|..--+.+.
T Consensus       284 ~ilE~aWK~---ePHP~ia~--lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~  356 (531)
T COG3898         284 KILETAWKA---EPHPDIAL--LYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA  356 (531)
T ss_pred             hHHHHHHhc---CCChHHHH--HHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            999999873   55555543  33455666533  2222222    34555 5567777888888999999998888888


Q ss_pred             ccCCCCCchHHHHHHHHhc-CCCchHHHHHHHHHHhCCCcc
Q 047120          545 GMDSSNSSSYVLLSNMFAG-LGMWNDARRVRSMMKERNLKK  584 (634)
Q Consensus       545 ~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~  584 (634)
                      ...|. ...|..|+++-.. .|+-.++.+.+-+..+....+
T Consensus       357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            77774 4688888888665 499999999998887775543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.27  E-value=0.0037  Score=47.95  Aligned_cols=79  Identities=18%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCcccChhHH
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERLSI-EPDDITFTGLLNACAHAG--------LVKEGLLCFELMRRIHKLEPELQHY  488 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~  488 (634)
                      ...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        ++.+.+.+|+.|.. .+++|+..+|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence            3455666667999999999999999999 899999999999877643        45567788888887 6889999999


Q ss_pred             HHHHHHHhc
Q 047120          489 GCMVDILGR  497 (634)
Q Consensus       489 ~~l~~~~~~  497 (634)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            988877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.29  Score=50.67  Aligned_cols=115  Identities=10%  Similarity=0.072  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047120          447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA  526 (634)
Q Consensus       447 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~  526 (634)
                      ....+.+--+.-+...|+..+|.++-.+.+     -||...|-.-+.+++..++|++-+++-+...   .+.-|.-...+
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~  753 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA  753 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence            334455555666677788888887766553     4777777777888888888888887777653   24556667788


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      |.+.|+.++|.+++-+.-        -+.....+|.+.|++.+|.+.--+-
T Consensus       754 c~~~~n~~EA~KYiprv~--------~l~ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  754 CLKQGNKDEAKKYIPRVG--------GLQEKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HHhcccHHHHhhhhhccC--------ChHHHHHHHHHhccHHHHHHHHHHh
Confidence            888888888887775531        1126778888888888888765443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.21  E-value=0.029  Score=54.20  Aligned_cols=160  Identities=17%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             HHHHHhHhcCCHHHHHHHHHhccCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIEDG-------SVDHWNAMINGLAI---HGLGELAFDLLMEMERLSIEPDDITFTGLLN  457 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  457 (634)
                      .++-.|....+++..+++++.+...       ....-...+-++.+   .|+.++|+.++..+....-.+++.+|..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444455566666666666665532       12222233445555   6777777777777555555666667766665


Q ss_pred             HHhc---------cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH----HHHHHH---Hh-C------CCC
Q 047120          458 ACAH---------AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE----AARNLI---ED-M------PME  514 (634)
Q Consensus       458 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------~~~  514 (634)
                      .|-.         ....++|+..|.+.-.   +.|+...--.++..+...|...    +..++-   .. .      .-.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5431         2346777777776643   3455433222222333333211    222221   11 1      123


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      .|-..+.+++.++.-.|++++|.+.+++++++.|+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            456677788888888999999999999999887543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.18  E-value=0.33  Score=49.13  Aligned_cols=181  Identities=13%  Similarity=0.096  Sum_probs=118.7

Q ss_pred             chhHHHHHHHHhHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047120          382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA  458 (634)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  458 (634)
                      +...|...+..-.+.|+.+.+.-+|+++.-+-   ...|-..+.-....|+.+-|..++....+--.+-.+.+-..-..-
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            45677777888888899999999998887442   224444444444558888888777766554333233333223333


Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHH---HHHHhC-CCCCCHHH----HHHHHHH-HH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAAR---NLIEDM-PMEPNDVI----WRTLLSA-CR  528 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~----~~~l~~~-~~  528 (634)
                      +...|++..|..+++.+...  . |+ +..-..-+....+.|..+.+.   +++... ..+.+...    +...... +.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            55678999999999999873  3 55 223333455667888888887   444443 21222222    2222222 34


Q ss_pred             hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      -.++.+.|..++.++.+..|++-..|..++......+
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999988877665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.17  E-value=0.0014  Score=63.76  Aligned_cols=62  Identities=11%  Similarity=0.029  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      ...++.+..+|.+.|++++|+..|++. .+.|+.    .+|..+..+|...|++++|+..++++++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444555556666666666666666554 444542    23555555566666666666666666554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.16  E-value=0.00053  Score=43.74  Aligned_cols=42  Identities=17%  Similarity=0.378  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN  559 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  559 (634)
                      .+|..+..+|...|++++|+++++++++.+|+++..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            367788899999999999999999999999999999988875

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.48  Score=49.21  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=43.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCCh--HHHHHHH-hhCccCCCChhHHHHHHHHHHhcC
Q 047120          159 CLISLYVRCGYLEFARQLFDKMGIRD---SVSYNSMIDGYVKSGNI--ESARELF-DSMPIRERNLISWNSVLNGYAQLK  232 (634)
Q Consensus       159 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~-~~m~~~~p~~~~~~~ll~~~~~~~  232 (634)
                      .+++-+...+.+..|+++-+.+..|.   ...|.....-+.+..+.  +++++.+ +++.....+..+|..+.......|
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G  521 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG  521 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence            34555666677777777777666553   34455555555554322  2222222 222221233345555555555556


Q ss_pred             CcHHHHHHHHhhC
Q 047120          233 SGLQFAWQIFEKM  245 (634)
Q Consensus       233 ~~~~~a~~~~~~~  245 (634)
                      . .+.|..+++.=
T Consensus       522 R-~~LA~kLle~E  533 (829)
T KOG2280|consen  522 R-FELARKLLELE  533 (829)
T ss_pred             c-HHHHHHHHhcC
Confidence            6 66666666543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.08  E-value=0.0051  Score=60.68  Aligned_cols=114  Identities=11%  Similarity=0.109  Sum_probs=91.6

Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHhCCCCch-----hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHH
Q 047120           16 STLLLLRKCKTLNDVNQIHARMITTGFIKNT-----HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI   90 (634)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l   90 (634)
                      -+-.+...|.+.+++..+-..+.+....|..     .+..++|+.|.+.|..   +++..++..=...|+-||..++|.|
T Consensus        68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~---~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAE---DELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCH---HHHHHHHhChhhcccCCChhhHHHH
Confidence            3444566677766655555555555444332     3557999999999998   9999999988889999999999999


Q ss_pred             HHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 047120           91 IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL  132 (634)
Q Consensus        91 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  132 (634)
                      |..+.+.|++..|.+++..|...+...+..|+...+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999998888888888888888877764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.04  E-value=0.49  Score=48.60  Aligned_cols=196  Identities=14%  Similarity=0.123  Sum_probs=114.8

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh------------hHHHHHHHHHHhCCChHHHHHHHhhCccCCCC
Q 047120          151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDS------------VSYNSMIDGYVKSGNIESARELFDSMPIRERN  217 (634)
Q Consensus       151 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  217 (634)
                      .|.+..|..|.......-+++.|+..|-+... +.+            ..-.+=|.+|  -|++++|.++|-+|.+..  
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence            57888898888877777788888888766542 111            1112223333  478888888888776631  


Q ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC-----CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHH
Q 047120          218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPE-----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA  292 (634)
Q Consensus       218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  292 (634)
                           ..+..+.+.|+ .-...++++..-.     .-...|+.+.+.+.....|++|.+.|..-..     ....+.+|.
T Consensus       765 -----LAielr~klgD-wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly  833 (1189)
T KOG2041|consen  765 -----LAIELRKKLGD-WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLY  833 (1189)
T ss_pred             -----hhHHHHHhhhh-HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHH
Confidence                 23344444455 5555555544332     1124677777777777777777776664321     123445555


Q ss_pred             HcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 047120          293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR  372 (634)
Q Consensus       293 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  372 (634)
                      +..++++-+.+-+.+++. ....-.+...+...|..++|.+.|-+--     .|     ...+..|...+++.+|.++-+
T Consensus       834 ~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  834 RLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             HHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555443 3345566777777787777777664332     12     234556666677777666544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.03  E-value=0.13  Score=52.13  Aligned_cols=86  Identities=10%  Similarity=-0.028  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH----------
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV----------  518 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----------  518 (634)
                      .+...+..-+.+...+.-|-++|.+|-.          ...+++.+...++|++|..+-++. ...||..          
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~  817 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN  817 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence            3444444445555566666666666533          124566677777777777777766 2334332          


Q ss_pred             -HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          519 -IWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       519 -~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                       -|...-.+|.+.|+-.+|.++++++-.
T Consensus       818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  818 DRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence             122233456677788888888877653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.02  E-value=0.028  Score=44.91  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=57.0

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHH
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS--LNGKHGVALIDM  392 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~  392 (634)
                      .+..++-..|+.++|+.+|++.... |...+  ...+..+...+...|++++|..+++........  .+......+.-+
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            3455666777777777777777765 54443  234555666667777777777777766653211  022222223334


Q ss_pred             hHhcCCHHHHHHHHHhccCCChhHHHHHH
Q 047120          393 YSKCGSIENAIKVFEQIEDGSVDHWNAMI  421 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li  421 (634)
                      +...|+.++|++.+-....++...|..-|
T Consensus        85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~  113 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALAETLPRYRRAI  113 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666655443333333333333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.01  E-value=0.53  Score=48.37  Aligned_cols=217  Identities=16%  Similarity=0.098  Sum_probs=131.6

Q ss_pred             HHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHC-CCCCCcc--------hHHHHHHHHhccCChH
Q 047120           66 EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKF--------SASLVLKACSRLGLIE  136 (634)
Q Consensus        66 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--------~~~~ll~~~~~~~~~~  136 (634)
                      ++|.+..+.      .|-+..|..+...-...-.++.|...|-+...- |++.-..        .-.+=+.  +--|.++
T Consensus       680 edA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~fe  751 (1189)
T KOG2041|consen  680 EDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFE  751 (1189)
T ss_pred             HHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchh
Confidence            666665553      355667888877776666777777666554331 2211111        0011111  2247888


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 047120          137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMIDGYVKSGNIESARELFDSM  211 (634)
Q Consensus       137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m  211 (634)
                      +|+++|-++.++.         .-|..+.+.||+-.+.++++.=...     -...|+.+...++....|++|.+.|..-
T Consensus       752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888887776543         2356677888888888887654332     1347888888898888999999888765


Q ss_pred             ccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH
Q 047120          212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY  291 (634)
Q Consensus       212 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~  291 (634)
                      ...       ...+.++.+... +++...+...+++ |....-.+.+.+.+.|.-++|.+.+-+-..|..     .+..+
T Consensus       823 ~~~-------e~~~ecly~le~-f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tC  888 (1189)
T KOG2041|consen  823 GDT-------ENQIECLYRLEL-FGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTC  888 (1189)
T ss_pred             cch-------HhHHHHHHHHHh-hhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHH
Confidence            432       224455555444 5555555555443 333445566777778888888777766554432     34455


Q ss_pred             HHcCChHHHHHHhhhCCCCChh
Q 047120          292 AKLGRVDIARRLFDEMPKRDVV  313 (634)
Q Consensus       292 ~~~g~~~~A~~~~~~~~~~~~~  313 (634)
                      ...++|.+|.++-+...-|.+.
T Consensus       889 v~LnQW~~avelaq~~~l~qv~  910 (1189)
T KOG2041|consen  889 VELNQWGEAVELAQRFQLPQVQ  910 (1189)
T ss_pred             HHHHHHHHHHHHHHhccchhHH
Confidence            6667777777776666544443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.99  E-value=0.35  Score=46.08  Aligned_cols=299  Identities=14%  Similarity=0.071  Sum_probs=175.1

Q ss_pred             HHHHHHHHhccccCCCCCcccHHHHHHHHHc--CCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh--ccCChHHHHHH
Q 047120           66 EFARYIFFKYHAFREKKDPFLWNAIIKTYSH--GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS--RLGLIEEGLQI  141 (634)
Q Consensus        66 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~  141 (634)
                      ..+.+.|..-++      -.-|..|-.++.-  .|+-..|..+-.+-.+ -+..|...+..++.+-.  -.|+++.|.+-
T Consensus        70 ~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~k  142 (531)
T COG3898          70 YTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKK  142 (531)
T ss_pred             HHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence            445555555431      1235565555554  4677777776665442 24566777777776544  57999999999


Q ss_pred             HHHHHHhcCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccC--
Q 047120          142 HGLLRKVAFGSDLFL--QNCLISLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIR--  214 (634)
Q Consensus       142 ~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--  214 (634)
                      |+-|..   .|....  ...|.----+.|+.+.|...-+..-.  | -...+...+...+..|+|+.|+++++.-...  
T Consensus       143 feAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v  219 (531)
T COG3898         143 FEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV  219 (531)
T ss_pred             HHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence            999976   222222  22333333567888888888777643  2 3347788899999999999999999876554  


Q ss_pred             -CCChhH--HHHHHHH--HHhcCCcHHHHHHHHhhCCC--CCchHHH-HHHHHHHhcCChHHHHHHHhhCCCCChhHHHH
Q 047120          215 -ERNLIS--WNSVLNG--YAQLKSGLQFAWQIFEKMPE--RDLISWN-SMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN  286 (634)
Q Consensus       215 -~p~~~~--~~~ll~~--~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  286 (634)
                       .++..-  -..|+.+  ......+...|.+.-.+..+  ||...-. .-..++.+.|+..++-.+++.+-+..++.--.
T Consensus       220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia  299 (531)
T COG3898         220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA  299 (531)
T ss_pred             hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence             344321  1222222  22222224445544444433  4443322 23456777888888888887776544333333


Q ss_pred             HHHHHHHcCChHHH----HHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH-cc
Q 047120          287 MIDGYAKLGRVDIA----RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA-QL  361 (634)
Q Consensus       287 l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~~  361 (634)
                      ++..+.+.|+....    .+-+..|+..+..+...+..+-...|++..|..--+...   ...|....|..+...-. ..
T Consensus       300 ~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAet  376 (531)
T COG3898         300 LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAET  376 (531)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhcc
Confidence            34444555553221    123455555666666666677777777776666665555   34666666666655543 34


Q ss_pred             CChHHHHHHHHHHHHc
Q 047120          362 GHIDKGVAIHRYLEKD  377 (634)
Q Consensus       362 ~~~~~a~~~~~~~~~~  377 (634)
                      ||-.++...+.+..+.
T Consensus       377 GDqg~vR~wlAqav~A  392 (531)
T COG3898         377 GDQGKVRQWLAQAVKA  392 (531)
T ss_pred             CchHHHHHHHHHHhcC
Confidence            6777766666666553

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.98  E-value=0.028  Score=49.07  Aligned_cols=118  Identities=22%  Similarity=0.213  Sum_probs=79.4

Q ss_pred             CCCHhHHHHHHHHHH-----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHH
Q 047120          345 HPDDASLVIVLSAIA-----QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA  419 (634)
Q Consensus       345 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  419 (634)
                      ..+..+|..++..+.     +.|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.           
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~-----------  110 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA-----------  110 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence            456667777777664     346777777888889999999999999999988764 3221 1111111           


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhHH
Q 047120          420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV-KEGLLCFELMRR  477 (634)
Q Consensus       420 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~  477 (634)
                      +-.-  ...+-+-|++++++|...|+-||..|+..+++.+.+.+.. .+..++.--|.+
T Consensus       111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            1111  1234577899999999999999999999999998877653 334444444444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.98  E-value=0.19  Score=46.35  Aligned_cols=63  Identities=10%  Similarity=0.007  Sum_probs=33.9

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH----HHHHHHHHHccCChHHHHHHHHHHHHc
Q 047120          312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS----LVIVLSAIAQLGHIDKGVAIHRYLEKD  377 (634)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~  377 (634)
                      ...+-.....+...|++++|++.|+.+...   .|+...    .-.+..++.+.++++.|...+++.++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            333334445556667777777777777643   333211    123444555666666666666655553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.97  E-value=0.19  Score=42.61  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             chhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 047120          382 NGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD---DITFTG  454 (634)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~  454 (634)
                      +...-..|..++.+.|+..+|...|++..    ..|....-.+..+....+++..|...++++.+..  |+   +.+...
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll  165 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLL  165 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHH
Confidence            33333334444444444444444444332    1234444444444444455555555555544431  21   122333


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHH
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR  505 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  505 (634)
                      +.+.+...|.+.+|...|+.+..-   -|+...-......+.++|+.++|.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence            444455555555555555555441   233333333334445555444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.96  E-value=0.0079  Score=55.90  Aligned_cols=102  Identities=6%  Similarity=0.017  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLL  524 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  524 (634)
                      .|...+....+.|++++|...|+.+.+.+.-.+- ...+..++.+|...|++++|...|+.+ ...|+    ...+..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            4555444445667888888888887764321110 235667778888888888888888877 22233    34555566


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      ..+...|+.++|...|+++++..|.+..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            6677889999999999999998887653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.90  E-value=0.0028  Score=45.99  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             HHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120          493 DILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  556 (634)
                      ..|.+.+++++|.++++.+ ...|+ ...|......+...|++++|.+.++++++..|.++.....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            5677888888888888887 44454 5566677777888888888888888888888877655433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.086  Score=47.21  Aligned_cols=138  Identities=13%  Similarity=0.018  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCchhHHH
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-----FSLNGKHGV  387 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~  387 (634)
                      .+.+.++..+.-.|.+.-.+..+++..+. .-.-++.....+++...+.||.+.|..+++...+..     ......+..
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            34556677777788888889999999875 334466777888888889999999999999777643     333333334


Q ss_pred             HHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT  453 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  453 (634)
                      .....|.-.+++..|...|.++..   .++..-|.-.-+..-.|+..+|++.++.|...  .|...+-+
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            444556778889999999988873   35556666666666678999999999999875  56554433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.82  E-value=0.044  Score=49.19  Aligned_cols=49  Identities=10%  Similarity=0.059  Sum_probs=35.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHH
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDAR  571 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~  571 (634)
                      +...|.+.|.+..|..-++.+++..|+.+.   ....++..|.+.|..+.+.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            445578888899999999999888887655   4566777788888877443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.036  Score=50.99  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=80.6

Q ss_pred             CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc---CCHHHHHHHHHhC-CCCCCH-HH
Q 047120          446 EP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA---GHIEAARNLIEDM-PMEPND-VI  519 (634)
Q Consensus       446 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p~~-~~  519 (634)
                      .| |...|..|...|...|+++.|...|..+.+..|-  +...+..+..++...   ....++.++|+++ ..+|+. .+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            44 4679999999999999999999999999885443  455565666655433   2456788999998 556664 45


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       520 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      ...|...+...|++.+|...++.+++..|.+..
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            566667789999999999999999999987654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.76  E-value=0.0016  Score=48.05  Aligned_cols=62  Identities=10%  Similarity=0.165  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccC----CCC---CchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSN---SSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+++.+...|...|++++|+..++++++..    +..   ..++..++.+|...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            466677777777888888888877777542    221   33677788888888888888888877643

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.16  Score=45.56  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----cccChhHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK----LEPELQHYGCM  491 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l  491 (634)
                      ..+.++......|.+.-.+..+.+.++.....++.....|.+.-.+.|+.+.|..+|+...+..+    +.-...+....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44566777777788888888888888865555677788888888899999999999987765322    22222222233


Q ss_pred             HHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          492 VDILGRAGHIEAARNLIEDMP-MEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      ...|.-++++..|...++++. .+| |+...|.-.-...-.|+...|++..+.++++.|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            344566677778888887772 222 33333433333444678888888888888777653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.69  E-value=0.04  Score=43.59  Aligned_cols=140  Identities=11%  Similarity=0.098  Sum_probs=89.7

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA  504 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  504 (634)
                      .-.|..++..++..+....   .+..-++.++--....-+-+-..++++.+-+.+    |.          ..+|+....
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHHH
Confidence            4467788888888887752   345567777766666666666666666665522    21          234444444


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       505 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      ...+-.++  .+.......+......|.-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.++++++=+.|++
T Consensus        76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44444443  344455667778889999999999999998877889999999999999999999999999999998874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.67  E-value=0.023  Score=49.59  Aligned_cols=96  Identities=18%  Similarity=0.327  Sum_probs=66.8

Q ss_pred             HHHHhc--cCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 047120          404 KVFEQI--EDGSVDHWNAMINGLAIH-----GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA--------------  462 (634)
Q Consensus       404 ~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------------  462 (634)
                      ..|+..  ...+-.+|..++..|.+.     |..+=....+..|.+-|+.-|..+|+.|+..+=+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            344444  345666666677666543     55666667788888889888899999998877542              


Q ss_pred             --CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          463 --GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       463 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                        .+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus       115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence              234567777777777 6777777777777777776664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.67  E-value=0.71  Score=44.98  Aligned_cols=132  Identities=17%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH-HHHH
Q 047120          415 DHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-GCMV  492 (634)
Q Consensus       415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~  492 (634)
                      .+|-..+..-.+..-.+.|..+|-+..+.| +.++...++.++.-++ .|+...|.++|+.-...   .||...| +..+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl  473 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL  473 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence            355666666666667777888888888777 4566667777776554 56667777777765542   3444443 3455


Q ss_pred             HHHhccCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          493 DILGRAGHIEAARNLIEDM--PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      ..+.+.++-+.|..+|+..  .+..+  ...|..++.--..-|++..+..+-+++.+..|..
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            6667778888888888755  22233  4577777777777788877777777777777653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.64  E-value=0.46  Score=42.62  Aligned_cols=61  Identities=13%  Similarity=0.128  Sum_probs=31.8

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKD  377 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  377 (634)
                      .....+...|++.+|+..|+.+.....-.|- ......++.++-+.|+++.|...++..++.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445556667777777777777654211111 123444555556666666666666665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.56  E-value=0.0029  Score=46.60  Aligned_cols=59  Identities=10%  Similarity=0.165  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          487 HYGCMVDILGRAGHIEAARNLIEDM-----PME---PN-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       487 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      +|+.+...|.+.|++++|++.+++.     ...   |+ ..++..+...+...|++++|++.++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3455555555555555555555544     011   22 33566666667777777777777777654

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.51  E-value=0.013  Score=57.45  Aligned_cols=63  Identities=6%  Similarity=-0.153  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch---HHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS---YVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ...++.+..+|.+.|++++|+..++++++++|+++..   |++++.+|..+|+.++|++.++++.+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444422   44444444444444444444444444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.51  E-value=0.93  Score=44.34  Aligned_cols=139  Identities=12%  Similarity=0.146  Sum_probs=84.2

Q ss_pred             HHhccCchHHHHHHHHHHHhCCCC-c----hhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHH-
Q 047120           21 LRKCKTLNDVNQIHARMITTGFIK-N----THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY-   94 (634)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-   94 (634)
                      |+.-++..+++.|+..+.+..-.. .    -..-++++++|.-.+-    +.....+..+.+.  .| ...|-.+..++ 
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nl----d~Me~~l~~l~~~--~~-~s~~l~LF~~L~   88 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNL----DLMEKQLMELRQQ--FG-KSAYLPLFKALV   88 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhH----HHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence            455566777777777777654222 1    1345788999876553    4444444444322  23 23344444433 


Q ss_pred             -HcCCCcchHHHHHHHHHHC--CCCC---Cc---------chHHHHHHHHhccCChHHHHHHHHHHHHhcCC----CChh
Q 047120           95 -SHGLDPKEALVMFCLMLDN--GVSV---DK---------FSASLVLKACSRLGLIEEGLQIHGLLRKVAFG----SDLF  155 (634)
Q Consensus        95 -~~~g~~~~A~~~~~~m~~~--g~~p---~~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~  155 (634)
                       -+.+++++|++.+....++  +..|   |.         .-=+..+.++...|.+.+++.+++++...=++    -+..
T Consensus        89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d  168 (549)
T PF07079_consen   89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD  168 (549)
T ss_pred             HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence             2568899999888777654  3222   11         11133455677899999999999888765443    6788


Q ss_pred             HHHHHHHHHHh
Q 047120          156 LQNCLISLYVR  166 (634)
Q Consensus       156 ~~~~li~~~~~  166 (634)
                      +|+.++-++++
T Consensus       169 ~yd~~vlmlsr  179 (549)
T PF07079_consen  169 MYDRAVLMLSR  179 (549)
T ss_pred             HHHHHHHHHhH
Confidence            88887766654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=0.4  Score=42.67  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=44.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccC----CCCCchHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDMP-------MEPND-VIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSNSSSYV  555 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~  555 (634)
                      +..+...|.+...+++|-..+.+-+       .-|+. ..|...+-.+....|+..|++.++.-.+..    |.+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            4444555666666666655544431       11222 234444445555667777777776654443    34444555


Q ss_pred             HHHHHHhcCCCchHHHHHH
Q 047120          556 LLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       556 ~l~~~~~~~g~~~~A~~~~  574 (634)
                      .|...| ..|+.+++.+++
T Consensus       233 nLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHH
Confidence            555554 356666555544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.028  Score=53.82  Aligned_cols=95  Identities=7%  Similarity=0.022  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      .++..|.-+|.+.+++.+|+....+. .. ++|.....--..+|...|+++.|+..|+++++..|.|-.+-..|+.+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45778889999999999999998887 33 45677777788899999999999999999999999999999999888777


Q ss_pred             CCCchH-HHHHHHHHHhC
Q 047120          564 LGMWND-ARRVRSMMKER  580 (634)
Q Consensus       564 ~g~~~~-A~~~~~~~~~~  580 (634)
                      ...+.+ ..++|.+|-..
T Consensus       338 ~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            665554 58888888543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.43  E-value=0.077  Score=49.77  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCccc----ChhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCCHH-----
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEP----ELQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPNDV-----  518 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-----  518 (634)
                      +..++...+.++++++.|+.+.+...-..    ...++..|...|.+..++++|.-+..++       +++.=..     
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            44444445555555555555443111111    1233555555555555555554443332       1111011     


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC----CchHHHHHHHHhcCCCchHHHHHHHH
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMD--SSN----SSSYVLLSNMFAGLGMWNDARRVRSM  576 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  576 (634)
                      ....+.-++...|.+..|.+..+++.++.  ..|    ......++++|-..|+.+.|+.-++.
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence            11222334455555555555555554432  111    11233455555555555555554443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.39  E-value=0.027  Score=44.34  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=69.3

Q ss_pred             HHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC----chHHHHHHHHhcCCC
Q 047120          493 DILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS----SSYVLLSNMFAGLGM  566 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~  566 (634)
                      -++...|+.+.|++.|.+. . .+.....|+.-..++.-.|+.++|..-+++++++..+..    ..|..-+.+|...|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3566788888888888776 2 334577888888888888888888888888888864332    256667778888888


Q ss_pred             chHHHHHHHHHHhCCCc
Q 047120          567 WNDARRVRSMMKERNLK  583 (634)
Q Consensus       567 ~~~A~~~~~~~~~~~~~  583 (634)
                      -+.|..-|+...+.|-+
T Consensus       131 dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGSK  147 (175)
T ss_pred             hHHHHHhHHHHHHhCCH
Confidence            88898888888777653

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.28  E-value=1.6  Score=44.50  Aligned_cols=382  Identities=11%  Similarity=0.034  Sum_probs=199.6

Q ss_pred             HHHHHHHHhccccCCCCCc-ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh-ccCChHHHHHHHH
Q 047120           66 EFARYIFFKYHAFREKKDP-FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS-RLGLIEEGLQIHG  143 (634)
Q Consensus        66 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~  143 (634)
                      ..++.+++.+...  .|.. .-|-....-=.+-|..+.+..+|++-.. |++.+...|...+.-+. ..|+.+.....|+
T Consensus        62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe  138 (577)
T KOG1258|consen   62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE  138 (577)
T ss_pred             HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            5566666665522  3333 2344555555566788888888888776 56656666665555444 5567777777777


Q ss_pred             HHHHh-cCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHh---CC------ChHHHHHHHhhCc
Q 047120          144 LLRKV-AFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK---SG------NIESARELFDSMP  212 (634)
Q Consensus       144 ~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g------~~~~A~~~~~~m~  212 (634)
                      .+... |.. .....|...|..-..++++.....+++++.+-....|+....-|.+   ..      ..+++.++-....
T Consensus       139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~  218 (577)
T KOG1258|consen  139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA  218 (577)
T ss_pred             HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence            77653 322 2344677777777777888888888888766444444444333322   11      1222222211111


Q ss_pred             cC------CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC--------
Q 047120          213 IR------ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------  278 (634)
Q Consensus       213 ~~------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------  278 (634)
                      ..      .+........+.-.......++.+...+.+...       .--..+.......+....++.-.+        
T Consensus       219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp  291 (577)
T KOG1258|consen  219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP  291 (577)
T ss_pred             hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-------HHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence            00      111111111111111111112222221111100       000112222223333333333332        


Q ss_pred             ---CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHH
Q 047120          279 ---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV  352 (634)
Q Consensus       279 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  352 (634)
                         ++..+|...+..-.+.|+.+.+.-+|++..-|   -...|-..+.-....|+.+-|-.++....+- . .|+.....
T Consensus       292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~-~k~~~~i~  369 (577)
T KOG1258|consen  292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-H-VKKTPIIH  369 (577)
T ss_pred             ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-c-CCCCcHHH
Confidence               35577888888888889999998888887754   2345655555555668888887777666533 2 22222222


Q ss_pred             HHH-HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH---HHHHhccC--CChhHHHHHHHH---
Q 047120          353 IVL-SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI---KVFEQIED--GSVDHWNAMING---  423 (634)
Q Consensus       353 ~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~li~~---  423 (634)
                      .+- .-+-..|+++.|..+++.+...- +.-..+-..-+....+.|+.+.+.   .++....+  .+....+.+.--   
T Consensus       370 L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r  448 (577)
T KOG1258|consen  370 LLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR  448 (577)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence            222 22345678888888888887754 222333334456667777777777   44433331  222222222222   


Q ss_pred             --HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120          424 --LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH  461 (634)
Q Consensus       424 --~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  461 (634)
                        +.-.++.+.|..++.++.+. ..++...|..++..+..
T Consensus       449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~  487 (577)
T KOG1258|consen  449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI  487 (577)
T ss_pred             HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence              22346677777777777764 34444555555554443

>PRK11906 transcriptional regulator; Provisional

Probab=96.25  E-value=0.069  Score=52.56  Aligned_cols=143  Identities=9%  Similarity=0.056  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120          429 LGELAFDLLMEMER-LSIEPD-DITFTGLLNACAH---------AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR  497 (634)
Q Consensus       429 ~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  497 (634)
                      ..+.|+.+|.+... ..+.|+ ...|..+..++..         .....+|.+.-+.+.+.  -+.|......+..++..
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence            35677778888772 224666 3466666555432         22344555555555542  12345555566666666


Q ss_pred             cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch--HHHHHHHHhcCCCchHHHHH
Q 047120          498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS--YVLLSNMFAGLGMWNDARRV  573 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~  573 (634)
                      .|+++.|...|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|....+  .-..+++|+..+ .++|+++
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~  429 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL  429 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence            77777777777776 55566 3455555556666777777777777777777754432  223334555443 4555555


Q ss_pred             H
Q 047120          574 R  574 (634)
Q Consensus       574 ~  574 (634)
                      +
T Consensus       430 ~  430 (458)
T PRK11906        430 Y  430 (458)
T ss_pred             H
Confidence            4

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.18  E-value=1.1  Score=49.25  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL  495 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  495 (634)
                      .|.+...-+.....+++|.-.|+..-+         ..-.+.+|...|+|.+|..+..++..  +-.--..+-..|+.-+
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence            344444444445555555544443321         11234455555566655555554432  1000011123455555


Q ss_pred             hccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120          496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       496 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                      ...+++-+|-++..+....|..     .+..+++...+++|.++....
T Consensus      1010 ~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence            5666666666665554322221     122234444555555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.17  E-value=0.017  Score=48.80  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+...++..+...|++++|.+.+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            35556777788899999999999999999999999999999999999999999999988843

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.16  E-value=0.089  Score=42.97  Aligned_cols=89  Identities=13%  Similarity=0.109  Sum_probs=57.9

Q ss_pred             HHHHhccCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhc
Q 047120          492 VDILGRAGHIEAARNLIEDM----PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAG  563 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~  563 (634)
                      .....+.|++++|.+.|+.+    +..|- ...-..|+.++.+.|++++|...+++-++++|.+|.   +++..+.++.+
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            34455677788888877777    22222 335566777888888888888888888888887766   34444444444


Q ss_pred             CCC---------------chHHHHHHHHHHhC
Q 047120          564 LGM---------------WNDARRVRSMMKER  580 (634)
Q Consensus       564 ~g~---------------~~~A~~~~~~~~~~  580 (634)
                      +..               ..+|...|+++.+.
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            433               45666666666443

>PRK11906 transcriptional regulator; Provisional

Probab=95.97  E-value=0.4  Score=47.42  Aligned_cols=139  Identities=15%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhcc---CCC---hhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047120          399 IENAIKVFEQIE---DGS---VDHWNAMINGLAIH---------GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG  463 (634)
Q Consensus       399 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  463 (634)
                      .+.|+.+|.+..   +.|   ...|..+..++...         .+..+|.++.++..+.+ .-|......+..+....+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            456777787776   334   33555555444332         12445666666666653 335667777777777777


Q ss_pred             CHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHH
Q 047120          464 LVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV---IWRTLLSACRNYENLNVGEP  538 (634)
Q Consensus       464 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~a~~  538 (634)
                      +++.|...|+.+...   .|+ ...|......+.-.|+.++|.+.+++. ...|...   .....+..|+. ..++.|++
T Consensus       353 ~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~  428 (458)
T PRK11906        353 QAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK  428 (458)
T ss_pred             chhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence            788888888887653   454 445666666677788888888888874 6566533   22223334544 35566666


Q ss_pred             HHHH
Q 047120          539 VAKH  542 (634)
Q Consensus       539 ~~~~  542 (634)
                      +|-+
T Consensus       429 ~~~~  432 (458)
T PRK11906        429 LYYK  432 (458)
T ss_pred             HHhh
Confidence            6654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.93  E-value=1.3  Score=40.45  Aligned_cols=85  Identities=18%  Similarity=0.199  Sum_probs=40.8

Q ss_pred             HhccCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHH
Q 047120          495 LGRAGHIEAARNLIEDM-PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR  571 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  571 (634)
                      +...++.+.|...+.+. ...++  ...+..+...+...++++.+...+..+....|.....+..++..+...|.++++.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL  256 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence            34445555555555444 22222  3444444445555555555555555555555543444444444444444455555


Q ss_pred             HHHHHHHh
Q 047120          572 RVRSMMKE  579 (634)
Q Consensus       572 ~~~~~~~~  579 (634)
                      ..+.+...
T Consensus       257 ~~~~~~~~  264 (291)
T COG0457         257 EALEKALE  264 (291)
T ss_pred             HHHHHHHH
Confidence            55544433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.023  Score=54.36  Aligned_cols=66  Identities=11%  Similarity=0.064  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..++..|...|.+.+++..|++...++++.+|+|+-..+.-+.+|...|+++.|+..|+++.+...
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence            346777888899999999999999999999999999999999999999999999999999987654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.80  E-value=0.7  Score=45.90  Aligned_cols=98  Identities=10%  Similarity=0.119  Sum_probs=46.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 047120          454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-M-EPN--DVIWRTLLSACRN  529 (634)
Q Consensus       454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~~~~~  529 (634)
                      .+..++-+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-. + -|.  ...|+..+-....
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa  343 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA  343 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence            34444445555555555555555422211123344455555555666666555555541 1 122  2234433322222


Q ss_pred             cCC---------------hhHHHHHHHHHhccCCCCC
Q 047120          530 YEN---------------LNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       530 ~g~---------------~~~a~~~~~~~~~~~p~~~  551 (634)
                      .|+               -..|.+.+.++++.+|-.|
T Consensus       344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            222               1235677788887776444

The molecular function of this protein is uncertain.

>PRK09687 putative lyase; Provisional

Probab=95.70  E-value=2  Score=40.72  Aligned_cols=79  Identities=11%  Similarity=0.130  Sum_probs=33.8

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCc----hHHHHHHHHHHhcCCCCCCHhHHHHH
Q 047120          279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS----MKALEIFDNMQCELYLHPDDASLVIV  354 (634)
Q Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~m~~~~~~~p~~~~~~~l  354 (634)
                      +|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+.    .++...+..+...   .|+...-...
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A  111 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASA  111 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHH
Confidence            44444444444444444433222222222334444444445555555542    3455555554322   3444444444


Q ss_pred             HHHHHc
Q 047120          355 LSAIAQ  360 (634)
Q Consensus       355 l~~~~~  360 (634)
                      +.++..
T Consensus       112 ~~aLG~  117 (280)
T PRK09687        112 INATGH  117 (280)
T ss_pred             HHHHhc
Confidence            444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.66  E-value=1.7  Score=39.72  Aligned_cols=198  Identities=14%  Similarity=0.094  Sum_probs=132.9

Q ss_pred             HhHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--CCh-hHHHHHHH-
Q 047120          348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSV-DHWNAMIN-  422 (634)
Q Consensus       348 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~-  422 (634)
                      ...+......+...+++..+...+...... ........+......+...+++..+...+.....  ++. ........ 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            345555555566666666666666555542 2334445555566666666777777777776653  221 22333333 


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhc
Q 047120          423 GLAIHGLGELAFDLLMEMERLSIEP----DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGR  497 (634)
Q Consensus       423 ~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  497 (634)
                      .+...|+++.|...+.+...  ..|    ....+......+...++.+.+...+......  ... ....+..+...+..
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  214 (291)
T COG0457         139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK  214 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence            68888999999999998855  333    2334444555577788999999999988763  222 35667888888999


Q ss_pred             cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      .++++.|...+... ...|+ ...+..+...+...|..+.+...+++.++..|.
T Consensus       215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999887 44554 445555555555777899999999999998887

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.62  E-value=0.072  Score=48.45  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=53.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSN  559 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  559 (634)
                      |+.-++ +.+.|++..|...|... ..-|+    ...+.-|...+...|++++|...|..+.+..|.+   |+.+.-|+.
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            443333 34455566666666554 11111    2233446666667777777777777776665443   445666666


Q ss_pred             HHhcCCCchHHHHHHHHHHhC
Q 047120          560 MFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       560 ~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +..+.|+.++|..+|+++.+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            777777777777777766544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.57  E-value=0.19  Score=40.63  Aligned_cols=49  Identities=8%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       445 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      ..|+..++..++.+|+..+++..|.++.+...+.++++.+..+|..|++
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            4566666666666666666666666666666666666555555655554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.53  E-value=0.11  Score=47.42  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=53.7

Q ss_pred             ccCCHHHHHHHHHHhHHhcCcc-cChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChh
Q 047120          461 HAGLVKEGLLCFELMRRIHKLE-PELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN-DVIWRTLLSACRNYENLN  534 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~  534 (634)
                      +.|++..|...|....+.+.-. -....+-.|..++...|++++|..+|..+    +-.|- +..+.-|.....+.|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            4455666666666655522110 01223445666666677777666666655    21222 345555666667777777


Q ss_pred             HHHHHHHHHhccCCCCCch
Q 047120          535 VGEPVAKHLIGMDSSNSSS  553 (634)
Q Consensus       535 ~a~~~~~~~~~~~p~~~~~  553 (634)
                      +|...|+++++..|..+.+
T Consensus       233 ~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         233 EACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHH
Confidence            7777777777777766544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.51  E-value=5.2  Score=44.40  Aligned_cols=26  Identities=19%  Similarity=0.070  Sum_probs=15.0

Q ss_pred             HHHHHHHHHcCC--CcchHHHHHHHHHH
Q 047120           87 WNAIIKTYSHGL--DPKEALVMFCLMLD  112 (634)
Q Consensus        87 ~~~li~~~~~~g--~~~~A~~~~~~m~~  112 (634)
                      .-.+|.+|++.+  ..+.|+....+...
T Consensus       793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  793 NLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            345667777665  44555555555543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.42  E-value=0.42  Score=40.21  Aligned_cols=70  Identities=29%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCcccChhH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRR----IHKLEPELQH  487 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~  487 (634)
                      +...++..+...|++++|..+++.+...  .| +...|..++.++...|+..+|.++|+.+.+    ..|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            4455666677778888888888877764  44 455777788888888888888877776643    3466666554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.76  Score=42.44  Aligned_cols=122  Identities=12%  Similarity=0.089  Sum_probs=81.6

Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT---LLSACRNYENLN  534 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~  534 (634)
                      .....|++.+|...|+.+....  +-+...-..++.+|...|+.+.|..++..++.+-....+..   -+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            4556788888888888776631  22345566778888888888888888888854433333333   233344444444


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +... ++.-...+|++...-..++..|...|+.++|.+.+-.+.+++.
T Consensus       221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            4333 3344567888888888899999999999988888877765543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.40  E-value=1.7  Score=42.41  Aligned_cols=67  Identities=18%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             HHHHcCChHHHHHHhhhCCCC-------ChhhHHHHHHHHHH---cCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 047120          290 GYAKLGRVDIARRLFDEMPKR-------DVVACNAMMGGYVR---NGYSMKALEIFDNMQCELYLHPDDASLVIVLSA  357 (634)
Q Consensus       290 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~  357 (634)
                      .|....+++...++++.+...       ...+-.....++.+   .|+.++|++++..+... .-.++..+|..+...
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLGRI  226 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHHHH
Confidence            344445555555555554432       11112223334444   55666666666553322 233444455444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.39  E-value=0.42  Score=39.15  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIEP--DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI  494 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (634)
                      +..-.....+.|++++|.+.|+.+...-...  ....-..++.++.+.+++++|...++...+.+.-.|++. |.....+
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~g   91 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRG   91 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHH
Confidence            3344445556677777777777776652111  134556666777777777777777777766544444422 3333333


Q ss_pred             HhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          495 LGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      +..-...+.   .+..+ +.+             ...+....|...|+.+++..|+++-
T Consensus        92 L~~~~~~~~---~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   92 LSYYEQDEG---SLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHhhh---HHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence            332221111   11111 111             1123356788888999988888654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=4.5  Score=43.05  Aligned_cols=51  Identities=12%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             HHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM  438 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~  438 (634)
                      -++..+.+..+++.+..+.+...+.++..|..++..+++.+..+...+...
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~  760 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVY  760 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHH
Confidence            466677777888888888888887788888888888888875544444333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.34  E-value=2.1  Score=38.85  Aligned_cols=57  Identities=9%  Similarity=0.132  Sum_probs=41.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      +..-|.+.|.+..|..-++++++..|..+.   .+..+..+|...|..++|...-+-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            344577888888888888888888766555   445556678888888888877665543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=1.6  Score=40.35  Aligned_cols=155  Identities=12%  Similarity=0.049  Sum_probs=102.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      .......|++.+|..+|....... .-+...-..+..++...|+.+.|..++..+..... .........-+..+.+...
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence            345567788888888888887752 22345667778888899999999999888754210 1111112234555566555


Q ss_pred             HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCCchHHHHHHHHhcCCCchH-HHHHHHH
Q 047120          501 IEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMD--SSNSSSYVLLSNMFAGLGMWND-ARRVRSM  576 (634)
Q Consensus       501 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~  576 (634)
                      ..+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+  -.+...-..+..++.-.|.-+. +.++-++
T Consensus       219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk  298 (304)
T COG3118         219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK  298 (304)
T ss_pred             CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            555555555553356 55666778888899999999998888887765  4567788888888887775554 3333333


Q ss_pred             H
Q 047120          577 M  577 (634)
Q Consensus       577 ~  577 (634)
                      |
T Consensus       299 L  299 (304)
T COG3118         299 L  299 (304)
T ss_pred             H
Confidence            3

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.08  E-value=0.92  Score=37.79  Aligned_cols=83  Identities=18%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 047120           51 KLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS  130 (634)
Q Consensus        51 ~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  130 (634)
                      .+|..+...+.+   ......++.+...+. .+...+|.++..|++. +..+.++.++.      ..+......+++.|.
T Consensus        12 ~vv~~~~~~~~~---~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~   80 (140)
T smart00299       12 EVVELFEKRNLL---EELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHhCCcH---HHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHH
Confidence            444455444444   555555555544432 3455566666666544 22333333331      123344444555555


Q ss_pred             ccCChHHHHHHHHH
Q 047120          131 RLGLIEEGLQIHGL  144 (634)
Q Consensus       131 ~~~~~~~a~~~~~~  144 (634)
                      +.+-++++..++..
T Consensus        81 ~~~l~~~~~~l~~k   94 (140)
T smart00299       81 KAKLYEEAVELYKK   94 (140)
T ss_pred             HcCcHHHHHHHHHh
Confidence            55555555555544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.98  E-value=1.1  Score=46.01  Aligned_cols=161  Identities=14%  Similarity=0.075  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCcccChh
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD-----ITFTGLLNACA----HAGLVKEGLLCFELMRRIHKLEPELQ  486 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~  486 (634)
                      ...++....-.|+-+.+++.+.+..+.+ +.-..     ..|...+..++    .....+.|.++++.+.+.   -|+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence            3344455555566666766666654422 11111     12333333332    245778888888888764   45544


Q ss_pred             HHH-HHHHHHhccCCHHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH-H
Q 047120          487 HYG-CMVDILGRAGHIEAARNLIEDMP-M-----EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL-S  558 (634)
Q Consensus       487 ~~~-~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~  558 (634)
                      .|. .-.+.+...|+.++|++.|+++- .     +.....+--+...+....++++|...+.++.+.+.-+...|..+ +
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            443 34566778888999999888651 1     12234556667777888899999999999888765544444443 4


Q ss_pred             HHHhcCCCc-------hHHHHHHHHHHhC
Q 047120          559 NMFAGLGMW-------NDARRVRSMMKER  580 (634)
Q Consensus       559 ~~~~~~g~~-------~~A~~~~~~~~~~  580 (634)
                      -++...|+.       ++|.+++++....
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            456678888       8888888887554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.84  E-value=1.6  Score=44.81  Aligned_cols=158  Identities=13%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120          317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-----SLVIVLSAIA----QLGHIDKGVAIHRYLEKDQFSLNGKHGV  387 (634)
Q Consensus       317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~  387 (634)
                      .++....=.|+-+.+++.+.+..+..++.-...     .|...+..+.    ...+.+.+.+++..+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            344444445666666666666554433333222     2223333222    244667777777777764  24433333


Q ss_pred             -HHHHHhHhcCCHHHHHHHHHhccCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 047120          388 -ALIDMYSKCGSIENAIKVFEQIEDG-------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA-  458 (634)
Q Consensus       388 -~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-  458 (634)
                       .-...+...|++++|++.|++....       ....+--+.-.+....++++|.+.|.++.+.. ..+..+|..+..+ 
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence             3356677778888888888865421       22345556667778889999999999988753 2344455555443 


Q ss_pred             HhccCCH-------HHHHHHHHHhHH
Q 047120          459 CAHAGLV-------KEGLLCFELMRR  477 (634)
Q Consensus       459 ~~~~g~~-------~~a~~~~~~~~~  477 (634)
                      +...|+.       ++|..++.++..
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHH
Confidence            3455666       777777776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK15331 chaperone protein SicA; Provisional

Probab=94.84  E-value=0.74  Score=38.73  Aligned_cols=86  Identities=9%  Similarity=-0.042  Sum_probs=41.8

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120          423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       423 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  502 (634)
                      -+...|++++|..+|+-+...+. -+..-+..|..++-..+++++|+..|..+... . ..|+..+-....+|...|+.+
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence            34455566666666555554321 12233344444445556666666665555431 1 122222333455566666666


Q ss_pred             HHHHHHHhC
Q 047120          503 AARNLIEDM  511 (634)
Q Consensus       503 ~A~~~~~~~  511 (634)
                      .|...|+..
T Consensus       123 ~A~~~f~~a  131 (165)
T PRK15331        123 KARQCFELV  131 (165)
T ss_pred             HHHHHHHHH
Confidence            666655554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.76  E-value=0.067  Score=31.47  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      .|..+...+...|++++|++.++++++++|.+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45566666777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.73  E-value=0.049  Score=32.13  Aligned_cols=32  Identities=9%  Similarity=0.061  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      .+|..++..+...|++++|+..++++++++|.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35666777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.61  E-value=0.35  Score=39.17  Aligned_cols=47  Identities=28%  Similarity=0.411  Sum_probs=24.9

Q ss_pred             CcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 047120          480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWRTLLSA  526 (634)
Q Consensus       480 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~  526 (634)
                      ...|+..+..+++.+|+..|++..|+++++..    +++-+...|..|+.-
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34455555555555555555555555555443    344445555555543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.58  E-value=2.7  Score=36.91  Aligned_cols=163  Identities=13%  Similarity=0.111  Sum_probs=88.5

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM  491 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  491 (634)
                      -+..||-+.--+...|+++.|.+.|+...+.  .|. ..+...-.-++.-.|++.-|.+=+-..-..   .|+...-...
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LW  172 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLW  172 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHHHH
Confidence            3457787777788888888888888888764  343 223222222344567777777655444331   2332221112


Q ss_pred             HHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHHHHHHHHhcC
Q 047120          492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-------SSSYVLLSNMFAGL  564 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~  564 (634)
                      +..-.+.-++.+|..-+.+--...|..-|...+-.+.- |.+.+ +.+++++.....++       ..+|..|+.-+...
T Consensus       173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~  250 (297)
T COG4785         173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL  250 (297)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence            22223445666776544332112344444433333221 22111 22333333332222       34788888999999


Q ss_pred             CCchHHHHHHHHHHhCCC
Q 047120          565 GMWNDARRVRSMMKERNL  582 (634)
Q Consensus       565 g~~~~A~~~~~~~~~~~~  582 (634)
                      |+.++|..+|+-....++
T Consensus       251 G~~~~A~~LfKLaiannV  268 (297)
T COG4785         251 GDLDEATALFKLAVANNV  268 (297)
T ss_pred             ccHHHHHHHHHHHHHHhH
Confidence            999999999988866554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.57  E-value=1.1  Score=41.99  Aligned_cols=114  Identities=8%  Similarity=0.005  Sum_probs=59.1

Q ss_pred             hcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHHH
Q 047120          395 KCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG----LLNACAHAGLVKE  467 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~  467 (634)
                      ..|+..+|-..++++.+   .|..+++-.=.++.-.|+.+.-...++++... ..||...|..    +.-++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            34555555555555542   35555555556666666666666666665543 2344322222    2223345666666


Q ss_pred             HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120          468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      |.+.-++....+  +.|...-.++...+...|++.++.++..+-
T Consensus       194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            666655554421  223333445555566666666666666554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.35  Score=45.11  Aligned_cols=160  Identities=11%  Similarity=-0.068  Sum_probs=117.6

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH----HHHHhccCC
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM----VDILGRAGH  500 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~  500 (634)
                      ...|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++..  ...+|...|..+    .-++..+|-
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            4578899999999999885 444666888888899999999999988888875  345666555444    344568999


Q ss_pred             HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHhcCCCchHHHHHH
Q 047120          501 IEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       501 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~  574 (634)
                      +++|++.-++. .+. .|...-.++...+...|++.++.++.++--..=..    -...|-+.+..+...+.++.|.++|
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999987 444 45667777888888899999999888775322111    1235666777788889999999999


Q ss_pred             HHHHhCCCccCCc
Q 047120          575 SMMKERNLKKLPG  587 (634)
Q Consensus       575 ~~~~~~~~~~~~~  587 (634)
                      ++-.-....++.+
T Consensus       271 D~ei~k~l~k~Da  283 (491)
T KOG2610|consen  271 DREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHhhccch
Confidence            8765444444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.41  E-value=3.7  Score=39.10  Aligned_cols=162  Identities=10%  Similarity=-0.040  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CCchhH
Q 047120          314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD---ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-----SLNGKH  385 (634)
Q Consensus       314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~  385 (634)
                      .|..+.+++-+..++.+++.+-+.-....|..|..   ....++..+....+.++++.+.|+.+.+...     .....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            45555666666666666666666555444444421   2223344555566667777777665544211     112356


Q ss_pred             HHHHHHHhHhcCCHHHHHHHHHhcc-------CCChh------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 047120          386 GVALIDMYSKCGSIENAIKVFEQIE-------DGSVD------HWNAMINGLAIHGLGELAFDLLMEMER----LSIEPD  448 (634)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~  448 (634)
                      +..|...|.+..++++|.-+..+..       -.|..      +...|.-++...|+...|.+.-++..+    .|-.|.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            6667777777777776655544332       11221      222334455555666555555555432    222221


Q ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120          449 -DITFTGLLNACAHAGLVKEGLLCFELM  475 (634)
Q Consensus       449 -~~~~~~ll~~~~~~g~~~~a~~~~~~~  475 (634)
                       ......+...|-..|+.+.|..-|+.+
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence             113334444555566666665555543

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.34  E-value=2.6  Score=35.02  Aligned_cols=44  Identities=7%  Similarity=0.056  Sum_probs=23.0

Q ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 047120           87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR  131 (634)
Q Consensus        87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  131 (634)
                      -..+|..+...+.+.....+++.+...+ ..+...++.++..+++
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~   53 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence            4455555555555555555555555544 2344445555555554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.30  E-value=0.15  Score=43.70  Aligned_cols=104  Identities=13%  Similarity=0.032  Sum_probs=56.1

Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCcccC---hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120          456 LNACAHAGLVKEGLLCFELMRRIHKLEPE---LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNY  530 (634)
Q Consensus       456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~  530 (634)
                      .+-+.+.|++++|..-|..+.....-.+.   ...|..-.-++.+.+.++.|++-..+. .+.|. .....--..+|.+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            44456677777777777766653111111   123444445566666676666655554 33443 22222233456666


Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSN  559 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  559 (634)
                      ..+++|+.-|+++.+.+|....+--..+.
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            67777777777777777665444433333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.29  E-value=2.1  Score=43.37  Aligned_cols=130  Identities=16%  Similarity=0.116  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHH
Q 047120          253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL  332 (634)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  332 (634)
                      .+.++.-+.+.|..+.|+++...     .   ..-.+...++|+++.|.++.+++.  +...|..|.....+.|+.+-|.
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe  367 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE  367 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence            44555556666667766665542     1   234455667788888877776665  4557888888888888888888


Q ss_pred             HHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 047120          333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ  408 (634)
Q Consensus       333 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  408 (634)
                      +.|.+..          -+..++-.+.-.|+.+...++.+.....|-      ++....++...|++++..+++.+
T Consensus       368 ~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  368 ECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            8887765          245566666777777777777766666552      23334444555666666655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.12  E-value=9.2  Score=40.50  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCChh
Q 047120          253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVV  282 (634)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  282 (634)
                      -..|+..|...+++..|++++-...++++.
T Consensus       508 ~e~La~LYl~d~~Y~~Al~~ylklk~~~vf  537 (846)
T KOG2066|consen  508 LEVLAHLYLYDNKYEKALPIYLKLQDKDVF  537 (846)
T ss_pred             HHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence            344788899999999999999888776544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.92  E-value=0.15  Score=40.36  Aligned_cols=56  Identities=13%  Similarity=-0.012  Sum_probs=52.3

Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      -+....|+++.|++.|.+++.+-|..++.|+.-+.++.-+|+.++|.+-+++..+.
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999999999999999999998765

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.88  E-value=0.22  Score=45.24  Aligned_cols=33  Identities=9%  Similarity=0.183  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 047120          137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY  169 (634)
Q Consensus       137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  169 (634)
                      =+..++++|...|+.||..+-..|++++.+.+-
T Consensus       141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            345555666666666666666666666555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.83  E-value=5.8  Score=40.29  Aligned_cols=101  Identities=16%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 047120          258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN  337 (634)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  337 (634)
                      ....+.|+++.|.++.++..  +...|..|.+...+.|+++-|++.|.+..+     |..|+-.|.-.|+.+.-.++.+.
T Consensus       326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHH
Confidence            34455777777777766653  566788888888888888888888877764     55666777777877666666665


Q ss_pred             HHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 047120          338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR  372 (634)
Q Consensus       338 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  372 (634)
                      ....+       -++....++.-.|+.++..+++.
T Consensus       399 a~~~~-------~~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  399 AEERG-------DINIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHcc-------CHHHHHHHHHHcCCHHHHHHHHH
Confidence            55442       24444555555667666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.63  E-value=12  Score=40.19  Aligned_cols=114  Identities=10%  Similarity=-0.033  Sum_probs=54.7

Q ss_pred             CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120          428 GLGELAFDLLMEMERLS-IEPDDI--TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA  504 (634)
Q Consensus       428 ~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  504 (634)
                      .+.+.|..++....... +.+...  ....+.......+..+++...++.....   ..+......-+..-.+.++++.+
T Consensus       255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence            44566777776654332 222211  2333333333332244555555543321   12333344444444567777777


Q ss_pred             HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120          505 RNLIEDMP--MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       505 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  544 (634)
                      ...+..|+  ..-...-..-+..++...|+.++|...|+++.
T Consensus       332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            66666662  11122222334445555677777777777663

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.57  E-value=0.72  Score=42.04  Aligned_cols=100  Identities=22%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             HHHHHHhcc--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 047120          402 AIKVFEQIE--DGSVDHWNAMINGLAIH-----GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG-----------  463 (634)
Q Consensus       402 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----------  463 (634)
                      .+..|..+.  +.|-.+|-..+..+...     +..+=....++.|.+-|+.-|..+|+.|++.+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            345555555  55777777777777543     345556667888999999999999999998876532           


Q ss_pred             -----CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120          464 -----LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       464 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  502 (634)
                           +-+-++.+++.|.. +|+.||.++-..|++++++.|-.-
T Consensus       133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~  175 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT  175 (406)
T ss_pred             hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence                 33557889999988 899999999999999999988643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.32  E-value=0.13  Score=30.79  Aligned_cols=26  Identities=12%  Similarity=0.105  Sum_probs=19.8

Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          553 SYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       553 ~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      +|..|+.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778888888888888888888753

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.27  E-value=2.9  Score=35.07  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a  536 (634)
                      .-.+.++.+++..++..+.-...-.|...++.  ...+.+.|+|.+|..+|+++ ...|....-..|+..|....+-..=
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W   96 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW   96 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence            33456677777777777765322222233333  33466778888888888877 3344444445555555443332333


Q ss_pred             HHHHHHHhccC
Q 047120          537 EPVAKHLIGMD  547 (634)
Q Consensus       537 ~~~~~~~~~~~  547 (634)
                      ..+-+++++.+
T Consensus        97 r~~A~evle~~  107 (160)
T PF09613_consen   97 RRYADEVLESG  107 (160)
T ss_pred             HHHHHHHHhcC
Confidence            33334444444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.16  E-value=2  Score=42.87  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120          521 RTLLSACRNYENLNVGEPVAKHLIGMDSS--NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK  584 (634)
Q Consensus       521 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  584 (634)
                      ..|...+.+.|+.++|++.++.+++..|.  +-.....|+..|...+.+.++..++.+.-+...++
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk  328 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK  328 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence            44555666777777777777777766654  34466777777777777777777777764443433

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.14  E-value=9.7  Score=37.62  Aligned_cols=149  Identities=13%  Similarity=0.037  Sum_probs=82.9

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP---DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQH  487 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~  487 (634)
                      ...+|..++..+.+.|.++.|...+.++...+..+   ++.....-++.....|+-.+|...++..... .+..+  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            44567788888888888888888888887643221   2334444455566678888888887776651 11111  111


Q ss_pred             HHHHHHHHhccCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNL-IEDMPMEPNDVIWRTLLSACRNY------ENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      ...+...+..  ..+..... ........-...+..+...+...      +..+++...|+++.+..|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111100  00000000 00000000112333333334444      888999999999999999988888888887


Q ss_pred             HhcC
Q 047120          561 FAGL  564 (634)
Q Consensus       561 ~~~~  564 (634)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK09687 putative lyase; Provisional

Probab=93.06  E-value=8.2  Score=36.56  Aligned_cols=217  Identities=7%  Similarity=-0.023  Sum_probs=89.4

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCh----HHHHHHHhhCccCCCChhHHHHHHHH
Q 047120          152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI----ESARELFDSMPIRERNLISWNSVLNG  227 (634)
Q Consensus       152 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~p~~~~~~~ll~~  227 (634)
                      +|..+....+..+...|..+....+.+-...+|...-...+.++.+.|+.    .++...+..+....|+...-...+.+
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a  114 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA  114 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            34444444444444444332222222222233444444444445544442    34555555543334554444444444


Q ss_pred             HHhcCCc----HHHHHHHHhh-CCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC-ChHHHH
Q 047120          228 YAQLKSG----LQFAWQIFEK-MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG-RVDIAR  301 (634)
Q Consensus       228 ~~~~~~~----~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~  301 (634)
                      ++..+..    ...+...+.. +..++..+-...+.++.+.++.+....+..-+..+|..+-...+.++.+.+ +...+.
T Consensus       115 LG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~  194 (280)
T PRK09687        115 TGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIR  194 (280)
T ss_pred             HhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHH
Confidence            4443220    1112222211 222344444445555555554332222233333344444444444444432 122233


Q ss_pred             HH-hhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 047120          302 RL-FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK  376 (634)
Q Consensus       302 ~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  376 (634)
                      .. ...+.+++..+....+.++.+.|+ ..|+..+-...+.    ++  ....++.++...|+. ++...+..+.+
T Consensus       195 ~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        195 EAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence            22 223334555555555555555555 3444444444422    11  123444555555553 34444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.87  E-value=2.2  Score=37.11  Aligned_cols=94  Identities=11%  Similarity=0.024  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh------hH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI--TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL------QH  487 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~  487 (634)
                      .+..+..-|.+.|+.+.|++.|.++.+....|...  .+..+++.....+++..+.....++........|.      ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            45666677777777777777777777665555432  55666777777777777777776665521111111      12


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      |..|  .+...+++.+|.+.|-+.
T Consensus       118 ~~gL--~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGL--ANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHH--HHHHhchHHHHHHHHHcc
Confidence            2222  233567888887777665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.83  E-value=9.2  Score=41.26  Aligned_cols=187  Identities=16%  Similarity=0.114  Sum_probs=101.1

Q ss_pred             HhcCCHHHHHHHHHhcc----CCCh-------hHHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 047120          394 SKCGSIENAIKVFEQIE----DGSV-------DHWNAMIN-GLAIHGLGELAFDLLMEMERL----SIEPDDITFTGLLN  457 (634)
Q Consensus       394 ~~~~~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~  457 (634)
                      .-..++++|..++.++.    .++.       ..|+.+-. .....|++++|+++.+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            44566777777666543    2211       13444432 234467788888888776654    11223445666677


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH-----HHHHhccCCHHHH--HHHHHhC-----CCCC----CHHHHH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM-----VDILGRAGHIEAA--RNLIEDM-----PMEP----NDVIWR  521 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A--~~~~~~~-----~~~p----~~~~~~  521 (634)
                      +..-.|++++|..+.....+. .-..+...+..+     ...+..+|+...|  +..+...     +.+|    -..+..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            777788999998887776652 112233333222     2234566633322  2222222     1122    223444


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhccC----CCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120          522 TLLSACRNYENLNVGEPVAKHLIGMD----SSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKERNLKK  584 (634)
Q Consensus       522 ~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  584 (634)
                      .+..++.+   ++.+..-..+.++..    |..-.   .+..|+.++...|+.++|...+.++.......
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            44444433   444444444444443    22222   23467888889999999999998887655443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.66  E-value=4.9  Score=34.26  Aligned_cols=102  Identities=17%  Similarity=0.080  Sum_probs=54.1

Q ss_pred             HHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 047120          104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR  183 (634)
Q Consensus       104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  183 (634)
                      ++.++.+.+.|++|+...+..+++.+.+.|.+..    +.+++..++-+|.......+-.+..  ....+.++--+|..+
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            3445555566777777777777777777776543    3334445544444433333322221  222222222222222


Q ss_pred             ChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 047120          184 DSVSYNSMIDGYVKSGNIESARELFDSM  211 (634)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m  211 (634)
                      =...+..++..+...|++-+|+++.+..
T Consensus        88 L~~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   88 LGTAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            2224555666777777777777777664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.55  E-value=0.19  Score=31.81  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      |..+..++..|.+.|++++|+++++++.+...
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P   32 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDP   32 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            46789999999999999999999999977644

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.38  E-value=10  Score=35.99  Aligned_cols=18  Identities=6%  Similarity=-0.104  Sum_probs=13.4

Q ss_pred             HHhcCChhHHHHHHHHHh
Q 047120          527 CRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~  544 (634)
                      +.+.++++.|.++|+-++
T Consensus       256 ~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHhhcCHHHHHHHHHHHH
Confidence            566788888888887554

It is also involved in sporulation [].

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.29  E-value=0.065  Score=45.01  Aligned_cols=84  Identities=19%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHH
Q 047120          125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA  204 (634)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  204 (634)
                      ++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++....   .....+++.+.+.|.+++|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            3444445555555555566555544444555666666666666655666665553221   2233444555555555555


Q ss_pred             HHHHhhC
Q 047120          205 RELFDSM  211 (634)
Q Consensus       205 ~~~~~~m  211 (634)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            5555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.17  E-value=7.3  Score=33.83  Aligned_cols=111  Identities=6%  Similarity=-0.032  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH-----HHHHHHHhccCCHHH
Q 047120          432 LAFDLLMEMERLSIEPDDI---TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-----GCMVDILGRAGHIEA  503 (634)
Q Consensus       432 ~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~  503 (634)
                      +.....+++....-. +..   +-..+...+...+++++|...++....    .|....+     -.|.......|.+++
T Consensus        70 ~~~~~~ekf~~~n~~-t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~  144 (207)
T COG2976          70 KSIAAAEKFVQANGK-TIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADA  144 (207)
T ss_pred             hhHHHHHHHHhhccc-cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            445555556543211 111   223345567788899999888887765    2222333     235566788899999


Q ss_pred             HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          504 ARNLIEDMPMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       504 A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      |++.++... .++  ......-...+...|+-++|...|+++++.++
T Consensus       145 AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         145 ALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             HHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence            999998863 232  33344455678889999999999999988873

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.16  E-value=11  Score=37.22  Aligned_cols=66  Identities=9%  Similarity=0.130  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS----SNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ....+|..++..+.+.|.++.|...+.++...++    ..|......+..+...|+..+|+..++...+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456888899999999999999999999988662    25677888899999999999999999888773

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.12  E-value=0.2  Score=29.97  Aligned_cols=28  Identities=7%  Similarity=0.038  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      +|..|...|.+.|++++|+.++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667778888888888888888885543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.07  E-value=5.4  Score=32.08  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=37.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL  481 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  481 (634)
                      ...+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+ .|+
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~  151 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL  151 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence            34456667777777777777777653 366777777777777778877777777777766 343

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.06  E-value=0.21  Score=29.27  Aligned_cols=30  Identities=3%  Similarity=0.043  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      +|..+...+...|++++|...++++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455566667777777777777777776666

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.97  E-value=8.8  Score=34.35  Aligned_cols=61  Identities=10%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             HHHHhccCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH-HH--hcCChhHHHHHHHHHhccCCCCCc
Q 047120          492 VDILGRAGHIEAARNLIEDM---PMEPNDVIWR---TLLSA-CR--NYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~l~~~-~~--~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      ...-+..+++.+|+++|++.   .+..+..-|.   .++.+ +|  ...|.-.+.+.+++-.+++|.-.+
T Consensus       161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            33445677788888887776   2222222221   12221 22  235666777777887778876444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.95  E-value=19  Score=38.25  Aligned_cols=96  Identities=18%  Similarity=0.141  Sum_probs=50.7

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcH
Q 047120          161 ISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL  235 (634)
Q Consensus       161 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~  235 (634)
                      ++.+.+.+.+++|+.+.+.....     -...+...|..+.-.|++++|-...-.|..  -+...|..-+..+...+. .
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~-l  439 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQ-L  439 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccccc-c
Confidence            45556666777777766655431     223566667777777777777666666654  333444444444444333 2


Q ss_pred             HHHHHHHhhCCC----CCchHHHHHHHHHHh
Q 047120          236 QFAWQIFEKMPE----RDLISWNSMLHGCVK  262 (634)
Q Consensus       236 ~~a~~~~~~~~~----~~~~~~~~l~~~~~~  262 (634)
                      .   .++.-++.    .+...|..++..+..
T Consensus       440 ~---~Ia~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  440 T---DIAPYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             c---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence            2   22222222    244556666666655

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.93  E-value=0.22  Score=46.40  Aligned_cols=109  Identities=11%  Similarity=0.074  Sum_probs=77.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYE  531 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g  531 (634)
                      -.+-|.+.|.+++|+..|......   .| +..++..-..+|.+..++..|..-...+ .+. .-...|.--+.+-...|
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            366788999999999999887652   44 7778888888999999998887766654 211 12335555555666688


Q ss_pred             ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA  570 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  570 (634)
                      ...+|.+-++.++++.|.+..    |-..+.+.....++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~  214 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER  214 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence            999999999999999998544    33444444444343

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.18  E-value=0.92  Score=42.18  Aligned_cols=61  Identities=18%  Similarity=0.158  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ++..++..+...|+++.+...+++++..+|-+...|..++.+|.+.|+...|+..++++.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4445555566666666666666666666666666666666666666666666666666644

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.96  E-value=26  Score=37.77  Aligned_cols=127  Identities=9%  Similarity=-0.026  Sum_probs=62.2

Q ss_pred             cccHHHHHHHHH-cCCCcchHHHHHHHHHHCCCCCCcc-----hHHHHHHHHhccCChHHHHHHHHHHHHhcCC----CC
Q 047120           84 PFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKF-----SASLVLKACSRLGLIEEGLQIHGLLRKVAFG----SD  153 (634)
Q Consensus        84 ~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~  153 (634)
                      ..++-.+...+. ...+.+.|...+++.+...-+++-.     .-..+++.+.+.+... |...++..++.--.    +-
T Consensus        59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w  137 (608)
T PF10345_consen   59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW  137 (608)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence            345555566555 4567888888888765432222221     1123344455544444 77777766543211    12


Q ss_pred             hhHHHHH-HHHHHhcCCHHHHHHHHhhCCC-----CC--hhHHHHHHHHHH--hCCChHHHHHHHhhC
Q 047120          154 LFLQNCL-ISLYVRCGYLEFARQLFDKMGI-----RD--SVSYNSMIDGYV--KSGNIESARELFDSM  211 (634)
Q Consensus       154 ~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~--~~g~~~~A~~~~~~m  211 (634)
                      ...+..+ +..+...++...|.+.++.+..     .|  ...+-.++.+..  +.+.++++++.++++
T Consensus       138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence            2223333 2333333677777777766532     12  223333333332  345455566555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.84  E-value=24  Score=37.31  Aligned_cols=437  Identities=13%  Similarity=0.121  Sum_probs=198.6

Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---C
Q 047120          172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---R  248 (634)
Q Consensus       172 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~  248 (634)
                      ...+.+..+++||.   -.+.+++.-..+.+.+.++++++.+.......|......+-...  .+.-..+.+.+..   .
T Consensus       200 ~lv~~y~~~~~PDy---~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esas--QefL~~v~~~l~~d~~~  274 (929)
T KOG2062|consen  200 LLVKTYLKLPSPDY---FSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESAS--QEFLDSVLDRLPADDAR  274 (929)
T ss_pred             HHHHHHccCCCCCe---eeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccC--HHHHHHHHHHccccccc
Confidence            34444445555554   45667778888899999999888875444445555554443322  2222333344432   1


Q ss_pred             CchHHHHHH-------------HHHHhcCChHHHHHHHhhCCC--CChhH--HHHHHHHHHHcCChHHHH--HHhhhCCC
Q 047120          249 DLISWNSML-------------HGCVKCGKMDDAQALFDKMPK--RDVVS--WANMIDGYAKLGRVDIAR--RLFDEMPK  309 (634)
Q Consensus       249 ~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~l~~~~~~~g~~~~A~--~~~~~~~~  309 (634)
                      |......++             .-+.++++.+  ..+++...+  ++..+  -..+.+++...|-..+-.  .-++.+.+
T Consensus       275 de~p~~kii~ILSGe~tik~~l~FL~~~N~tD--~~iL~~iK~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~Wlsk  352 (929)
T KOG2062|consen  275 DEKPMEKIISILSGEETIKLYLQFLLRHNNTD--LLILEEIKESVRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSK  352 (929)
T ss_pred             ccChHHHHHHHhcCchHHHHHHHHHHHcCCch--HHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhh
Confidence            222222222             2223333322  112222211  22222  233456666666433211  11111211


Q ss_pred             -CChhhHHHHH-HHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCch
Q 047120          310 -RDVVACNAMM-GGYVRNGYSMKALEIFDNMQCELYLHPDDASL----VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG  383 (634)
Q Consensus       310 -~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  383 (634)
                       .+..-+++.. -+....|+..+|.++++-..... - +....|    ....-++.+.|..+...+++.+.++..-.+..
T Consensus       353 AtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~-~-~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v  430 (929)
T KOG2062|consen  353 ATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKE-A-GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVV  430 (929)
T ss_pred             cchHhhhhhhhhcceeeccccchHHHHhhhhCCcc-C-CCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhh
Confidence             1222222222 24456788888888887765431 1 111111    11222344555555577777666554433333


Q ss_pred             hHHHHHHHHhHhcCCHHHHHHHHHhcc---CC-ChhHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH--H
Q 047120          384 KHGVALIDMYSKCGSIENAIKVFEQIE---DG-SVDHWN--AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFT--G  454 (634)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~-~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~--~  454 (634)
                      ..-.+|.-++...|.-  -.++|+.+.   .. +.++=.  .+..++...|...  .+.+++|..--.... ..+..  .
T Consensus       431 ~hG~cLGlGLa~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~  506 (929)
T KOG2062|consen  431 RHGACLGLGLAGMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLA  506 (929)
T ss_pred             hhhhhhhccchhcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHH
Confidence            3333444444433321  123333322   22 222111  1222333333321  122333332100000 11111  1


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCcccChhH--HHHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQH--YGCMVDILGRAGHIEAARNLIEDMPMEPN--DVIWRTLLSACRNY  530 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~  530 (634)
                      +.-++..-|+-++|..+.+++..+.  .|-...  .-++.-+|+-.|+.....+++.-.-..+|  +.-+..+.-++.-.
T Consensus       507 vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~  584 (929)
T KOG2062|consen  507 VGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF  584 (929)
T ss_pred             HhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence            2224455566677888888877621  222111  23456677778877666666665422333  33444444446666


Q ss_pred             CChhHHHHHHHHHhccCCCC--CchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCc
Q 047120          531 ENLNVGEPVAKHLIGMDSSN--SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL  608 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (634)
                      .+.+....+.+-+.+...+.  -.+-..|+-+|+..|.. +|+.+++.|......-...-..+.+.  ..-....++..|
T Consensus       585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~D~~~fVRQgAlIa~a--mIm~Q~t~~~~p  661 (929)
T KOG2062|consen  585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-EAINLLEPLTSDPVDFVRQGALIALA--MIMIQQTEQLCP  661 (929)
T ss_pred             cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhcChHHHHHHHHHHHHH--HHHHhcccccCc
Confidence            77777777777766554222  22444555666666654 78888888876543211100000000  001122345566


Q ss_pred             chhHHHHHHHhcccCccc
Q 047120          609 QVRDIYYMLDNMWTPDSV  626 (634)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~  626 (634)
                      ....+.+.+...+...|.
T Consensus       662 kv~~frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  662 KVNGFRKQLEKVINDKHE  679 (929)
T ss_pred             hHHHHHHHHHHHhhhhhh
Confidence            677777777766555544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.79  E-value=13  Score=34.00  Aligned_cols=241  Identities=14%  Similarity=0.137  Sum_probs=137.7

Q ss_pred             CChHHHHHHhhhCCC----C---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC--CC--CCCHhHHHHHHHHHHccCC
Q 047120          295 GRVDIARRLFDEMPK----R---DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL--YL--HPDDASLVIVLSAIAQLGH  363 (634)
Q Consensus       295 g~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~--~p~~~~~~~ll~~~~~~~~  363 (634)
                      ...++|+.-|.+..+    +   ...+...++....+.|++++.++.|+++..--  .+  .-+..+.+.++...+.+.+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            356666666665542    1   22344567778888888888888888775310  11  2234566777777776677


Q ss_pred             hHHHHHHHHHHHH----c-CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC------------C---hhHHHHHHHH
Q 047120          364 IDKGVAIHRYLEK----D-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG------------S---VDHWNAMING  423 (634)
Q Consensus       364 ~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~---~~~~~~li~~  423 (634)
                      .+....+++.-.+    . +-..--.+-..|...|...+++....+++..+...            +   ...|..-|..
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            6666666554322    1 11122233345777888888888888888776421            1   2357777888


Q ss_pred             HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HhccCCHHHHHHHHHHhHHhcCc--ccChhH---HHHHH
Q 047120          424 LAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNA-----CAHAGLVKEGLLCFELMRRIHKL--EPELQH---YGCMV  492 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~---~~~l~  492 (634)
                      |...++-.+...++++...-. .-|-+.... +++-     ..+.|++++|..-|-++.+.+.-  .|...+   |..|.
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA  279 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence            888888777777777765422 234443333 3333     34678888887544444432221  222222   56666


Q ss_pred             HHHhccCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047120          493 DILGRAGH----IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK  541 (634)
Q Consensus       493 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  541 (634)
                      +++.+.|-    -.+|.    -.+-.|.......++.+|.. +++.+-++++.
T Consensus       280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~  327 (440)
T KOG1464|consen  280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILK  327 (440)
T ss_pred             HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence            66666652    11111    00234566677888888765 45555554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.67  E-value=16  Score=34.76  Aligned_cols=59  Identities=17%  Similarity=-0.061  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          417 WNAMINGLAIHGLG---ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       417 ~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      ...++.+|...+..   ++|..+++.+...  -|+ +..+..-++.+.+.++.+++.+.+..|..
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~  149 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR  149 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence            44455555554442   3444455555433  233 33444445555556666777777777665

It is also involved in sporulation [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.60  E-value=0.33  Score=28.39  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=25.1

Q ss_pred             chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          552 SSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..+..++.+|...|++++|++.+++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999998664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.48  E-value=8  Score=36.88  Aligned_cols=145  Identities=12%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             hhhHHHHHHhccC-chH----HHHHHHHHHHhCCCCchhhhhHHHHHhhc--CC-CCCCHHHHHHHHHhccccCC---CC
Q 047120           14 TQSTLLLLRKCKT-LND----VNQIHARMITTGFIKNTHLTTKLVASFSS--SP-CTPLTEFARYIFFKYHAFRE---KK   82 (634)
Q Consensus        14 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~-~~~~~~~A~~~~~~~~~~~~---~~   82 (634)
                      ...++.+|...+. ++.    +..+++.|.+.|+.-+..++-+-.-....  .. ....+..|..+++.|++.-+   .+
T Consensus        60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~  139 (297)
T PF13170_consen   60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP  139 (297)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence            4455555555555 433    35888888888888877655432222221  11 11234668888888875431   22


Q ss_pred             CcccHHHHHHHHHcCCCc----chHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCC--hHHHHHHHHHHHHhcCCCCh
Q 047120           83 DPFLWNAIIKTYSHGLDP----KEALVMFCLMLDNGVSVDKF--SASLVLKACSRLGL--IEEGLQIHGLLRKVAFGSDL  154 (634)
Q Consensus        83 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~  154 (634)
                      +-..+..++..  ...+.    +.+...|+.+.+.|+..+..  ..+.++..+.....  ...+.++++.+.+.|+++..
T Consensus       140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~  217 (297)
T PF13170_consen  140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY  217 (297)
T ss_pred             cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence            22344444433  33333    35556677777777766655  23333333322222  34677788888888877666


Q ss_pred             hHHHHH
Q 047120          155 FLQNCL  160 (634)
Q Consensus       155 ~~~~~l  160 (634)
                      ..|..+
T Consensus       218 ~~yp~l  223 (297)
T PF13170_consen  218 MHYPTL  223 (297)
T ss_pred             ccccHH
Confidence            665544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.39  E-value=51  Score=40.26  Aligned_cols=65  Identities=11%  Similarity=0.003  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      ..+|.......+..|.++.|...+-++.+..  -|..+...+..++..|+...|+.++++-.+...+
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence            4588888888999999999998888777666  5678999999999999999999999998866543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.77  E-value=6  Score=33.53  Aligned_cols=26  Identities=12%  Similarity=-0.111  Sum_probs=14.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERL  443 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~  443 (634)
                      ..|.-+-.+.|++.+|...|..+...
T Consensus       171 EALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         171 EALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHhHHHHhccchHHHHHHHHHHHcc
Confidence            34444445556666666666665543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.76  E-value=0.43  Score=27.95  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=25.7

Q ss_pred             chHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          552 SSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ..|..++.+|...|++++|+..+++..+..
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            468899999999999999999999987653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.68  E-value=0.04  Score=46.29  Aligned_cols=53  Identities=13%  Similarity=0.197  Sum_probs=24.4

Q ss_pred             HHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 047120           90 IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH  142 (634)
Q Consensus        90 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  142 (634)
                      +|..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            34444445555555555555554433333444455555555554444444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.26  E-value=13  Score=31.66  Aligned_cols=121  Identities=12%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh-HHHH--HHHHHhccC
Q 047120          424 LAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-HYGC--MVDILGRAG  499 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g  499 (634)
                      +++.+..++|+.-|..+.+.|...=+. ............|+...|...|+++-+... .|... -...  -...+...|
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g  146 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG  146 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence            356678888999998888876543322 333444556788899999999998876422 23221 1111  123456788


Q ss_pred             CHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          500 HIEAARNLIEDMPME--PN-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       500 ~~~~A~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      .+++.....+.+..+  |- ...-..|.-+-.+.|++..|...|+.+..
T Consensus       147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            898888888877322  22 23445677777889999999999988765

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.24  E-value=9  Score=34.54  Aligned_cols=177  Identities=10%  Similarity=0.043  Sum_probs=90.2

Q ss_pred             hHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120          384 KHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA  460 (634)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  460 (634)
                      ..|.....+|....++++|...+.+..   +.+...|       ...+.++.|.-+.++|.+.  .--...|......|.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence            445555556666667776666555543   1111111       1122345555555555542  111235556666777


Q ss_pred             ccCCHHHHHHHHHHhHH-hcCcccChh--HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047120          461 HAGLVKEGLLCFELMRR-IHKLEPELQ--HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~-~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      ..|..+.|-..++++-+ ..++.|+..  .|..-.......++...|.+            .+..+...+.+...+++|-
T Consensus       103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e------------l~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE------------LYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH------------HHHHhhhHhhhhHHhhHHH
Confidence            77777777666665543 112333321  12222222222222222222            3344445566777777776


Q ss_pred             HHHHHHhccC------CCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          538 PVAKHLIGMD------SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       538 ~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ..+.+-....      |..-..|...+.+|....++..|...++.--+.+
T Consensus       171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            6665543221      2222346667777778889989888887554443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.71  E-value=4.3  Score=37.87  Aligned_cols=74  Identities=14%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMER-----LSIEPDDITFTGLL  456 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll  456 (634)
                      ++..++..+...|+.+.+...++++..   -+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+.....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            445566677777777777777776653   2555777777777777777777777777654     46666666555444


Q ss_pred             HH
Q 047120          457 NA  458 (634)
Q Consensus       457 ~~  458 (634)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            44

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.63  E-value=2.8  Score=35.22  Aligned_cols=73  Identities=14%  Similarity=0.028  Sum_probs=53.6

Q ss_pred             HhccCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120          495 LGRAGHIEAARNLIEDM-PMEPNDVIWRTL-LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW  567 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  567 (634)
                      -.+.++.+++..+++.+ .+.|.......+ ...+...|++.+|+++++.+.+..|..|..--.++.++...|+.
T Consensus        20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            35778999999999988 456665544333 23377899999999999998888887776666666666655553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.50  E-value=2.5  Score=34.78  Aligned_cols=71  Identities=13%  Similarity=0.104  Sum_probs=38.0

Q ss_pred             ccCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120          497 RAGHIEAARNLIEDM-PMEPNDVIWRTL-LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW  567 (634)
Q Consensus       497 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  567 (634)
                      ..++++++..+++.+ .+.|+..-...+ ...+...|++.+|.++++.+.+..+..|..--.++.++.-.|+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            466666666666666 233433222111 12255666666666666666655555554445555555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.45  E-value=0.52  Score=25.68  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=17.3

Q ss_pred             chHHHHHHHHhcCCCchHHHHHHH
Q 047120          552 SSYVLLSNMFAGLGMWNDARRVRS  575 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A~~~~~  575 (634)
                      .....++.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777778888887777765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.35  E-value=0.63  Score=26.88  Aligned_cols=27  Identities=11%  Similarity=0.034  Sum_probs=15.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +..++.+.|+.++|.+.++++++..|+
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444455556666666666666655554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.88  E-value=4.2  Score=30.93  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       430 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      .-+..+-++.+....+.|++......+++|-+.+++..|.++++.++.+.+.  ....|..+++
T Consensus        26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq   87 (108)
T PF02284_consen   26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence            3356666777777788999999999999999999999999999999876543  3337776664

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.84  E-value=20  Score=32.21  Aligned_cols=91  Identities=14%  Similarity=0.050  Sum_probs=48.5

Q ss_pred             HHHHHhcc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHhccCCCCCchH------H
Q 047120          491 MVDILGRA-GHIEAARNLIEDM-----PMEPNDVIWRTLLSA---CRNYENLNVGEPVAKHLIGMDSSNSSSY------V  555 (634)
Q Consensus       491 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~------~  555 (634)
                      +...|... .++++|+..++..     +-+.+...-.+++.+   -...+++.+|+.+|+++....-+++-.-      .
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf  198 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF  198 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence            44444433 5566666666655     112222233333333   3567899999999999987665444321      1


Q ss_pred             HH-HHHHhcCCCchHHHHHHHHHHhCC
Q 047120          556 LL-SNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       556 ~l-~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .- +..+.-.++.=.+...+++..+..
T Consensus       199 lkAgLChl~~~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  199 LKAGLCHLCKADEVNAQRALEKYQELD  225 (288)
T ss_pred             HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence            11 222222355555666666665543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.81  E-value=11  Score=35.92  Aligned_cols=123  Identities=10%  Similarity=0.115  Sum_probs=64.2

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHhHh--cC----CHHHHHHHHHhccCC-------ChhHHHHHHHHHHHcCC----h
Q 047120          368 VAIHRYLEKDQFSLNGKHGVALIDMYSK--CG----SIENAIKVFEQIEDG-------SVDHWNAMINGLAIHGL----G  430 (634)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~----~  430 (634)
                      ..+++.+.+.|+.-+..++-+..-....  ..    ....|..+|+.|.+.       +-.++..++..  ..++    .
T Consensus        82 ~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~  159 (297)
T PF13170_consen   82 LDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELA  159 (297)
T ss_pred             HHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHH
Confidence            3455555566655555444332222221  11    234456666666532       22233333322  2222    3


Q ss_pred             HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          431 ELAFDLLMEMERLSIEPDDI--TFTGLLNACAHAGL--VKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       431 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      +.+..+|+.+.+.|+..+..  ....++..+.....  ...+.++++.+.+ .++++....|..++-
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence            56677788888878776543  44444443333322  3467778888887 688877777665543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.81  E-value=6.5  Score=34.21  Aligned_cols=94  Identities=12%  Similarity=0.118  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhCC---CCCCHHHHH---
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWR---  521 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~---  521 (634)
                      ..+..+...|.+.|+.+.|.+.|.++.. +...+.  ...+-.++....-.|++..+...+.++.   ..+......   
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3677788888889999999998888877 443443  4556778888888888888888877661   111212111   


Q ss_pred             HHHHH--HHhcCChhHHHHHHHHHh
Q 047120          522 TLLSA--CRNYENLNVGEPVAKHLI  544 (634)
Q Consensus       522 ~l~~~--~~~~g~~~~a~~~~~~~~  544 (634)
                      ....+  +...+++..|-+.|-...
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            11222  345677777776665544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.30  E-value=15  Score=30.53  Aligned_cols=49  Identities=12%  Similarity=0.198  Sum_probs=28.7

Q ss_pred             ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      ..++.+++..+++.+.-...-.+...++..  ..+.+.|+|++|..+|++.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l   70 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILREL   70 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhh
Confidence            366667777777666553222233444433  3356777777777777776

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=87.13  E-value=60  Score=36.94  Aligned_cols=183  Identities=13%  Similarity=0.016  Sum_probs=87.8

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 047120          279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI  358 (634)
Q Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~  358 (634)
                      +|..+-...+..+...+..+ ...+...+..+|...-...+.++.+.+..+.    +....    -.++...-.....++
T Consensus       696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL  766 (897)
T PRK13800        696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGL  766 (897)
T ss_pred             CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHH
Confidence            44444444444444332111 1233444455555555555555555443321    11122    134444444455555


Q ss_pred             HccCChHH-HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH-HHHhccCCChhHHHHHHHHHHHcCChHHHHHH
Q 047120          359 AQLGHIDK-GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK-VFEQIEDGSVDHWNAMINGLAIHGLGELAFDL  436 (634)
Q Consensus       359 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~  436 (634)
                      ...+..+. +...+..+.+   .++..+-...+.++...|..+.+.. +...+..++...-...+.++...+. +++...
T Consensus       767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~  842 (897)
T PRK13800        767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA  842 (897)
T ss_pred             HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence            55444332 2233333332   3456666666666766666544422 3333445555555556666666654 345555


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       437 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      +..+.+   .|+...-...+.++.+...-..+...+..+.+
T Consensus       843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~  880 (897)
T PRK13800        843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT  880 (897)
T ss_pred             HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence            555553   45655555666666664333455556655554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.93  E-value=5.5  Score=29.97  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      +.-++.+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+.  +...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            44566677777777788999999999999999999999999999988864432  4446666553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.92  E-value=1.1  Score=26.05  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=25.7

Q ss_pred             chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          552 SSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..|..++.+|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999988653

...

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.89  E-value=49  Score=35.67  Aligned_cols=186  Identities=12%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             CCcccHHHHHHHHHcCCCcchHHHHHHHHHH-CCCCCCcc--hHHHHHHHHh-ccCChHHHHHHHHHHHHhcCCCChh--
Q 047120           82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKF--SASLVLKACS-RLGLIEEGLQIHGLLRKVAFGSDLF--  155 (634)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~--  155 (634)
                      .+...|..+|..         |+..++-+.+ ..++|...  ++-.+...+. ...+++.|+..+++.....-.++..  
T Consensus        28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~   98 (608)
T PF10345_consen   28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL   98 (608)
T ss_pred             hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence            355667777653         4555666653 33334332  4455555555 6789999999999876543222221  


Q ss_pred             ---HHHHHHHHHHhcCCHHHHHHHHhhCCC----CC----hhHHHHH-HHHHHhCCChHHHHHHHhhCccC-----CCCh
Q 047120          156 ---LQNCLISLYVRCGYLEFARQLFDKMGI----RD----SVSYNSM-IDGYVKSGNIESARELFDSMPIR-----ERNL  218 (634)
Q Consensus       156 ---~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~-----~p~~  218 (634)
                         ....++..+.+.+... |...+++..+    ..    ...+..+ +..+...+++..|++.++.+...     .|..
T Consensus        99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen   99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence               2235567777766655 7777766432    11    1123333 23333347999999998877654     3444


Q ss_pred             hHHHHHHHHHHhcCCc-HHHHHHHHhhC----CC---------CCchHHHHHHHHH--HhcCChHHHHHHHhhCC
Q 047120          219 ISWNSVLNGYAQLKSG-LQFAWQIFEKM----PE---------RDLISWNSMLHGC--VKCGKMDDAQALFDKMP  277 (634)
Q Consensus       219 ~~~~~ll~~~~~~~~~-~~~a~~~~~~~----~~---------~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~  277 (634)
                      ..+..++.+....... .+.+.+.++++    ..         |-..+|..+++.+  ...|++..+...++++.
T Consensus       178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555433221 34444444333    11         2345666666654  46777777777766654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.59  E-value=6.1  Score=34.35  Aligned_cols=86  Identities=13%  Similarity=0.009  Sum_probs=43.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHH
Q 047120          422 NGLAIHGLGELAFDLLMEMERLSIEPD-----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDIL  495 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~  495 (634)
                      .-+...|++++|..-|.+.+.. +++.     ...|..-..++.+.+.++.|+.-..+....   .|+ ......-..+|
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay  178 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY  178 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence            3455666666666666666653 1221     123444444555666666666555555441   221 11111223455


Q ss_pred             hccCCHHHHHHHHHhC
Q 047120          496 GRAGHIEAARNLIEDM  511 (634)
Q Consensus       496 ~~~g~~~~A~~~~~~~  511 (634)
                      .+...+++|++-|+++
T Consensus       179 ek~ek~eealeDyKki  194 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKI  194 (271)
T ss_pred             HhhhhHHHHHHHHHHH
Confidence            5666666666666555

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.15  E-value=53  Score=35.35  Aligned_cols=71  Identities=17%  Similarity=-0.025  Sum_probs=42.4

Q ss_pred             CcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC-------hHHHHHHHHHHHHhcCCCChh
Q 047120           83 DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL-------IEEGLQIHGLLRKVAFGSDLF  155 (634)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~  155 (634)
                      +.-.| .+|-.+.|+|++++|.++..+... ........+...+..+....+       -+....-|++..+.....|++
T Consensus       111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy  188 (613)
T PF04097_consen  111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY  188 (613)
T ss_dssp             TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred             CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence            34456 677778888999999888865544 345666778888888876432       234555555555544333444

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.10  E-value=27  Score=31.99  Aligned_cols=198  Identities=13%  Similarity=0.059  Sum_probs=123.4

Q ss_pred             CCChhhHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHH---cCC--C
Q 047120          309 KRDVVACNAMMGG-YVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHIDKGVAIHRYLEK---DQF--S  380 (634)
Q Consensus       309 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~  380 (634)
                      +||+..-|..-.+ -.+...+++|+.-|++..+..|-+.+  -.....++....+.+++++....+.++..   ..+  .
T Consensus        23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN  102 (440)
T KOG1464|consen   23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN  102 (440)
T ss_pred             CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence            3565544433221 12345789999999999855332222  12445567778899999999998888764   212  2


Q ss_pred             CchhHHHHHHHHhHhcCCHHHHHHHHHhcc-----CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----
Q 047120          381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE-----DGSV----DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP----  447 (634)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p----  447 (634)
                      .+....+++++....+.+.+--..+|+.-.     ..+.    .+-..|...|...+++.+..+++.++....-.-    
T Consensus       103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed  182 (440)
T KOG1464|consen  103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED  182 (440)
T ss_pred             ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence            345667788887777777776666665432     1122    244567788888888888888888887642221    


Q ss_pred             CH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH----HHHhccCCHHHHHH
Q 047120          448 DD-------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV----DILGRAGHIEAARN  506 (634)
Q Consensus       448 ~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~  506 (634)
                      |.       ..|..-+..|....+-..-..+++.......-.|.+.....+-    .++.+.|++++|-.
T Consensus       183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT  252 (440)
T KOG1464|consen  183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT  252 (440)
T ss_pred             hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence            11       2466666777777777777778877665334445555444332    23457788887653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.82  E-value=2.1  Score=40.23  Aligned_cols=96  Identities=15%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120          420 MINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA  498 (634)
Q Consensus       420 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  498 (634)
                      -..-|.+.|.+++|+..|.+....  .| +.+++..-..+|.+...+..|..=...+....  ..-...|..-+.+-...
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESL  178 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence            356789999999999999988764  67 88999999999999999888877666655420  00122233333333344


Q ss_pred             CCHHHHHHHHHhC-CCCCCHHH
Q 047120          499 GHIEAARNLIEDM-PMEPNDVI  519 (634)
Q Consensus       499 g~~~~A~~~~~~~-~~~p~~~~  519 (634)
                      |...+|.+-++.. .++|+..-
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHH
Confidence            5566666655554 56777443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.59  E-value=1.3  Score=27.31  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          552 SSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .++..|+.+|...|++++|.+++++..+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            35677888888888888888888877543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.42  E-value=4.3  Score=35.52  Aligned_cols=75  Identities=16%  Similarity=0.026  Sum_probs=51.8

Q ss_pred             CcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCHHHHH
Q 047120           99 DPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA---FGSDLFLQNCLISLYVRCGYLEFAR  174 (634)
Q Consensus        99 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~  174 (634)
                      .-+.|+..|-.+...+.--++ .....+..+....|.+++.+++..+++..   -.+|+.++.+|++.|-+.|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            345677888777776644333 34444444444678888888888777643   3678888888999888888888774

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=85.31  E-value=74  Score=36.24  Aligned_cols=255  Identities=13%  Similarity=0.085  Sum_probs=136.7

Q ss_pred             HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH
Q 047120          271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS  350 (634)
Q Consensus       271 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~  350 (634)
                      .+...+..++..+-...+..+.+.+..+-...+...+.+++...-...+.++.+.+........+..+..    .+|...
T Consensus       625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~----~~d~~V  700 (897)
T PRK13800        625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG----SPDPVV  700 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc----CCCHHH
Confidence            4444445577777777777777766544334444445555555555555555444322222223333332    245555


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCCh
Q 047120          351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG  430 (634)
Q Consensus       351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~  430 (634)
                      -...+.++...+..+ ...+.. +.+   .+|..+-...+.++.+.+..+.   +...+..++...-...+.++...+..
T Consensus       701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~  772 (897)
T PRK13800        701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG  772 (897)
T ss_pred             HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence            555555555433211 111222 221   4455556666666666554332   33334456666666666777766654


Q ss_pred             HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHH
Q 047120          431 EL-AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE  509 (634)
Q Consensus       431 ~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  509 (634)
                      +. +...+..+..   .+|...-...+.++...|..+.+...+..+.+    .++..+-...+.++.+.+.. ++...+-
T Consensus       773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~  844 (897)
T PRK13800        773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALV  844 (897)
T ss_pred             cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHH
Confidence            32 3455555543   45666677777777777765554444444444    34555555667777777653 4445544


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       510 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      .+-..|+...-...+.++.+.+....+...+..+++
T Consensus       845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~  880 (897)
T PRK13800        845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT  880 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence            443367777766777777665444566666666665

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.20  E-value=2.5  Score=37.81  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhH-HHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQH-YGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIW-RTLLSACRNYENLNV  535 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~  535 (634)
                      |.....++.|+..|.+...   +.|...+ |..=+.++.+..+++.+..--.+. .+.||.+-- ..+..++.....+.+
T Consensus        20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            6666677777776666654   3555533 455566667777777766555444 566665533 334444566677777


Q ss_pred             HHHHHHHHhcc
Q 047120          536 GEPVAKHLIGM  546 (634)
Q Consensus       536 a~~~~~~~~~~  546 (634)
                      |+..++++..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            77777777544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.09  E-value=56  Score=34.68  Aligned_cols=247  Identities=11%  Similarity=-0.011  Sum_probs=128.6

Q ss_pred             HcCCchHHHHHHHHHHh-------cCCCCCCHhHHHHHHHHHHccC-----ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120          324 RNGYSMKALEIFDNMQC-------ELYLHPDDASLVIVLSAIAQLG-----HIDKGVAIHRYLEKDQFSLNGKHGVALID  391 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~-------~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  391 (634)
                      ...+.+.|+.+|+.+..       . +   .......+..+|.+..     +.+.|..++....+.|. |+....-..+.
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~  335 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY  335 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence            34555666666665544       2 2   2223334444444322     45566777766666653 23322222222


Q ss_pred             HhHh-cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120          392 MYSK-CGSIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV  465 (634)
Q Consensus       392 ~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  465 (634)
                      .... ..+...|.++|..... ..+.++..+..+|..    ..+...|..++.+..+.| .|...--...+..+.. +.+
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~  413 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY  413 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence            2221 2345677777766653 233343333333332    235777888888887776 3333322233333443 666


Q ss_pred             HHHHHHHHHhHHhcCcccChhHHHHHHHH---Hhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChh
Q 047120          466 KEGLLCFELMRRIHKLEPELQHYGCMVDI---LGR----AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLN  534 (634)
Q Consensus       466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~  534 (634)
                      +.+.-.+..+.. .+.+-....-..+...   ...    ..+.+.+...+.+...+-+......+...|..    ..+++
T Consensus       414 ~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~  492 (552)
T KOG1550|consen  414 DTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPE  492 (552)
T ss_pred             cHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChH
Confidence            666555555544 2322111111111111   111    22556677777776545566666666665543    23688


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHhcC-C--CchHHHHHHHHHHhCC
Q 047120          535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGL-G--MWNDARRVRSMMKERN  581 (634)
Q Consensus       535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~  581 (634)
                      .|...+.++-...   +.....++.++... |  .+..|.+++++..+.+
T Consensus       493 ~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  493 KAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             HHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence            8888888887777   67777888887643 1  2577888887776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.86  E-value=0.88  Score=26.21  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=24.8

Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          553 SYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       553 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ++..++.++.+.|++++|.+.++++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4678899999999999999999998764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=84.35  E-value=29  Score=30.81  Aligned_cols=159  Identities=12%  Similarity=0.061  Sum_probs=92.2

Q ss_pred             CCc-hhHHHHHHHHhHhcCCHHHHHHHHHhccCCChh-HHHHHHH--HHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHH
Q 047120          380 SLN-GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD-HWNAMIN--GLAIHGLGELAFDLLMEMERLSI-EPDDITFTG  454 (634)
Q Consensus       380 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~  454 (634)
                      .|+ +.+|+-+.-.+...|+++.|.+.|+...+-|+. -|..+-.  ++--.|++.-|.+-+...-+... .|=...|..
T Consensus        95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY  174 (297)
T COG4785          95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY  174 (297)
T ss_pred             CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence            444 577888888888899999999999988765554 2222222  22235788888877777665421 111223433


Q ss_pred             HHHHHhccCCHHHHHHHH-HHhHHhcCcccChhHHHHHH-HHHhccCCHHHHHHHHHhCCCCCC-------HHHHHHHHH
Q 047120          455 LLNACAHAGLVKEGLLCF-ELMRRIHKLEPELQHYGCMV-DILGRAGHIEAARNLIEDMPMEPN-------DVIWRTLLS  525 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~  525 (634)
                      +..   ..-+..+|..-+ ++..+     .|..-|...+ ..|.-.=..+.+.+-...-. ..+       ..||..|.+
T Consensus       175 l~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K  245 (297)
T COG4785         175 LNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADA-TDNTSLAEHLTETYFYLGK  245 (297)
T ss_pred             HHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHH
Confidence            332   334555665433 33322     3444454333 33332223333333333221 111       347788888


Q ss_pred             HHHhcCChhHHHHHHHHHhccC
Q 047120          526 ACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       526 ~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      -+...|+.++|..+|+-++..+
T Consensus       246 ~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         246 YYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHhccccHHHHHHHHHHHHHHh
Confidence            8999999999999999988665

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=84.08  E-value=34  Score=31.37  Aligned_cols=62  Identities=18%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          490 CMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      .+.+.|.+.|.+..|..-+++| ..-|+    ...+-.+..+|...|-.++|...-+-+-...|+++
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            4566777888887777777776 21222    23455566778888888888776654444445544

>smart00028 TPR Tetratricopeptide repeats

Probab=84.06  E-value=2  Score=23.95  Aligned_cols=31  Identities=10%  Similarity=0.058  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      .|..+...+...|+++.|...++++++..|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3445555666666777777777666665553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.86  E-value=3.5  Score=38.03  Aligned_cols=61  Identities=15%  Similarity=0.038  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      +++.....|...|.+.+|..+.++++..+|-+...+..|...|...|+--.|.+-++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            4445556788999999999999999999999999999999999999998888888887743

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=83.77  E-value=3.1  Score=35.54  Aligned_cols=65  Identities=14%  Similarity=0.113  Sum_probs=38.1

Q ss_pred             CCCCCH-HHHHHHHHHHHhcC-----------ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          512 PMEPND-VIWRTLLSACRNYE-----------NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       512 ~~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+.|+. .++.++..++...+           .+++|...|+++...+|.+......|-..       ++|-++..++.+
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~  135 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK  135 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence            356663 46666666654332           36778888888888999875444444332       357777777777


Q ss_pred             CCCc
Q 047120          580 RNLK  583 (634)
Q Consensus       580 ~~~~  583 (634)
                      .+..
T Consensus       136 ~~~~  139 (186)
T PF06552_consen  136 QGLG  139 (186)
T ss_dssp             SSS-
T ss_pred             HHhh
Confidence            6654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.66  E-value=71  Score=34.68  Aligned_cols=138  Identities=16%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             HHhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHHHHHHH
Q 047120          164 YVRCGYLEFARQLFDKMG-IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQFAWQI  241 (634)
Q Consensus       164 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~  241 (634)
                      +.+.|++++|...+-+-. .-+.   ..+|.-|....+..+-..+++.+.+. -.+...-+.|+.+|.+.++ .+...+.
T Consensus       378 Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd-~~kL~ef  453 (933)
T KOG2114|consen  378 LYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD-VEKLTEF  453 (933)
T ss_pred             HHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc-hHHHHHH
Confidence            345566666665553322 1111   12333444444444444444444443 2233344566677777666 6666655


Q ss_pred             HhhCCCCCc-hHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC
Q 047120          242 FEKMPERDL-ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK  309 (634)
Q Consensus       242 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  309 (634)
                      .+...+... .-....+..+.+.+-.++|.-+-..... .......   .+-..+++++|++.+..++-
T Consensus       454 I~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp~  518 (933)
T KOG2114|consen  454 ISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLPI  518 (933)
T ss_pred             HhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence            555442111 1133344555555555555555444333 2222222   23456778888888777764

>PRK10941 hypothetical protein; Provisional

Probab=83.62  E-value=4.8  Score=37.61  Aligned_cols=62  Identities=16%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..+.+-.+|.+.++++.|.++.+.++.+.|++|.-+..-+.+|.+.|.+..|..-++...+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            45566677899999999999999999999999999999999999999999999988877655

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=83.34  E-value=3  Score=27.57  Aligned_cols=34  Identities=9%  Similarity=0.100  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120          522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                      .+.-++.+.|++++|.+..+.+++.+|.+..+..
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4556788899999999999999999998865443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.24  E-value=2.1  Score=26.22  Aligned_cols=29  Identities=10%  Similarity=0.092  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      .+++.|...|...|++++|+.+++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46777888888888888888888888754

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.84  E-value=8.1  Score=36.18  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             hCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccC---CCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCC
Q 047120           40 TGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR---EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS  116 (634)
Q Consensus        40 ~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  116 (634)
                      .|.+.+..+-..++..-.....+   ..+...+-++....   ..|+. +-.++++.+.+ -++++++.++..=++-|+-
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~i---dd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF  132 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEI---DDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIF  132 (418)
T ss_pred             cCCCcceeehhhhhhccccccch---hHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccc
Confidence            35555555555555555545555   55655555543211   11121 12233444433 4667788887777777888


Q ss_pred             CCcchHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 047120          117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA  149 (634)
Q Consensus       117 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g  149 (634)
                      ||.++++.+|+.+.+.+++..|.++.-.|....
T Consensus       133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            888888888888888888887777776666543

>PRK11619 lytic murein transglycosylase; Provisional

Probab=82.79  E-value=75  Score=34.36  Aligned_cols=58  Identities=10%  Similarity=-0.021  Sum_probs=27.0

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120          352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE  410 (634)
Q Consensus       352 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (634)
                      ..-+......++++.+...+..|-... .....-..-+..++...|+.++|...|+.+.
T Consensus       316 e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        316 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            333334445556655555555543211 1122222334444444566666666665553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.34  E-value=72  Score=33.86  Aligned_cols=244  Identities=11%  Similarity=-0.008  Sum_probs=136.0

Q ss_pred             chHHHHHHHHHHhcCCCCCCHhHHHHHHHH-HHccCChHHHHHHHHHHHH-------cCCCCchhHHHHHHHHhHhcC--
Q 047120          328 SMKALEIFDNMQCELYLHPDDASLVIVLSA-IAQLGHIDKGVAIHRYLEK-------DQFSLNGKHGVALIDMYSKCG--  397 (634)
Q Consensus       328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~--  397 (634)
                      ...|.++++.....+.+.+-...-.....+ .....|.+.|..+++.+.+       .+   .+.....+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            456777777777653332222222222233 4567799999999998876       45   3345556777777643  


Q ss_pred             ---CHHHHHHHHHhccC-CChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHH
Q 047120          398 ---SIENAIKVFEQIED-GSVDHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTGLLNA--CAHAGLVKEG  468 (634)
Q Consensus       398 ---~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a  468 (634)
                         +.+.|..++.+... .++..-..+...+...   .+...|.++|....+.|.. ....+..+...  ..-..+.+.|
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence               66778988887663 3344444444444332   3578999999999988743 22222222211  1234578899


Q ss_pred             HHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCCCHHHHHHHHH-H---HH-h---cCChhHHH
Q 047120          469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLS-A---CR-N---YENLNVGE  537 (634)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~-~---~~-~---~g~~~~a~  537 (634)
                      ..++.++.. .| .|....-...+..+.. ++++.+.-.+..+   +.+ ...+-...+. .   .. .   ..+.+.+.
T Consensus       384 ~~~~k~aA~-~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~  459 (552)
T KOG1550|consen  384 FAYYKKAAE-KG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF  459 (552)
T ss_pred             HHHHHHHHH-cc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence            999999887 34 3332222233344444 6666665544333   211 1111111110 0   11 1   22556666


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHhcC----CCchHHHHHHHHHHhCC
Q 047120          538 PVAKHLIGMDSSNSSSYVLLSNMFAGL----GMWNDARRVRSMMKERN  581 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~  581 (634)
                      ..+.++...+  ++.....|++.|...    .+++.|...+.+....+
T Consensus       460 ~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  460 SLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             HHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            6666655444  445666677776544    34778888888777666

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=82.14  E-value=2.1  Score=25.19  Aligned_cols=22  Identities=32%  Similarity=0.233  Sum_probs=12.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHH
Q 047120          153 DLFLQNCLISLYVRCGYLEFAR  174 (634)
Q Consensus       153 ~~~~~~~li~~~~~~g~~~~A~  174 (634)
                      ++..|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4455566666666666665554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=81.77  E-value=32  Score=29.41  Aligned_cols=47  Identities=28%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 047120          139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS  185 (634)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  185 (634)
                      .++.+.+.+.++.|+...+..+++.+.+.|++.....++.--.-+|.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS   60 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS   60 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc
Confidence            34555666778888888888888888888888777776655433333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.15  E-value=5.1  Score=35.34  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=39.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          489 GCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       489 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      +..+..+.+.+..++|+...++- +.+|. ..+-..++..++-.|++++|..-++-+-++.|..
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            34455666777777777766543 44444 3344556666777777777777777777776654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.85  E-value=21  Score=35.62  Aligned_cols=129  Identities=12%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             HHHHHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          422 NGLAIHGLGELAFDL-LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      .--...|+...|-+- +.-+....-.|+...+...|  ....|.++.+...+..+.+.  +.....+..+++....+.|+
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhh
Confidence            333445666555443 33344333344444333332  45667777777776666542  22234455666677777777


Q ss_pred             HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 047120          501 IEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY  554 (634)
Q Consensus       501 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  554 (634)
                      +++|...-..| +.+ .++.........-...|-++++.-.+++++.++|+...-|
T Consensus       373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~  428 (831)
T PRK15180        373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW  428 (831)
T ss_pred             HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence            77777776665 211 2222333233334456667777777777777775544333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.83  E-value=13  Score=33.49  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhcCCh-------hHHHHHHHHHhccC--CCC----CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          519 IWRTLLSACRNYENL-------NVGEPVAKHLIGMD--SSN----SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+.-+.+.|...|+-       ..|...|+++.+..  |..    ....+.++.+..+.|++++|.+.|.++...+-
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            444455556666664       44555555555443  222    23677788889999999999999999876654

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.80  E-value=18  Score=33.98  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047120          377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED-G--------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP  447 (634)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  447 (634)
                      .|.+....+...++..-....++++++..+-++.. +        ...+|-.++.    .=++++++.++..=+.-|+-|
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence            34455555555666666667778888877766652 1        2223333322    236778888888888889999


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          448 DDITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       448 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      |..++..++..+.+.+++.+|.++.-.|..
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999999998887776654

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=80.19  E-value=2  Score=34.27  Aligned_cols=36  Identities=42%  Similarity=0.743  Sum_probs=30.8

Q ss_pred             ceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHhcccCccc
Q 047120          587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSV  626 (634)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (634)
                      |++|+.+    |.|++++.+||+.....++...++.|+.-
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~   37 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTK   37 (116)
T ss_pred             CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhh
Confidence            5788876    99999999999998888888888887754

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.08  E-value=9.9  Score=37.76  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             HhcCCHHHHH-HHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047120          394 SKCGSIENAI-KVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL  470 (634)
Q Consensus       394 ~~~~~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  470 (634)
                      ...|++-.|- +++..+.  +.+++........+...|+++.+...+...... +.....+...+++...+.|++++|..
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence            3456666554 4444443  234444444445567789999999998877653 45567788999999999999999999


Q ss_pred             HHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047120          471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSA  526 (634)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~  526 (634)
                      .-+.|.. ..++ +.+....-...-...|-++++.-.+++. .+ +|...-|...+..
T Consensus       379 ~a~~~l~-~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~  434 (831)
T PRK15180        379 TAEMMLS-NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS  434 (831)
T ss_pred             HHHHHhc-cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence            9988876 3332 3333333333344667889999999887 33 3444445444443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=80.07  E-value=2.8  Score=23.82  Aligned_cols=30  Identities=0%  Similarity=0.079  Sum_probs=25.0

Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      |+.+.+..+|+++++..|.++..|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567888999999999889888888877764

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	634
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 78/618 (12%), Positives = 174/618 (28%), Gaps = 202/618 (32%)

Query: 7   YNQPCNSTQSTLL---LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
                  + +  L   LL K +      ++  + +      N      L++   +    P
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE------EMVQKFVEEVLRINYKF---LMSPIKTEQRQP 105

Query: 64  LTEFARYI------------FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
                 YI            F KY+  R +    L  A+++     L P + +++   +L
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-----LRPAKNVLIDG-VL 159

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEE-GLQIHGL-LRKVAFGSDLF--LQN-CL------ 160
            +G +       + L  C    +  +   +I  L L+       +   LQ          
Sbjct: 160 GSGKTW------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 161 ---------ISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMIDGY-------VKSG 199
                    I L +     E  R L  K          +V      + +       + + 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKS-GL--QFAWQIFEKMPE--------- 247
                +++ D +       IS +         +   L  ++     + +P          
Sbjct: 274 F----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 248 --------RDLIS-WN-----------SMLHGCVKCGKMDDAQALFDKM---PKRDV--- 281
                   RD ++ W+           +++   +   +  + + +FD++   P       
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIP 388

Query: 282 -----VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
                + W ++I              + +++ K  +V                       
Sbjct: 389 TILLSLIWFDVIK--------SDVMVVVNKLHKYSLVEKQPKESTI-------------- 426

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR-----YLEKDQFSLNGKHGVALID 391
                  +     S+ + L        ++   A+HR     Y     F  +      L D
Sbjct: 427 ------SIP----SIYLELKV-----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-D 470

Query: 392 MY---------SKCGSIENAIKVFEQIEDGSVD-HW--NAMIN-GLAIHGLGELAFDLLM 438
            Y               E  + +F  +    +D  +    + +   A +  G +  + L 
Sbjct: 471 QYFYSHIGHHLKNIEHPER-MTLFRMV---FLDFRFLEQKIRHDSTAWNASGSIL-NTLQ 525

Query: 439 EME--RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
           +++  +  I  +D  +  L+NA               ++  + K+E  L       D+L 
Sbjct: 526 QLKFYKPYICDNDPKYERLVNA---------------ILDFLPKIEENLICSKYT-DLLR 569

Query: 497 RA-----GHI--EAARNL 507
            A       I  EA + +
Sbjct: 570 IALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 84/594 (14%), Positives = 166/594 (27%), Gaps = 205/594 (34%)

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
           LL K       F++  L   Y    +L    +   +     +  Y    D       + +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQRD------RLYN 121

Query: 204 ARELFDSMPI-RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
             ++F    + R +           Y +L+  L       E  P ++++     + G + 
Sbjct: 122 DNQVFAKYNVSRLQP----------YLKLRQALL------ELRPAKNVL-----IDGVLG 160

Query: 263 CGK--MDDAQALFD-----KMPKRDVVSWANM---------IDGYAKL---------GRV 297
            GK  +             KM  +  + W N+         ++   KL          R 
Sbjct: 161 SGKTWV-ALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 298 DIA--------------RRLFDEMPK-------RDVVACNAMMGGYVRNGYSMKALEIFD 336
           D +              RRL    P         +V               + KA   F+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------------QNAKAWNAFN 263

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            + C++ L      +   LSA             H  L+    +L      +L+    K 
Sbjct: 264 -LSCKILLTTRFKQVTDFLSA---------ATTTHISLDHHSMTLTPDEVKSLL---LKY 310

Query: 397 GSIEN-------------AIKVF-EQIEDGSVDHWN--AMINGLAIHGLGELAFDLLMEM 440
                              + +  E I DG +  W+    +N   +  + E + ++L   
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 441 E------RLSIEPDD--ITFTGL---------------LNACAHAGLVKEGLLCFELMRR 477
           E      RLS+ P    I    L               +N      LV++     E    
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTIS 427

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIE-----------DMPMEPNDVIWRTLLSA 526
           I  +  EL+     ++    A H    R++++           D+     D  +      
Sbjct: 428 IPSIYLELK---VKLENE-YALH----RSIVDHYNIPKTFDSDDLIPPYLDQYF------ 473

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
              Y ++        HL  ++  +     L   +F     + +        K R+     
Sbjct: 474 ---YSHI------GHHLKNIE--HPERMTLFRMVFLDFR-FLEQ-------KIRH----D 510

Query: 587 GCSWIELEGVVHEF--------FVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
             +W     +++          ++ D      R +  +LD +   +       +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 75/469 (15%), Positives = 141/469 (30%), Gaps = 179/469 (38%)

Query: 4   SANYNQPCNSTQS-------------TLLLLR-------------KCKTLNDVNQIHARM 37
           S+N     +S Q+              LL+L               CK L          
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---------- 269

Query: 38  ITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97
           +TT   +   +T  L A+ ++                                +  +S  
Sbjct: 270 LTT---RFKQVTDFLSAATTTHIS-----------------------------LDHHSMT 297

Query: 98  LDPKEALVMFCLMLDNGVSVDKFSASLVLKACS----RLGLIEEGLQIHGLLRKVAFGSD 153
           L P E   +    LD           L  +  +    RL +I E ++  GL        D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQ------DLPREVLTTNPRRLSIIAESIR-DGLAT-----WD 345

Query: 154 LFLQ-NC-----LISLYVRCGYLEFA--RQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            +   NC     +I   +    LE A  R++FD++ +                       
Sbjct: 346 NWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSV----------------------- 380

Query: 206 ELF-DSMPIRERNL-ISWN--------SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
             F  S  I    L + W          V+N   +  S +       EK P+   IS   
Sbjct: 381 --FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLV-------EKQPKESTIS--- 427

Query: 256 MLHGC--VKCGKMDDAQALFDKM-----PKRDVVSW---ANMIDGY------------AK 293
            +         K+++  AL   +       +   S       +D Y              
Sbjct: 428 -IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 294 LGRVDIARRLF------DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
             R+ + R +F      ++  + D  A NA   G + N  +++ L+ +       Y+  +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNAS--GSILN--TLQQLKFYKP-----YICDN 537

Query: 348 DASLVIVLSAIAQ-LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           D     +++AI   L  I++ +   +Y +  + +L  +      + + +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.0 bits (146), Expect = 1e-09
 Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 9/179 (5%)

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            P +  L  +L        +D   A      + Q S   +  +A          +  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 405 VFEQIEDG-------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           +              ++D +NA++ G A  G  +    +L  ++   + PD +++   L 
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 458 ACAHAGLVKEGLL-CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
                      +  C E M +   L+ +      ++    RA  ++A   +     + P
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 58.3 bits (139), Expect = 6e-09
 Identities = 30/326 (9%), Positives = 80/326 (24%), Gaps = 39/326 (11%)

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
                  +     + +  +  A  L                                   
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVH---------------------------HGQR 157

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGR-V 297
           +K     L  +N+++ G  + G   +   +   +       D++S+A  +    +  +  
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
               R  ++M +  +          +        L+    ++    L P     V     
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
           +  +   D  V+  +     +           +++ S+   +          E       
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKT 337

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
              +       L     +    +ER   E     +  L        L+ E  +   L++ 
Sbjct: 338 LKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLC-------LLDEREVVRMLLQV 390

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEA 503
           +  L  + + +  +   L        
Sbjct: 391 LQALPAQGESFTTLARELSARTFSRH 416

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.5 bits (124), Expect = 4e-07
 Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 8/166 (4%)

Query: 55  SFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG 114
                P     + A  +        E         +++     L                
Sbjct: 63  RLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQ 122

Query: 115 VSVDKFSASLVLKACSRLGLIEEG---LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
           +S  +       K C     +      L +H   R+      L + N ++  + R G  +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182

Query: 172 FARQLFDKM---GIR-DSVSYNSMIDGYVKSGN-IESARELFDSMP 212
               +   +   G+  D +SY + +    +      +     + M 
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 42/321 (13%), Positives = 91/321 (28%), Gaps = 35/321 (10%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFD-SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
             V+  S   G      ++    +   +  +  + +++  S   G   L++ +Q    + 
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET-VQRLLPVL 129

Query: 243 EK----MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR---DVVSWANMIDGYAKLG 295
            +     PE  +++  S   G      +     +  +        VV+ A+   G   L 
Sbjct: 130 CQAHGLTPE-QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE 188

Query: 296 RVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-SL 351
            V     +  +      + VVA  +  GG        + L +         L P    ++
Sbjct: 189 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ---AHGLTPQQVVAI 245

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDM---YSKCGSIENAIKVFE 407
                    L  + +   +       Q   L  +  VA+           +++  + V  
Sbjct: 246 ASNGGGKQALETVQR--LLPVL---CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300

Query: 408 Q---IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAG 463
           Q   +    V    +   G       +    +L +     + P  +              
Sbjct: 301 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASHDGGKQALE 358

Query: 464 LVKEGLLCFELMRRIHKLEPE 484
            V+  L       + H L PE
Sbjct: 359 TVQRLLPVL---CQAHGLTPE 376

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 43/305 (14%), Positives = 83/305 (27%), Gaps = 27/305 (8%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFD 336
            VV+ A+   G   L  V     +  +        VVA  +  GG        + L +  
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLC 250

Query: 337 NMQCELYLHPDDA-SLVIVLSAIAQLGHIDKGVAIHRY-----LEKDQFSLNGKHGVALI 390
                  L PD   ++   +     L  + +   +        L  DQ      HG    
Sbjct: 251 Q---AHGLPPDQVVAIASNIGGKQALETVQR--LLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN-GLAIHGLGELAFDLLMEMER-LSIEPD 448
            +     +++  + V  Q    + D   A+ +       L  +   LL  + +   + PD
Sbjct: 306 AL----ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ-RLLPVLCQAHGLTPD 360

Query: 449 DI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARN 506
            +               V+  L       + H L P+ +                     
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPDQVVAIASNGGKQALETVQRLLPV 417

Query: 507 LIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
           L +   + P+ V+   +     +  E +    PV     G+  +   +          L 
Sbjct: 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALE 477

Query: 566 MWNDA 570
                
Sbjct: 478 TVQQL 482

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 41/327 (12%), Positives = 83/327 (25%), Gaps = 36/327 (11%)

Query: 264 GKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFD---EMPKRDVVACNA 317
             +     +  +        VV+ A+   G   L  +     +      +P   VVA  +
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIAQLGHIDKGVAIHRY--- 373
            +GG        + L +         L PD   ++         L  + +   +      
Sbjct: 266 NIGGKQALETVQRLLPVLCQ---AHGLTPDQVVAIASHGGGKQALETVQR--LLPVLCQA 320

Query: 374 --LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ---IEDGSVDHWNAMINGLAIHG 428
             L  DQ      H      +     +++  + V  Q   +    V    +   G     
Sbjct: 321 HGLTPDQVVAIASHDGGKQAL----ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 376

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE---- 484
             +    L +  +   + PD +              V+  L       + H L P+    
Sbjct: 377 TVQRL--LPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVL---CQAHGLTPDQVVA 431

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPVAKHL 543
           +  +      L           L +   + P  V+   +     +  E +    PV    
Sbjct: 432 IASHDGGKQALET--VQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQA 489

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDA 570
            G+      +          L      
Sbjct: 490 HGLTPDQVVAIASNIGGKQALATVQRL 516

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 50/333 (15%), Positives = 90/333 (27%), Gaps = 75/333 (22%)

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           Y   ++       +  A +   S+   E++        +              I  K+ E
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR-FIDVLAITTKILE 333

Query: 248 RD---LISWNSMLHGCVKCGKMDDAQALFDKM----PKRDVVSWANMIDGYAKLGRVDIA 300
            D   L  +   L    + G+ +    + + +    P+   V+W  +   Y  + ++  A
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA 392

Query: 301 RRLFD---EMPKRDVVACNAMMGG--YVRNG--------YSMKALEIFDN---------M 338
           RR F     M  +   A         +   G        Y+  A  +F           M
Sbjct: 393 RRYFSKSSTMDPQFGPAWIGF--AHSFAIEGEHDQAISAYT-TAARLFQGTHLPYLFLGM 449

Query: 339 QCE---------------LYLHPDDASLVIVL-SAIAQLGHIDKGVAIHRY-----LEKD 377
           Q                   L   D  L+  L         +    AI+ +     L K 
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT--AINHFQNALLLVKK 507

Query: 378 QFSLNGKHGVALIDM---YSKCGSIENAIKVFEQ---IEDGSVDHWNAMINGLAIHGLGE 431
             S          ++   Y K    + AI    Q   +     +   A+   L       
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI--ALVYLHKKI 565

Query: 432 L-----AFDLLMEMERLSIEPDDITFTGLLNAC 459
                         E L+I P++I  + LL   
Sbjct: 566 PGLAITHLH-----ESLAISPNEIMASDLLKRA 593

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	634
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.6
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.52
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.51
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.46
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.38
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.38
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.31
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.3
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.25
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.17
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.15
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.08
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.06
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.06
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.96
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.95
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.93
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.89
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.85
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.83
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.81
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.8
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.76
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.72
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.67
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.64
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.6
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.59
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.54
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.5
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.47
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.45
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.44
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.43
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.35
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.34
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.32
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.31
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.28
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.16
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.12
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.03
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.9
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.88
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.87
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.75
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.71
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.53
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.13
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.12
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.06
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.03
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.01
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.65
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.61
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.59
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.44
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.24
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.19
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.84
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.77
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.56
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.96
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.93
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.33
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.12
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.91
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	93.53
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	92.97
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.03
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.88
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.63
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.34
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	91.25
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.04
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.03
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.97
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	90.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.44
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.19
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.61
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.4
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.23
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	87.85
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	87.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	87.37
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.27
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.15
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	83.74
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.3
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.87
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	82.76
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.67

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-41  Score=364.04  Aligned_cols=489  Identities=9%  Similarity=-0.017  Sum_probs=308.4

Q ss_pred             hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 047120           56 FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI  135 (634)
Q Consensus        56 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  135 (634)
                      +.+.|..   ..+...|+.++    .++...|+.++..|.+.|++++|+.+|++|.+  ..|+..++..++.+|.+.|++
T Consensus        63 ~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~  133 (597)
T 2xpi_A           63 TSTDGSF---LKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDY  133 (597)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccCcc---CCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcH
Confidence            4556666   67777777664    56889999999999999999999999999996  568889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------------ChhHHHHHHHHHH
Q 047120          136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-------------------DSVSYNSMIDGYV  196 (634)
Q Consensus       136 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~  196 (634)
                      ++|..+++.+...  .+++.+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.
T Consensus       134 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (597)
T 2xpi_A          134 ARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT  211 (597)
T ss_dssp             HHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH
Confidence            9999999988653  678899999999999999999999999965433                   3779999999999


Q ss_pred             hCCChHHHHHHHhhCccCCCChhH-HHHHHHHHHhcCCcHHHHHHHHhhC-----CC----CCchHHHHHHHHHHhcCCh
Q 047120          197 KSGNIESARELFDSMPIRERNLIS-WNSVLNGYAQLKSGLQFAWQIFEKM-----PE----RDLISWNSMLHGCVKCGKM  266 (634)
Q Consensus       197 ~~g~~~~A~~~~~~m~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~-----~~----~~~~~~~~l~~~~~~~g~~  266 (634)
                      +.|++++|++.|++|....|+... +..+...+...+   .........+     ..    ....+|+.++..|.+.|++
T Consensus       212 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  288 (597)
T 2xpi_A          212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA---DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL  288 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH---HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc---hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence            999999999999999887666443 333333222221   1111111211     11    1223344445556666666


Q ss_pred             HHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 047120          267 DDAQALFDKMPK--RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCE  341 (634)
Q Consensus       267 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  341 (634)
                      ++|.++|+++.+  ++..+++.++.+|.+.|++++|..+|+++.+   .+..+|+.++.++.+.|++++|..+++++...
T Consensus       289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  368 (597)
T 2xpi_A          289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR  368 (597)
T ss_dssp             HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence            666666666665  5666666666666666666666666666542   34556666666666666666666666666532


Q ss_pred             CCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHH
Q 047120          342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWN  418 (634)
Q Consensus       342 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~  418 (634)
                        .+.+..++..++..+.+.|++++|..+|+.+.+.. +.+..++..++.+|.+.|++++|+++|+++.   ..+..+|+
T Consensus       369 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  445 (597)
T 2xpi_A          369 --HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL  445 (597)
T ss_dssp             --CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence              22345556666666666666666666666665532 2345566666666666666666666666543   23455566


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CcccC--hhHHHHHHH
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEPE--LQHYGCMVD  493 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~  493 (634)
                      .++.+|.+.|++++|.++|+++.+.. ..+..+|..++..|.+.|++++|.++|+++.+..   +..|+  ..+|..++.
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  524 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH  524 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence            66666666666666666666665532 2235566666666666666666666666655421   33444  455666666


Q ss_pred             HHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          494 ILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       494 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      +|.+.|++++|.+.++++ .. +.+..+|..++.+|...|++++|.+.++++++.+|.++..+..++.+|.
T Consensus       525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            666666666666666655 22 2245566666666666666666666666666666666666666655553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-38  Score=337.86  Aligned_cols=475  Identities=10%  Similarity=-0.014  Sum_probs=388.7

Q ss_pred             HHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 047120           94 YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA  173 (634)
Q Consensus        94 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  173 (634)
                      +...|....+...+..+..    ++...|+.++..+.+.|++++|..+++++.+.  .|+..++..++.+|.+.|++++|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A  136 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA  136 (597)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence            3445666666666654432    57788999999999999999999999999864  46778899999999999999999


Q ss_pred             HHHHhhCC--CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCC-----------------CChhHHHHHHHHHHhcCCc
Q 047120          174 RQLFDKMG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE-----------------RNLISWNSVLNGYAQLKSG  234 (634)
Q Consensus       174 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------------p~~~~~~~ll~~~~~~~~~  234 (634)
                      ..+|+.+.  .++..+++.++.+|.+.|++++|+++|+++....                 ++..+|+.++.+|.+.|+ 
T Consensus       137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  215 (597)
T 2xpi_A          137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-  215 (597)
T ss_dssp             HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-
Confidence            99999984  5788999999999999999999999999654321                 246788889999999888 


Q ss_pred             HHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHH--H-HhhCCC----CChhHHHHHHHHHHHcCChHHHHHHh
Q 047120          235 LQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQA--L-FDKMPK----RDVVSWANMIDGYAKLGRVDIARRLF  304 (634)
Q Consensus       235 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (634)
                      .++|...|+++.+  | +...+..+...+...+..+.+..  + +..+..    ....+|+.++..|.+.|++++|.++|
T Consensus       216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  295 (597)
T 2xpi_A          216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL  295 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence            9999999988876  3 23344444443332222221111  0 112211    22345666688899999999999999


Q ss_pred             hhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 047120          305 DEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN  382 (634)
Q Consensus       305 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  382 (634)
                      +++.+  ++..+|+.++..|.+.|++++|+++|+++....  +.+..++..++.++.+.|++++|..+++.+.+.. +.+
T Consensus       296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~  372 (597)
T 2xpi_A          296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK  372 (597)
T ss_dssp             HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred             HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence            99987  789999999999999999999999999998652  3366789999999999999999999999998654 567


Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC  459 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  459 (634)
                      ..++..++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..++.+|
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  451 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH  451 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence            8899999999999999999999999875   4567899999999999999999999999999863 34678999999999


Q ss_pred             hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 047120          460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPN--DVIWRTLLSACRNY  530 (634)
Q Consensus       460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~  530 (634)
                      .+.|++++|.++|+.+.+..  +.+..+|+.++.+|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+.
T Consensus       452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            99999999999999998742  346788999999999999999999999988       44777  78999999999999


Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      |++++|++.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus       530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999997754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.3e-26  Score=233.31  Aligned_cols=365  Identities=13%  Similarity=0.073  Sum_probs=280.3

Q ss_pred             HHHHhCCChHHHHHHHhhCccCCCChhHH-HHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHH
Q 047120          193 DGYVKSGNIESARELFDSMPIRERNLISW-NSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDD  268 (634)
Q Consensus       193 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~-~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~  268 (634)
                      ..+.+.|++++|++.++++....|+.... ..+...+...++ .+.|...++....   .+..+|..+...+.+.|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            34445556666666555555444443332 223333344444 5666555555443   344566777777777777777


Q ss_pred             HHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120          269 AQALFDKMPK--R-DVVSWANMIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL  342 (634)
Q Consensus       269 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  342 (634)
                      |...|+++.+  | +..++..+...+.+.|++++|...|+++.+  | +...+..+...+...|++++|++.|+++... 
T Consensus        86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-  164 (388)
T 1w3b_A           86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-  164 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence            7777777653  3 445678888888888888888888877653  3 4456777888888889999999999988854 


Q ss_pred             CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHH
Q 047120          343 YLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWN  418 (634)
Q Consensus       343 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~  418 (634)
                        .| +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++..   +.+..++.
T Consensus       165 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence              45 45778888888889999999999999888864 4456788888899999999999999988765   34677889


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR  497 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  497 (634)
                      .+...|...|++++|+..|+++.+.  .|+ ..+|..+..++.+.|++++|...++.+.+.  .+.+..++..++..+.+
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence            9999999999999999999999885  454 668889999999999999999999999874  24567788999999999


Q ss_pred             cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120          498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  566 (634)
                      .|++++|.+.++++ ...|+ ..++..++..+.+.|++++|...++++++..|.++..|..++.++...|+
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999987 44454 77889999999999999999999999999999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=6.7e-25  Score=220.82  Aligned_cols=348  Identities=13%  Similarity=0.067  Sum_probs=303.1

Q ss_pred             HHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 047120          225 LNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVD  298 (634)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~  298 (634)
                      ...+.+.|+ +++|...++++.+  | +...+..+...+...|++++|...++...+   .+..+|..+...|.+.|+++
T Consensus         6 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGD-FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            345566788 9999999988765  4 445667777888999999999999988764   46789999999999999999


Q ss_pred             HHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHH
Q 047120          299 IARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYL  374 (634)
Q Consensus       299 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~  374 (634)
                      +|...|+++.+  | +..+|..+..++...|++++|++.|+++...   .|+. ..+..+...+...|++++|...++.+
T Consensus        85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999998863  3 4567999999999999999999999999854   5664 45677778888999999999999999


Q ss_pred             HHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 047120          375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DI  450 (634)
Q Consensus       375 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~  450 (634)
                      .+.. +.+...+..+..++...|++++|...|+++.   +.+...|..+...+...|++++|+..+++....  .|+ ..
T Consensus       162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~  238 (388)
T 1w3b_A          162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV  238 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence            8864 4467889999999999999999999999886   345678999999999999999999999999875  565 67


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACR  528 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~  528 (634)
                      ++..+..++...|++++|...++.+.+.  .+.+...|..++..|.+.|++++|.+.++++  ..+++..++..+...+.
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            8999999999999999999999999873  1334678999999999999999999999998  33456889999999999


Q ss_pred             hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ..|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus       317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999997653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=2.9e-26  Score=234.42  Aligned_cols=184  Identities=11%  Similarity=0.159  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCch
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH---------IDKGVAIHRYLEKDQFSLNG  383 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~  383 (634)
                      ..++.+|.+|++.|+.++|+++|++|... |+.||..||+.+|.+|++.+.         ++.|.++|++|.+.|+.||.
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~  105 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE  105 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence            45788899999999999999999999988 899999999999999987654         67899999999999999999


Q ss_pred             hHHHHHHHHhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120          384 KHGVALIDMYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC  459 (634)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  459 (634)
                      .+|+++|.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999886    5789999999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120          460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA  498 (634)
Q Consensus       460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  498 (634)
                      ++.|++++|.+++++|++ .+..|+..||+.++..|...
T Consensus       186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred             hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999988 78999999999999888753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=3.5e-27  Score=241.11  Aligned_cols=198  Identities=8%  Similarity=0.038  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhCCCCchh-hhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCC---------
Q 047120           30 VNQIHARMITTGFIKNTH-LTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLD---------   99 (634)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------   99 (634)
                      .+.+...+.+.+..+++. +++.+|.+|++.|++   ++|.++|++|...|++||..+||+||.+|++.+.         
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~---~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDV---LEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            456777788787776654 589999999999998   9999999999999999999999999999998765         


Q ss_pred             cchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 047120          100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK  179 (634)
Q Consensus       100 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  179 (634)
                      .+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHh
Q 047120          180 MG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ  230 (634)
Q Consensus       180 ~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~  230 (634)
                      |.    .||..+|++||.+|++.|++++|.++|++|.+.  .|+..||+.++..+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            95    489999999999999999999999999999876  7999999999888875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.3e-23  Score=216.03  Aligned_cols=422  Identities=10%  Similarity=-0.058  Sum_probs=305.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC-hhHHHHHHHHHHh
Q 047120          154 LFLQNCLISLYVRCGYLEFARQLFDKMG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN-LISWNSVLNGYAQ  230 (634)
Q Consensus       154 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~  230 (634)
                      ...+..+...+.+.|++++|+..|+++.  .|+...|..+..++.+.|++++|++.++++....|+ ...+..+..++..
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            3456667777888888888888888775  367778888888888888888888888887766454 4567777777777


Q ss_pred             cCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHH---HHHHHHcCChHHH
Q 047120          231 LKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANM---IDGYAKLGRVDIA  300 (634)
Q Consensus       231 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~g~~~~A  300 (634)
                      .|+ .++|...|+++..   ++......++..+........+.+.+..+..    ++.......   ............+
T Consensus        86 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           86 LGK-FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             TTC-HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             Hhh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            777 8888888877654   2333344444444443333333333322211    100000000   0000011111112


Q ss_pred             HHHhhhCCC---------C-ChhhHHHHHHHHHH---cCCchHHHHHHHHHHh-----cCCCCC--------CHhHHHHH
Q 047120          301 RRLFDEMPK---------R-DVVACNAMMGGYVR---NGYSMKALEIFDNMQC-----ELYLHP--------DDASLVIV  354 (634)
Q Consensus       301 ~~~~~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~~~~~p--------~~~~~~~l  354 (634)
                      ...+.....         + +...+......+..   .|++++|+..|+++..     . ...|        +...+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL-DKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh-ccCccccccChHHHHHHHHH
Confidence            222222211         1 24445555555554   8999999999999986     2 1122        24577788


Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChH
Q 047120          355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGE  431 (634)
Q Consensus       355 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~  431 (634)
                      ...+...|++++|...++.+.+....  ...+..+..++...|++++|...++++..   .+...|..+...|...|+++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            88899999999999999999887533  88888999999999999999999998763   46678999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120          432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       432 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      +|...++++.+.. ..+...+..+...+...|++++|..+++.+.+..  +.+...+..++..|.+.|++++|...++++
T Consensus       322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999998863 2246788899999999999999999999998742  335678889999999999999999999887


Q ss_pred             ----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          512 ----PMEPN----DVIWRTLLSACRN---YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       512 ----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                          +..++    ...+..+...+..   .|++++|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence                22222    3488889999999   999999999999999999999999999999999999999999999999776


Q ss_pred             CC
Q 047120          581 NL  582 (634)
Q Consensus       581 ~~  582 (634)
                      ..
T Consensus       479 ~~  480 (514)
T 2gw1_A          479 AR  480 (514)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-22  Score=212.62  Aligned_cols=446  Identities=10%  Similarity=-0.017  Sum_probs=300.6

Q ss_pred             cccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 047120           84 PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL  163 (634)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  163 (634)
                      ...|......+.+.|++++|+..|+++.+.+  |+..+|..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            3456667777778888888888888887743  677777777778888888888888888877765 2345567777777


Q ss_pred             HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHHHH
Q 047120          164 YVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFA  238 (634)
Q Consensus       164 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~~a  238 (634)
                      |...|++++|...|+++..   .+......++..+........+.+.+..+...  .|+...+..-...           
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------  151 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER-----------  151 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-----------
Confidence            7777777777777766532   23333333333333322222222222222111  0111100000000           


Q ss_pred             HHHHhhCCC-CCchHHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhHHHHHHHHHHH---cCChHHHHHHhhhCCC----
Q 047120          239 WQIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-DVVSWANMIDGYAK---LGRVDIARRLFDEMPK----  309 (634)
Q Consensus       239 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----  309 (634)
                         ...... |+....    ..+..........   ..+.+| +...+..+...+..   .|++++|...|+++.+    
T Consensus       152 ---~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  221 (514)
T 2gw1_A          152 ---KDKQENLPSVTSM----ASFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE  221 (514)
T ss_dssp             --------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ---HhhccCCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence               000000 111111    1111111000000   001111 23344444444443   6778888877776543    


Q ss_pred             -------------CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 047120          310 -------------RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK  376 (634)
Q Consensus       310 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  376 (634)
                                   .+..++..+...+...|++++|+..|+++...   .|+...+..+...+...|++++|...++.+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  298 (514)
T 2gw1_A          222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALK  298 (514)
T ss_dssp             HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred             hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence                         13457778888899999999999999998855   45577788888889999999999999998887


Q ss_pred             cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047120          377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT  453 (634)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  453 (634)
                      .. +.+...+..+..++...|++++|...|+++.   ..+...+..+...+...|++++|...++++.+.. ..+...+.
T Consensus       299 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  376 (514)
T 2gw1_A          299 LD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN  376 (514)
T ss_dssp             TC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred             cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence            64 4467788889999999999999999998875   3466788999999999999999999999998752 22467888


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhc---cCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047120          454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGR---AGHIEAARNLIEDM-PMEP-NDVIWRTLL  524 (634)
Q Consensus       454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  524 (634)
                      .+...+...|++++|...++.+.+...-.++    ...+..++..+.+   .|++++|.+.++++ ...| +..++..+.
T Consensus       377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  456 (514)
T 2gw1_A          377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA  456 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            9999999999999999999998774222222    3388899999999   99999999999987 3334 577888999


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      ..+...|++++|...++++++.+|.++..+..+.
T Consensus       457 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          457 QMKLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            9999999999999999999999999888777663

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=2.9e-22  Score=210.93  Aligned_cols=425  Identities=10%  Similarity=0.008  Sum_probs=266.7

Q ss_pred             cchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 047120          119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGY  195 (634)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  195 (634)
                      ...+..+...+.+.|++++|...|+.+++.. +.++..+..+..+|.+.|++++|++.|+++..   .+...|..+...+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            3567777788889999999999999999876 34678888999999999999999999988753   3667888899999


Q ss_pred             HhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCC------CchHHHHHHHHHHhcCChHHH
Q 047120          196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER------DLISWNSMLHGCVKCGKMDDA  269 (634)
Q Consensus       196 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A  269 (634)
                      ...|++++|++.|+.+ ...|+...  ..+..+...+. ...|...++.+...      ........+..+....+.+.+
T Consensus       104 ~~~g~~~~A~~~~~~~-~~~~~~~~--~~~~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVL-SLNGDFDG--ASIEPMLERNL-NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHTCHHHHHHHHHHH-C-------------CHHHHHH-HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHcCCHHHHHHHHHHH-hcCCCCCh--HHHHHHHHHHH-HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            9999999999999643 33333221  11223333333 56677777766541      112233445566667777777


Q ss_pred             HHHHhhCCCCChh---HHHHHHHHHHH--------cCChHHHHHHhhhCCCC--C--------hhhHHHHHHHHHHcCCc
Q 047120          270 QALFDKMPKRDVV---SWANMIDGYAK--------LGRVDIARRLFDEMPKR--D--------VVACNAMMGGYVRNGYS  328 (634)
Q Consensus       270 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~g~~  328 (634)
                      ...+......+..   ....+...+..        .|++++|..+|+++.+.  +        ..++..+...+...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence            7777666654433   33333333222        24667777777766542  2        12455556666777777


Q ss_pred             hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 047120          329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ  408 (634)
Q Consensus       329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  408 (634)
                      ++|+..|+++...   .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|++
T Consensus       260 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          260 LDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            7777777777743   4556666666777777777777777777776653 33556666677777777777777777766


Q ss_pred             cc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-
Q 047120          409 IE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-  484 (634)
Q Consensus       409 ~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-  484 (634)
                      +.   ..+...|..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|...++.+.+...-.++ 
T Consensus       336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            54   2345566667777777777777777777766542 223456666666777777777777777766552211111 


Q ss_pred             ---hhHHHHHHHHHhcc----------CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          485 ---LQHYGCMVDILGRA----------GHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       485 ---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                         ...+..+...+.+.          |++++|...++++ ... .+..++..+...+...|++++|...+++++++.|.
T Consensus       415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence               11133334555555          6677777666665 222 33556666666666677777777777777766666


Q ss_pred             CCch
Q 047120          550 NSSS  553 (634)
Q Consensus       550 ~~~~  553 (634)
                      ++..
T Consensus       495 ~~~~  498 (537)
T 3fp2_A          495 MDEK  498 (537)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            5544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1e-21  Score=201.89  Aligned_cols=323  Identities=12%  Similarity=0.092  Sum_probs=265.9

Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHH
Q 047120          249 DLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGY  322 (634)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~  322 (634)
                      +...+..+...+.+.|++++|..+|+++.+   .+..++..+...|...|++++|...|+++.+   .+..++..++..+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            345677777888888888888888887753   4677888888889999999999998888764   3567888899999


Q ss_pred             HHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 047120          323 VRNGYSMKALEIFDNMQCELYLHPDD----ASLVIV------------LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG  386 (634)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  386 (634)
                      ...|++++|+..|+++..   ..|+.    ..+..+            ...+...|++++|...++.+.+.. +.+..++
T Consensus       105 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  180 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR  180 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            999999999999999984   45654    344443            444788999999999999998764 4577889


Q ss_pred             HHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH-------
Q 047120          387 VALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGL-------  455 (634)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l-------  455 (634)
                      ..++.+|.+.|++++|...|+++.   +.+..+|..++..|...|++++|+..|+++...  .|+. ..+..+       
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence            999999999999999999999886   457889999999999999999999999999874  5554 344444       


Q ss_pred             -----HHHHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 047120          456 -----LNACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTL  523 (634)
Q Consensus       456 -----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  523 (634)
                           ...+.+.|++++|..+++.+.+.   .|+     ...|..++.++.+.|++++|++.++++ ...| +..+|..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence                 78899999999999999999874   344     447889999999999999999999997 4344 68899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH------------HHHhcCC-----CchHHHHHHHH-HHhC
Q 047120          524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS------------NMFAGLG-----MWNDARRVRSM-MKER  580 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~  580 (634)
                      +.+|...|++++|...++++++.+|.++..+..++            ..|...|     +.+++.+.+++ ..+.
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~  410 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW  410 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998            4455566     56677877776 3444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=7.4e-22  Score=207.84  Aligned_cols=426  Identities=9%  Similarity=-0.041  Sum_probs=321.0

Q ss_pred             CcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 047120           83 DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS  162 (634)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  162 (634)
                      ....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|.+.++++++..+ .+...+..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence            34668888999999999999999999998843 33556788888899999999999999999998763 36778888999


Q ss_pred             HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC----hhHHHHHHHHHHhcCCcHHHH
Q 047120          163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN----LISWNSVLNGYAQLKSGLQFA  238 (634)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~----~~~~~~ll~~~~~~~~~~~~a  238 (634)
                      ++...|++++|...|+.+.. +.......+..+...+...+|+..++++....|+    .......+..+..... .+.+
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  179 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD-SHLE  179 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC-HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC-hHHH
Confidence            99999999999999975532 2222233344555566678899999888765221    1122333444445555 6677


Q ss_pred             HHHHhhCCCCCch---HHHHHHHHHH--------hcCChHHHHHHHhhCCC--CC--------hhHHHHHHHHHHHcCCh
Q 047120          239 WQIFEKMPERDLI---SWNSMLHGCV--------KCGKMDDAQALFDKMPK--RD--------VVSWANMIDGYAKLGRV  297 (634)
Q Consensus       239 ~~~~~~~~~~~~~---~~~~l~~~~~--------~~g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~  297 (634)
                      ...+......+..   ....+...+.        ..|++++|..+++++.+  |+        ..++..+...+...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence            6666666554433   3333333322        22588999999999876  33        23577777889999999


Q ss_pred             HHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 047120          298 DIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE  375 (634)
Q Consensus       298 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  375 (634)
                      ++|...|++..+  |+...|..+...+...|++++|+..++++....  +.+..++..+...+...|++++|...++.+.
T Consensus       260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999998864  667788899999999999999999999998651  3356788899999999999999999999999


Q ss_pred             HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----C
Q 047120          376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE-----P  447 (634)
Q Consensus       376 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-----p  447 (634)
                      +.. +.+...+..+..++...|++++|...++++.   ..+...+..+...+...|++++|...++++.+....     .
T Consensus       338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  416 (537)
T 3fp2_A          338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV  416 (537)
T ss_dssp             HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence            865 4456888899999999999999999999876   346778999999999999999999999998764211     1


Q ss_pred             CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC
Q 047120          448 DDITFTGLLNACAHA----------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN  516 (634)
Q Consensus       448 ~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  516 (634)
                      ....+......+...          |++++|...++.+.+..  +.+...+..+..+|.+.|++++|.+.|+++ ...|+
T Consensus       417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            122345556677777          99999999999998742  345678999999999999999999999987 44454


Q ss_pred             H
Q 047120          517 D  517 (634)
Q Consensus       517 ~  517 (634)
                      .
T Consensus       495 ~  495 (537)
T 3fp2_A          495 M  495 (537)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.89  E-value=1.3e-20  Score=193.55  Aligned_cols=359  Identities=12%  Similarity=0.025  Sum_probs=230.4

Q ss_pred             ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHHHHHHHH
Q 047120          184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISWNSMLHG  259 (634)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~  259 (634)
                      +...|..++..+.+.|++++|+.+|+++....| +...+..+..++...|+ .+.|...|+++.+   .+...+..+...
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            456788888888888888888888888776533 45566666777777777 7777777776654   234556666666


Q ss_pred             HHhcCChHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 047120          260 CVKCGKMDDAQALFDKMPK--RD-V---VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE  333 (634)
Q Consensus       260 ~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  333 (634)
                      |.+.|++++|.+.|+++.+  |+ .   ..+..++..+...                   .+..+...+...|++++|+.
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666654  22 1   3333333321110                   11122334555666666666


Q ss_pred             HHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---
Q 047120          334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---  410 (634)
Q Consensus       334 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---  410 (634)
                      .|+++...  .+.+...+..+...+...|++++|...++.+.+.. +.+..++..++.+|...|++++|+..|+++.   
T Consensus       165 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          165 FLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            66666543  12244555666666666666666666666665542 3345666666666666666666666666654   


Q ss_pred             CCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHH
Q 047120          411 DGSVDHWNAM------------INGLAIHGLGELAFDLLMEMERLSIEPD-----DITFTGLLNACAHAGLVKEGLLCFE  473 (634)
Q Consensus       411 ~~~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~  473 (634)
                      ..+...+..+            +..+...|++++|...|+++.+.  .|+     ...+..+..++.+.|++++|...++
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            1233333333            77888889999999999988874  455     3467788888889999999999999


Q ss_pred             HhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----Chh
Q 047120          474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSA------------CRNYE-----NLN  534 (634)
Q Consensus       474 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~~  534 (634)
                      .+.+.  .+.+...|..++.+|...|++++|.+.++++ ...|+ ...+..+..+            |...|     +.+
T Consensus       320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            88763  1335778888999999999999999999887 55565 4555555532            33334     667


Q ss_pred             HHHHHHHH-HhccCCCCCc----------hHHHHHHHHhcCCCchH
Q 047120          535 VGEPVAKH-LIGMDSSNSS----------SYVLLSNMFAGLGMWND  569 (634)
Q Consensus       535 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~  569 (634)
                      ++.+.+++ +++..|++..          .+..+..+|...|+.++
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            78888886 6777775432          34455555555555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.86  E-value=1.5e-16  Score=171.95  Aligned_cols=482  Identities=12%  Similarity=0.114  Sum_probs=335.6

Q ss_pred             HHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHH----
Q 047120           34 HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCL----  109 (634)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----  109 (634)
                      .+.-+..| ..++.++|+|...|..++.-     ..+++.+        |..-=..++.-||...|+..|.-.|++    
T Consensus       862 LE~~~~~g-~~~~~~hnalakiyid~n~n-----pe~fL~~--------n~~yd~~~vgkyce~rDp~la~iay~~g~~d  927 (1630)
T 1xi4_A          862 LEARIHEG-CEEPATHNALAKIYIDSNNN-----PERFLRE--------NPYYDSRVVGKYCEKRDPHLACVAYERGQCD  927 (1630)
T ss_pred             HHHHHhCC-CCCHHHHHHHHHHHhccCCC-----HHHHhhc--------cCcccHHHHHHHHHhcCcchHHHHhcccCCc
Confidence            44444445 66888999999999987744     3333322        222234677788888888887777664    


Q ss_pred             --HHHCCCCCCcchHHHHHHHHhccCChHHHH-----------HHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHH
Q 047120          110 --MLDNGVSVDKFSASLVLKACSRLGLIEEGL-----------QIHGLLRKVAF--GSDLFLQNCLISLYVRCGYLEFAR  174 (634)
Q Consensus       110 --m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~  174 (634)
                        +++  +.-....|....+-+.+..+.+-=-           ++.++.....+  ..++.--...+..|...|...+|+
T Consensus       928 ~eli~--vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Eai 1005 (1630)
T 1xi4_A          928 LELIN--VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELI 1005 (1630)
T ss_pred             HHHHH--HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHH
Confidence              010  1122223443333333333322111           22222222111  233444456677788888888888


Q ss_pred             HHHhhCCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCC
Q 047120          175 QLFDKMGI-R-----DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER  248 (634)
Q Consensus       175 ~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  248 (634)
                      ++++++.. +     +...-+.++....+. +..+..++..+...  .+   ...+...+...+. .++|..+|++....
T Consensus      1006 eLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~Iai~lgl-yEEAf~IYkKa~~~ 1078 (1630)
T 1xi4_A         1006 ELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIANIAISNEL-FEEAFAIFRKFDVN 1078 (1630)
T ss_pred             HHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHHHHHhCCC-HHHHHHHHHHcCCH
Confidence            88888752 2     234555666666666 55666666655542  12   3335556666777 89999999887421


Q ss_pred             CchHHHHHHHHHH-hcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCC
Q 047120          249 DLISWNSMLHGCV-KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY  327 (634)
Q Consensus       249 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~  327 (634)
                           ...+..+. ..+++++|.++.++.  .+..+|..+..++...|++++|...|.+.  .|...|..++.++.+.|+
T Consensus      1079 -----~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A         1079 -----TSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred             -----HHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCC
Confidence                 11122233 778899999988877  44778889999999999999999999665  667778889999999999


Q ss_pred             chHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHH
Q 047120          328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE  407 (634)
Q Consensus       328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  407 (634)
                      +++|++.|....+.   .++....+.++.+|++.++++....+.    +   .++...+..+...|...|++++|..+|.
T Consensus      1150 yEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A         1150 WEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred             HHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999887744   344444456888888888888655443    1   3455666778999999999999999998


Q ss_pred             hccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH
Q 047120          408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH  487 (634)
Q Consensus       408 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  487 (634)
                      .+     ..|..++.+|.+.|++++|.+.+++.      -+..+|..+..+|...|++..|......+      ..+...
T Consensus      1220 kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~de 1282 (1630)
T 1xi4_A         1220 NV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADE 1282 (1630)
T ss_pred             hh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHH
Confidence            85     48899999999999999999999876      25688988889999999998888766543      235667


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHH--hcCChhHHHHHHHHHhccCC-----CCCchHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEPND-VIWRTLLSACR--NYENLNVGEPVAKHLIGMDS-----SNSSSYVLLS  558 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~  558 (634)
                      +..++..|.+.|.+++|+.+++.. +.+|.. ..|.-|...+.  +.++..++.+.|..-+...|     .++..|..++
T Consensus      1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A         1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence            778999999999999999999876 655553 35655555554  56788888888887777666     6778899999


Q ss_pred             HHHhcCCCchHHHHHH
Q 047120          559 NMFAGLGMWNDARRVR  574 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~  574 (634)
                      .+|.+.|++++|...+
T Consensus      1363 ~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1363 FLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             HHHHhcccHHHHHHHH
Confidence            9999999999998654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=6.4e-19  Score=174.79  Aligned_cols=307  Identities=11%  Similarity=0.057  Sum_probs=179.5

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHH
Q 047120          250 LISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYV  323 (634)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  323 (634)
                      +..+..+...+...|++++|...|+++.+   .+..++..+...+...|++++|...|+++.+   .+...|..+...+.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            34556666777777888888877777653   3466777777777778888888777777653   35567777777888


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCC---CH-hHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHP---DD-ASLVIV------------LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV  387 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p---~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  387 (634)
                      ..|++++|+..|+++.   ...|   +. ..+..+            ...+...|++++|...++.+.+.. +.+...+.
T Consensus        83 ~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            8888888888888777   3455   32 222222            345556666666666666665543 33455566


Q ss_pred             HHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH----------
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFT----------  453 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~----------  453 (634)
                      .+..++...|++++|...++++.   +.+...+..+...+...|++++|...+++..+.  .|+ ...+.          
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence            66666666666666666666554   234455666666666666666666666666553  233 22221          


Q ss_pred             --HHHHHHhccCCHHHHHHHHHHhHHhcCcccCh--hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120          454 --GLLNACAHAGLVKEGLLCFELMRRIHKLEPEL--QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC  527 (634)
Q Consensus       454 --~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  527 (634)
                        .+...+.+.|++++|...++.+.+...-.+..  ..+..+...+.+.|++++|.+.++++ ...| +..++..+...+
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence              12344555666666666666555421111100  12334555555666666666666555 2222 345555555556


Q ss_pred             HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...|++++|...++++++.+|.++..+..+..++.
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            66666666666666666666665555555555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.2e-18  Score=172.87  Aligned_cols=296  Identities=14%  Similarity=0.068  Sum_probs=248.9

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHH
Q 047120          280 DVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVL  355 (634)
Q Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll  355 (634)
                      ++..+..+...+...|++++|...|+++.+   .+..++..+...+...|++++|+..++++...   .| +...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCcchHHHHHH
Confidence            456778889999999999999999998764   45778999999999999999999999999865   45 567888999


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHH------------HHHhHhcCCHHHHHHHHHhcc---CCChhHHH
Q 047120          356 SAIAQLGHIDKGVAIHRYLEKDQFS--LNGKHGVAL------------IDMYSKCGSIENAIKVFEQIE---DGSVDHWN  418 (634)
Q Consensus       356 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~  418 (634)
                      ..+...|++++|...++.+.+....  .+...+..+            ...+...|++++|...++++.   +.+...+.
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  158 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE  158 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            9999999999999999999876420  244455444            578899999999999999876   45777899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHH--------
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYG--------  489 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~--------  489 (634)
                      .+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.   .|+ ...+.        
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~  234 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL  234 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHH
Confidence            99999999999999999999999752 335678999999999999999999999999874   233 22222        


Q ss_pred             ----HHHHHHhccCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120          490 ----CMVDILGRAGHIEAARNLIEDM-PMEPN-D----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN  559 (634)
Q Consensus       490 ----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  559 (634)
                          .++..+.+.|++++|.+.++++ ...|+ .    ..+..+...+...|++++|...++++++.+|.++..+..++.
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  314 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence                3367799999999999999987 33344 3    235567788999999999999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHhCCC
Q 047120          560 MFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       560 ~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +|...|++++|.+.++++.+...
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=6.9e-16  Score=166.94  Aligned_cols=417  Identities=13%  Similarity=0.128  Sum_probs=306.5

Q ss_pred             CcchHHHHHHHHhccCChHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 047120          118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVA--FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY  195 (634)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  195 (634)
                      ++.--....+++...|.+.+|.++++.+.-.+  +.-+....+.|+.+..+. +..+..++.++...-+   ...+...+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence            33344667888889999999999999988432  223456667777776666 5566666666655333   44577888


Q ss_pred             HhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhh
Q 047120          196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK  275 (634)
Q Consensus       196 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  275 (634)
                      ...|.+++|..+|++...   .....+.++.   ..++ +++|.++.++.  .+..+|..+..++...|++++|...|.+
T Consensus      1060 i~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~n-ldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGN-LDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             HhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhh-HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            899999999999999742   1222233333   4455 99999988877  4467788999999999999999999977


Q ss_pred             CCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHH
Q 047120          276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI  353 (634)
Q Consensus       276 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  353 (634)
                      .  .|...|..++..+.+.|++++|.+.|....+  +++...+.++.+|++.+++++....    ..    .|+...+..
T Consensus      1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~----~~n~ad~~~ 1200 (1630)
T 1xi4_A         1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN----GPNNAHIQQ 1200 (1630)
T ss_pred             c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh----CCCHHHHHH
Confidence            6  6778888899999999999999999977653  4444455688999999888853333    21    345567778


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHH
Q 047120          354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA  433 (634)
Q Consensus       354 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  433 (634)
                      +...|...|++++|..+|..+         ..|..++.+|.+.|++++|.+.+++.  .+..+|..+..+|...|++..|
T Consensus      1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999999875         47889999999999999999999987  4568899999999999999988


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh--ccCCHHHHHHHHHhC
Q 047120          434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG--RAGHIEAARNLIEDM  511 (634)
Q Consensus       434 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~  511 (634)
                      ......     +..++..+..++..|.+.|.+++|+++++......  +-....|.-|..+|.  +-++..++.++|..-
T Consensus      1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A         1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred             HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            887664     23356667788889999999999999998776521  223445655666655  455666777776543


Q ss_pred             -CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc------------CCCCCchHHHHHHHHhcCC-------
Q 047120          512 -PMEP------NDVIWRTLLSACRNYENLNVGEPVAKHLIGM------------DSSNSSSYVLLSNMFAGLG-------  565 (634)
Q Consensus       512 -~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~g-------  565 (634)
                       .++|      +...|..+...|.+.|+++.|....-+-...            .+.++..|+..+..|...+       
T Consensus      1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndL 1422 (1630)
T 1xi4_A         1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDL 1422 (1630)
T ss_pred             cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHH
Confidence             4443      4667888888899999999888433222111            3567777777777776665       


Q ss_pred             --------CchHHHHHHH
Q 047120          566 --------MWNDARRVRS  575 (634)
Q Consensus       566 --------~~~~A~~~~~  575 (634)
                              +++++.+++.
T Consensus      1423 l~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1423 LMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HHHhhhcCChHHHHHHHH
Confidence                    6666666665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=9.4e-18  Score=164.27  Aligned_cols=285  Identities=9%  Similarity=0.005  Sum_probs=214.8

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHH
Q 047120          279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIV  354 (634)
Q Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~l  354 (634)
                      .+...+..++..+...|++++|.++|+++.+   .+...+..++..+...|++++|+.+++++...   .| +...+..+
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l   96 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL---YPSNPVSWFAV   96 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHH
Confidence            3445555666666667777777777766643   34455666777777788888888888887754   33 45567777


Q ss_pred             HHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCCh
Q 047120          355 LSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLG  430 (634)
Q Consensus       355 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~  430 (634)
                      ...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.   +.+...+..+...|...|++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence            77777777 7888888888777654 3456677788888888888888888888765   33456777788888889999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------cccChhHHHHHHHHHhccCCHHH
Q 047120          431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK-------LEPELQHYGCMVDILGRAGHIEA  503 (634)
Q Consensus       431 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~  503 (634)
                      ++|...+++..+.. +.+...+..+...+...|++++|...++.+.+...       .+.....+..++..|.+.|++++
T Consensus       176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999888752 23466888888889999999999999988876321       12335678889999999999999


Q ss_pred             HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH-hcCCCch
Q 047120          504 ARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF-AGLGMWN  568 (634)
Q Consensus       504 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~  568 (634)
                      |.+.++++ .. +.+...+..+...+...|++++|...++++++.+|.++..+..++.++ ...|+.+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            99999887 32 335678888888999999999999999999999999999999999988 4556553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=3.9e-18  Score=169.90  Aligned_cols=279  Identities=13%  Similarity=0.029  Sum_probs=213.6

Q ss_pred             HHcCChHHHHH-HhhhCCC-----C--ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCC
Q 047120          292 AKLGRVDIARR-LFDEMPK-----R--DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH  363 (634)
Q Consensus       292 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~  363 (634)
                      ...|++++|.. .|++..+     |  +...+..+...+...|++++|+..|+++...  .+.+...+..+...+...|+
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence            34467777777 6665442     1  3456777888888888888888888888754  13345677777888888888


Q ss_pred             hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHH---------------HHHHHH
Q 047120          364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNA---------------MINGLA  425 (634)
Q Consensus       364 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~  425 (634)
                      +++|...++.+.+.. +.+..++..+..+|...|++++|...++++...   +...+..               .+..+.
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            888888888887764 446777888888888888888888888876522   2222211               233344


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120          426 IHGLGELAFDLLMEMERLSIEPD---DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       426 ~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  502 (634)
                      ..|++++|...++++.+.  .|+   ..++..+...+...|++++|...++.+.+.  .+.+...+..++..|.+.|+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence            889999999999999875  444   678999999999999999999999999874  1335678999999999999999


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------CchHHHHHHHHhcCCCchH
Q 047120          503 AARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-----------SSSYVLLSNMFAGLGMWND  569 (634)
Q Consensus       503 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~  569 (634)
                      +|.+.++++ ...| +..++..+...+...|++++|...++++++..|.+           +..|..++.+|...|++++
T Consensus       269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            999999987 3334 57789999999999999999999999999998877           7899999999999999999


Q ss_pred             HHHHHHHH
Q 047120          570 ARRVRSMM  577 (634)
Q Consensus       570 A~~~~~~~  577 (634)
                      |..++++.
T Consensus       349 A~~~~~~~  356 (368)
T 1fch_A          349 YGAADARD  356 (368)
T ss_dssp             HHHHHTTC
T ss_pred             HHHhHHHH
Confidence            99988643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=2e-17  Score=161.99  Aligned_cols=266  Identities=11%  Similarity=0.040  Sum_probs=229.3

Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047120          310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL  389 (634)
Q Consensus       310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  389 (634)
                      .+...+..++..+...|++++|+++|+++....  +.+...+..++..+...|++++|...++.+.+.. +.+...+..+
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            466778888999999999999999999998652  2344566677788899999999999999998864 4567888999


Q ss_pred             HHHhHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120          390 IDMYSKCG-SIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV  465 (634)
Q Consensus       390 ~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  465 (634)
                      ...+...| ++++|...|+++..   .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            99999999 99999999998763   356789999999999999999999999998853 22356777899999999999


Q ss_pred             HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCChh
Q 047120          466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM----------EPNDVIWRTLLSACRNYENLN  534 (634)
Q Consensus       466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~  534 (634)
                      ++|...++.+.+.  .+.+...+..++..+.+.|++++|...++++ ..          +.+..++..+...+...|+++
T Consensus       176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999873  2445678999999999999999999999877 11          334678999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+..
T Consensus       254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999886553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=2.3e-16  Score=163.36  Aligned_cols=375  Identities=10%  Similarity=-0.005  Sum_probs=270.1

Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCChHHHHHHHh
Q 047120          139 LQIHGLLRKVAFGSDLFLQNCLISLYVR----CGYLEFARQLFDKMGI-RDSVSYNSMIDGYVK----SGNIESARELFD  209 (634)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~  209 (634)
                      ...+....+.|   ++..+..+...|..    .+++++|...|++..+ .+...+..|...|..    .+++++|++.|+
T Consensus        27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            34444444433   55666666666666    6777777777766543 355566666666666    667777777776


Q ss_pred             hCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHH
Q 047120          210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK----CGKMDDAQALFDKMPK-RDVVSW  284 (634)
Q Consensus       210 ~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~  284 (634)
                      +.... .+                                +..+..+...|..    .+++++|...|++..+ .+...+
T Consensus       104 ~a~~~-~~--------------------------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~  150 (490)
T 2xm6_A          104 KAALK-GL--------------------------------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQ  150 (490)
T ss_dssp             HHHHT-TC--------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHC-CC--------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            65442 12                                2233333444444    4556666666655443 345566


Q ss_pred             HHHHHHHHH----cCChHHHHHHhhhCCC-CChhhHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 047120          285 ANMIDGYAK----LGRVDIARRLFDEMPK-RDVVACNAMMGGYVR----NGYSMKALEIFDNMQCELYLHPDDASLVIVL  355 (634)
Q Consensus       285 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll  355 (634)
                      ..|...|..    .++.++|...|++..+ .+...+..+...|..    .++.++|+.+|++....    .+...+..+.
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg  226 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLA  226 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHH
Confidence            667777766    6778888887776553 466777788888887    78888999999888755    2455666666


Q ss_pred             HHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH
Q 047120          356 SAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI  426 (634)
Q Consensus       356 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~  426 (634)
                      ..+..    .++.++|..+++...+.+   ++..+..+..+|..    .+++++|+..|++..+ .++..+..+...|..
T Consensus       227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK  303 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence            66664    788899999998888764   45566677777777    8899999999988764 466778888888888


Q ss_pred             c-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc-
Q 047120          427 H-----GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG---LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR-  497 (634)
Q Consensus       427 ~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  497 (634)
                      .     +++++|+..|++..+.|   +...+..+...+...|   ++++|.++|+++.+.    .+...+..|...|.. 
T Consensus       304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g  376 (490)
T 2xm6_A          304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQG  376 (490)
T ss_dssp             CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred             CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence            7     89999999999998864   4566777777777656   889999999999872    356778888888888 


Q ss_pred             ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCC---CCchHHHHHHHHhc
Q 047120          498 ---AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSS---NSSSYVLLSNMFAG  563 (634)
Q Consensus       498 ---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~  563 (634)
                         .+++++|.+.+++.-...+...+..|...|..    .+++++|...|+++.+.+|.   ++.....++.++..
T Consensus       377 ~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          377 KGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence               89999999999987323467788888888887    89999999999999999854   66777777776654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=1.8e-17  Score=161.17  Aligned_cols=237  Identities=14%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             cCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 047120           58 SSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE  137 (634)
Q Consensus        58 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  137 (634)
                      +.|+.   ++|.++++++.    .|  .+|..+..++.+.|++++|++.|.+      .+|..+|..++.++...|++++
T Consensus        15 ~~~~l---d~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           15 HIGNL---DRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCH---HHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHH
Confidence            56667   99999999984    33  4899999999999999999999965      2678899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC
Q 047120          138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN  217 (634)
Q Consensus       138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  217 (634)
                      |..+++..++.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.++..|...|.+++|...|..+      
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            99988877774  45678899999999999999999888863   67789999999999999999999999987      


Q ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 047120          218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV  297 (634)
Q Consensus       218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~  297 (634)
                       ..|..+..++.+.|+ ++.|.+.+.++  .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++
T Consensus       149 -~n~~~LA~~L~~Lg~-yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          149 -SNFGRLASTLVHLGE-YQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             -TCHHHHHHHHHTTTC-HHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             -hhHHHHHHHHHHhcc-HHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence             357788888888888 88888887777  367777777777777777777766666544 3333344566667777777


Q ss_pred             HHHHHHhhhCCC---CChhhHHHHHHHHHHc
Q 047120          298 DIARRLFDEMPK---RDVVACNAMMGGYVRN  325 (634)
Q Consensus       298 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~  325 (634)
                      ++|..+++....   .....|+.+.-.|++-
T Consensus       224 eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          224 EELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            777777666553   2334555555555544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=1.2e-15  Score=159.83  Aligned_cols=413  Identities=10%  Similarity=0.042  Sum_probs=279.1

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh
Q 047120          142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL  218 (634)
Q Consensus       142 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  218 (634)
                      ++..++.. +-+...|..++. +.+.|++++|..+|+++..  | +...|..++..+.+.|++++|.++|+++....|+.
T Consensus         2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~   79 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI   79 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred             hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence            34444443 336778888888 4778999999999998864  3 56689999999999999999999999999888887


Q ss_pred             hHHHHHHHHHH-hcCCcHHHHH----HHHhhCCC------CCchHHHHHHHHHHh---------cCChHHHHHHHhhCCC
Q 047120          219 ISWNSVLNGYA-QLKSGLQFAW----QIFEKMPE------RDLISWNSMLHGCVK---------CGKMDDAQALFDKMPK  278 (634)
Q Consensus       219 ~~~~~ll~~~~-~~~~~~~~a~----~~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~  278 (634)
                      ..|...+.... ..++ .+.|.    .+|++...      ++...|...+....+         .|+++.|..+|++..+
T Consensus        80 ~lw~~~~~~~~~~~~~-~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGK-LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHHHHHHHHHTTT-STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence            77776665332 2333 44443    35554421      234556555554443         5667777777766654


Q ss_pred             -CCh---hHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH------Hhc--CCCCC
Q 047120          279 -RDV---VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM------QCE--LYLHP  346 (634)
Q Consensus       279 -~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m------~~~--~~~~p  346 (634)
                       |..   ..|..........|. ..+..++.                 ...+++..|..+++..      ...  ..+.|
T Consensus       159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence             221   122221111100110 01111111                 0223455666655542      111  01234


Q ss_pred             CH--------hHHHHHHHHHHc----cCCh----HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh-------cCCHH---
Q 047120          347 DD--------ASLVIVLSAIAQ----LGHI----DKGVAIHRYLEKDQFSLNGKHGVALIDMYSK-------CGSIE---  400 (634)
Q Consensus       347 ~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~---  400 (634)
                      +.        ..|...+.....    .++.    +.+..+|++++... +.++..|..++..+.+       .|+++   
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~  299 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK  299 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence            31        234333332221    1233    36777888887753 5577888888888875       68876   


Q ss_pred             ----HHHHHHHhccC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 047120          401 ----NAIKVFEQIED---G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD--ITFTGLLNACAHAGLVKEGLL  470 (634)
Q Consensus       401 ----~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~  470 (634)
                          +|..+|++..+   | +...|..++..+.+.|++++|..+|+++.+.  .|+.  ..|..++..+.+.|++++|..
T Consensus       300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~  377 (530)
T 2ooe_A          300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM  377 (530)
T ss_dssp             HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence                89999998763   3 5678999999999999999999999999984  5653  478888888889999999999


Q ss_pred             HHHHhHHhcCccc-ChhHHHHHHHH-HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          471 CFELMRRIHKLEP-ELQHYGCMVDI-LGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       471 ~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      +|+.+.+.   .| +...|...+.. +...|++++|.++|++. ...| +...|..++..+.+.|+.++|..+|+++++.
T Consensus       378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            99999873   23 23333332222 34689999999999987 3334 5788999999999999999999999999999


Q ss_pred             CCCCCc----hHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          547 DSSNSS----SYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       547 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .|.+|.    .|..++......|+.+.+..+.+++.+.-
T Consensus       455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            877766    78888888888999999999999986653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=1.2e-15  Score=157.98  Aligned_cols=318  Identities=10%  Similarity=-0.055  Sum_probs=262.9

Q ss_pred             CchHHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHhhhCCC-CChhhHHHH
Q 047120          249 DLISWNSMLHGCVK----CGKMDDAQALFDKMPK-RDVVSWANMIDGYAK----LGRVDIARRLFDEMPK-RDVVACNAM  318 (634)
Q Consensus       249 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l  318 (634)
                      +...+..+...|..    .+++++|.+.|++..+ .+...+..|...|..    .+++++|...|++..+ .++..+..+
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L  153 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM  153 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            33444555556666    6778888888877654 467788889999988    8899999999998765 466788888


Q ss_pred             HHHHHH----cCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120          319 MGGYVR----NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHGVALI  390 (634)
Q Consensus       319 ~~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  390 (634)
                      ...|..    .++.++|++.|++..+. +   +...+..+...+..    .++.++|...++...+.+   ++..+..+.
T Consensus       154 g~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  226 (490)
T 2xm6_A          154 GDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLA  226 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            888887    78999999999999865 2   56777788888877    899999999999999875   566777888


Q ss_pred             HHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120          391 DMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH  461 (634)
Q Consensus       391 ~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  461 (634)
                      .+|..    .+++++|...|++..+ .++..+..+...|..    .++.++|+..|++..+.|   +...+..+...+..
T Consensus       227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK  303 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence            88886    8899999999998764 467788888888888    899999999999998764   55677777777777


Q ss_pred             c-----CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 047120          462 A-----GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG---HIEAARNLIEDMPMEPNDVIWRTLLSACRN----  529 (634)
Q Consensus       462 ~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----  529 (634)
                      .     +++++|...++.+.+ .   .+...+..+...|.+.|   ++++|++.+++.-...+...+..|...|..    
T Consensus       304 ~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~  379 (490)
T 2xm6_A          304 GAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV  379 (490)
T ss_dssp             CBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred             CCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence            6     899999999999987 2   34567778888888767   889999999988323578888899999988    


Q ss_pred             cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCC
Q 047120          530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+++++|...++++.+.+  ++..+..|+.+|..    .+++++|...+++..+.+.
T Consensus       380 ~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          380 KKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            899999999999999875  57899999999998    8999999999999988773

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=8.9e-16  Score=160.69  Aligned_cols=415  Identities=11%  Similarity=0.035  Sum_probs=287.1

Q ss_pred             HHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 047120          107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RD  184 (634)
Q Consensus       107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~  184 (634)
                      |++.++.. +-+...|..++.. .+.|++++|..+|+++++.- +.+...|..++..+.+.|++++|.++|++...  |+
T Consensus         2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            44555422 2355578888884 77899999999999999863 44677899999999999999999999999864  67


Q ss_pred             hhHHHHHHHHH-HhCCChHHHHH----HHhhCccC----CCChhHHHHHHHHHHh---------cCCcHHHHHHHHhhCC
Q 047120          185 SVSYNSMIDGY-VKSGNIESARE----LFDSMPIR----ERNLISWNSVLNGYAQ---------LKSGLQFAWQIFEKMP  246 (634)
Q Consensus       185 ~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~----~p~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~  246 (634)
                      ...|...+... ...|+.++|.+    +|++....    .++...|...+.....         .++ ++.|..+|++..
T Consensus        79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~a~~~y~~al  157 (530)
T 2ooe_A           79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR-ITAVRRVYQRGC  157 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH-HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH-HHHHHHHHHHHH
Confidence            77777777533 45677777665    66665432    2345667666665543         456 999999999988


Q ss_pred             C-CCc---hHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhh-------CC------C
Q 047120          247 E-RDL---ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE-------MP------K  309 (634)
Q Consensus       247 ~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~  309 (634)
                      . |+.   ..|..........|. ..+..++..                 +.++++.|..++..       +.      .
T Consensus       158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  219 (530)
T 2ooe_A          158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVP  219 (530)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred             hchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence            7 432   222222221111111 111111111                 12334444433332       11      1


Q ss_pred             CC--------hhhHHHHHHHHHHc----CCc----hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc-------cCChH-
Q 047120          310 RD--------VVACNAMMGGYVRN----GYS----MKALEIFDNMQCELYLHPDDASLVIVLSAIAQ-------LGHID-  365 (634)
Q Consensus       310 ~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-  365 (634)
                      |+        ...|...+......    ++.    .+++.+|++....  .+-+...|......+.+       .|+++ 
T Consensus       220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~  297 (530)
T 2ooe_A          220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNN  297 (530)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence            11        23555555433322    232    3778899988865  22345667766666654       68887 


Q ss_pred             ------HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--CC-Ch-hHHHHHHHHHHHcCChHHHHH
Q 047120          366 ------KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--DG-SV-DHWNAMINGLAIHGLGELAFD  435 (634)
Q Consensus       366 ------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~~~~~~A~~  435 (634)
                            +|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.  .| +. ..|..++..+.+.|+.++|.+
T Consensus       298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~  377 (530)
T 2ooe_A          298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  377 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence                  889999988863345568889999999999999999999999876  23 33 479999999999999999999


Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--
Q 047120          436 LLMEMERLSIEPD-DITFTGLLNA-CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--  511 (634)
Q Consensus       436 ~~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--  511 (634)
                      +|++..+.  .|+ ...|...+.. +...|++++|..+|+.+.+..  +.+...|..++..+.+.|+.++|..+|+++  
T Consensus       378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence            99999875  333 3333333222 335899999999999998742  335778999999999999999999999987  


Q ss_pred             --CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          512 --PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       512 --~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                        +..|+  ...|...+......|+.+.+..+.+++.+..|.
T Consensus       454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence              22333  448888888888899999999999999998874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=2e-17  Score=164.65  Aligned_cols=261  Identities=11%  Similarity=0.001  Sum_probs=207.9

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120          311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI  390 (634)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  390 (634)
                      +...|..+...+.+.|++++|+.+|+++...  .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            4456888888888889999999999888854  13356778888888888899999999988888764 44577888888


Q ss_pred             HHhHhcCCHHHHHHHHHhccCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 047120          391 DMYSKCGSIENAIKVFEQIEDGS-------------VDHWNAMINGLAIHGLGELAFDLLMEMERLSIE-PDDITFTGLL  456 (634)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll  456 (634)
                      .+|...|++++|+..|+++.+.+             ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            89999999999999988876322             123344578889999999999999999986322 1577899999


Q ss_pred             HHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 047120          457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLN  534 (634)
Q Consensus       457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~  534 (634)
                      ..+...|++++|...++.+.+..  +.+..+|..++.+|.+.|++++|++.++++ ...|+ ..++..+...|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            99999999999999999998742  345778999999999999999999999987 43454 788999999999999999


Q ss_pred             HHHHHHHHHhccCCC------------CCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120          535 VGEPVAKHLIGMDSS------------NSSSYVLLSNMFAGLGMWNDARRVRSM  576 (634)
Q Consensus       535 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  576 (634)
                      +|...+++++++.|.            +...|..++.++...|+.+.+..+.++
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999998866            367899999999999999988887754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=4.6e-17  Score=162.14  Aligned_cols=277  Identities=14%  Similarity=0.044  Sum_probs=205.1

Q ss_pred             CChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH-HHHHHHhcCCCCC--CHhHHHHHHHHHHccCChHHHHHHH
Q 047120          295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE-IFDNMQCELYLHP--DDASLVIVLSAIAQLGHIDKGVAIH  371 (634)
Q Consensus       295 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~  371 (634)
                      +.++.+...|+.+...+..       ++...|++++|++ .|++......-.|  +...+..+...+...|++++|...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~   87 (368)
T 1fch_A           15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF   87 (368)
T ss_dssp             --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3444455555555443322       3445688999998 8887763311222  2456778889999999999999999


Q ss_pred             HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047120          372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD  448 (634)
Q Consensus       372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  448 (634)
                      +.+.+.. +.+...+..+..++...|++++|...|+++.   +.+..++..+...|...|++++|...++++...  .|+
T Consensus        88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~  164 (368)
T 1fch_A           88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA  164 (368)
T ss_dssp             HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence            9999874 5577889999999999999999999999876   457789999999999999999999999999986  343


Q ss_pred             HH-HHHH---------------HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-
Q 047120          449 DI-TFTG---------------LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-  511 (634)
Q Consensus       449 ~~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  511 (634)
                      .. .+..               .+..+...|++++|...++.+.+.....++..++..++..|.+.|++++|++.++++ 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  244 (368)
T 1fch_A          165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL  244 (368)
T ss_dssp             TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            22 2211               233344899999999999999884322225778999999999999999999999987 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          512 PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       512 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ...| +..+|..++..+...|++++|+..++++++..|.++..+..++.+|.+.|++++|...++++.+..
T Consensus       245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3334 578999999999999999999999999999999999999999999999999999999999997653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=1.2e-16  Score=155.33  Aligned_cols=349  Identities=12%  Similarity=0.047  Sum_probs=122.4

Q ss_pred             hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhC
Q 047120          166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM  245 (634)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~  245 (634)
                      +.|++++|.++++++..|  .+|..|+.++.+.|++++|++.|.+.    +|..+|..++..+...|+ +++|...++..
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~-~EeAi~yl~~a   87 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGN-WEELVKYLQMA   87 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence            567788888888888554  48888888888888888888888653    455566666666555555 55555544444


Q ss_pred             CC--CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHH
Q 047120          246 PE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV  323 (634)
Q Consensus       246 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  323 (634)
                      .+  +++.+.                               +.++.+|.+.|+++++.++++   .|+..+|+.++..|.
T Consensus        88 rk~~~~~~i~-------------------------------~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~  133 (449)
T 1b89_A           88 RKKARESYVE-------------------------------TELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCY  133 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTT---CC-------------
T ss_pred             HHhCccchhH-------------------------------HHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence            33  233444                               444444444454444444443   234445555555555


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI  403 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  403 (634)
                      ..|.+++|..+|..+          ..|..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|.
T Consensus       134 ~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~  197 (449)
T 1b89_A          134 DEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ  197 (449)
T ss_dssp             ---CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence            555555555555543          13445555555555555555555444      14455555555555555555554


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh--ccCCHHHHHHHHHHhHHhcC
Q 047120          404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACA--HAGLVKEGLLCFELMRRIHK  480 (634)
Q Consensus       404 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~  480 (634)
                      .....+. ..+.....++..|.+.|++++|+.+++.....  .+- ...|+-+.-+++  +.+++.+.++.|..-   -+
T Consensus       198 ~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---in  271 (449)
T 1b89_A          198 MCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VN  271 (449)
T ss_dssp             HTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SC
T ss_pred             HHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hc
Confidence            4444333 23333445666667777777777777766633  332 334444444443  344555555554422   23


Q ss_pred             ccc------ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-------------CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120          481 LEP------ELQHYGCMVDILGRAGHIEAARNLIEDM-PM-------------EPNDVIWRTLLSACRNYENLNVGEPVA  540 (634)
Q Consensus       481 ~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------------~p~~~~~~~l~~~~~~~g~~~~a~~~~  540 (634)
                      ++|      +...|..++-.|...++++.|....-+- +.             ..+...|...+..|.  +....+..-+
T Consensus       272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~l  349 (449)
T 1b89_A          272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDL  349 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHH
Confidence            344      4667888888888888888887765554 22             122333433444433  2222223323


Q ss_pred             HHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       541 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      ..++.-    .--....+..+.+.|.+.-+..+++.+.+.+.+
T Consensus       350 l~~l~~----~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~  388 (449)
T 1b89_A          350 LMVLSP----RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK  388 (449)
T ss_dssp             HHHHGG----GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCH
T ss_pred             HHHHHh----ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence            232200    011244555566666666666666666655543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=5.9e-16  Score=147.69  Aligned_cols=267  Identities=12%  Similarity=0.037  Sum_probs=193.9

Q ss_pred             HHHcCChHHHHHHhhhCCCCCh----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHH
Q 047120          291 YAKLGRVDIARRLFDEMPKRDV----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK  366 (634)
Q Consensus       291 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~  366 (634)
                      ....|++..|+..++.....++    .....+.++|...|+++.|+..++..     -.|+..++..+...+...++.++
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHH
Confidence            3445666666666666554322    23344566777777777777655431     24555666777777777777788


Q ss_pred             HHHHHHHHHHcCC-CCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047120          367 GVAIHRYLEKDQF-SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI  445 (634)
Q Consensus       367 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  445 (634)
                      |++.++.+...+. +.++..+..+..++...|++++|++.+++  ..+...+..++..|.+.|++++|.+.|+++.+.  
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--  159 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--  159 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence            8887777776654 33556667777888899999999999988  567778888999999999999999999999876  


Q ss_pred             CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHH
Q 047120          446 EPDDITF---TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIW  520 (634)
Q Consensus       446 ~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~  520 (634)
                      .|+....   ...+..+...|++++|..+|+++.+.  .+.+...++.+..++.+.|++++|.+.++++ ...| +..++
T Consensus       160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            4664311   12334445668999999999999874  3456778899999999999999999999987 4344 57788


Q ss_pred             HHHHHHHHhcCChhH-HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHH
Q 047120          521 RTLLSACRNYENLNV-GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR  572 (634)
Q Consensus       521 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  572 (634)
                      ..++..+...|+.++ +.++++++++.+|.++.+..    ...+.+.++++..
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~  286 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL  286 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence            889988888998875 57899999999999886543    4444455555444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=2.3e-16  Score=150.55  Aligned_cols=248  Identities=9%  Similarity=0.026  Sum_probs=205.8

Q ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120          319 MGGYVRNGYSMKALEIFDNMQCELYLHPDD--ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC  396 (634)
Q Consensus       319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (634)
                      ++.....|++..|+..++...   ...|+.  .....+..++...|+++.|...++.    .-+|+...+..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence            456678899999999998876   445654  3556678899999999999986644    2456778888899999999


Q ss_pred             CCHHHHHHHHHhcc----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120          397 GSIENAIKVFEQIE----DG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       397 ~~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      ++.++|++.++++.    .| +...+..+...+...|++++|++.+++      ..+...+..++..+.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999864    13 566788888999999999999999987      34677899999999999999999999


Q ss_pred             HHHhHHhcCcccChhH---HHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          472 FELMRRIHKLEPELQH---YGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      ++.+.+.   .|+...   ...++..+...|++++|..+|+++  ..+.+...++.+..++.+.|++++|+..++++++.
T Consensus       153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999874   355321   123445555679999999999998  34566889999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcCCCchH-HHHHHHHHHhCCC
Q 047120          547 DSSNSSSYVLLSNMFAGLGMWND-ARRVRSMMKERNL  582 (634)
Q Consensus       547 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~  582 (634)
                      +|.++.++..++.++...|+.++ +.++++++.+...
T Consensus       230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999986 5789998876544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=5.8e-16  Score=159.88  Aligned_cols=369  Identities=13%  Similarity=0.012  Sum_probs=209.5

Q ss_pred             ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC-CCchHHHHHHHHHHh
Q 047120          184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHGCVK  262 (634)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~  262 (634)
                      ....||.|...+...|++++|++.|++..+.                       .......-.. ....+|+.+..+|..
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-----------------------~~~~~~~~~~~~~~~~~~nla~~y~~  106 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL-----------------------IQQEHADQAEIRSLVTWGNYAWVYYH  106 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------HHHHSGGGCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------------HHhcCccccchHHHHHHHHHHHHHHH
Confidence            3457888889999999999999888766431                       0000000000 122344445555555


Q ss_pred             cCChHHHHHHHhhCCC-----------CChhHHHHHHHHHHHc--CChHHHHHHhhhCCC--C-ChhhHHHHHHH---HH
Q 047120          263 CGKMDDAQALFDKMPK-----------RDVVSWANMIDGYAKL--GRVDIARRLFDEMPK--R-DVVACNAMMGG---YV  323 (634)
Q Consensus       263 ~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~  323 (634)
                      .|++++|...+++..+           ....++..+..++.+.  +++++|...|++..+  | ++..+..+..+   +.
T Consensus       107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            5555555555444321           1234455454444443  346777777766543  2 33344444333   33


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIA----QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS  398 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  398 (634)
                      ..++.++|++.+++....   .|+ ...+..+...+.    ..++.++|...++...+.. +.+..++..+...|...|+
T Consensus       187 ~~~~~~~al~~~~~al~l---~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~  262 (472)
T 4g1t_A          187 NWPPSQNAIDPLRQAIRL---NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE  262 (472)
T ss_dssp             HSCCCCCTHHHHHHHHHH---CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence            456667777777777643   343 334444433333    3356667777777766653 4455667777777777777


Q ss_pred             HHHHHHHHHhcc---CCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047120          399 IENAIKVFEQIE---DGSVDHWNAMINGLAI-------------------HGLGELAFDLLMEMERLSIEPD-DITFTGL  455 (634)
Q Consensus       399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l  455 (634)
                      +++|...++++.   +.+..++..+..+|..                   .+..+.|...+++..+.  .|+ ..++..+
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l  340 (472)
T 4g1t_A          263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSIL  340 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhH
Confidence            777777777665   2344455555555432                   22356788888887764  344 4577788


Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCcccCh--hHHHHHHH-HHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 047120          456 LNACAHAGLVKEGLLCFELMRRIHKLEPEL--QHYGCMVD-ILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYE  531 (634)
Q Consensus       456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g  531 (634)
                      ...+...|++++|...|+++... ...+..  ..+..+.. .+...|++++|+..+++. .+.|+.......        
T Consensus       341 g~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~--------  411 (472)
T 4g1t_A          341 ASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--------  411 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred             HHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence            88899999999999999988763 222211  12333333 245788999999999887 566765433322        


Q ss_pred             ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEE
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI  591 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  591 (634)
                       ...+.+++++.++.+|.++.+|..++.+|...|++++|++.+++..+.+.......+|+
T Consensus       412 -~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             -HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence             34456778888899999999999999999999999999999999988765432233443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=1.1e-16  Score=156.41  Aligned_cols=259  Identities=7%  Similarity=-0.087  Sum_probs=197.5

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM  392 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  392 (634)
                      ..+..+...+...|++++|+.+|+++...  .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            44566666777777777777777777644  12244566666677777777777777777776653 3456667777777


Q ss_pred             hHhcCCHHHHHHHHHhccCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047120          393 YSKCGSIENAIKVFEQIEDG---SVDHWNAM--------------IN-GLAIHGLGELAFDLLMEMERLSIEPDDITFTG  454 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  454 (634)
                      +...|++++|...++++...   +...+..+              .. .+...|++++|...++++.+.. +.+...+..
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  177 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS  177 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            77777777777777766521   22223222              22 3677888999999999998753 235778899


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYEN  532 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~  532 (634)
                      +...+...|++++|...++.+.+..  +.+...+..++..+...|++++|.+.++++ ... .+..++..+...+...|+
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~  255 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ  255 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998732  345678899999999999999999999987 333 457789999999999999


Q ss_pred             hhHHHHHHHHHhccCCC------------CCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          533 LNVGEPVAKHLIGMDSS------------NSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       533 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      +++|...++++++..|.            ++..+..++.++.+.|++++|..++++.
T Consensus       256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999998            7889999999999999999999998754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=2.6e-16  Score=156.55  Aligned_cols=232  Identities=8%  Similarity=-0.040  Sum_probs=195.9

Q ss_pred             CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHH
Q 047120          347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMING  423 (634)
Q Consensus       347 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~  423 (634)
                      +...+..+...+.+.|++++|..+++.+.+.. +.+...+..+..+|...|++++|+..|+++.   +.+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34458888899999999999999999999875 5578899999999999999999999999886   3467899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH
Q 047120          424 LAIHGLGELAFDLLMEMERLSIEPDD-----------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV  492 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  492 (634)
                      |...|++++|+..++++.+.  .|+.           ..+..+...+...|++++|..+++.+.+.....++...+..++
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999874  3442           2233457889999999999999999988533222578899999


Q ss_pred             HHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120          493 DILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA  570 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  570 (634)
                      ..|.+.|++++|++.++++ .. +.+..+|..++.+|...|++++|+..++++++..|.++..+..++.+|.+.|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999997 33 345789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 047120          571 RRVRSMMKERN  581 (634)
Q Consensus       571 ~~~~~~~~~~~  581 (634)
                      ...++++.+..
T Consensus       301 ~~~~~~al~~~  311 (365)
T 4eqf_A          301 VSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999997654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=9.7e-15  Score=150.67  Aligned_cols=342  Identities=10%  Similarity=-0.060  Sum_probs=172.9

Q ss_pred             hHHHHHHHHHHhCCChHHHHHHHhhCccC--------CCC-hhHHHHHHHHHHhcC-CcHHHHHHHHhhCCC--CC-chH
Q 047120          186 VSYNSMIDGYVKSGNIESARELFDSMPIR--------ERN-LISWNSVLNGYAQLK-SGLQFAWQIFEKMPE--RD-LIS  252 (634)
Q Consensus       186 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~p~-~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~--~~-~~~  252 (634)
                      .+|+.+..+|...|++++|...+++....        .++ ..++.....++...+ +..++|...|++..+  |+ +..
T Consensus        95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~  174 (472)
T 4g1t_A           95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF  174 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence            35555555555566666655555544321        122 234444444443332 227788888877655  33 333


Q ss_pred             HHHHHHH---HHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHH----cCChHHHHHHhhhCCC---CChhhHHHHH
Q 047120          253 WNSMLHG---CVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAK----LGRVDIARRLFDEMPK---RDVVACNAMM  319 (634)
Q Consensus       253 ~~~l~~~---~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~  319 (634)
                      +..+..+   +...++.++|++.+++..+   .+..++..+...+..    .|+.++|.+.+++...   .+..++..+.
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg  254 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA  254 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            3333333   3344666666666665542   334444444444333    3455666666665432   3445666666


Q ss_pred             HHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047120          320 GGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS  398 (634)
Q Consensus       320 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  398 (634)
                      ..|...|++++|+..+++..+.   .|+ ...+..+...+...+...         .... .      ..........+.
T Consensus       255 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~  315 (472)
T 4g1t_A          255 KFYRRKDEPDKAIELLKKALEY---IPNNAYLHCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLEL  315 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHH
T ss_pred             HHHHHcCchHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhh
Confidence            6777777777777777766643   343 233433333332111000         0000 0      000001111233


Q ss_pred             HHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHH
Q 047120          399 IENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI--TFTGLLN-ACAHAGLVKEGLLCF  472 (634)
Q Consensus       399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~  472 (634)
                      ++.|...+++..   ..+...+..+...|...|++++|+..|++..+....|...  .+..+.. .....|++++|+..|
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y  395 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF  395 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            567777777665   3456688999999999999999999999998864333221  2333332 345789999999999


Q ss_pred             HHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      +++.+.   .|+.......         ...+.+++++. . .+.+..+|..+...+...|++++|++.|+++++.+|.+
T Consensus       396 ~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~  463 (472)
T 4g1t_A          396 IEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI  463 (472)
T ss_dssp             HHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred             HHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            998773   4543322222         22333444443 2 23457789999999999999999999999999999999


Q ss_pred             CchHHHHH
Q 047120          551 SSSYVLLS  558 (634)
Q Consensus       551 ~~~~~~l~  558 (634)
                      |.++..+|
T Consensus       464 p~a~~~~G  471 (472)
T 4g1t_A          464 PSASSWNG  471 (472)
T ss_dssp             --------
T ss_pred             CcHhhcCC
Confidence            88777665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=2.1e-17  Score=173.23  Aligned_cols=154  Identities=14%  Similarity=0.110  Sum_probs=127.5

Q ss_pred             CCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhcc---ccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCc
Q 047120           43 IKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK  119 (634)
Q Consensus        43 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  119 (634)
                      .--..+||+||.+|++.|++   ++|..+|++|.   ..|..||++|||+||.+||+.|+.++|.++|++|.+.|+.||.
T Consensus       124 ~~~~~TynaLIdglcK~G~l---eeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv  200 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQL---PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL  200 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HhHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence            33446899999999999998   99999998875   3478999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhccCCh-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHH
Q 047120          120 FSASLVLKACSRLGLI-EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMID  193 (634)
Q Consensus       120 ~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~  193 (634)
                      .||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+     ...+...|.+
T Consensus       201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence            9999999999999985 789999999999999999999999998877765555555554444321     1233344555


Q ss_pred             HHHhCC
Q 047120          194 GYVKSG  199 (634)
Q Consensus       194 ~~~~~g  199 (634)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.67  E-value=6.5e-15  Score=143.76  Aligned_cols=267  Identities=10%  Similarity=0.017  Sum_probs=142.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcC
Q 047120          253 WNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNG  326 (634)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g  326 (634)
                      +..+...+...|++++|..+|+++.+   .+...+..+...+...|++++|...|+++.+   .+..++..+...+...|
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence            34445555556666666666555432   2344455555555555555555555554432   23444555555555555


Q ss_pred             CchHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH-HH-HhHhcCCHHHHH
Q 047120          327 YSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL-ID-MYSKCGSIENAI  403 (634)
Q Consensus       327 ~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~  403 (634)
                      ++++|+..++++...   .|+.. .+..+...+                      ++......+ .. .+...|++++|.
T Consensus       104 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          104 NANAALASLRAWLLS---QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             CHHHHHHHHHHHHHT---STTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh---CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence            555555555555532   22211 111110000                      000000001 11 245556666666


Q ss_pred             HHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120          404 KVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK  480 (634)
Q Consensus       404 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  480 (634)
                      ..++++.   ..+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  236 (327)
T 3cv0_A          159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-  236 (327)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence            6666554   2345566666666666777777777776666541 2234566666667777777777777777666521 


Q ss_pred             cccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-------------NDVIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                       +.+...+..++..|.+.|++++|.+.++++ ...|             +...|..+..++...|++++|..+++++++.
T Consensus       237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence             223556666777777777777777777665 2222             2556667777777777777777777666554


Q ss_pred             C
Q 047120          547 D  547 (634)
Q Consensus       547 ~  547 (634)
                      .
T Consensus       316 ~  316 (327)
T 3cv0_A          316 F  316 (327)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1e-14  Score=136.87  Aligned_cols=218  Identities=7%  Similarity=-0.057  Sum_probs=156.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-C-------hhHHHHH
Q 047120          351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-S-------VDHWNAM  420 (634)
Q Consensus       351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-------~~~~~~l  420 (634)
                      +..+...+...|++++|..+++.+.+..  .+...+..+..++...|++++|...++++.+  | +       ...|..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3344444444555555555555544443  4444555555555555555555555555431  1 1       4567777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      ...|...|++++|...+++..+.  .|+.       ..+...|++++|...++.+...  .+.+...+..++..+...|+
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence            88888888888888888888774  4553       3355667888888888888762  23345678888888999999


Q ss_pred             HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          501 IEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       501 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      +++|.+.++++ . .+.+..+|..+...+...|++++|...++++++.+|.++..+..++.+|...|++++|.+.++++.
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999887 2 234577888889899999999999999999999999999999999999999999999999999886


Q ss_pred             hCC
Q 047120          579 ERN  581 (634)
Q Consensus       579 ~~~  581 (634)
                      +..
T Consensus       235 ~~~  237 (258)
T 3uq3_A          235 TKD  237 (258)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=4.7e-15  Score=135.06  Aligned_cols=194  Identities=13%  Similarity=0.066  Sum_probs=153.6

Q ss_pred             CCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047120          380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGL  455 (634)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l  455 (634)
                      ++++..+..+...+.+.|++++|+..|++..+   .++..|..+...+.+.|++++|+..+++..+.  .|+ ...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            45666777788888888888888888887653   36678888889999999999999999998875  555 5688888


Q ss_pred             HHHHhcc-----------CCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHH
Q 047120          456 LNACAHA-----------GLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRT  522 (634)
Q Consensus       456 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~  522 (634)
                      ..++...           |++++|+..++++.+.   .| +...+..+..+|...|++++|++.|+++ ....+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence            8888888           9999999999999874   34 4677889999999999999999999987 22277889999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      +..++...|++++|+..++++++.+|.++..+..++.++...|++++|++.+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.9e-14  Score=135.01  Aligned_cols=236  Identities=11%  Similarity=-0.014  Sum_probs=186.7

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCc----hhHH
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF--SLN----GKHG  386 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~  386 (634)
                      ..|..+...+...|++++|+..|+++... .  .+...+..+...+...|++++|...++.+.+...  .++    ...+
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            45677778888888888888888888866 3  6677788888888888888888888888776421  111    5777


Q ss_pred             HHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCH
Q 047120          387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLV  465 (634)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~  465 (634)
                      ..+..++...|++++|...|+++...++.     ...+...|++++|...++++...  .|+ ...+..+...+...|++
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence            88888888999999999988887632211     24566778899999999998875  454 45788888899999999


Q ss_pred             HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120          466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                      ++|...++.+.+..  +.+...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++
T Consensus       156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999998742  345778889999999999999999999987 3334 4778899999999999999999999999


Q ss_pred             hccC------CCCCchHHHHHHH
Q 047120          544 IGMD------SSNSSSYVLLSNM  560 (634)
Q Consensus       544 ~~~~------p~~~~~~~~l~~~  560 (634)
                      ++..      |.+...+..+..+
T Consensus       234 ~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          234 RTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhChhhcCCCchHHHHHHHHHh
Confidence            9998      7777666666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=3.1e-14  Score=135.10  Aligned_cols=242  Identities=11%  Similarity=-0.067  Sum_probs=187.9

Q ss_pred             HcCCchHHHHHHHHHHhcCCCCC--CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHP--DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN  401 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  401 (634)
                      ..|++++|+..|+++.......+  +...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            34678888888888885421112  34577778888888899999999988888764 4467888889999999999999


Q ss_pred             HHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 047120          402 AIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI  478 (634)
Q Consensus       402 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  478 (634)
                      |...|+++.   +.+...+..+...|...|++++|...++++.+.  .|+.......+..+...|++++|...++.+...
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999998876   346778999999999999999999999999874  566555555555667789999999999888763


Q ss_pred             cCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       479 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                        .+++...+ .++..+...++.++|.+.++++ ...|+     ..++..+...+...|++++|...++++++.+|.+..
T Consensus       174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence              23344444 4777888889999999999887 43332     468888999999999999999999999999987644


Q ss_pred             hHHHHHHHHhcCCCchHHHHHH
Q 047120          553 SYVLLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       553 ~~~~l~~~~~~~g~~~~A~~~~  574 (634)
                         ..+.++...|++++|++.+
T Consensus       251 ---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 ---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---HHHHHHHHHHHHHHC----
T ss_pred             ---HHHHHHHHHHHHHhhHHHH
Confidence               4467788889999988776

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=4.2e-14  Score=134.04  Aligned_cols=245  Identities=11%  Similarity=-0.026  Sum_probs=151.3

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHH
Q 047120          314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN--GKHGVALI  390 (634)
Q Consensus       314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~  390 (634)
                      .+......+...|++++|+..|++....   .|+ ...+..+...+...|++++|...++.+.+....++  ...+..+.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3444555666666666666666666643   332 23555566666666666666666666665321111  22356666


Q ss_pred             HHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 047120          391 DMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVK  466 (634)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~  466 (634)
                      .++...|++++|+..|+++.   +.+...|..+...|...|++++|+..+++..+.  .|+ ...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence            66777777777777776654   234556777777777777777777777776654  343 445555552333445777


Q ss_pred             HHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCh
Q 047120          467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH---IEAARNLIEDM----PMEPN------DVIWRTLLSACRNYENL  533 (634)
Q Consensus       467 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~  533 (634)
                      +|...++.+.+..  +.+...+..+..++...|+   +++|...++++    ...|+      ..+|..+...|...|++
T Consensus       160 ~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          160 KADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            7777777776631  2234556666667766666   66666666555    11233      24677788888889999


Q ss_pred             hHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      ++|...++++++.+|.++.++..+..+....+
T Consensus       238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            99999999999999999888888777765443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=156.57  Aligned_cols=114  Identities=18%  Similarity=0.195  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120          415 DHWNAMINGLAIHGLGELAFDLLMEMER---LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM  491 (634)
Q Consensus       415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  491 (634)
                      .+||+||.+|++.|+.++|.++|.+|.+   .|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|+++
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHH
Confidence            4688888888888888888888877653   46788888888888888888888888888888877 6888888888888


Q ss_pred             HHHHhccCCH-HHHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 047120          492 VDILGRAGHI-EAARNLIEDM---PMEPNDVIWRTLLSACRN  529 (634)
Q Consensus       492 ~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~  529 (634)
                      |+++++.|+. ++|.++|++|   ++.||.++|++++.++.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            8888888874 6777888888   778888888877765444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.59  E-value=6.5e-13  Score=125.84  Aligned_cols=218  Identities=7%  Similarity=-0.098  Sum_probs=126.8

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH-
Q 047120          353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI-  426 (634)
Q Consensus       353 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-  426 (634)
                      .+...+...|++++|...++...+.   .+...+..+...|..    .+++++|...|++..+ .++..+..+...|.. 
T Consensus        11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g   87 (273)
T 1ouv_A           11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG   87 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            3333344444444444444444431   123334444444444    5555555555544432 244455555555655 


Q ss_pred             ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc--
Q 047120          427 ---HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR--  497 (634)
Q Consensus       427 ---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  497 (634)
                         .+++++|+..|++..+.+   +...+..+...|..    .+++++|...++++.+ .+   +...+..+...|..  
T Consensus        88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~  160 (273)
T 1ouv_A           88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGR  160 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTS
T ss_pred             CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCC
Confidence               666666666666666543   45566666666666    6667777777666665 22   34455556666665  


Q ss_pred             --cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCc
Q 047120          498 --AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMW  567 (634)
Q Consensus       498 --~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~  567 (634)
                        .+++++|++.+++.-...+...+..+...+..    .+++++|...++++++.+|  +..+..++.+|..    .+++
T Consensus       161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~  238 (273)
T 1ouv_A          161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE  238 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence              66777777777665112345566666666666    7777777777777777655  5667777777777    7777


Q ss_pred             hHHHHHHHHHHhCCC
Q 047120          568 NDARRVRSMMKERNL  582 (634)
Q Consensus       568 ~~A~~~~~~~~~~~~  582 (634)
                      ++|.+.+++..+.|.
T Consensus       239 ~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          239 KQAIENFKKGCKLGA  253 (273)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            777777777766554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=1.5e-12  Score=123.41  Aligned_cols=226  Identities=10%  Similarity=-0.033  Sum_probs=182.5

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHH
Q 047120          311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHG  386 (634)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  386 (634)
                      ++.++..+...+...|++++|+..|++..+.    -+...+..+...+..    .+++++|...++...+.+   ++..+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            4556777777788888888888888887752    234566667777777    888888888888888765   66777


Q ss_pred             HHHHHHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120          387 VALIDMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLN  457 (634)
Q Consensus       387 ~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  457 (634)
                      ..+..+|..    .+++++|+..|++..+ .+...+..+...|..    .+++++|+..|++..+.+   +...+..+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            788888888    8888888888887763 466788888888988    899999999999998865   5667777888


Q ss_pred             HHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 047120          458 ACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEAARNLIEDM-PMEPNDVIWRTLLSACR  528 (634)
Q Consensus       458 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~  528 (634)
                      .+..    .+++++|...++.+.+.    .+...+..+...|..    .+++++|++.+++. ... +...+..+...|.
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~  229 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            8877    89999999999998873    245677888899998    99999999999987 333 3777888888888


Q ss_pred             h----cCChhHHHHHHHHHhccCCCCC
Q 047120          529 N----YENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       529 ~----~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      .    .+++++|...++++++.+|+++
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            8    9999999999999999988644

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=3.7e-13  Score=125.82  Aligned_cols=195  Identities=10%  Similarity=-0.031  Sum_probs=127.2

Q ss_pred             hHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120          384 KHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA  460 (634)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  460 (634)
                      ..+..+...+...|++++|...|+++.   ..+...+..+...|...|++++|.+.++++.+.. ..+...+..+...+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence            444555555666666666666666554   2345566666666777777777777777666542 224556666666777


Q ss_pred             ccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      ..|++++|..+++.+.. .+..| +...+..++..|.+.|++++|.+.++++ ... .+...+..+...+...|++++|.
T Consensus       117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777655 22233 3455666677777777777777777665 222 34566677777777777777777


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..++++++..|.++..+..++.++...|++++|.++++++.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.55  E-value=4.7e-13  Score=136.27  Aligned_cols=345  Identities=10%  Similarity=-0.017  Sum_probs=150.5

Q ss_pred             HHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcH---HHHHHHHhhCCCCCchHHHHHHHHHHhcC---
Q 047120          191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL---QFAWQIFEKMPERDLISWNSMLHGCVKCG---  264 (634)
Q Consensus       191 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g---  264 (634)
                      +...+.+.|++++|++.|++..+. .+...+..+...+...|. .   ++|...|++..+.++..+..+...+...+   
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~-~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRD-PAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC-----------------------------CHHHHHHHHHTC--CC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence            456667778888888888776543 122222333333333333 4   66666666665555555555555444433   


Q ss_pred             --ChHHHHHHHhhCCCC-ChhHHHHHHHHHHHcCChHHH---HHHhhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 047120          265 --KMDDAQALFDKMPKR-DVVSWANMIDGYAKLGRVDIA---RRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDN  337 (634)
Q Consensus       265 --~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  337 (634)
                        ++++|...|++..++ +...+..|...|...+..+++   .+.+.... ..+...+..+...|...+.++++......
T Consensus        87 ~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~  166 (452)
T 3e4b_A           87 EAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER  166 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence              555666666655432 333455555555554433322   22222221 12344555555555555544433333222


Q ss_pred             HHhcCCCCCCHhHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc----CCHHHHHHHHHhcc
Q 047120          338 MQCELYLHPDDASLVIVLSAIAQLG---HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC----GSIENAIKVFEQIE  410 (634)
Q Consensus       338 m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~  410 (634)
                      +... -...+...+..+...+...|   +.++|...++...+.| +++...+..+..+|...    +++++|+..|++..
T Consensus       167 ~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          167 ICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             HHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred             HHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence            2111 11112224455555555555   5556666666555554 23333334444444333    45555655555554


Q ss_pred             CCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCcc
Q 047120          411 DGSVDHWNAMING-L--AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG-----LVKEGLLCFELMRRIHKLE  482 (634)
Q Consensus       411 ~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~  482 (634)
                      ..++..+..+... |  ...+++++|+..|++..+.|   +...+..+...|. .|     ++++|..+|+++.     .
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~  315 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----G  315 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----T
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----C
Confidence            2244445555544 2  23455555555555555543   3444444444444 33     5555555555543     1


Q ss_pred             cChhHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047120          483 PELQHYGCMVDILGR----AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       483 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p  548 (634)
                      -+...+..|...|..    ..++++|.+.|++.....+......|...|..    ..+.++|..+++++.+.++
T Consensus       316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence            233344444444443    22555555555554112223333334444332    2355555555555555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=1.2e-12  Score=122.24  Aligned_cols=206  Identities=14%  Similarity=0.050  Sum_probs=143.8

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120          312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID  391 (634)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  391 (634)
                      ...|..+...+...|++++|+..|+++...   .|                                  .+...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~----------------------------------~~~~~~~~la~   79 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DP----------------------------------SSADAHAALAV   79 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CT----------------------------------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC----------------------------------ChHHHHHHHHH
Confidence            344555556666666666666666665533   12                                  23334444445


Q ss_pred             HhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 047120          392 MYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKE  467 (634)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~  467 (634)
                      ++...|++++|.+.++++.   ..+...+..+...|...|++++|.++++++.+.+..|+ ...+..+...+...|++++
T Consensus        80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  159 (252)
T 2ho1_A           80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ  159 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence            5555555555555555443   23455667777777788888888888888776334554 4577778888888899999


Q ss_pred             HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      |...++.+.+..  +.+...+..++..|.+.|++++|.+.++++ ... .+...+..+...+...|++++|.+.++++++
T Consensus       160 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          160 AKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999998887732  334677888889999999999999999887 333 4566788888888999999999999999999


Q ss_pred             cCCCCCchHHH
Q 047120          546 MDSSNSSSYVL  556 (634)
Q Consensus       546 ~~p~~~~~~~~  556 (634)
                      ..|.++.....
T Consensus       238 ~~p~~~~~~~~  248 (252)
T 2ho1_A          238 LYPGSLEYQEF  248 (252)
T ss_dssp             HCTTSHHHHHH
T ss_pred             HCCCCHHHHHH
Confidence            99988765543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.54  E-value=2e-13  Score=138.99  Aligned_cols=343  Identities=12%  Similarity=-0.008  Sum_probs=233.6

Q ss_pred             HHHHHHhcCCcHHHHHHHHhhCCC-CCchHHHHHHHHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHHcC----
Q 047120          224 VLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHGCVKCGKM---DDAQALFDKMPKRDVVSWANMIDGYAKLG----  295 (634)
Q Consensus       224 ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g----  295 (634)
                      +...+.+.|+ +++|...|++..+ .+...+..+...|...|+.   ++|...|++..+.+...+..|...+...+    
T Consensus         9 la~~~~~~g~-~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~   87 (452)
T 3e4b_A            9 LANEALKRGD-TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE   87 (452)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred             HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence            4445566677 9999999988766 4566666677777778888   89999999988777777788887666655    


Q ss_pred             -ChHHHHHHhhhCCCC-ChhhHHHHHHHHHHcCCch---HHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 047120          296 -RVDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSM---KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI  370 (634)
Q Consensus       296 -~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  370 (634)
                       +.++|...|++..++ +...+..|...|...+..+   ++.+.+...... |   +......+...+...+.++++...
T Consensus        88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~~  163 (452)
T 3e4b_A           88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHLDD  163 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCHHH
Confidence             778999999887653 5567888888888876544   445555555433 2   244566666777777755555444


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhccC---CChhHHHHHHHHHHHc----CChHHHHHHHHHH
Q 047120          371 HRYLEKDQFSLNGKHGVALIDMYSKCG---SIENAIKVFEQIED---GSVDHWNAMINGLAIH----GLGELAFDLLMEM  440 (634)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~A~~~~~~m  440 (634)
                      .....+.-...++..+..+..+|...|   +.++|++.|++..+   ++...+..+...|...    +++++|+..|++.
T Consensus       164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a  243 (452)
T 3e4b_A          164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI  243 (452)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            333333223334458888999999999   89999999998763   2334446777777654    6899999999998


Q ss_pred             HHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-----CHHHHHHHHHhCC
Q 047120          441 ERLSIEPDDITFTGLLNA-C--AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG-----HIEAARNLIEDMP  512 (634)
Q Consensus       441 ~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~  512 (634)
                      . .|   +...+..+... +  ...+++++|..+|++..+ .|   +...+..|...|. .|     ++++|.+.|++..
T Consensus       244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            7 32   45566666665 4  568999999999999987 33   5667777888877 55     9999999999988


Q ss_pred             CCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCCc
Q 047120          513 MEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       513 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  583 (634)
                       ..+...+..|...|..    ..++++|..+++++.+.+  ++.....|+.+|..    ..+.++|..++++..+.|..
T Consensus       315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence             6678888888877766    349999999999998754  57789999999985    45899999999999988874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=1.4e-13  Score=127.77  Aligned_cols=174  Identities=10%  Similarity=0.039  Sum_probs=85.6

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH  461 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  461 (634)
                      .+..+...+...|++++|...++++.   ..+...+..+...+...|++++|...++++.+.. ..+...+..+...+..
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            33334444444444444444444332   1233444445555555555555555555555431 1234455555555555


Q ss_pred             cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 047120          462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPV  539 (634)
Q Consensus       462 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~  539 (634)
                      .|++++|...++.+.+..  +.+...+..++..+.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...
T Consensus       138 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  215 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM  215 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence            555555555555554421  223444555555555555555555555554 11 22344555555555556666666666


Q ss_pred             HHHHhccCCCCCchHHHHHHHH
Q 047120          540 AKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       540 ~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ++++++.+|.++..+..++.+.
T Consensus       216 ~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          216 LDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHccCcchHHHHHHHHHHH
Confidence            6666666665555555544433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=4.8e-13  Score=131.89  Aligned_cols=243  Identities=9%  Similarity=0.043  Sum_probs=195.8

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHH
Q 047120          312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGH-IDKGVAIHRYLEKDQFSLNGKHGVAL  389 (634)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l  389 (634)
                      ...|..+...+...|++++|+..++++...   .|+ ...|..+..++...|+ +++|+..++.+++.. +-+...|..+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~  172 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence            356777888888889999999999988844   564 5677788888888886 999999998888865 4467888888


Q ss_pred             HHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCC
Q 047120          390 IDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAH-AGL  464 (634)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~  464 (634)
                      ..++...|++++|+..|+++.   ..+...|..+..++...|++++|+..++++++.  .|+ ...|+.+..++.. .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence            888999999999999998876   346778999999999999999999999999985  554 6688888888888 566


Q ss_pred             HHHH-----HHHHHHhHHhcCccc-ChhHHHHHHHHHhccC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----
Q 047120          465 VKEG-----LLCFELMRRIHKLEP-ELQHYGCMVDILGRAG--HIEAARNLIEDMPMEPN-DVIWRTLLSACRNYE----  531 (634)
Q Consensus       465 ~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g----  531 (634)
                      .++|     +..++.+...   .| +...|..+..++.+.|  ++++|++.+.++...|+ ...+..++..|.+.|    
T Consensus       251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence            5676     4778887763   34 4667888888899888  68999998888744444 678888888887764    


Q ss_pred             -----ChhHHHHHHHHH-hccCCCCCchHHHHHHHHhc
Q 047120          532 -----NLNVGEPVAKHL-IGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       532 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~  563 (634)
                           .+++|+.+++++ ++.+|.....|..++..+..
T Consensus       328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence                 358999999999 99999999999988887764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=5.6e-13  Score=122.04  Aligned_cols=196  Identities=10%  Similarity=-0.009  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC  459 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  459 (634)
                      ...+..+...+...|++++|...|+++.   +.+...|..+...|...|++++|.+.++++.+.. ..+..++..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            3444555555556666666666655543   2344556666666666677777777766666542 22345666666667


Q ss_pred             hcc-CCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047120          460 AHA-GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       460 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  535 (634)
                      ... |++++|...++.+.+ .+..|+ ...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            777 777777777776665 222232 455666667777777777777777665 2223 35666667777777777777


Q ss_pred             HHHHHHHHhccCC-CCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          536 GEPVAKHLIGMDS-SNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       536 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      |...++++++..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            7777777777777 67777777777777777777777777776543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.54  E-value=6.9e-14  Score=141.38  Aligned_cols=264  Identities=13%  Similarity=0.003  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-----hHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCchh
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-----ASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QF-SLNGK  384 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~  384 (634)
                      +..+...+...|++++|+..|+++...   .|+.     ..+..+...+...|++++|...++++.+.    +. +....
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            334555666677777777777776644   2331     34556666666777777777776665542    11 12335


Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIEDG---------SVDHWNAMINGLAIHGL-----------------GELAFDLLM  438 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~A~~~~~  438 (634)
                      .+..+...|...|++++|...++++...         ...++..+...|...|+                 +++|++.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            5666777777778877777777765421         23367777888888888                 888888877


Q ss_pred             HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHH
Q 047120          439 EMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIE  509 (634)
Q Consensus       439 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~  509 (634)
                      +..+.    +..|. ..++..+...+...|++++|...++++.+...-.++    ...+..+...|...|++++|.+.++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            76542    11122 247778888899999999999999888763211112    2367888999999999999999988


Q ss_pred             hC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHHHHH
Q 047120          510 DM-PM---EPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARRVRS  575 (634)
Q Consensus       510 ~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~  575 (634)
                      ++ ..   ..+    ..++..+...+...|++++|...++++++..+..      ...+..++.+|...|++++|.++++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            76 11   111    4577888888999999999999999998875433      3488899999999999999999999


Q ss_pred             HHHhCC
Q 047120          576 MMKERN  581 (634)
Q Consensus       576 ~~~~~~  581 (634)
                      +..+..
T Consensus       368 ~al~~~  373 (411)
T 4a1s_A          368 QHLQLA  373 (411)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            986643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=1.8e-13  Score=127.20  Aligned_cols=199  Identities=13%  Similarity=0.042  Sum_probs=156.2

Q ss_pred             CchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120          381 LNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN  457 (634)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  457 (634)
                      .....+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|+..++++.+.. ..+...+..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            3455666777788888999999888888753   366788999999999999999999999998752 235678889999


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~  535 (634)
                      .+...|++++|...++.+.+..  +.+...+..++..+.+.|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998742  345678889999999999999999999987 33 3457788999999999999999


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      |+..++++++..|.++..+..++.+|...|++++|.+.++++.+...
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            99999999999999999999999999999999999999999977543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=139.29  Aligned_cols=269  Identities=13%  Similarity=0.034  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHhhhCCC--C-C----hhhHHHHHHHHHHcCCchHHHHHHHHHHhcC---CCCCC-HhH
Q 047120          282 VSWANMIDGYAKLGRVDIARRLFDEMPK--R-D----VVACNAMMGGYVRNGYSMKALEIFDNMQCEL---YLHPD-DAS  350 (634)
Q Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~~p~-~~~  350 (634)
                      ..+......+...|++++|...|++..+  | +    ..+|..+...+...|++++|+..+++.....   +-.|. ...
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3444555555666666666666555432  1 1    1345555555666666666666665543210   10111 224


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHhHhcCC--------------------HHHHHHH
Q 047120          351 LVIVLSAIAQLGHIDKGVAIHRYLEKD----QFSL-NGKHGVALIDMYSKCGS--------------------IENAIKV  405 (634)
Q Consensus       351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~--------------------~~~A~~~  405 (634)
                      +..+...+...|++++|...++.+.+.    +..+ ...++..+...|...|+                    +++|...
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            444455555555555555555554432    1000 12244444555555555                    5555544


Q ss_pred             HHhccC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHH
Q 047120          406 FEQIED-----G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       406 ~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      +++...     .    ...++..+...|...|++++|...+++..+... .++    ..++..+...+...|++++|...
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            443321     0    112344444455555555555555544432100 011    11444444444555555555555


Q ss_pred             HHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHH
Q 047120          472 FELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN----DVIWRTLLSACRNYENLNVGEPV  539 (634)
Q Consensus       472 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~  539 (634)
                      ++.+.....-.++    ..++..+...|...|++++|.+.++++    +..++    ..++..+...+...|++++|...
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5444331100000    223444444455555555555444443    00111    22344444444445555555555


Q ss_pred             HHHHhccCCCC
Q 047120          540 AKHLIGMDSSN  550 (634)
Q Consensus       540 ~~~~~~~~p~~  550 (634)
                      ++++++..+..
T Consensus       330 ~~~al~~~~~~  340 (406)
T 3sf4_A          330 AEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            55554444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=1.2e-12  Score=118.95  Aligned_cols=192  Identities=16%  Similarity=0.055  Sum_probs=97.1

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047120          311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL  389 (634)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  389 (634)
                      +...+..+...+.+.|++++|+..|++...   ..| +...+..+...+.+.|++++|+..++.+.+.. +.+...+..+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            344555666666666666666666666663   234 33455555556666666666666666665543 3344555555


Q ss_pred             HHHhHhc-----------CCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047120          390 IDMYSKC-----------GSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL  455 (634)
Q Consensus       390 ~~~~~~~-----------~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l  455 (634)
                      ..++...           |++++|+..|++..   +.+...|..+...+...|++++|+..|++..+..  .+...+..+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            5555555           55555555555543   1234455555555555555555555555555543  344555555


Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHh
Q 047120          456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED  510 (634)
Q Consensus       456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  510 (634)
                      ..++...|++++|+..++.+.+..  +.+...+..+..++.+.|++++|.+.+++
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            555555555555555555554421  12234455555555555555555555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.52  E-value=9.9e-13  Score=124.46  Aligned_cols=228  Identities=9%  Similarity=-0.027  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--CCh----hHHHHHHHH
Q 047120          350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSV----DHWNAMING  423 (634)
Q Consensus       350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~li~~  423 (634)
                      .+......+...|++++|+..++.+.+.. +.+...+..+..+|...|++++|+..++++.+  ++.    ..|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            44556677889999999999999999864 34566888899999999999999999998764  222    248899999


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120          424 LAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  502 (634)
                      +...|++++|+..|++..+.  .| +...+..+...+...|++++|...++++.+.  .+.+...+..+...+...++++
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999985  44 4578999999999999999999999998763  2334667777773444556999


Q ss_pred             HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccC---CCC-----CchHHHHHHHHhcCCCchH
Q 047120          503 AARNLIEDM-PMEPN-DVIWRTLLSACRNYEN---LNVGEPVAKHLIGMD---SSN-----SSSYVLLSNMFAGLGMWND  569 (634)
Q Consensus       503 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~  569 (634)
                      +|.+.++++ ...|+ ...+..+...+...|+   +++|...++++++..   |..     ...|..++.+|...|++++
T Consensus       160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999988 44454 6778888888888888   899999999999876   332     2578889999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 047120          570 ARRVRSMMKERNL  582 (634)
Q Consensus       570 A~~~~~~~~~~~~  582 (634)
                      |.+.++++.+...
T Consensus       240 A~~~~~~al~~~p  252 (272)
T 3u4t_A          240 ADAAWKNILALDP  252 (272)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999977654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.51  E-value=1.4e-13  Score=134.74  Aligned_cols=264  Identities=15%  Similarity=0.064  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-----HhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chh
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-----DASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QFSL-NGK  384 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  384 (634)
                      +......+...|++++|+..|+++...   .|+     ...+..+...+...|++++|...++.+.+.    +..+ ...
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            334455666677777777777777644   232     245556666667777777777777665432    2111 245


Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHH
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGL--------------------GELAFD  435 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~  435 (634)
                      ++..+...+...|++++|...+++..+     .+    ..++..+...|...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            566677777788888888877776542     12    2367777788888888                    888888


Q ss_pred             HHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHH
Q 047120          436 LLMEMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARN  506 (634)
Q Consensus       436 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~  506 (634)
                      .+++....    +..|. ..++..+...+...|++++|...++.+.+...-.++    ...+..++..+...|++++|.+
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            88776432    11121 346777888889999999999999887753211112    3367888899999999999999


Q ss_pred             HHHhC-C---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHH
Q 047120          507 LIEDM-P---MEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARR  572 (634)
Q Consensus       507 ~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~  572 (634)
                      .+++. .   ..++    ..++..+...+...|++++|...++++++..+..      ...+..++.+|.+.|++++|.+
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            98876 1   1122    4577788888999999999999999998876433      3378889999999999999999


Q ss_pred             HHHHHHhCC
Q 047120          573 VRSMMKERN  581 (634)
Q Consensus       573 ~~~~~~~~~  581 (634)
                      +++++.+..
T Consensus       325 ~~~~a~~~~  333 (338)
T 3ro2_A          325 FAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999987653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=2.8e-12  Score=117.31  Aligned_cols=205  Identities=10%  Similarity=-0.088  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHH
Q 047120          350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAI  426 (634)
Q Consensus       350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~  426 (634)
                      .+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.   ..+...+..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            34444444445555555555555444432 2234455555666666666666666666554   2355567777788888


Q ss_pred             c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120          427 H-GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA  504 (634)
Q Consensus       427 ~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  504 (634)
                      . |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+..  +.+...+..++..+.+.|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHH
Confidence            8 888888888888877333454 4577788888888999999999988887631  23466788888889999999999


Q ss_pred             HHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120          505 RNLIEDM-PME--PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL  557 (634)
Q Consensus       505 ~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  557 (634)
                      .+.++++ ...  .+...+..+...+...|+.+.+..+++.+.+..|.++.....+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9998887 323  4566777777778889999999999999988899888766544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=1.1e-12  Score=115.99  Aligned_cols=166  Identities=10%  Similarity=0.076  Sum_probs=138.3

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM  491 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  491 (634)
                      +...|..+...|...|++++|++.|++..+.  .|+ ..++..+..++.+.|++++|...+..+....  +.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence            4567888888888888899999888888875  554 5688888888999999999999988887632  3345667778


Q ss_pred             HHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchH
Q 047120          492 VDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND  569 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  569 (634)
                      ...+...++++.|.+.+++. ... .+...+..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88888999999999988887 333 4477888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 047120          570 ARRVRSMMKERNL  582 (634)
Q Consensus       570 A~~~~~~~~~~~~  582 (634)
                      |++.+++..+...
T Consensus       160 A~~~~~~al~~~p  172 (184)
T 3vtx_A          160 AVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhCCc
Confidence            9999999877643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=1.1e-12  Score=129.37  Aligned_cols=228  Identities=8%  Similarity=0.049  Sum_probs=194.1

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC-HHHHHHHHHhcc---CCChhHHHHHHHHH
Q 047120          349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS-IENAIKVFEQIE---DGSVDHWNAMINGL  424 (634)
Q Consensus       349 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~li~~~  424 (634)
                      ..|..+...+...|++++|+..++.+++.. +.+...|..+..++...|+ +++|+..|+++.   ..+...|+.+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            467777888889999999999999999875 4567889999999999997 999999999887   34777999999999


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc-cCCHH
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR-AGHIE  502 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  502 (634)
                      ...|++++|+..|+++++.  .|+ ...|..+..++...|++++|+..++++.+..  +.+...|+.+..+|.+ .|..+
T Consensus       177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999985  564 6699999999999999999999999998841  3357789999999999 66657


Q ss_pred             HH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC--------
Q 047120          503 AA-----RNLIEDM-PMEPN-DVIWRTLLSACRNYE--NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG--------  565 (634)
Q Consensus       503 ~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------  565 (634)
                      +|     ++.++++ .+.|+ ...|..+...+...|  ++++|...++++ +.+|+++..+..++.+|.+.|        
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            77     4777776 44554 678999999998888  699999999998 888999999999999999875        


Q ss_pred             -CchHHHHHHHHH-HhCCC
Q 047120          566 -MWNDARRVRSMM-KERNL  582 (634)
Q Consensus       566 -~~~~A~~~~~~~-~~~~~  582 (634)
                       .+++|+++++++ .+.+.
T Consensus       332 ~~~~~A~~~~~~l~~~~DP  350 (382)
T 2h6f_A          332 DILNKALELCEILAKEKDT  350 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhCc
Confidence             358999999998 55543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.48  E-value=9.7e-13  Score=124.69  Aligned_cols=218  Identities=12%  Similarity=0.009  Sum_probs=180.1

Q ss_pred             HccCChHHHHHHHHHHHHcCC---CCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHH
Q 047120          359 AQLGHIDKGVAIHRYLEKDQF---SLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGEL  432 (634)
Q Consensus       359 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~  432 (634)
                      ...|++++|+..++.+.+...   +.+..++..+...+...|++++|...|+++.   +.+...|..+...|...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            345789999999999988642   1246788889999999999999999999876   3467899999999999999999


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120          433 AFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       433 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      |...|+++.+.  .| +...+..+...+...|++++|...++.+.+.   .|+..........+...|++++|...+++.
T Consensus        96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999985  44 4678999999999999999999999999874   455444445555667789999999999776


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          512 --PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       512 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                        ..+++...+. ++..+...++.++|...++++++..|.    ++..+..++.+|.+.|++++|...++++.+...
T Consensus       171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence              2334444443 667778888999999999999988764    367899999999999999999999999987653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=4.2e-13  Score=137.60  Aligned_cols=208  Identities=7%  Similarity=-0.038  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH-HHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI-ENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                      +.+...++...+. .+.+...+..+...+...|++ ++|++.|++..   ..+...|..+...|...|++++|...|++.
T Consensus        85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444443332 234556666777777777777 77777777664   335678888899999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc--------CCHHH
Q 047120          441 ERLSIEPDDITFTGLLNACAHA---------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA--------GHIEA  503 (634)
Q Consensus       441 ~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~  503 (634)
                      .+.  .|+...+..+...+...         |++++|+..++++.+..  +.+...|..+..+|...        |++++
T Consensus       164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            875  67778888999999999         99999999999998742  33477788999999988        99999


Q ss_pred             HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          504 ARNLIEDM-PMEP----NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       504 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      |++.|+++ ...|    +...|..+..+|...|++++|...++++++++|.++..+..++.++...|++++|++.+.++
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999988 4456    68899999999999999999999999999999999999999999999999999999765443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.46  E-value=5.4e-13  Score=134.39  Aligned_cols=260  Identities=14%  Similarity=0.062  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-----HhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chh
Q 047120          315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-----DASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QFSL-NGK  384 (634)
Q Consensus       315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  384 (634)
                      +......+...|++++|+..|+++...   .|+     ...+..+...+...|++++|...++.+.+.    +..+ ...
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            334444455555555555555555433   121     123444444455555555555554443321    1111 123


Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHH
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGL--------------------GELAFD  435 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~  435 (634)
                      ++..+...|...|++++|...+++..+     .+    ..++..+...|...|+                    +++|..
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            344444555555555555555444331     11    1244444445555555                    555555


Q ss_pred             HHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHH
Q 047120          436 LLMEMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARN  506 (634)
Q Consensus       436 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~  506 (634)
                      .+++..+.    +..|. ..++..+...+...|++++|...++++.+...-.++    ...+..+...|...|++++|..
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            44443221    10111 124444444555555555555555544431111111    1234445555555555555555


Q ss_pred             HHHhC-C---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHH
Q 047120          507 LIEDM-P---MEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARR  572 (634)
Q Consensus       507 ~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~  572 (634)
                      .+++. .   ..++    ..++..+...+...|++++|...++++++..+..      +..+..++.+|...|++++|.+
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            54443 0   0011    2234444444555555555555555554443221      2244445555555555555555


Q ss_pred             HHHHH
Q 047120          573 VRSMM  577 (634)
Q Consensus       573 ~~~~~  577 (634)
                      .+++.
T Consensus       329 ~~~~a  333 (406)
T 3sf4_A          329 FAEKH  333 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.45  E-value=4.9e-10  Score=117.91  Aligned_cols=219  Identities=9%  Similarity=-0.019  Sum_probs=165.0

Q ss_pred             hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHH
Q 047120          329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV-AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE  407 (634)
Q Consensus       329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  407 (634)
                      +.+..+|++....  +.-+...|.....-+...|+.+.|. .+++.+... .+.+...+...+....+.|+++.|.++|+
T Consensus       326 ~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye  402 (679)
T 4e6h_A          326 ARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3456778888765  2335566777777777888888896 999998864 35567778888889999999999999998


Q ss_pred             hccC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047120          408 QIED-------------GS------------VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA  462 (634)
Q Consensus       408 ~~~~-------------~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  462 (634)
                      ++..             |+            ...|...+....+.|+.+.|..+|.+..+....+....|...+..-.+.
T Consensus       403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence            8753             21            2368888888888899999999999998751112334444333333333


Q ss_pred             -CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHH
Q 047120          463 -GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP----NDVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       463 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a  536 (634)
                       ++.+.|..+|+...+.  ++.+...+...++.....|+.+.|..+|+++ ...|    ....|...+..-.+.|+.+.+
T Consensus       483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence             4589999999999885  3345666778888888999999999999987 3334    245788888888899999999


Q ss_pred             HHHHHHHhccCCCCCc
Q 047120          537 EPVAKHLIGMDSSNSS  552 (634)
Q Consensus       537 ~~~~~~~~~~~p~~~~  552 (634)
                      ..+.+++.+..|+++.
T Consensus       561 ~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          561 RTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHHhCCCCcH
Confidence            9999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.41  E-value=3.7e-12  Score=127.27  Aligned_cols=223  Identities=8%  Similarity=-0.034  Sum_probs=129.9

Q ss_pred             HHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhccC-----C-----ChhHHHHH
Q 047120          356 SAIAQLGHIDKGVAIHRYLEKD----QFSL-NGKHGVALIDMYSKCGSIENAIKVFEQIED-----G-----SVDHWNAM  420 (634)
Q Consensus       356 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l  420 (634)
                      ..+...|++++|...++.+.+.    +.++ ...++..+..+|...|+++.|...+++..+     +     ...+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3344555555555555555442    1111 224455555666666666666665555431     1     12356666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cc-ccChhHHHHH
Q 047120          421 INGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIH---KL-EPELQHYGCM  491 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l  491 (634)
                      ...|...|++++|+..+++..+... .++    ..++..+...|...|++++|...++++.+..   +. +....++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            6777777777777777766553210 011    1366667777777777777777777765511   22 2224456777


Q ss_pred             HHHHhccCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          492 VDILGRAGHIEAARNLIEDM-PM-----EPN-DVIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ...|.+.|++++|.+.+++. .+     .|. ...+..+...+...|+   +++|..++++. ...|.....+..++.+|
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y  349 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY  349 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence            77777777777777777665 11     121 2234556666677777   66666666665 22234445677778888


Q ss_pred             hcCCCchHHHHHHHHHHh
Q 047120          562 AGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       562 ~~~g~~~~A~~~~~~~~~  579 (634)
                      ...|++++|.+++++..+
T Consensus       350 ~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          350 HERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            888888888888877754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=6.7e-13  Score=128.30  Aligned_cols=236  Identities=11%  Similarity=0.065  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCC-----CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELY-----LHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKD------QF-  379 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-  379 (634)
                      .++..+...+...|++++|+.+++++.....     -.| ....+..+...+...|++++|...++.+.+.      +. 
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4566667777777777777777777664200     011 2234555555566666666666666555432      11 


Q ss_pred             CCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 047120          380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL------SIEPD-DITF  452 (634)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~  452 (634)
                      +....                               .+..+...|...|++++|...++++.+.      +-.|+ ...+
T Consensus       108 ~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  156 (311)
T 3nf1_A          108 PAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL  156 (311)
T ss_dssp             HHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            11223                               3444444555555555555555554432      11122 2345


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHHhc-----Cccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-C---------CCCC
Q 047120          453 TGLLNACAHAGLVKEGLLCFELMRRIH-----KLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-P---------MEPN  516 (634)
Q Consensus       453 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~  516 (634)
                      ..+...+...|++++|..+++.+.+..     +..| ....+..+...|.+.|++++|.+.++++ .         ..+.
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            556666666666666666666655420     1111 2334566666666666666666666554 1         0111


Q ss_pred             -------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          517 -------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       517 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                             ...+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+++++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   112223333345567777788888888877788888888899999999999999998888754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.40  E-value=2.5e-12  Score=129.85  Aligned_cols=262  Identities=12%  Similarity=0.036  Sum_probs=168.2

Q ss_pred             HHHHHHHcCChHHHHHHhhhCCC--C-Ch----hhHHHHHHHHHHcCCchHHHHHHHHHHhcC---CCCC-CHhHHHHHH
Q 047120          287 MIDGYAKLGRVDIARRLFDEMPK--R-DV----VACNAMMGGYVRNGYSMKALEIFDNMQCEL---YLHP-DDASLVIVL  355 (634)
Q Consensus       287 l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~~p-~~~~~~~ll  355 (634)
                      +...+...|++++|...|++..+  + +.    .+|..+...+...|++++|+..+++.....   +-.| ....+..+.
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            34444555555555555544432  1 11    245555556666666666666665554320   0011 223455555


Q ss_pred             HHHHccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHhHhcCC-----------------HHHHHHHHHhccC--
Q 047120          356 SAIAQLGHIDKGVAIHRYLEKD----QF-SLNGKHGVALIDMYSKCGS-----------------IENAIKVFEQIED--  411 (634)
Q Consensus       356 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~--  411 (634)
                      ..+...|++++|...++.+.+.    +. +.....+..+...|...|+                 +++|+..+++..+  
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            6666666666666666655442    11 1123456666777777777                 7777777665431  


Q ss_pred             ---C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 047120          412 ---G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIH  479 (634)
Q Consensus       412 ---~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  479 (634)
                         .    ....+..+...|...|++++|...+++..+... .++    ..++..+...+...|++++|...++.+....
T Consensus       214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence               1    223677788888889999999988888765311 012    2377888889999999999999998877632


Q ss_pred             Cccc----ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          480 KLEP----ELQHYGCMVDILGRAGHIEAARNLIEDM-PM---EPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       480 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      .-..    ....+..+...|...|++++|.+.++++ ..   .++    ..++..+...+...|++++|...+++++++.
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            1111    1456888899999999999999999876 11   112    3477788888999999999999999998776


Q ss_pred             C
Q 047120          548 S  548 (634)
Q Consensus       548 p  548 (634)
                      +
T Consensus       374 ~  374 (411)
T 4a1s_A          374 X  374 (411)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.39  E-value=1.2e-11  Score=109.32  Aligned_cols=166  Identities=11%  Similarity=0.061  Sum_probs=137.0

Q ss_pred             chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047120          382 NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLN  457 (634)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~  457 (634)
                      ++.+|..+...|...|++++|++.|++..   +.++.+|..+..+|...|++++|+..+.+....  .| +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence            45677778888888888888888888765   346678888889999999999999999988875  34 4567777888


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  535 (634)
                      .+...++++.+...+..+....  +.+...+..+...|.+.|++++|++.|+++ ...| +..+|..+..++.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            8889999999999999987732  345677888999999999999999999987 4344 47789999999999999999


Q ss_pred             HHHHHHHHhccCCCCC
Q 047120          536 GEPVAKHLIGMDSSNS  551 (634)
Q Consensus       536 a~~~~~~~~~~~p~~~  551 (634)
                      |+..++++++.+|.++
T Consensus       160 A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhCCccCH
Confidence            9999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.39  E-value=1.6e-11  Score=122.66  Aligned_cols=230  Identities=8%  Similarity=-0.029  Sum_probs=178.5

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcC--CC----CchhHHH
Q 047120          318 MMGGYVRNGYSMKALEIFDNMQCELYLHPD----DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ--FS----LNGKHGV  387 (634)
Q Consensus       318 l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~  387 (634)
                      ....+...|++++|+..|++......-.++    ..++..+...+...|+++.|...+.++.+..  ..    ....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            566778889999999999998753222233    2467788888899999999999998887531  11    1235777


Q ss_pred             HHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERL----SIEPD-DITFT  453 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~  453 (634)
                      .+..+|...|++++|...|++..+     ++    ..++..+...|...|++++|+..+++..+.    +..|+ ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            888999999999999999987752     12    237888999999999999999999998762    22244 55889


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcC---cccChhHHHHHHHHHhccCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 047120          454 GLLNACAHAGLVKEGLLCFELMRRIHK---LEPELQHYGCMVDILGRAGH---IEAARNLIEDMPMEPN-DVIWRTLLSA  526 (634)
Q Consensus       454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~  526 (634)
                      .+...+...|++++|...++++.+...   .+.....+..+...|...|+   +++|+.++++.+..|+ ...+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999998876321   11123336778889999999   8999999999865554 3467788889


Q ss_pred             HHhcCChhHHHHHHHHHhccC
Q 047120          527 CRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      |...|++++|...++++++..
T Consensus       349 y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.38  E-value=6e-12  Score=134.09  Aligned_cols=162  Identities=17%  Similarity=0.208  Sum_probs=126.1

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGC  490 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~  490 (634)
                      +..+|+.|...|.+.|++++|++.|++..+.  .|+ ...|..+..++.+.|++++|+..|+++.+.   .|+ ...|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n   82 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence            3456777777777888888888888877764  555 557777888888888888888888887763   343 667788


Q ss_pred             HHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120          491 MVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN  568 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  568 (634)
                      +..+|.+.|++++|++.|+++ .+.|+ ...|..+..++...|++++|+..|+++++++|.++..+..++.+|...|+++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            888888888888888888876 44454 6678888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHh
Q 047120          569 DARRVRSMMKE  579 (634)
Q Consensus       569 ~A~~~~~~~~~  579 (634)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.38  E-value=8.2e-12  Score=121.95  Aligned_cols=134  Identities=11%  Similarity=-0.015  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hh
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQ  486 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~  486 (634)
                      .+..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|...++.+.....-.++    ..
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            566677777777888888877777654210 011    236777778888888888888888877652211111    45


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          487 HYGCMVDILGRAGHIEAARNLIEDM-PM---EPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       487 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      ++..+...|...|++++|.+.++++ ..   .++    ..++..+...+...|++++|...++++++..+.
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            6778888889999999998888876 11   111    346777888899999999999999999887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=2.8e-10  Score=109.56  Aligned_cols=220  Identities=11%  Similarity=0.018  Sum_probs=146.2

Q ss_pred             hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047120          329 MKALEIFDNMQCELYLHPDDASLVIVLSAIA-------QLGHI-------DKGVAIHRYLEKDQFSLNGKHGVALIDMYS  394 (634)
Q Consensus       329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  394 (634)
                      ++|+.+|++.....  +-+...|..++..+.       ..|++       ++|..+++++++.-.+.+...+..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56677777776431  223345555554443       34665       777777777776322345567777777777


Q ss_pred             hcCCHHHHHHHHHhccC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 047120          395 KCGSIENAIKVFEQIED--G-SVD-HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-HAGLVKEGL  469 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~  469 (634)
                      +.|++++|..+|+++.+  | +.. .|..++..+.+.|++++|..+|++..+.. .++...|........ ..|++++|.
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            77888888887777653  2 333 67777777888888888888888887642 223334443333322 368888888


Q ss_pred             HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120          470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P---MEPN--DVIWRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                      .+|+.+.+..  +.+...|..++..+.+.|++++|..+|+++ .   .+|+  ...|..++....+.|+.+.|..+++++
T Consensus       190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888877632  234667777888888888888888888876 2   3443  557777777777788888888888888


Q ss_pred             hccCCCCCch
Q 047120          544 IGMDSSNSSS  553 (634)
Q Consensus       544 ~~~~p~~~~~  553 (634)
                      ++..|.++..
T Consensus       268 ~~~~p~~~~~  277 (308)
T 2ond_A          268 FTAFREEYEG  277 (308)
T ss_dssp             HHHTTTTTSS
T ss_pred             HHHccccccc
Confidence            8888876543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.34  E-value=5.9e-10  Score=110.71  Aligned_cols=261  Identities=13%  Similarity=-0.009  Sum_probs=152.9

Q ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----hhHHHHH
Q 047120          319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDA----SLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-SLN----GKHGVAL  389 (634)
Q Consensus       319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l  389 (634)
                      ...+...|++++|...+++...... ..+..    .+..+...+...|+++.|...+++..+..- ..+    ...+..+
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3445556666666666666654311 11111    334444555666777777666666554210 011    1234455


Q ss_pred             HHHhHhcCCHHHHHHHHHhccC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 047120          390 IDMYSKCGSIENAIKVFEQIED----------G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE--P--DDITFTG  454 (634)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~  454 (634)
                      ...+...|++++|...+++...          + ....+..+...+...|++++|...+++.......  +  ...++..
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  179 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  179 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence            6666777777777777665531          1 1224555667777778888888777776653211  1  1245666


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHH-----HHHHHHhccCCHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-----CMVDILGRAGHIEAARNLIEDM-PMEPN-----DVIWRTL  523 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l  523 (634)
                      +...+...|++++|...++.......-......+.     ..+..+...|++++|...+++. ...|.     ...+..+
T Consensus       180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l  259 (373)
T 1hz4_A          180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  259 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence            77777778888888888877765211111111111     2334466788888888888776 22221     2345566


Q ss_pred             HHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          524 LSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ...+...|++++|...++++++..+..      ...+..++.++...|+.++|...+++....
T Consensus       260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            677777888888888888777654321      125666777788888888888888777543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=3.5e-11  Score=106.09  Aligned_cols=161  Identities=14%  Similarity=-0.012  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG  496 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  496 (634)
                      |..+...+...|++++|...++++.+.. ..+...+..+...+...|++++|...++.+.+.  .+.+...+..++..+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence            4444455555555555555555554431 123445555666666666666666666666552  1223455666666666


Q ss_pred             ccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120          497 RAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR  574 (634)
Q Consensus       497 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  574 (634)
                      ..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777766665 2 23446677777777788888888888888888888888888888888888888888888888


Q ss_pred             HHHHhC
Q 047120          575 SMMKER  580 (634)
Q Consensus       575 ~~~~~~  580 (634)
                      +++.+.
T Consensus       168 ~~~~~~  173 (186)
T 3as5_A          168 KKANEL  173 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            877654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.32  E-value=5.1e-09  Score=110.23  Aligned_cols=215  Identities=9%  Similarity=-0.031  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH-HHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI-KVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                      +.+..+|++++.. ++....+|...+..+...|+.++|. .+|++..   ..+...|-..+....+.|++++|.++|+++
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455678777765 3567888989999999999999996 9998876   345667888888999999999999999998


Q ss_pred             HHCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc-
Q 047120          441 ERLS---------IEPD------------DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA-  498 (634)
Q Consensus       441 ~~~g---------~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  498 (634)
                      ....         -.|+            ...|...+....+.|..+.|..+|..+.+..+ ......|...+..-.+. 
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence            8641         0142            23677778888888999999999999987311 12234454444444444 


Q ss_pred             CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCchHHHHHHHHhcCCCchHHHHH
Q 047120          499 GHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS---NSSSYVLLSNMFAGLGMWNDARRV  573 (634)
Q Consensus       499 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~  573 (634)
                      ++.+.|.++|+..  ..+.+...|...+......|+.+.|..+|+++++..|+   ....|..++..-.+.|+.+.+.++
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v  563 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL  563 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4589999999987  33345667778888888899999999999999998874   445788888888899999999999


Q ss_pred             HHHHHhCC
Q 047120          574 RSMMKERN  581 (634)
Q Consensus       574 ~~~~~~~~  581 (634)
                      .+++.+.-
T Consensus       564 ~~R~~~~~  571 (679)
T 4e6h_A          564 EKRFFEKF  571 (679)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            99997653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.32  E-value=1e-10  Score=107.26  Aligned_cols=205  Identities=7%  Similarity=-0.023  Sum_probs=146.2

Q ss_pred             CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHH
Q 047120          346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMIN  422 (634)
Q Consensus       346 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~  422 (634)
                      .|...+......+...|++++|...++.+.+...+++...+..+..++...|++++|+..|++..+   .+...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            455677777888888889999998888888876436666777788888888888888888887752   34557888888


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC---hhHHHHH
Q 047120          423 GLAIHGLGELAFDLLMEMERLSIEPD-D-------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE---LQHYGCM  491 (634)
Q Consensus       423 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l  491 (634)
                      .|...|++++|+..+++..+.  .|+ .       ..|..+...+...|++++|+..++.+.+.   .|+   ...+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l  159 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence            888888888888888888774  444 3       34667777778888888888888888762   343   4567777


Q ss_pred             HHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          492 VDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ..+|...|+.     .++++ . ...+...|....  ....+.+++|...++++++++|.++.....+..+..
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            7777665543     22222 1 122333443333  234566899999999999999999888877776653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=1.6e-10  Score=111.36  Aligned_cols=213  Identities=8%  Similarity=-0.032  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHhH-------hcCCH-------HHHHHHHHhccC---C-ChhHHHHHHHHHHH
Q 047120          365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYS-------KCGSI-------ENAIKVFEQIED---G-SVDHWNAMINGLAI  426 (634)
Q Consensus       365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~  426 (634)
                      +.|...|+++++.. +.++..|..++..+.       +.|++       ++|..+|++...   | +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            67778888888753 557778888887775       35875       899999998764   2 55689999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh-ccCCHHH
Q 047120          427 HGLGELAFDLLMEMERLSIEPD-DI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG-RAGHIEA  503 (634)
Q Consensus       427 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~  503 (634)
                      .|++++|..+|++..+.  .|+ .. .|..++..+.+.|++++|..+|+++.+..  +++...|...+.... ..|++++
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999974  565 33 79999999999999999999999998731  334455554444322 3799999


Q ss_pred             HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CC-CCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          504 ARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD---SS-NSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       504 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      |.++|+++ ... .+...|..++..+.+.|++++|..+|+++++..   |. ....|..++..+.+.|+.++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999987 323 357789999999999999999999999999963   32 5668999999999999999999999999


Q ss_pred             HhCCC
Q 047120          578 KERNL  582 (634)
Q Consensus       578 ~~~~~  582 (634)
                      .+...
T Consensus       268 ~~~~p  272 (308)
T 2ond_A          268 FTAFR  272 (308)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            77644

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.31  E-value=1.1e-10  Score=116.32  Aligned_cols=222  Identities=10%  Similarity=0.024  Sum_probs=137.8

Q ss_pred             HHHccCChHHHHHHHHHHHHcC--CC---CchhHHHHHHHHhHhcCCHHHHHHHHHhccC-----CC-----hhHHHHHH
Q 047120          357 AIAQLGHIDKGVAIHRYLEKDQ--FS---LNGKHGVALIDMYSKCGSIENAIKVFEQIED-----GS-----VDHWNAMI  421 (634)
Q Consensus       357 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~li  421 (634)
                      .+...|++++|...++.+.+..  ..   ....++..+..+|...|+++.|...+++..+     ++     ..+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            3445566666666666655421  01   1234555566666666776666666655431     11     23566777


Q ss_pred             HHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CcccChhHHHHHHH
Q 047120          422 NGLAIHGLGELAFDLLMEMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEPELQHYGCMVD  493 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~  493 (634)
                      ..|...|++++|.+.+++..+.    +-.+. ..++..+..++...|++++|...++++....   +.+....++..+..
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            7777777777777777776542    11111 2366777777888888888888887776511   22223556777788


Q ss_pred             HHhccCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          494 ILGRAGHIEAARNLIEDM----PM--EPN-DVIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       494 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      .|.+.|++++|...+++.    ..  .|. ...+..+...+...|+   +.+|...+++. ...|.....+..++.+|..
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~  348 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES  348 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence            888888888888888765    11  222 3345555555667777   77777776662 2223444567778888888


Q ss_pred             CCCchHHHHHHHHHHh
Q 047120          564 LGMWNDARRVRSMMKE  579 (634)
Q Consensus       564 ~g~~~~A~~~~~~~~~  579 (634)
                      .|++++|.+++++..+
T Consensus       349 ~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          349 SCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            8888888888887754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.30  E-value=6.8e-10  Score=110.44  Aligned_cols=229  Identities=9%  Similarity=0.007  Sum_probs=176.3

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcC--C---CC-chhH
Q 047120          316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPD----DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ--F---SL-NGKH  385 (634)
Q Consensus       316 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~  385 (634)
                      ......+...|++++|+..|++......-.++    ...+..+...+...|+++.|...+..+.+..  .   .+ ...+
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  184 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS  184 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence            34455677889999999999988754222233    2467778888899999999999998877531  1   11 2456


Q ss_pred             HHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCC-HH
Q 047120          386 GVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMER-----LSIEPD-DI  450 (634)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~-~~  450 (634)
                      +..+..+|...|++++|.+.|++..+     ++    ..++..+...|...|++++|+..+++..+     .  .|. ..
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~  262 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHH
Confidence            77888999999999999999987652     12    24688899999999999999999999876     4  233 56


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC---hhHHHHHHHHHhccCC---HHHHHHHHHhCCCCCCH-HHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE---LQHYGCMVDILGRAGH---IEAARNLIEDMPMEPND-VIWRTL  523 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l  523 (634)
                      ++..+...+.+.|++++|...++++.+...-..+   ...+..+...|...|+   +++|+..+++.+..|+. ..+..+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l  342 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            8888999999999999999999998874322122   3346777778888898   99999999997544443 466778


Q ss_pred             HHHHHhcCChhHHHHHHHHHhcc
Q 047120          524 LSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      ...|...|++++|...++++++.
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            88899999999999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=1.2e-11  Score=119.50  Aligned_cols=239  Identities=12%  Similarity=0.063  Sum_probs=147.6

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHhhhCCC--------C---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC-----C
Q 047120          280 DVVSWANMIDGYAKLGRVDIARRLFDEMPK--------R---DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL-----Y  343 (634)
Q Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~  343 (634)
                      +..++..+...|...|++++|...|+++.+        .   ...++..+...+...|++++|+..+++.....     +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            356788899999999999999999988764        2   23568888999999999999999999997541     1


Q ss_pred             CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhccCCChh
Q 047120          344 LHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKD------QFSL-NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD  415 (634)
Q Consensus       344 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  415 (634)
                      -.| ....+..+...+...|++++|...++.+.+.      +..+ ....+..+...+.                     
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---------------------  164 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ---------------------  164 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---------------------
Confidence            122 3457788888889999999999999887753      1111 2233444444444                     


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------Ccc
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERL------SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH------KLE  482 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~  482 (634)
                                ..|++++|+.+++++.+.      +..|. ..++..+...+...|++++|...++.+....      ...
T Consensus       165 ----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  234 (311)
T 3nf1_A          165 ----------NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD  234 (311)
T ss_dssp             ----------TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             ----------HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                      445555555554444332      11222 2355566666666677777766666665410      011


Q ss_pred             cC-------hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          483 PE-------LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       483 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +.       ...+..+...+...+.+.+|...++.. ...|+ ..++..+...|...|++++|...+++++++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            11       112222333344455555566666665 23333 557888999999999999999999999987664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.28  E-value=7e-11  Score=108.34  Aligned_cols=191  Identities=11%  Similarity=-0.072  Sum_probs=123.1

Q ss_pred             CchhHHHHHHHHhHhcCCHHHHHHHHHhcc---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047120          381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE---D-GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGL  455 (634)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l  455 (634)
                      .++..+......+...|++++|+..|++..   + ++...+..+..++...|++++|+..+++..+.  .|+ ...+..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence            345666677777777777777777777664   2 45566666777777777777777777777764  454 3466777


Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCcccCh-------hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 047120          456 LNACAHAGLVKEGLLCFELMRRIHKLEPEL-------QHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLL  524 (634)
Q Consensus       456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~  524 (634)
                      ..++...|++++|...++.+.+...  .+.       ..|..+...+...|++++|++.++++ ...|+   ...|..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence            7777777777777777777766321  122       34666666777777777777777765 45555   34555555


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..+..     .+...++++..+.+.++..|...  .....+.+++|...+++..+...
T Consensus       161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p  211 (228)
T 4i17_A          161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP  211 (228)
T ss_dssp             HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence            55543     33445566666665554444332  23344567999999999876543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=2.6e-10  Score=100.35  Aligned_cols=168  Identities=13%  Similarity=-0.038  Sum_probs=141.6

Q ss_pred             hHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120          384 KHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA  460 (634)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  460 (634)
                      ..+..+...+...|++++|...++++.+   .+...+..+...+...|++++|...++++.+.. ..+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            4566778888899999999999998873   366788899999999999999999999998752 335678888999999


Q ss_pred             ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEP  538 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~  538 (634)
                      ..|++++|...++.+.+.  .+.+...+..++..+...|++++|.+.++++ . .+.+...+..+...+...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999998874  2345677888999999999999999999987 2 23457788999999999999999999


Q ss_pred             HHHHHhccCCCCCchH
Q 047120          539 VAKHLIGMDSSNSSSY  554 (634)
Q Consensus       539 ~~~~~~~~~p~~~~~~  554 (634)
                      .++++++..|.++...
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          166 HFKKANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHHHHCCCGGG
T ss_pred             HHHHHHHcCCCchhhH
Confidence            9999999988776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.25  E-value=6.7e-11  Score=121.16  Aligned_cols=179  Identities=14%  Similarity=0.058  Sum_probs=157.2

Q ss_pred             CHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120          398 SIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLG-ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       398 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      ++++++..++...   ..+...|..+...|...|++ ++|++.|++..+.  .|+ ...|..+..+|...|++++|...|
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3566666666554   34677899999999999999 9999999999885  555 679999999999999999999999


Q ss_pred             HHhHHhcCcccChhHHHHHHHHHhcc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCh
Q 047120          473 ELMRRIHKLEPELQHYGCMVDILGRA---------GHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNY--------ENL  533 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~  533 (634)
                      +.+.+.   .|+...+..+...|...         |++++|++.++++ ...| +...|..+..+|...        |++
T Consensus       161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            999873   57778899999999999         9999999999998 3344 477899999999888        999


Q ss_pred             hHHHHHHHHHhccCC---CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          534 NVGEPVAKHLIGMDS---SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       534 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ++|+..++++++++|   .++..|..++.+|...|++++|.+.++++.+..
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD  288 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999   999999999999999999999999999997654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.22  E-value=1.7e-09  Score=107.42  Aligned_cols=260  Identities=10%  Similarity=-0.044  Sum_probs=160.4

Q ss_pred             HHHHHcCChHHHHHHhhhCC----CCCh----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHHHH
Q 047120          289 DGYAKLGRVDIARRLFDEMP----KRDV----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD----ASLVIVLS  356 (634)
Q Consensus       289 ~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~  356 (634)
                      ..+...|++++|...+++..    ..+.    .+++.+...+...|++++|...+++......-.++.    .++..+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34445556655555554432    1111    134555566666777777777777665321111121    23445556


Q ss_pred             HHHccCChHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C------ChhHHHHHH
Q 047120          357 AIAQLGHIDKGVAIHRYLEKD----QFS--L-NGKHGVALIDMYSKCGSIENAIKVFEQIED--G------SVDHWNAMI  421 (634)
Q Consensus       357 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~li  421 (634)
                      .+...|++++|...++...+.    +..  | ....+..+...+...|++++|...+++...  +      ....+..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            667777777777777766542    221  2 234555677777788888888888776541  1      123577778


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHhHHhcCccc--ChhHHHHHHH
Q 047120          422 NGLAIHGLGELAFDLLMEMERLSIEPD--DITFT----GLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVD  493 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~  493 (634)
                      ..+...|++++|...+++.....-.++  .....    ..+..+...|++++|...++.......-.+  ....+..+..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            888888999999998888765321221  11111    233446788999999999888765211111  1224567788


Q ss_pred             HHhccCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          494 ILGRAGHIEAARNLIEDM-------PMEPND-VIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       494 ~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      .+...|++++|.+.+++.       +..++. ..+..+..++...|+.++|...++++++..+
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            888999999999888876       111222 2556667778889999999999999987754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.20  E-value=1.7e-10  Score=110.13  Aligned_cols=186  Identities=10%  Similarity=0.009  Sum_probs=118.3

Q ss_pred             HhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 047120          392 MYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLSI---EPD--DITFTGLLN  457 (634)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~  457 (634)
                      .|...|++++|...|++...     .+    ..+|+.+..+|...|++++|+..+++..+...   .+.  ..++..+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555666666666554431     11    33566777777777777777777776654210   111  246777888


Q ss_pred             HHhcc-CCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH--------HHHHHH
Q 047120          458 ACAHA-GLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND--------VIWRTL  523 (634)
Q Consensus       458 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l  523 (634)
                      .|... |++++|+..|+++.+...-..+    ..++..++..|.+.|++++|+..++++ ...|+.        ..|..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            88885 8888888888887763211111    345778888889999999999988876 222221        156677


Q ss_pred             HHHHHhcCChhHHHHHHHHHhccCCCCCch-----HHHHHHHHh--cCCCchHHHHHHHHH
Q 047120          524 LSACRNYENLNVGEPVAKHLIGMDSSNSSS-----YVLLSNMFA--GLGMWNDARRVRSMM  577 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~  577 (634)
                      ..++...|++++|+..++++++++|..+..     +..++..+.  ..+++++|+..++++
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            777888899999999999999988876553     344555554  456777888777554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.17  E-value=3e-10  Score=107.68  Aligned_cols=222  Identities=12%  Similarity=0.098  Sum_probs=155.4

Q ss_pred             HccCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC-------C----ChhHHHHH
Q 047120          359 AQLGHIDKGVAIHRYLEKD-------QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED-------G----SVDHWNAM  420 (634)
Q Consensus       359 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l  420 (634)
                      ...|++++|+.++++..+.       ..+....++..+...|...|++++|+..++++.+       +    ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567888888888777652       2233467788899999999999999999987652       1    24478889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----Cccc-ChhH
Q 047120          421 INGLAIHGLGELAFDLLMEMERL------SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH-----KLEP-ELQH  487 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~  487 (634)
                      ...|...|++++|...+++..+.      .-.|+ ..++..+...+...|++++|..+++++.+..     +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764      11233 4578888899999999999999999987731     1122 3566


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCC
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-P---------MEPN-DVIWRTLLSACRNYEN------LNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~  550 (634)
                      +..+...|.+.|++++|.+.++++ .         ..+. ...|..+.......+.      +..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            888999999999999999998876 1         1222 2234444433333333      333333333333333555


Q ss_pred             CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          551 SSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +..+..++.+|...|++++|..++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            668999999999999999999999988653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.15  E-value=4.5e-10  Score=119.69  Aligned_cols=162  Identities=15%  Similarity=0.184  Sum_probs=133.0

Q ss_pred             chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047120          382 NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLN  457 (634)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~  457 (634)
                      +...++.+..+|.+.|++++|++.|++..   ..+..+|+.+..+|.+.|++++|++.|++..+.  .|+ ...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            45667777778888888888888887765   335678888888899999999999999988874  565 568888999


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLN  534 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~  534 (634)
                      ++...|++++|++.|+++.+.   .| +...|..+..+|.+.|++++|++.|+++ .+.|+ ...+..++..+...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            999999999999999988873   34 4677889999999999999999999987 55565 678889999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 047120          535 VGEPVAKHLIGMDS  548 (634)
Q Consensus       535 ~a~~~~~~~~~~~p  548 (634)
                      +|.+.+++++++.|
T Consensus       163 ~A~~~~~kal~l~~  176 (723)
T 4gyw_A          163 DYDERMKKLVSIVA  176 (723)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCh
Confidence            99999999887653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.10  E-value=2.4e-09  Score=102.11  Aligned_cols=201  Identities=12%  Similarity=-0.008  Sum_probs=136.0

Q ss_pred             HHHccCChHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHH
Q 047120          357 AIAQLGHIDKGVAIHRYLEKD----QFSLN-GKHGVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMIN  422 (634)
Q Consensus       357 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~  422 (634)
                      .+...|++++|...+..+.+.    |.++. ..++..+..+|.+.|++++|+..|++..+     .+    ..+++.+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455667777777777666542    22222 35677777777788888888777776642     11    346788888


Q ss_pred             HHHHc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh-----hHHHHH
Q 047120          423 GLAIH-GLGELAFDLLMEMERLSIE-PD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-----QHYGCM  491 (634)
Q Consensus       423 ~~~~~-~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l  491 (634)
                      .|... |++++|+..|++..+.... .+    ..++..+...+...|++++|+..|+.+.+...-.+..     ..|..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            88886 9999999999987753110 01    3468888899999999999999999988732211221     156778


Q ss_pred             HHHHhccCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120          492 VDILGRAGHIEAARNLIEDM-PMEPNDV------IWRTLLSACR--NYENLNVGEPVAKHLIGMDSSNSSSYVLL  557 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  557 (634)
                      +.++...|++++|...+++. .+.|+..      .+..++.++.  ..+++++|+..|+++++++|.....+..+
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~  280 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence            88899999999999999987 5555522      3444555554  46778899999988888777554444333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.09  E-value=3.4e-09  Score=96.70  Aligned_cols=181  Identities=10%  Similarity=0.015  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhccC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHH
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIED--GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD----ITF  452 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~  452 (634)
                      +..+..+...+...|++++|+..|+++.+  |+    ...+..+..+|.+.|++++|+..|+++.+.  .|+.    ..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            34455566667777777777777777652  22    235666777777777777777777777764  3332    134


Q ss_pred             HHHHHHHhc------------------cCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhCCC
Q 047120          453 TGLLNACAH------------------AGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDMPM  513 (634)
Q Consensus       453 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  513 (634)
                      ..+..++..                  .|++++|...|+.+.+.   .|+ ...+......    +......        
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH--------
Confidence            444444433                  34455555555554432   122 1111111000    0000000        


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS---SSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       514 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                         ......+...+.+.|++++|+..++++++..|.++   ..+..++.+|.+.|++++|.+.++++...+..
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence               00113456678899999999999999999999886   57999999999999999999999999887654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=2e-09  Score=100.87  Aligned_cols=184  Identities=13%  Similarity=0.016  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIED--G-S---VDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD-DITFTG  454 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~  454 (634)
                      ...+..+...+.+.|++++|+..|+++.+  | +   ...+..+..+|...|++++|+..|++..+... .|. ...+..
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            34444455555566666666666665542  1 2   34555566666666666666666666665311 112 234555


Q ss_pred             HHHHHhc--------cCCHHHHHHHHHHhHHhcCcccChhHH-----------------HHHHHHHhccCCHHHHHHHHH
Q 047120          455 LLNACAH--------AGLVKEGLLCFELMRRIHKLEPELQHY-----------------GCMVDILGRAGHIEAARNLIE  509 (634)
Q Consensus       455 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~  509 (634)
                      +..++..        .|++++|+..|+.+.+...-  +....                 ..+...|.+.|++++|+..|+
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            5555555        66666666666666653211  11222                 456788889999999999988


Q ss_pred             hC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCch
Q 047120          510 DM-PMEPN----DVIWRTLLSACRNY----------ENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWN  568 (634)
Q Consensus       510 ~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~  568 (634)
                      ++ ...|+    ...+..+..++...          |++++|+..++++++..|+++.   ....+..++.+.|+++
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence            87 32333    44677777777755          8889999999999999998865   3444555554444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=9.9e-09  Score=92.49  Aligned_cols=173  Identities=11%  Similarity=-0.089  Sum_probs=138.1

Q ss_pred             HHHHHHhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 047120          402 AIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG----LVKEGLLCFELMR  476 (634)
Q Consensus       402 A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~  476 (634)
                      |++.|++.. ..++..+..+...|...+++++|+..|++..+.|   +...+..+...|.. +    ++++|..+|+...
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            344444443 3466777778888888889999999999888765   56677777777877 6    8999999999987


Q ss_pred             HhcCcccChhHHHHHHHHHhc----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 047120          477 RIHKLEPELQHYGCMVDILGR----AGHIEAARNLIEDM-PMEPN---DVIWRTLLSACRN----YENLNVGEPVAKHLI  544 (634)
Q Consensus       477 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~  544 (634)
                      +    .-+...+..|...|..    .+++++|++.|++. ...|.   +..+..|...|..    .+++++|..+++++.
T Consensus        81 ~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 E----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             H----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             H----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            6    2356677788888887    88999999999987 44453   7788888888887    789999999999999


Q ss_pred             ccCCCCCchHHHHHHHHhcC-C-----CchHHHHHHHHHHhCCCc
Q 047120          545 GMDSSNSSSYVLLSNMFAGL-G-----MWNDARRVRSMMKERNLK  583 (634)
Q Consensus       545 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~  583 (634)
                      +. |.++..+..|+.+|... |     ++++|..++++..+.|..
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            88 66778999999998754 3     899999999999887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.06  E-value=2.1e-08  Score=93.50  Aligned_cols=238  Identities=9%  Similarity=0.009  Sum_probs=118.1

Q ss_pred             HHcCChHHHHHHhhhCCCCCh-hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 047120          292 AKLGRVDIARRLFDEMPKRDV-VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI  370 (634)
Q Consensus       292 ~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  370 (634)
                      .-.|++..++.-...+...+. ..-.-+.+++...|++....          .-.|....+..+... ...+    ++..
T Consensus        24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~-~~~~----a~~~   88 (310)
T 3mv2_B           24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQF-LDTK----NIEE   88 (310)
T ss_dssp             HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred             HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHH-hccc----HHHH
Confidence            345777776665555443222 22223446666666665310          112332233222222 2222    4455


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047120          371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG-----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI  445 (634)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  445 (634)
                      +++..+.+ .++......+..++...|++++|++++.+....     +...+..++..+.+.|+.+.|.+.+++|.+.  
T Consensus        89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--  165 (310)
T 3mv2_B           89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--  165 (310)
T ss_dssp             HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence            55554443 333444445566666666666666666665322     3345555666666666666666666666553  


Q ss_pred             CC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC--
Q 047120          446 EP-----DDITFTGLLNA--CAHAG--LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM--  513 (634)
Q Consensus       446 ~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--  513 (634)
                      .|     +..+...+..+  ....|  ++.+|..+|+++...   .|+...-..+..++.+.|++++|.+.++.+ ..  
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p  242 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY  242 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            44     23444444444  22223  666666666666542   233112222333566666666666666543 11  


Q ss_pred             ---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          514 ---------EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       514 ---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                               +.|+.++..++......|+  +|.++++++.+..|++|.
T Consensus       243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence                     2234444444444444454  566666666666666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.06  E-value=2.1e-10  Score=97.07  Aligned_cols=141  Identities=6%  Similarity=-0.076  Sum_probs=103.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          422 NGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      ..+...|++++|+..++.....  .|+ ...+..+...|.+.|++++|++.|+++.+..  +.+...|..+..+|.+.|+
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence            3444556677777777766542  333 2355667777888888888888888877631  2346678888888888888


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120          501 IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPV-AKHLIGMDSSNSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       501 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  566 (634)
                      +++|+..|+++ .+.|+ ..+|..+...+.+.|++++|.+. ++++++++|.++.+|...+.++...|+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            88888888876 44554 67888888888888988776654 589999999999999998888888775

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.06  E-value=2.3e-09  Score=100.49  Aligned_cols=169  Identities=9%  Similarity=-0.048  Sum_probs=138.5

Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-h
Q 047120          411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-L  485 (634)
Q Consensus       411 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~  485 (634)
                      ..+...+..+...+.+.|++++|+..|+++.+.  .|+    ...+..+..++.+.|++++|+..|+.+.+...-.|. .
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            446677888889999999999999999999985  444    468888999999999999999999999885322222 4


Q ss_pred             hHHHHHHHHHhc--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCChhHHHH
Q 047120          486 QHYGCMVDILGR--------AGHIEAARNLIEDM-PMEPN-DVIW-----------------RTLLSACRNYENLNVGEP  538 (634)
Q Consensus       486 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~a~~  538 (634)
                      ..+..+..++..        .|++++|+..|+++ ...|+ ....                 ..+...+...|++++|+.
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            557778888888        99999999999987 33343 2222                 556778999999999999


Q ss_pred             HHHHHhccCCCCC---chHHHHHHHHhcC----------CCchHHHHHHHHHHhCC
Q 047120          539 VAKHLIGMDSSNS---SSYVLLSNMFAGL----------GMWNDARRVRSMMKERN  581 (634)
Q Consensus       539 ~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~  581 (634)
                      .++++++..|.++   ..+..++.+|...          |++++|...++++.+..
T Consensus       170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            9999999999854   4888999999877          89999999999997653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.05  E-value=2.7e-09  Score=88.12  Aligned_cols=127  Identities=13%  Similarity=0.144  Sum_probs=76.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRN  529 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~  529 (634)
                      +..+...+...|++++|..+++.+.+..  +.+...+..++..+...|++++|.+.++++ . .+.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            3344444445555555555555544321  123344445555555555555555555554 1 12335566666666777


Q ss_pred             cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .|++++|...++++++..|.++..+..++.++...|++++|.+.++++.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            777777777777777777777777777777777777777777777776543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.04  E-value=1.7e-09  Score=102.43  Aligned_cols=225  Identities=10%  Similarity=0.007  Sum_probs=158.3

Q ss_pred             HHcCCchHHHHHHHHHHhcC----C-CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CCC-CchhHHHHH
Q 047120          323 VRNGYSMKALEIFDNMQCEL----Y-LHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKD------QFS-LNGKHGVAL  389 (634)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~~~----~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l  389 (634)
                      ...|++++|+.+|++.....    + -.| ...++..+...+...|++++|...++.+.+.      +.. ....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45678888888887776421    1 112 3467888889999999999999999988764      222 345778889


Q ss_pred             HHHhHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 047120          390 IDMYSKCGSIENAIKVFEQIED-------G----SVDHWNAMINGLAIHGLGELAFDLLMEMERL------SIEPD-DIT  451 (634)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~  451 (634)
                      ..+|...|++++|...|+++..       +    ....+..+...|...|++++|...+++..+.      +-.|+ ..+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            9999999999999999988752       1    2447888999999999999999999998864      11333 457


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhc------CcccC-hhHHHHHHHHHhcc------CCHHHHHHHHHhCC-CCCC-
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIH------KLEPE-LQHYGCMVDILGRA------GHIEAARNLIEDMP-MEPN-  516 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p~-  516 (634)
                      +..+...+...|++++|..+++.+.+..      ...+. ...+..+...+...      ..+..+...++... ..|+ 
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            8889999999999999999999987631      11222 23344444444332      33455555555553 2233 


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      ..++..+...|...|++++|...++++++..
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            4578888999999999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.00  E-value=6.9e-09  Score=98.48  Aligned_cols=175  Identities=8%  Similarity=-0.054  Sum_probs=138.6

Q ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       399 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      .+.....+......+...+..+...+.+.|++++|...|++..+.  .|+ ...+..+...+...|++++|...++.+..
T Consensus       102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            334445555555555667777888888999999999999998875  564 56888888999999999999999998876


Q ss_pred             hcCcccChhHH-HHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--Cc
Q 047120          478 IHKLEPELQHY-GCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN--SS  552 (634)
Q Consensus       478 ~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~  552 (634)
                      .   .|+.... ......+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+  +.
T Consensus       180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~  256 (287)
T 3qou_A          180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ  256 (287)
T ss_dssp             G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred             h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence            3   4554332 23333466778888888888877 3344 57788999999999999999999999999999988  78


Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          553 SYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       553 ~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      .+..++.+|...|+.++|...+++..
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            99999999999999999999988764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.00  E-value=5.5e-08  Score=90.68  Aligned_cols=159  Identities=9%  Similarity=-0.028  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-----ChhHHHH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-----ELQHYGC  490 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~  490 (634)
                      +..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+.   .|     +..+...
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHH
Confidence            33444444555555555555554443321112 234444444555555555555555554431   22     1222222


Q ss_pred             HHHH--HhccC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc----------CCCCCchHH
Q 047120          491 MVDI--LGRAG--HIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM----------DSSNSSSYV  555 (634)
Q Consensus       491 l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~~  555 (634)
                      |+.+  ....|  ++.+|..+|+++ ...|+..+-..++.++.+.|++++|++.++.+.+.          +|.++.++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            3222  11112  455555555554 22233122222222444455555555555544443          244444444


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          556 LLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       556 ~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .++.+....|+  +|.++++++.+.
T Consensus       260 N~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHHHHhCh--HHHHHHHHHHHh
Confidence            44444444443  444555544443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.00  E-value=1.5e-09  Score=116.26  Aligned_cols=168  Identities=11%  Similarity=0.019  Sum_probs=100.8

Q ss_pred             HccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHc
Q 047120          359 AQLGHIDKGVAIHRYLE--------KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIH  427 (634)
Q Consensus       359 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  427 (634)
                      ...|++++|+..++.+.        +. .+.+...+..+..++...|++++|++.|+++.   ..+...|..+..+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            56677777777777666        22 23345566666666677777777777766655   23555666666666677


Q ss_pred             CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHH
Q 047120          428 GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN  506 (634)
Q Consensus       428 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  506 (634)
                      |++++|++.|++..+.  .|+ ...+..+..++.+.|++++ +..|+++.+..  +.+...|..+..+|.+.|++++|++
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777766653  343 4566666666666677666 66666665521  2234556666666667777777777


Q ss_pred             HHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047120          507 LIEDM-PMEPN-DVIWRTLLSACRNYEN  532 (634)
Q Consensus       507 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~  532 (634)
                      .|+++ ...|+ ...+..+..++...|+
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            66666 44555 3455555555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.96  E-value=1.7e-08  Score=83.12  Aligned_cols=131  Identities=12%  Similarity=0.128  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL  495 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  495 (634)
                      .|..++..+...|++++|..+++++.+.. ..+...+..+...+...|++++|..+++.+....  +.+...+..++..+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence            46667778888888888888888887652 2346677778888888888999998888887631  33456777888888


Q ss_pred             hccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          496 GRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       496 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      .+.|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++.+|.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            8999999999888887 2 2345677888888899999999999999999888775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.95  E-value=1e-09  Score=92.81  Aligned_cols=123  Identities=7%  Similarity=-0.021  Sum_probs=102.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYE  531 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g  531 (634)
                      |...+...|++++|+..++....   ..|+ ...+..+...|.+.|++++|++.|+++ .+.| +..+|..+...+...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45566778999999999998765   2343 455678999999999999999999998 4455 4779999999999999


Q ss_pred             ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHH-HHHHHhC
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV-RSMMKER  580 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~  580 (634)
                      ++++|+..++++++++|.++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887665 5777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.93  E-value=6.7e-09  Score=90.59  Aligned_cols=155  Identities=7%  Similarity=-0.018  Sum_probs=94.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH-Hhc
Q 047120          420 MINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI-LGR  497 (634)
Q Consensus       420 li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  497 (634)
                      +...+...|++++|...|++..+.  .|+ ...+..+...+...|++++|+..++.+...   .|+...+..+... +.+
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence            344444555555555555554432  232 334555555555555555555555555432   2222222111111 111


Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--CchHHHHHHHHhcCCCchHHHHH
Q 047120          498 AGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN--SSSYVLLSNMFAGLGMWNDARRV  573 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~  573 (634)
                      .+...+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|..  +..+..++.++...|+.++|...
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            12223356666655 3345 47788888888999999999999999999999865  55889999999999999999999


Q ss_pred             HHHHHh
Q 047120          574 RSMMKE  579 (634)
Q Consensus       574 ~~~~~~  579 (634)
                      +++...
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.89  E-value=6.3e-09  Score=87.41  Aligned_cols=100  Identities=9%  Similarity=0.003  Sum_probs=86.9

Q ss_pred             ccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          482 EPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       482 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      .|+ ...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|.++..|..++
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg  111 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG  111 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            443 556778888899999999999999887 4444 5778899999999999999999999999999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHhCC
Q 047120          559 NMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .+|.+.|++++|+..|++..+..
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999987754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.88  E-value=3.2e-08  Score=88.83  Aligned_cols=129  Identities=8%  Similarity=-0.053  Sum_probs=97.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh
Q 047120          418 NAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG  496 (634)
Q Consensus       418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  496 (634)
                      +.+..+|...|++++|+..|++..+.  .|+ ...+..+..++...|++++|...|+++.+..  +.+...+..+..+|.
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            33888899999999999999999875  554 6688899999999999999999999998741  334677888888887


Q ss_pred             ccCC--HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120          497 RAGH--IEAARNLIEDMP-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN  550 (634)
Q Consensus       497 ~~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  550 (634)
                      ..|+  .+.+...++... ..|....+.....++...|++++|+..|+++++++|.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            6654  445666666663 22333345555666777899999999999999999863

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=6.7e-08  Score=92.73  Aligned_cols=220  Identities=10%  Similarity=-0.007  Sum_probs=154.8

Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI  403 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  403 (634)
                      ..|++++|.+++++..+..  +..   +      +...++++.|...|..+               ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            3577888999998887541  111   0      11146777777776654               45677788888888


Q ss_pred             HHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHH
Q 047120          404 KVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLS---IEPD--DITFTGLLNACAHAGLVKEGL  469 (634)
Q Consensus       404 ~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~  469 (634)
                      ..|.+...     .+    ..+|+.+...|...|++++|+..|++..+.-   -.|.  ..++..+...|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            88876642     11    3478888899999999999999998866431   1222  3478888889988 9999999


Q ss_pred             HHHHHhHHhcCccc----ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHH
Q 047120          470 LCFELMRRIHKLEP----ELQHYGCMVDILGRAGHIEAARNLIEDM-PM---EPN----DVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       470 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      ..|+++.....-..    ...++..+...|.+.|++++|++.++++ .+   .++    ...+..++..+...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999876321111    1456888999999999999999999887 21   122    225666677778889999999


Q ss_pred             HHHHHHhccCCCCCch-----HHHHHHHHhcCCCchHHHH
Q 047120          538 PVAKHLIGMDSSNSSS-----YVLLSNMFAGLGMWNDARR  572 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~  572 (634)
                      ..+++++ ..|..+..     ...++..+ ..|+.+.+.+
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            9999999 88876543     33445545 5677666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.87  E-value=1.8e-08  Score=106.09  Aligned_cols=159  Identities=13%  Similarity=0.041  Sum_probs=125.4

Q ss_pred             cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 047120          396 CGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       396 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      .|++++|++.|++..+   .+...|..+...|...|++++|.+.+++..+.  .|+ ...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999998863   35678999999999999999999999999975  554 67899999999999999999999


Q ss_pred             HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcc
Q 047120          472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNY---ENLNVGEPVAKHLIGM  546 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~  546 (634)
                      ++++.+..  +.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+...   |++++|...++++++.
T Consensus        80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998742  334678899999999999999999999987 3344 477888899999999   9999999999999999


Q ss_pred             CCCCCchHHHHH
Q 047120          547 DSSNSSSYVLLS  558 (634)
Q Consensus       547 ~p~~~~~~~~l~  558 (634)
                      +|.+...+..++
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            999998888777

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.86  E-value=9.1e-08  Score=102.52  Aligned_cols=182  Identities=12%  Similarity=0.020  Sum_probs=114.9

Q ss_pred             HHcCCchHHHHHHHHHHh-----cCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120          323 VRNGYSMKALEIFDNMQC-----ELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC  396 (634)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~-----~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (634)
                      ...|++++|++.+++...     .....| +...+..+..++...|++++|+..++.+.+.. +.+...+..+..+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            566777777777777761     001223 33556666667777777777777777776653 33556666777777777


Q ss_pred             CCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120          397 GSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       397 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      |++++|++.|+++.   ..+...|..+..+|.+.|++++ ++.|++..+.  .|+ ...|..+..++.+.|++++|+..|
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777777665   2355567777777777777777 7777777664  443 456777777777777777777777


Q ss_pred             HHhHHhcCcccC-hhHHHHHHHHHhccCC--------HHHHHHHHHhC
Q 047120          473 ELMRRIHKLEPE-LQHYGCMVDILGRAGH--------IEAARNLIEDM  511 (634)
Q Consensus       473 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~  511 (634)
                      +++.+   +.|+ ...+..+..++...|+        +++|.+.+..+
T Consensus       558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            77654   2343 4456666666655443        55555555555

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.85  E-value=1.6e-08  Score=82.25  Aligned_cols=114  Identities=10%  Similarity=0.010  Sum_probs=78.5

Q ss_pred             CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047120          445 IEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWR  521 (634)
Q Consensus       445 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  521 (634)
                      +.|+. ..+......+.+.|++++|+..|+++.+..  +.+...|..+..+|.+.|++++|++.++++ .+.| +...|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            44543 356666777777777777777777776531  234566777777777777777777777766 3333 356777


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      .+..++...|++++|+..|+++++++|.++.++..|+.+
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            777777777788888888888877777777777766654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.84  E-value=7.9e-08  Score=91.61  Aligned_cols=164  Identities=7%  Similarity=-0.065  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hh
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-----ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQ  486 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~  486 (634)
                      .+...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...++.+.....-..+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455677788889999999998887765322111     12344556677888999999999888752211112    34


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CC
Q 047120          487 HYGCMVDILGRAGHIEAARNLIEDM----PMEPN-----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS------NS  551 (634)
Q Consensus       487 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~  551 (634)
                      +|+.++..|...|++++|+..++++    ...|+     ..++..+...|...|++++|...++++++..+.      .+
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888999999999999999998876    11222     257888899999999999999999999877532      14


Q ss_pred             chHHHHHHHHhcCCCchHH-HHHHHHHHh
Q 047120          552 SSYVLLSNMFAGLGMWNDA-RRVRSMMKE  579 (634)
Q Consensus       552 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  579 (634)
                      .+|..++.+|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            5788999999999999999 777887754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.84  E-value=1.3e-08  Score=82.91  Aligned_cols=101  Identities=14%  Similarity=0.196  Sum_probs=90.4

Q ss_pred             cccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120          481 LEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL  557 (634)
Q Consensus       481 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  557 (634)
                      +.|+ ...+...+..|.+.|++++|++.|+++ ...| +...|..+..++.+.|++++|+..++++++++|.++..|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4454 456788899999999999999999987 4444 578999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhCC
Q 047120          558 SNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       558 ~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +.+|...|++++|++.+++..+..
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHC
Confidence            999999999999999999997653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.83  E-value=3.5e-07  Score=87.06  Aligned_cols=161  Identities=8%  Similarity=-0.039  Sum_probs=121.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHH
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSI-EPDDI----TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYG  489 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~  489 (634)
                      ..+..+...|++++|..++++..+... .|+..    .+..+...+...+++++|+..++.+.....-.++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677888999999999998876421 22211    2334666777888999999999998873222223    23688


Q ss_pred             HHHHHHhccCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchH
Q 047120          490 CMVDILGRAGHIEAARNLIEDM-----PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSY  554 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~  554 (634)
                      .++..|...|++++|+..++++     ..+.+    ..++..+...|.+.|++++|...++++++..+..      +.+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8999999999999999988876     11112    2377888899999999999999999999876332      5589


Q ss_pred             HHHHHHHhcCCC-chHHHHHHHHHHh
Q 047120          555 VLLSNMFAGLGM-WNDARRVRSMMKE  579 (634)
Q Consensus       555 ~~l~~~~~~~g~-~~~A~~~~~~~~~  579 (634)
                      ..++.+|.+.|+ +++|.+.++++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999999995 5999999988854

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.83  E-value=6.4e-08  Score=87.26  Aligned_cols=127  Identities=10%  Similarity=-0.102  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL  495 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  495 (634)
                      .+..+...+...|++++|+..|++..    .|+...+..+..++...|++++|...++.+....  +.+...+..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence            34455556666666666666666552    4455666666666666666666666666665521  22344555666666


Q ss_pred             hccCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          496 GRAGHIEAARNLIEDM-PMEP-N----------------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       496 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      ...|++++|++.++++ ...| +                ...+..+..++...|++++|...++++++..|
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            6666666666666555 1111 1                14555555566666666666666666665554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.82  E-value=5.9e-08  Score=102.15  Aligned_cols=146  Identities=10%  Similarity=-0.025  Sum_probs=109.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 047120          361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLL  437 (634)
Q Consensus       361 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~  437 (634)
                      .|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+   .+...|..+...|...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            478899999999887753 44678888999999999999999999998763   35678999999999999999999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc---CCHHHHHHHHHhC
Q 047120          438 MEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA---GHIEAARNLIEDM  511 (634)
Q Consensus       438 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~  511 (634)
                      ++..+.  .|+ ...+..+..++...|++++|.+.++++.+..  +.+...+..+..++...   |++++|.+.++++
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            999875  454 6788999999999999999999999998742  23467788899999999   9999999999887

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.81  E-value=6.1e-07  Score=91.67  Aligned_cols=366  Identities=10%  Similarity=-0.024  Sum_probs=207.2

Q ss_pred             ccC-ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCC-hHHHHH
Q 047120          131 RLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDGYVKSGN-IESARE  206 (634)
Q Consensus       131 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~  206 (634)
                      +.| +++.|+.+|+.+.+.-  |.              |+++.+..+|++...  |++..|...+.-..+.+. .+....
T Consensus         6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~   69 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE   69 (493)
T ss_dssp             ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred             HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence            345 4777888888776642  22              889999999998764  788888888877776653 344556


Q ss_pred             HHhhCccC----CCChhHHHHHHHHHHh----cCCcHHHHHHHHhhCCC-CCchHHHHHHHHHH---hcCChHHHHHHHh
Q 047120          207 LFDSMPIR----ERNLISWNSVLNGYAQ----LKSGLQFAWQIFEKMPE-RDLISWNSMLHGCV---KCGKMDDAQALFD  274 (634)
Q Consensus       207 ~~~~m~~~----~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~A~~~~~  274 (634)
                      +|+.....    ..+...|...+.-+..    .++ ++.+..+|++... |.. .+..+-..|.   ...+...+..++.
T Consensus        70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~-~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~  147 (493)
T 2uy1_A           70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR-IEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVG  147 (493)
T ss_dssp             HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH-HHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHH
Confidence            66655542    3455666666655432    234 7778888888766 321 1122222221   1111222222222


Q ss_pred             hCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHHcC--C-----chHHHHHHHHHHhcCC
Q 047120          275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNG--Y-----SMKALEIFDNMQCELY  343 (634)
Q Consensus       275 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~m~~~~~  343 (634)
                      +               .  .+.+..|..+++.+..    .+...|...+.--...+  -     .+.+..+|+++...  
T Consensus       148 ~---------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--  208 (493)
T 2uy1_A          148 D---------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--  208 (493)
T ss_dssp             H---------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--
T ss_pred             H---------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--
Confidence            1               1  0122223322222211    13345555444322221  1     23467788888754  


Q ss_pred             CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH-HHHHHhcc------------
Q 047120          344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA-IKVFEQIE------------  410 (634)
Q Consensus       344 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~------------  410 (634)
                      .+.+...|...+.-+.+.|+.+.|..+++.+...  +.+...+...    ....+.++. ..+.+...            
T Consensus       209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~  282 (493)
T 2uy1_A          209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAVYGDLKRKYSMGEAESAEKVFS  282 (493)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHHHHHHHHHTC----------CH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence            2334566777777777888999999999988887  4444333322    221111111 11221110            


Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCcccChhHHH
Q 047120          411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH-AGLVKEGLLCFELMRRIHKLEPELQHYG  489 (634)
Q Consensus       411 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~  489 (634)
                      ......|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+..+  .+...+.
T Consensus       283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~  358 (493)
T 2uy1_A          283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHH
Confidence            011235666777777778889999999888 32 12233444432222222 2368889999998887432  2344566


Q ss_pred             HHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      ..++...+.|+.+.|..+|+++.  .....|...+..-...|+.+.+..+++++.+
T Consensus       359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67777788899999999999873  3567788777777778898888888888774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.80  E-value=8.4e-08  Score=87.36  Aligned_cols=185  Identities=14%  Similarity=0.038  Sum_probs=132.6

Q ss_pred             HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-Chh---HHHH
Q 047120          348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-L-NGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVD---HWNA  419 (634)
Q Consensus       348 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~~~  419 (634)
                      ...+..+...+...|++++|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+  | +..   .+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            345556677788999999999999999986422 1 245778889999999999999999999862  3 222   4556


Q ss_pred             HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120          420 MINGLAI------------------HGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHK  480 (634)
Q Consensus       420 li~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  480 (634)
                      +..++..                  .|++++|+..|+++.+.  .|+.. .+....              .+..+...  
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~--------------~l~~~~~~--  145 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK--------------RLVFLKDR--  145 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH--------------HHHHHHHH--
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH--------------HHHHHHHH--
Confidence            6666654                  56899999999999975  56543 222111              11111110  


Q ss_pred             cccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120          481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS  553 (634)
Q Consensus       481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  553 (634)
                         .......+...|.+.|++++|+..|+++ ...|+    ...+..+..++.+.|+.++|+..++++....|.+...
T Consensus       146 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          146 ---LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             ---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence               0112235678889999999999999987 33344    2467888889999999999999999999888876553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.79  E-value=2.4e-07  Score=83.35  Aligned_cols=174  Identities=9%  Similarity=-0.108  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 047120          367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED-GSVDHWNAMINGLAIHG----LGELAFDLLMEME  441 (634)
Q Consensus       367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~A~~~~~~m~  441 (634)
                      |...|+...+.|   ++..+..+...|...+++++|+..|++..+ .++..+..|...|.. +    ++++|+..|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            444555555443   455566666666667777777777766553 355666667777666 5    7888888888887


Q ss_pred             HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcc-cChhHHHHHHHHHhc----cCCHHHHHHHHHhC-
Q 047120          442 RLSIEPDDITFTGLLNACAH----AGLVKEGLLCFELMRRIHKLE-PELQHYGCMVDILGR----AGHIEAARNLIEDM-  511 (634)
Q Consensus       442 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-  511 (634)
                      +.|   +...+..+...|..    .+++++|+.+|+++.+ .+.. .....+..|...|..    .+++++|++.|++. 
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            654   56677777777776    7888889888888876 2211 115677778888877    78899999998887 


Q ss_pred             CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 047120          512 PMEPNDVIWRTLLSACRNY-E-----NLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       512 ~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p  548 (634)
                      ...++...+..|...|... |     ++++|..+++++.+.+.
T Consensus       157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            3335566777777777543 3     89999999999888764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.77  E-value=1.5e-08  Score=85.25  Aligned_cols=96  Identities=10%  Similarity=0.041  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            445666777777788888888777776 2233 56677777777888888888888888888888888888888888888


Q ss_pred             cCCCchHHHHHHHHHHhC
Q 047120          563 GLGMWNDARRVRSMMKER  580 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~~~~  580 (634)
                      ..|++++|.+.+++..+.
T Consensus       101 ~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            888888888888777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.77  E-value=8.9e-08  Score=83.32  Aligned_cols=156  Identities=14%  Similarity=0.056  Sum_probs=113.2

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA-CA  460 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~  460 (634)
                      ....+...+...|++++|...|+++.+   .+...+..+...+...|++++|+..+++....  .|+...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence            344566677888888888888888763   46667888888888889999999888887654  3444333222211 11


Q ss_pred             ccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~  535 (634)
                      ..+...+|...++.+.+.   .| +...+..+...+...|++++|...++++ ...|+   ...+..+...+...|+.++
T Consensus        86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            222223467788887763   34 4677888999999999999999999887 55554   5578888889999999999


Q ss_pred             HHHHHHHHhc
Q 047120          536 GEPVAKHLIG  545 (634)
Q Consensus       536 a~~~~~~~~~  545 (634)
                      |...|++++.
T Consensus       163 A~~~y~~al~  172 (176)
T 2r5s_A          163 IASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.76  E-value=3.3e-07  Score=82.16  Aligned_cols=185  Identities=15%  Similarity=0.016  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120          314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM  392 (634)
Q Consensus       314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  392 (634)
                      .+......+...|++++|+..|++....   .|+... +.. .   .....               ..........+..+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-~---~~~~~---------------~~~~~~~~~~lg~~   63 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-T---NVDKN---------------SEISSKLATELALA   63 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-H---HSCTT---------------SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-h---hhcch---------------hhhhHHHHHHHHHH
Confidence            3444556677888888888888888743   554322 211 0   00000               01112233447778


Q ss_pred             hHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC--HH
Q 047120          393 YSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGL--VK  466 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~--~~  466 (634)
                      |.+.|++++|+..|++..   +.++..|..+...|...|++++|+..|++..+.  .|+ ...+..+..++...|+  ..
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHH
Confidence            888888888888888775   346678888888899999999999999988874  565 5677777777765543  34


Q ss_pred             HHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047120          467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLS  525 (634)
Q Consensus       467 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~  525 (634)
                      .+...++.+..   ..|....+.....++...|++++|+..|+++ ...|+......+..
T Consensus       142 ~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          142 KLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            44555554432   1222333444566677788999999999887 77788665554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.76  E-value=1.8e-06  Score=81.49  Aligned_cols=217  Identities=14%  Similarity=0.130  Sum_probs=106.2

Q ss_pred             CchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHh----HhcCCH
Q 047120          327 YSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLG--HIDKGVAIHRYLEKDQFSLNGKHGVALIDMY----SKCGSI  399 (634)
Q Consensus       327 ~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~  399 (634)
                      ..++|++++..+..   +.|+. ..|+.--..+...+  ++++++.+++.++... +-+..+++.-...+    ...+  
T Consensus        48 ~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~--  121 (306)
T 3dra_A           48 YSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN--  121 (306)
T ss_dssp             CSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred             CCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc--
Confidence            33567777777763   35543 34455555555555  6666666666665543 12223333222222    2220  


Q ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH--HHHHHHHHhH
Q 047120          400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVK--EGLLCFELMR  476 (634)
Q Consensus       400 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~  476 (634)
                                                ..+++++++++++++.+.  .| +..+|..-...+.+.|.++  +++..++.+.
T Consensus       122 --------------------------~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i  173 (306)
T 3dra_A          122 --------------------------NDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI  173 (306)
T ss_dssp             --------------------------TCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             --------------------------ccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence                                      003455555555555543  22 2334444444444444444  5555555555


Q ss_pred             HhcCcccChhHHHHHHHHHhccCC------HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhccC
Q 047120          477 RIHKLEPELQHYGCMVDILGRAGH------IEAARNLIEDM-P-MEPNDVIWRTLLSACRNYEN-LNVGEPVAKHLIGMD  547 (634)
Q Consensus       477 ~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~  547 (634)
                      +..  +-+...|+.-..++.+.|+      ++++++.++++ . .+-|...|+.+...+.+.|+ .+....+.+++++.+
T Consensus       174 ~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  251 (306)
T 3dra_A          174 DTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE  251 (306)
T ss_dssp             HHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred             HhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence            421  1233334444444444443      55555555554 1 22345555555555555554 233444555555544


Q ss_pred             ---CCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          548 ---SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       548 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                         |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus       252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence               55555666666666666666666666666653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.72  E-value=1.1e-07  Score=81.77  Aligned_cols=127  Identities=6%  Similarity=-0.041  Sum_probs=99.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACR  528 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~  528 (634)
                      .+..+...+...|++++|...++.+.+..  +.+...+..++.++...|++++|.+.+++. ... .+...|..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            55666667777888888888888776631  234667777888888888888888888876 323 35678888888999


Q ss_pred             hcCChhHHHHHHHHHhccCCCCCchHHHHHHH--HhcCCCchHHHHHHHHHHh
Q 047120          529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM--FAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~  579 (634)
                      ..|++++|...++++++.+|.++..+..+..+  +.+.|++++|++.+++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999999999998888555544  7888999999999987754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.72  E-value=3.4e-06  Score=79.49  Aligned_cols=232  Identities=7%  Similarity=-0.043  Sum_probs=158.5

Q ss_pred             HHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcC--CchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHH----Hcc
Q 047120          292 AKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNG--YSMKALEIFDNMQCELYLHPDD-ASLVIVLSAI----AQL  361 (634)
Q Consensus       292 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~----~~~  361 (634)
                      .+....++|+..++.+..  | +..+|+.-...+...|  +++++++.++.+...   .|.. ..|+.-...+    ...
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHHHHHHHHHhc
Confidence            334445789999998875  3 4567888888888888  999999999999965   4543 3444433333    333


Q ss_pred             ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChH--HHHHH
Q 047120          362 ---GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE--LAFDL  436 (634)
Q Consensus       362 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~  436 (634)
                         ++++++..+++.+.+..                                ..+..+|+.-.-.+.+.|.++  ++++.
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~--------------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~  168 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSD--------------------------------PKNHHVWSYRKWLVDTFDLHNDAKELSF  168 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence               45666666666555532                                223444444444555556655  77777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH-HHHHHH
Q 047120          437 LMEMERLSIEPDDITFTGLLNACAHAGL------VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA-ARNLIE  509 (634)
Q Consensus       437 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~  509 (634)
                      ++++.+.. .-|...|+.....+...+.      ++++++.++.+...  .+-|...|+.+...+.+.|+..+ +.++..
T Consensus       169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~  245 (306)
T 3dra_A          169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL  245 (306)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence            77777653 2245566666656666665      88888888888763  23456678888888888887544 455666


Q ss_pred             hC-CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCCchHHHHHHHH
Q 047120          510 DM-PM----EPNDVIWRTLLSACRNYENLNVGEPVAKHLIG-MDSSNSSSYVLLSNMF  561 (634)
Q Consensus       510 ~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~  561 (634)
                      +. ..    ..+...+..++..+.+.|+.++|.++++++.+ .+|.....|...+..+
T Consensus       246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l  303 (306)
T 3dra_A          246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL  303 (306)
T ss_dssp             TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred             HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence            65 22    34678888999999999999999999999996 7999888887766543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.70  E-value=6e-08  Score=93.07  Aligned_cols=197  Identities=7%  Similarity=-0.077  Sum_probs=149.5

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047120          360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME  439 (634)
Q Consensus       360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  439 (634)
                      ..|++++|..++++..+..-. .         .+...+++++|...|.+           ....|...|++++|...|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            357788899988887764211 1         11115788888888765           35678899999999999988


Q ss_pred             HHHCCC---CCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cccc-ChhHHHHHHHHHhccCCHHHHHHHHHh
Q 047120          440 MERLSI---EPD--DITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEP-ELQHYGCMVDILGRAGHIEAARNLIED  510 (634)
Q Consensus       440 m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  510 (634)
                      ..+...   .+.  ..+|..+...|...|++++|+..++++....   +-.. ...++..+...|.. |++++|++.+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            765311   111  3478889999999999999999999887632   1111 14568889999998 999999999988


Q ss_pred             C-CCC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------hHHHHHHHHhcCCCchHHHHHHHH
Q 047120          511 M-PME---PN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS------SYVLLSNMFAGLGMWNDARRVRSM  576 (634)
Q Consensus       511 ~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~  576 (634)
                      . .+.   .+    ..++..+...+...|++++|+..++++++..|.+..      .+..++.++...|++++|...+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 111   11    457888899999999999999999999998765432      667778888899999999999999


Q ss_pred             HH
Q 047120          577 MK  578 (634)
Q Consensus       577 ~~  578 (634)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.69  E-value=7.6e-07  Score=80.09  Aligned_cols=131  Identities=5%  Similarity=-0.138  Sum_probs=108.7

Q ss_pred             HHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120          386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV  465 (634)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  465 (634)
                      +..+...+...|++++|+..|++..+++...|..+...|...|++++|+..+++..+.. ..+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            44567778889999999999999988888899999999999999999999999988752 23467888999999999999


Q ss_pred             HHHHHHHHHhHHhcCc-------------cc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH
Q 047120          466 KEGLLCFELMRRIHKL-------------EP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND  517 (634)
Q Consensus       466 ~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  517 (634)
                      ++|...++.+.+...-             .| ....+..+..+|.+.|++++|.+.++++ ...|+.
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999998873211             11 1267888999999999999999999987 666654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.67  E-value=2e-07  Score=75.42  Aligned_cols=115  Identities=14%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 047120          449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSA  526 (634)
Q Consensus       449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~  526 (634)
                      ...+..+...+...|++++|..+++.+.+..  +.+...+..++..+.+.|++++|...++++ . .+.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            3466667777777888888888887776631  234566777788888888888888888776 2 23456778888888


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      +...|++++|...++++++..|.++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            899999999999999999999998888888888876544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.67  E-value=2.8e-07  Score=84.76  Aligned_cols=183  Identities=13%  Similarity=0.014  Sum_probs=120.3

Q ss_pred             hcCCHHHHHHHHHhccC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 047120          395 KCGSIENAIKVFEQIED---GSVDHWNAM-------INGLAIHGLGELAFDLLMEMERLSIEPD----------------  448 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------  448 (634)
                      ..++...|.+.|.++..   .....|..+       ...+.+.++..+++..+.+-.+  +.|+                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            45677777777776652   234466666       4555555555555555555443  2222                


Q ss_pred             ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH----H
Q 047120          449 ------DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND----V  518 (634)
Q Consensus       449 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~  518 (634)
                            ......+...+...|++++|.++|+.+...   .|+......+...+.+.|++++|+..|++....|+.    .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                  123334556677788888888888777642   343335556666788888888888888876333332    3


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMD--SS-NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+..+..++...|++++|+..|+++....  |. .+......+.++.+.|+.++|...|+++.....
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            56777778888888888888888887543  33 345777888888888888888888888876544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.67  E-value=8.6e-08  Score=79.99  Aligned_cols=96  Identities=10%  Similarity=-0.010  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            344555666677777777777777765 2233 45666777777777777777777777777777777777777777777


Q ss_pred             cCCCchHHHHHHHHHHhC
Q 047120          563 GLGMWNDARRVRSMMKER  580 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~~~~  580 (634)
                      ..|++++|.+.+++..+.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            777777777777776554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.67  E-value=1e-06  Score=83.48  Aligned_cols=82  Identities=7%  Similarity=-0.077  Sum_probs=37.3

Q ss_pred             ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a  536 (634)
                      ..++.++|...++.+...  -+.+...+..+...|...|++++|++.++++ ...|+   ...+..++..+...|+.++|
T Consensus       197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            334444444444444432  1122344444455555555555555555444 22222   33455555555555555555


Q ss_pred             HHHHHHHh
Q 047120          537 EPVAKHLI  544 (634)
Q Consensus       537 ~~~~~~~~  544 (634)
                      ...+++.+
T Consensus       275 ~~~~r~al  282 (287)
T 3qou_A          275 ASXYRRQL  282 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.67  E-value=1.6e-07  Score=76.76  Aligned_cols=118  Identities=8%  Similarity=-0.032  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 047120          449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSA  526 (634)
Q Consensus       449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~  526 (634)
                      ...+..+...+...|++++|...++.+....  +.+...+..++..+...|++++|.+.+++. ... .+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            3456666777777888888888888776631  234666777888888888888888888776 223 346788888888


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN  568 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  568 (634)
                      +...|++++|...++++++..|.++..+..++.++.+.|+++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999998888763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.67  E-value=1.6e-07  Score=77.10  Aligned_cols=116  Identities=9%  Similarity=0.011  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047120          449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSA  526 (634)
Q Consensus       449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~  526 (634)
                      ...+..+...+...|++++|...++.+.+.  .+.+...+..+...|...|++++|++.++++ .. +.+...+..+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            345666666666677777777777666542  1224556666777777777777777777765 22 2346677788888


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  566 (634)
                      +...|++++|...++++++.+|.++..+..++.++...|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888899999999999988888888888888888876653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.65  E-value=8.2e-08  Score=90.69  Aligned_cols=191  Identities=8%  Similarity=-0.084  Sum_probs=126.2

Q ss_pred             chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047120          382 NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLN  457 (634)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~  457 (634)
                      +...+..+...+.+.|++++|+..|++..   ..+...|..+..+|...|++++|+..+++..+.  .|+ ...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            34555666777777777777777777665   336667888888888888888888888888764  454 567888888


Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  536 (634)
                      ++...|++++|...|+.+.+.   .|+. ..+...+....+..+...... .......++......+.. + ..|++++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence            888889999999888887763   2221 111112222222111111111 222233334443333332 2 26899999


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHhcC-CCchHHHHHHHHHHhC
Q 047120          537 EPVAKHLIGMDSSNSSSYVLLSNMFAGL-GMWNDARRVRSMMKER  580 (634)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  580 (634)
                      .+.++++++.+|.+......+...+.+. +++++|.++|.++.+.
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999998887777887777766 7788999999888653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.64  E-value=1.2e-07  Score=77.17  Aligned_cols=96  Identities=8%  Similarity=0.015  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      ..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.+|..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34556666677777777777777765 2233 466777777777777778888888888777777777777777878777


Q ss_pred             CCCchHHHHHHHHHHhCC
Q 047120          564 LGMWNDARRVRSMMKERN  581 (634)
Q Consensus       564 ~g~~~~A~~~~~~~~~~~  581 (634)
                      .|++++|.+.+++..+..
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            888888877777775543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.64  E-value=1.8e-07  Score=90.89  Aligned_cols=94  Identities=9%  Similarity=-0.014  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..|+++++++|.++..+..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            467888999999999999999999887 3344 57789999999999999999999999999999999999999999999


Q ss_pred             cCCCchHH-HHHHHHHH
Q 047120          563 GLGMWNDA-RRVRSMMK  578 (634)
Q Consensus       563 ~~g~~~~A-~~~~~~~~  578 (634)
                      +.|++++| ...+++|.
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998 45666663

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.63  E-value=1.4e-06  Score=88.92  Aligned_cols=349  Identities=10%  Similarity=-0.034  Sum_probs=195.7

Q ss_pred             CC-ChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCC-hHHHHHHH
Q 047120          198 SG-NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGK-MDDAQALF  273 (634)
Q Consensus       198 ~g-~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~  273 (634)
                      .| +++.|..+|+.+...-|.              ++ .+.+..+|++...  |++..|...+.-..+.+. .+....+|
T Consensus         7 ~~~~i~~aR~vyer~l~~~P~--------------~~-~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f   71 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLYMS--------------KD-YRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVY   71 (493)
T ss_dssp             -----CCHHHHHHHHHHHHHT--------------TC-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred             cCcchHHHHHHHHHHHHHCCC--------------CC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            45 366777777776554333              66 9999999999887  888888888887776663 34455555


Q ss_pred             hhCC------CCChhHHHHHHHHHH----HcCChHHHHHHhhhCCCCCh----hhHHHHHHHHHHcCC------------
Q 047120          274 DKMP------KRDVVSWANMIDGYA----KLGRVDIARRLFDEMPKRDV----VACNAMMGGYVRNGY------------  327 (634)
Q Consensus       274 ~~~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~------------  327 (634)
                      +...      ..+...|...+..+.    ..++.+.+.++|++...-..    ..|...... .....            
T Consensus        72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~  150 (493)
T 2uy1_A           72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL  150 (493)
T ss_dssp             HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence            5543      235577777776554    34667888888888765211    123222221 11111            


Q ss_pred             --chHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047120          328 --SMKALEIFDNMQCELYLH-PDDASLVIVLSAIAQL--GH-----IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG  397 (634)
Q Consensus       328 --~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  397 (634)
                        +..|..+++.+...  .. .+...|...+.--...  +-     .+.+..+|++++... +.++.+|...+..+.+.|
T Consensus       151 ~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~  227 (493)
T 2uy1_A          151 PIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG  227 (493)
T ss_dssp             HHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence              22233333333321  00 1222343333322211  11     234566777777643 555777777788888888


Q ss_pred             CHHHHHHHHHhccCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHhccC
Q 047120          398 SIENAIKVFEQIEDG--SVDHWNAMINGLAIHGLGELAFDLLMEMERLS---------IEPD---DITFTGLLNACAHAG  463 (634)
Q Consensus       398 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~---~~~~~~ll~~~~~~g  463 (634)
                      +++.|..+|++....  +...|.    .|....+.++.   ++.+.+.-         ..+.   ...|...+....+.+
T Consensus       228 ~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~  300 (493)
T 2uy1_A          228 QKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR  300 (493)
T ss_dssp             CHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence            888888888765532  222222    22222222222   22222110         0111   234566666666677


Q ss_pred             CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120          464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG-HIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVA  540 (634)
Q Consensus       464 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  540 (634)
                      ..+.|..+|+.+ +..+  .+...|...+..-.+.| +.+.|.++|+..  ..+.++..|...+....+.|+.+.|..++
T Consensus       301 ~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~  377 (493)
T 2uy1_A          301 GLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF  377 (493)
T ss_dssp             CHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            788888888888 3111  23344443333333333 688888888876  22223445566666667788888888888


Q ss_pred             HHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       541 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      +++.    .....|..++..-...|+.+.+.++++++.+
T Consensus       378 er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          378 KRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8872    3455677777777777888888888877754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.62  E-value=6.7e-08  Score=84.21  Aligned_cols=119  Identities=8%  Similarity=0.062  Sum_probs=65.2

Q ss_pred             ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hH
Q 047120          461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSA-CRNYENL--NV  535 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~  535 (634)
                      ..|++++|...++.+.+..  +.+...|..+...|...|++++|...++++ ...| +...+..+... +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            3455555555555554421  223445555566666666666666666554 2222 34455555555 5556665  66


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      |...++++++.+|.++..+..++.+|...|++++|...++++.+..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            6666666666666666666666666666666666666666665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.61  E-value=2.3e-07  Score=73.40  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=82.2

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS--NSSSYVLLSN  559 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~  559 (634)
                      +...+..+...+.+.|++++|...++++ .. +.+...+..+...+...|++++|...++++++..|.  ++..+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            3556677788888888888888888876 22 345677888888889999999999999999999998  8889999999


Q ss_pred             HHhcC-CCchHHHHHHHHHHhCCC
Q 047120          560 MFAGL-GMWNDARRVRSMMKERNL  582 (634)
Q Consensus       560 ~~~~~-g~~~~A~~~~~~~~~~~~  582 (634)
                      ++... |++++|.+.+++..+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhccc
Confidence            99999 999999999998876544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.60  E-value=9e-07  Score=81.40  Aligned_cols=138  Identities=9%  Similarity=-0.094  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDI  494 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~  494 (634)
                      +-.+...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|+.... .. .|.  ...+..+..+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence            344566777888888888888877764  45544555555678888999999998886544 11 111  2357778888


Q ss_pred             HhccCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120          495 LGRAGHIEAARNLIEDM--P-MEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN  559 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  559 (634)
                      +.+.|++++|++.|++.  + ..|.  .........++.+.|+.++|...|+++.+.+|. +..+..|.+
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            99999999999999887  2 2143  346667777889999999999999999999987 666655543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.59  E-value=7.5e-06  Score=77.76  Aligned_cols=159  Identities=12%  Similarity=-0.062  Sum_probs=120.5

Q ss_pred             HHHHhHhcCCHHHHHHHHHhccCC---Chh------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 047120          389 LIDMYSKCGSIENAIKVFEQIEDG---SVD------HWNAMINGLAIHGLGELAFDLLMEMERLSIE-PD----DITFTG  454 (634)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~  454 (634)
                      .+..+...|++++|...+++..+.   +..      .+..+...+...+++++|+..+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            466788889999999999886532   111      3344666777778999999999999874322 22    236889


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHHhc----CcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047120          455 LLNACAHAGLVKEGLLCFELMRRIH----KLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPN-DVIWR  521 (634)
Q Consensus       455 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~  521 (634)
                      +...|...|++++|..+++++.+..    +..+. ..++..++..|.+.|++++|++.+++.       +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999999987421    11222 346888999999999999999998876       12222 56888


Q ss_pred             HHHHHHHhcCC-hhHHHHHHHHHhccC
Q 047120          522 TLLSACRNYEN-LNVGEPVAKHLIGMD  547 (634)
Q Consensus       522 ~l~~~~~~~g~-~~~a~~~~~~~~~~~  547 (634)
                      .+..++...|+ +++|...+++++++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            89999999995 699999999998653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.56  E-value=2.4e-07  Score=77.72  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=86.3

Q ss_pred             CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHH
Q 047120          445 IEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWR  521 (634)
Q Consensus       445 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~  521 (634)
                      +.|+. ..+..+...+.+.|++++|+..|+.+....  +.+...|..+..+|.+.|++++|++.|+++ .+.|+ +..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            45553 477788888899999999999999988741  335777888999999999999999999987 44444 67888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          522 TLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      .+..++...|++++|+..|++++++.|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            899999999999999999999999998754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=1.6e-07  Score=75.72  Aligned_cols=95  Identities=14%  Similarity=0.006  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120          487 HYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL  564 (634)
Q Consensus       487 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  564 (634)
                      .+..+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            4566778888999999999999987 4445 5778888999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhCC
Q 047120          565 GMWNDARRVRSMMKERN  581 (634)
Q Consensus       565 g~~~~A~~~~~~~~~~~  581 (634)
                      |++++|+..++++.+..
T Consensus        99 g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999987653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.55  E-value=1.1e-06  Score=78.15  Aligned_cols=152  Identities=11%  Similarity=-0.008  Sum_probs=82.5

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cccc-ChhHHHHHHHHHhccCCHH
Q 047120          427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEP-ELQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       427 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~  502 (634)
                      .|++++|.+.++.+... .......+..+...+...|++++|...++++....   +..+ ....+..+...|...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            45555555533333221 11123355555555556666666666555554311   1111 2334556666666666666


Q ss_pred             HHHHHHHhC-CC---CC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC--CCC----chHHHHHHHHhcCCCc
Q 047120          503 AARNLIEDM-PM---EP-N----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS--SNS----SSYVLLSNMFAGLGMW  567 (634)
Q Consensus       503 ~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~  567 (634)
                      +|.+.+++. ..   .+ +    ...+..+...+...|++++|...++++++..+  .++    ..+..++.++...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            666666554 10   11 2    23456666667777777777777777765532  111    1346777777777888


Q ss_pred             hHHHHHHHHHHh
Q 047120          568 NDARRVRSMMKE  579 (634)
Q Consensus       568 ~~A~~~~~~~~~  579 (634)
                      ++|.+.+++..+
T Consensus       164 ~~A~~~~~~al~  175 (203)
T 3gw4_A          164 LEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            887777776654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.54  E-value=2.8e-07  Score=79.04  Aligned_cols=110  Identities=12%  Similarity=0.023  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 047120          449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSA  526 (634)
Q Consensus       449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~  526 (634)
                      ...+..+...+...|++++|+..|+.+.+..  +.+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4578888889999999999999999988742  335777888999999999999999999887 44444 7788889999


Q ss_pred             HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      +...|++++|+..++++++++|.++..+...+..
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            9999999999999999999999998866655543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.54  E-value=4.5e-07  Score=74.89  Aligned_cols=97  Identities=8%  Similarity=-0.007  Sum_probs=65.6

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      +...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            3455666666666666666666666665 2223 3556666677777777777777777777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHHHhC
Q 047120          562 AGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       562 ~~~g~~~~A~~~~~~~~~~  580 (634)
                      ...|++++|+..++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHH
Confidence            7777777777777776544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.53  E-value=1.6e-06  Score=82.38  Aligned_cols=161  Identities=11%  Similarity=-0.053  Sum_probs=115.2

Q ss_pred             HHHHHHHhHhcCCHHHHHHHHHhccC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 047120          386 GVALIDMYSKCGSIENAIKVFEQIED---GSV------DHWNAMINGLAIHGLGELAFDLLMEMERLSI---EPD--DIT  451 (634)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~  451 (634)
                      +...+..+...|++++|.+.+.+..+   ...      ..+..+...+...|++++|+..+++..+...   .+.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            33455667777888888777765431   111      2244456667778899999999988875321   122  347


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-------HH
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-------DV  518 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~  518 (634)
                      ++.+...|...|++++|..+++++.+.....|+     ..++..++..|.+.|++++|++.+++. .+.++       ..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            888888999999999999999988742111222     257888999999999999999998876 11111       56


Q ss_pred             HHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 047120          519 IWRTLLSACRNYENLNVG-EPVAKHLIGM  546 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~  546 (634)
                      +|..+...+...|++++| ...+++++..
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            788889999999999999 8888888754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.51  E-value=1.8e-07  Score=78.56  Aligned_cols=116  Identities=9%  Similarity=-0.010  Sum_probs=89.4

Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC
Q 047120          437 LMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME  514 (634)
Q Consensus       437 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  514 (634)
                      ++++..  +.|+ ...+..+...+...|++++|...|+.+....  +.+...|..+..+|.+.|++++|++.|+++ ...
T Consensus        10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            444443  3454 3466777778888899999999998887631  335677888888999999999999999887 333


Q ss_pred             C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120          515 P-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       515 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  556 (634)
                      | +...+..+..++...|++++|+..+++++++.|.+|.....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence            4 46788888889999999999999999999999988776443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=1.2e-06  Score=69.80  Aligned_cols=110  Identities=12%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC  527 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  527 (634)
                      ..+..+...+...|++++|...++.+....  +.+...+..++..+.+.|++++|...++++ ...| +...+..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345555556666666666666666665521  224455666666666677777777666665 2223 355666777777


Q ss_pred             HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ...|++++|...++++++.+|.++..+..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            7777777777777777777777777666666553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.50  E-value=6.4e-07  Score=73.36  Aligned_cols=99  Identities=7%  Similarity=0.036  Sum_probs=89.4

Q ss_pred             cChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          483 PELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       483 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      .+...+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|.++..+..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34667888999999999999999999987 4445 577889999999999999999999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHhCC
Q 047120          561 FAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       561 ~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      |.+.|++++|.+.+++..+..
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999987653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.50  E-value=3.7e-07  Score=74.31  Aligned_cols=96  Identities=6%  Similarity=-0.022  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-------hHH
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS-------SYV  555 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~  555 (634)
                      ...+..++..+.+.|++++|++.|+++ .+.|+ ...|..+..+|...|++++|+..++++++++|.++.       +|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            345667888888889999999888887 44444 678888888999999999999999999998876654       567


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          556 LLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       556 ~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .++.++...|++++|++.+++..+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7888888999999999999887653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.48  E-value=8.8e-07  Score=78.89  Aligned_cols=153  Identities=11%  Similarity=-0.025  Sum_probs=91.7

Q ss_pred             hcCCHHHHHH---HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHH
Q 047120          395 KCGSIENAIK---VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER----LSIEPD-DITFTGLLNACAHAGLVK  466 (634)
Q Consensus       395 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~  466 (634)
                      ..|++++|.+   .+..........+..+...+...|++++|...+++..+    .+..|. ..++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            3455566655   33332222344566666666677777777776666554    111222 336666777777778888


Q ss_pred             HHHHHHHHhHHhcCccc-----ChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCh
Q 047120          467 EGLLCFELMRRIHKLEP-----ELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN----DVIWRTLLSACRNYENL  533 (634)
Q Consensus       467 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~  533 (634)
                      +|...+++......-.+     ....+..+...+...|++++|.+.+++.    ...++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            88777777665311111     1334667777778888888887777665    11122    22456677778888888


Q ss_pred             hHHHHHHHHHhccC
Q 047120          534 NVGEPVAKHLIGMD  547 (634)
Q Consensus       534 ~~a~~~~~~~~~~~  547 (634)
                      ++|...++++++..
T Consensus       164 ~~A~~~~~~al~~~  177 (203)
T 3gw4_A          164 LEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=7.5e-07  Score=71.07  Aligned_cols=98  Identities=10%  Similarity=0.094  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...+..++..+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            456778889999999999999999987 333 467788889999999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHhCCC
Q 047120          563 GLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..|++++|.+.+++..+.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT
T ss_pred             HHhhHHHHHHHHHHHHHcCC
Confidence            99999999999999976643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.47  E-value=6.4e-07  Score=79.55  Aligned_cols=95  Identities=8%  Similarity=-0.064  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      ..|..+..+|.+.|++++|+..++++ ... .+...+..+..++...|++++|+..++++++.+|.++..+..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56777888888999999999888887 333 4577888899999999999999999999999999999999999999998


Q ss_pred             CCCchHHH-HHHHHHHhC
Q 047120          564 LGMWNDAR-RVRSMMKER  580 (634)
Q Consensus       564 ~g~~~~A~-~~~~~~~~~  580 (634)
                      .|+.+++. ..+++|-..
T Consensus       169 ~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            88877776 555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.46  E-value=7.8e-07  Score=71.77  Aligned_cols=97  Identities=13%  Similarity=0.185  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...+..++..+.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            567888999999999999999999987 22 3457788899999999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHhCC
Q 047120          563 GLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       563 ~~g~~~~A~~~~~~~~~~~  581 (634)
                      ..|++++|...++++.+..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhC
Confidence            9999999999999987653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=1e-06  Score=73.68  Aligned_cols=110  Identities=8%  Similarity=-0.053  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047120          449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRT  522 (634)
Q Consensus       449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  522 (634)
                      ...+..+...+...|++++|...|+.+.+.   .|+    ...+..+...|...|++++|++.+++. ...| +...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            345555555555666666666666655441   233    344555555555555555555555554 2222 3445555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      +..++...|++++|...++++++.+|.++..+..+..+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            555555555555555555555555555555555444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.45  E-value=4.2e-07  Score=75.30  Aligned_cols=63  Identities=13%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCCchH----HHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGM-------DSSNSSSY----VLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..|..+..++.+.|++++|+..+++++++       +|+++..|    +..+.++...|++++|+..|++..+.
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            37788888888888888888888888888       88888888    88899999999999999998888654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.44  E-value=6.2e-07  Score=74.68  Aligned_cols=109  Identities=10%  Similarity=-0.037  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC  527 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  527 (634)
                      ..+..+...+...|++++|...|+.+....  +.+...|..+..+|.+.|++++|+..++++ ...| +...+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            355666677788888888888888887631  335667788888888889999998888887 3334 456778888889


Q ss_pred             HhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      ...|++++|+..++++++..|.++........+
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999888765554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.43  E-value=1.2e-06  Score=76.21  Aligned_cols=128  Identities=12%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH-HhccCCH--
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI-LGRAGHI--  501 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  501 (634)
                      ...|++++|+..+++..+.. ..+...+..+...+...|++++|...++.+.+..  +.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34577888888888877642 2346788888889999999999999999887742  2356677788888 7788998  


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120          502 EAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       502 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                      ++|...++++ ...| +...+..+...+...|++++|...++++++..|.++....
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence            9999999887 3344 4678888888999999999999999999999998876443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.43  E-value=1.2e-06  Score=71.08  Aligned_cols=111  Identities=9%  Similarity=-0.090  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC  527 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  527 (634)
                      ..+..+...+.+.|++++|+..|+.+.+..  +.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            355666677777888888888888777631  234667777888888888888888888776 3344 466788888888


Q ss_pred             HhcCChhHHHHHHHHHhccC------CCCCchHHHHHHHHh
Q 047120          528 RNYENLNVGEPVAKHLIGMD------SSNSSSYVLLSNMFA  562 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~  562 (634)
                      ...|++++|...++++++.+      |.++..+..+..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            88999999999999999888      777777776666543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=2.9e-06  Score=70.91  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=66.3

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      +...+..+...+...|++++|.+.+++. ...|+    ...|..+...+...|++++|+..++++++..|.++..+..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            4555666666777777777777777665 44555    456666666677777777777777777777777777777777


Q ss_pred             HHHhcCCCchHHHHHHHHHHhC
Q 047120          559 NMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .+|...|++++|.+.+++..+.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Confidence            7777777777777777766554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.41  E-value=1.8e-06  Score=73.88  Aligned_cols=92  Identities=13%  Similarity=0.036  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI  494 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (634)
                      .|..+...+...|++++|+..|++..+.  .| +...|..+..++...|++++|+..++.+.+..  +.+...|..+..+
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~   88 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence            4445555555555555555555555543  23 23445555555555555555555555554421  1224445555555


Q ss_pred             HhccCCHHHHHHHHHhC
Q 047120          495 LGRAGHIEAARNLIEDM  511 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~  511 (634)
                      |.+.|++++|.+.|+++
T Consensus        89 ~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHH
Confidence            55555555555555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.40  E-value=1.1e-06  Score=71.61  Aligned_cols=99  Identities=15%  Similarity=0.097  Sum_probs=88.6

Q ss_pred             cChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          483 PELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       483 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      .+...+..++..+...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            34567888899999999999999999987 33 34677888999999999999999999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHhCC
Q 047120          561 FAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       561 ~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +...|++++|.+.+++..+..
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHhCCHHHHHHHHHHHHhcC
Confidence            999999999999999987654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.35  E-value=0.00024  Score=67.63  Aligned_cols=174  Identities=9%  Similarity=0.038  Sum_probs=103.4

Q ss_pred             HHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc-
Q 047120          320 GGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC-  396 (634)
Q Consensus       320 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  396 (634)
                      ....+.+..++|++++..+..   +.|+. ..|+.--..+...| .+++++.+++.++... +-+..+++.-..++... 
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~  137 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS  137 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence            333445556788888888884   35654 44555555566666 4788888888777654 33556666655555555 


Q ss_pred             C-CHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047120          397 G-SIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGE--------LAFDLLMEMERLSIEPDDITFTGLLNACAHAGL  464 (634)
Q Consensus       397 ~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  464 (634)
                      + ++++++++++++.+.   +..+|+--.-.+.+.|.++        ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus       138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence            5 677777777777644   3445554444444444444        7777777777642 2245566666666666554


Q ss_pred             -------HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          465 -------VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       465 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                             ++++++.++.+...  .+-|...|+.+-..+.+.|+
T Consensus       217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence                   56666666666552  12334456555555555444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.35  E-value=9.4e-07  Score=72.04  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=41.7

Q ss_pred             HHHHhccCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHHHHhc
Q 047120          492 VDILGRAGHIEAARNLIEDM-PMEPN-D---VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSNMFAG  563 (634)
Q Consensus       492 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~  563 (634)
                      ...+.+.|++++|.+.++++ ...|+ .   ..+..+..++...|++++|...++++++..|.+   +..+..++.+|..
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            33444444455544444443 11122 1   244444444555555555555555555555554   3445555555555


Q ss_pred             CCCchHHHHHHHHHHh
Q 047120          564 LGMWNDARRVRSMMKE  579 (634)
Q Consensus       564 ~g~~~~A~~~~~~~~~  579 (634)
                      .|++++|...++++.+
T Consensus        89 ~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           89 EGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.35  E-value=7.7e-06  Score=69.83  Aligned_cols=127  Identities=11%  Similarity=-0.040  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL  495 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  495 (634)
                      .|..+...+...|++++|...|++..+.. ..+...+..+..++...|++++|...++.+.+..  +.+...+..++.++
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence            34445555555666666666666655431 1234455556666666666666666666665521  22344556666666


Q ss_pred             hccCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCChhHHHHHHHHHhc
Q 047120          496 GRAGHIEAARNLIEDM-PMEP-NDVIWR--TLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       496 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      .+.|++++|.+.++++ ...| +...+.  ..+..+...|++++|...+++..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            6666666666666655 2222 233332  223335556666676666666543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.34  E-value=7e-05  Score=71.33  Aligned_cols=216  Identities=11%  Similarity=0.066  Sum_probs=155.4

Q ss_pred             HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHc-C-ChHH
Q 047120          359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG-SIENAIKVFEQIED---GSVDHWNAMINGLAIH-G-LGEL  432 (634)
Q Consensus       359 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~  432 (634)
                      ...+..++|+.+++.++... +-+..+++.--.++...| .+++++++++.+..   ++..+|+.-...+... + ++++
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence            34455678899999888865 345566777777777788 59999999998873   4666787777777776 7 8999


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC---
Q 047120          433 AFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVK--------EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH---  500 (634)
Q Consensus       433 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  500 (634)
                      ++++++++.+.  .| +...|+.-...+.+.|.++        ++++.++++.+..  +-|...|+.....+.+.++   
T Consensus       144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcccccc
Confidence            99999999975  44 4557776666665555555        8999999888732  3456778888888888876   


Q ss_pred             ----HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccC------C
Q 047120          501 ----IEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENL--------------------NVGEPVAKHLIGMD------S  548 (634)
Q Consensus       501 ----~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p  548 (634)
                          ++++++.++++ . .+-|...|+.+-..+.+.|..                    .........+....      +
T Consensus       220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence                78899998877 3 344577888877777766654                    23333333333322      3


Q ss_pred             CCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       549 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .++.++..|+++|...|+.++|.++++.+.+
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            5666888999999999999999999999863

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.32  E-value=3.9e-06  Score=85.15  Aligned_cols=94  Identities=10%  Similarity=0.019  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|+..|+++++++|.++.++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467888899999999999999999887 3334 57789999999999999999999999999999999999999999999


Q ss_pred             cCCCchHHHH-HHHHHH
Q 047120          563 GLGMWNDARR-VRSMMK  578 (634)
Q Consensus       563 ~~g~~~~A~~-~~~~~~  578 (634)
                      +.|+++++.+ .+++|-
T Consensus       397 ~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999988764 455553

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.31  E-value=3.6e-07  Score=73.18  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      .+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|++.+++..
T Consensus        29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444444445555555555555555555555555555555555555555555555555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.29  E-value=0.00012  Score=69.29  Aligned_cols=232  Identities=9%  Similarity=-0.005  Sum_probs=130.9

Q ss_pred             HHcCCch-HHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120          323 VRNGYSM-KALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGH----------IDKGVAIHRYLEKDQFSLNGKHGVALI  390 (634)
Q Consensus       323 ~~~g~~~-~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~  390 (634)
                      .+.|.++ +|++++..+.   .+.|+..| |+.--..+...+.          ++++..+++.+.... +-+..+|+.-.
T Consensus        40 ~~~~e~s~eaL~~t~~~L---~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~  115 (331)
T 3dss_A           40 RQAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC  115 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            3455554 7788888887   45665533 3332222222221          456666777666643 34556666666


Q ss_pred             HHhHhcC--CHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 047120          391 DMYSKCG--SIENAIKVFEQIE---DGSVDHWNAMINGLAIHGL-GELAFDLLMEMERLSIEPDDITFTGLLNACAHA--  462 (634)
Q Consensus       391 ~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--  462 (634)
                      .++.+.+  .+++++.+++++.   ..+..+|+.-.-.+...|. ++++++.++++.+.. .-|...|+.....+...  
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence            6666666  3777777777766   3355566666666666676 477888887777652 22344555544444333  


Q ss_pred             ------------CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc-----------CCHHHHHHHHHhC-CCCCCH-
Q 047120          463 ------------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA-----------GHIEAARNLIEDM-PMEPND-  517 (634)
Q Consensus       463 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~-  517 (634)
                                  +.++++++.+..+...  .+-|...|+.+-..+.+.           +.++++++.++++ ...||. 
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~  272 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK  272 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence                        3466777777776652  123445555554444444           3456666666666 344543 


Q ss_pred             HHHHHHHH---HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          518 VIWRTLLS---ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       518 ~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ..+.+++.   +....|..++....++++++++|....-|..+..-+
T Consensus       273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            22222221   112355666777777777777776666666655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=8.7e-06  Score=82.25  Aligned_cols=162  Identities=7%  Similarity=-0.085  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cccc-ChhH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD----ITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEP-ELQH  487 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~  487 (634)
                      +..++..|...|++++|.+.+..+...- ..++.    ...+.+...+...|+++.|..+++......   +..+ -..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            4556666677777777776666654321 01111    123333344555677777777777655411   1111 1345


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CC----Cc
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-----P--MEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS---SN----SS  552 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~  552 (634)
                      +..++..|...|++++|..+++++     +  .++. ..++..++..|...|++++|..++++++...+   .+    ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            667778888888888888877765     1  1222 33667777778888888888888888776542   21    12


Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          553 SYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       553 ~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      .+..++.++...|++++|...+.+..
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45566777778888888887776664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.28  E-value=3.1e-06  Score=69.77  Aligned_cols=100  Identities=8%  Similarity=-0.094  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047120          448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLS  525 (634)
Q Consensus       448 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  525 (634)
                      +...+..+...+...|++++|...|+.+....  +.+...|..+..+|...|++++|...++++ ...| +...|..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            45677777778888888888888888777631  234667778888888888888888888876 3334 4668888888


Q ss_pred             HHHhcCChhHHHHHHHHHhccCCC
Q 047120          526 ACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       526 ~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      ++...|++++|+..++++++..|.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            888899999999999999888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.28  E-value=1.7e-06  Score=73.89  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc-----ccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKL-----EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL  524 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~  524 (634)
                      ..+......+.+.|++++|+..|..+......     .|+...+                    ..+ .+.+...|..+.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~nla   70 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-DRKNIPLYANMS   70 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-HHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-HHHHHHHHHHHH
Confidence            35666667777777777777777776652000     0000000                    000 001123444445


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .++.+.|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus        71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555555555555555555555555433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.28  E-value=1.8e-06  Score=73.37  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN----DV  518 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~  518 (634)
                      ++..+...+...|++++|...++++.....-.++    ...+..+...+...|++++|.+.+++.    +..++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444444555555555555555554432110111    124555666666666666666666654    10111    33


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSS------NSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+..+...+...|++++|...++++++..+.      .+..+..++.+|...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5666667777788888888888887765321      134677788888888888888888887754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.26  E-value=1.9e-06  Score=70.19  Aligned_cols=108  Identities=7%  Similarity=0.019  Sum_probs=58.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM----EPN----DVIWRT  522 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~  522 (634)
                      +..+...+...|++++|...++.+....  +.+...+..++..|...|++++|...++++ ..    .++    ..++..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3444444445555555555555544421  223344445555555555555555555544 11    112    445666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      +...+...|++++|...++++++..| ++.....+..+..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            66677777777777777777777766 4555555555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.26  E-value=2.1e-06  Score=69.95  Aligned_cols=97  Identities=9%  Similarity=0.030  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHH
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-------SSSYV  555 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~  555 (634)
                      ...+..++..+...|++++|...++++ . .+.+...+..+...+...|++++|...++++++..|.+       +..+.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            356778889999999999999999987 3 23467788889999999999999999999999998766       77899


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          556 LLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       556 ~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .++.+|...|++++|.+.++++.+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            99999999999999999999997753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.24  E-value=2.6e-06  Score=82.68  Aligned_cols=147  Identities=10%  Similarity=-0.043  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120          415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI  494 (634)
Q Consensus       415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (634)
                      ..+..+...+.+.|++++|+..|++....  .|+...       +...++.+++...+           ....|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence            35666667777777788888877777653  444331       22333333333221           11367788889


Q ss_pred             HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh-cCCCchHHH
Q 047120          495 LGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA-GLGMWNDAR  571 (634)
Q Consensus       495 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~  571 (634)
                      |.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|.++..+..+..+.. ..+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 3344 57788889999999999999999999999999999999988888844 556777888


Q ss_pred             HHHHHHHhCC
Q 047120          572 RVRSMMKERN  581 (634)
Q Consensus       572 ~~~~~~~~~~  581 (634)
                      .++++|.+..
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888886543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.24  E-value=9.1e-06  Score=66.02  Aligned_cols=104  Identities=8%  Similarity=0.006  Sum_probs=70.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHHhcCcccC-h---hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047120          454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPE-L---QHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLL  524 (634)
Q Consensus       454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  524 (634)
                      .+...+...|++++|...++.+.+.   .|+ .   ..+..+..++.+.|++++|...++++ ...|+    ...+..+.
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            3445566677777777777776653   222 2   35666777777778888877777766 22333    45677777


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      .++...|++++|...++++++..|.++........+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            788888888889888888888888776655544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.24  E-value=7.2e-06  Score=64.47  Aligned_cols=100  Identities=14%  Similarity=-0.010  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP---NDVIWRTLLS  525 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~  525 (634)
                      ..+..+...+...|++++|...++.+.+..  +.+...+..+...+...|++++|.+.++++ ...|   +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            355666677777788888888887776631  234566777888888888888888888776 3334   4677888888


Q ss_pred             HHHhc-CChhHHHHHHHHHhccCCCCC
Q 047120          526 ACRNY-ENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       526 ~~~~~-g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      .+... |++++|.+.++++++..|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            88888 999999999999988888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.24  E-value=5e-06  Score=78.34  Aligned_cols=113  Identities=7%  Similarity=-0.127  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 047120          448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLS  525 (634)
Q Consensus       448 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~  525 (634)
                      +...+..+...+...|++++|...|+.+.+..  +.+...|..+..+|.+.|++++|++.++++ ...|+ ...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678888889999999999999999988741  235777888999999999999999999887 55554 678888888


Q ss_pred             HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ++...|++++|+..++++++++|.++..+...+....
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~  117 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence            9999999999999999999999877666554444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.24  E-value=2.9e-06  Score=68.92  Aligned_cols=95  Identities=7%  Similarity=0.034  Sum_probs=47.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC----CC----HHHHHH
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME----PN----DVIWRT  522 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~~  522 (634)
                      +..+...+.+.|++++|+..|+++.+..  +.+...|..+..+|.+.|++++|++.+++. .+.    ++    ..+|..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            3344444444455555555554444321  112334444455555555555555544443 111    11    124555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      +..++...|++++|++.|+++++..|
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            66666777777777777777776655

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.23  E-value=1.8e-06  Score=88.07  Aligned_cols=116  Identities=5%  Similarity=-0.052  Sum_probs=68.5

Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  535 (634)
                      .+.+.|++++|.+.++++.+..  +.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3445566666666666665521  223555666666666666666666666665 3333 35566666666666677777


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHH--HhcCCCchHHHHHHH
Q 047120          536 GEPVAKHLIGMDSSNSSSYVLLSNM--FAGLGMWNDARRVRS  575 (634)
Q Consensus       536 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~  575 (634)
                      |++.++++++.+|.++..+..++.+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777776666666666666666  666666666666665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.23  E-value=5.4e-06  Score=81.33  Aligned_cols=90  Identities=7%  Similarity=-0.006  Sum_probs=79.3

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      +...|..+..+|.+.|++++|++.++++ ...|+ ...|..+..+|...|++++|+..++++++++|.++..+..++.++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3567888999999999999999999987 55554 778889999999999999999999999999999999999999999


Q ss_pred             hcCCCchHHHHH
Q 047120          562 AGLGMWNDARRV  573 (634)
Q Consensus       562 ~~~g~~~~A~~~  573 (634)
                      ...++.+++.+.
T Consensus       352 ~~~~~~~~a~k~  363 (370)
T 1ihg_A          352 QKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            988888776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.22  E-value=8e-07  Score=78.95  Aligned_cols=97  Identities=10%  Similarity=-0.020  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-N----------------DVIWRTLLSACRNYENLNVGEPVAKHLIGM  546 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  546 (634)
                      ...+..+...+.+.|++++|++.|+++ ...| +                ...|..+..++...|++++|+..++++++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            344566677777777777777777765 2112 1                267888888999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       547 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +|.++..+..++.+|...|++++|.+.+++..+..
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999987653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.21  E-value=4e-06  Score=69.40  Aligned_cols=109  Identities=12%  Similarity=0.038  Sum_probs=76.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCccc----------ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-------
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEP----------ELQHYGCMVDILGRAGHIEAARNLIEDM-PM-------  513 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------  513 (634)
                      +......+.+.|++++|+..|+++.+...-.|          +...|..+..++.+.|++++|+..+++. .+       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            33444455556666666666666555211100          1226777788888888888888777766 44       


Q ss_pred             CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120          514 EPN-DVIW----RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM  560 (634)
Q Consensus       514 ~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  560 (634)
                      .|+ ...|    .....++...|++++|+..|++++++.|.+...+..+..+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            777 4578    8899999999999999999999999999988776665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.18  E-value=6.2e-06  Score=66.22  Aligned_cols=98  Identities=10%  Similarity=0.006  Sum_probs=66.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047120          452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRN  529 (634)
Q Consensus       452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  529 (634)
                      +..+...+.+.|++++|+..++.+.+..  +.+...|..+..++.+.|++++|+..++++ ...| +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445556677777888887777776631  234666777777788888888888888776 3344 45677778888888


Q ss_pred             cCChhHHHHHHHHHhccCCCCC
Q 047120          530 YENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       530 ~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      .|++++|+..++++++.+|.++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            8888888888888888887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.16  E-value=1.6e-05  Score=76.97  Aligned_cols=128  Identities=7%  Similarity=-0.074  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD----------------DITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       414 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      ...|..+...|.+.|++++|+..|++..+.  .|+                ...|..+..++.+.|++++|+..++.+.+
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445666777777778888888888777764  333                36788888888888999999998888877


Q ss_pred             hcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHhc
Q 047120          478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVG-EPVAKHLIG  545 (634)
Q Consensus       478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~  545 (634)
                      ..  +.+...|..+..+|...|++++|+..|+++ .+.| +...+..+...+...|+.++| ...+++++.
T Consensus       225 ~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          225 LD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            31  335677888888899999999999888887 3444 466778888888888888888 446666653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.16  E-value=1.6e-06  Score=69.24  Aligned_cols=93  Identities=12%  Similarity=0.082  Sum_probs=66.1

Q ss_pred             cCCHHHHHHHHHHhHHhcC--cccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 047120          462 AGLVKEGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       462 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      .|++++|+..|+++.+. +  -+.+...+..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            46777777777777652 1  1223556777888888888888888888877 3334 4667778888888889999999


Q ss_pred             HHHHHHhccCCCCCchHH
Q 047120          538 PVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~  555 (634)
                      ..++++++..|.++....
T Consensus        82 ~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHH
Confidence            999999888888776544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=6.4e-05  Score=75.80  Aligned_cols=95  Identities=5%  Similarity=-0.171  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-----h
Q 047120          416 HWNAMINGLAIHGLGELAFDLLMEMERL--SI--EPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-----L  485 (634)
Q Consensus       416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~  485 (634)
                      ++..+...|...|++++|..++++....  +.  .|. ...+..++..|...|++++|..+++.+.....-.++     .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            4455555566666666666665554432  11  111 235555666666666666666666655432111111     2


Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHh
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIED  510 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~  510 (634)
                      ..+..++..+...|++++|...+.+
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3345555556666666666555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.12  E-value=5.1e-06  Score=70.87  Aligned_cols=123  Identities=14%  Similarity=0.049  Sum_probs=89.6

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH
Q 047120          414 VDHWNAMINGLAIHGLGELAFDLLMEMERLS------IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH  487 (634)
Q Consensus       414 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  487 (634)
                      ...+......+.+.|++++|+..|.+....-      -.|+...                    +..+.     +.+...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~--------------------~~~~~-----~~~~~~   65 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE--------------------WVELD-----RKNIPL   65 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH--------------------HHHHH-----HTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH--------------------HHHHH-----HHHHHH
Confidence            4567888899999999999999999987630      0111110                    01111     223556


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC-chHHHHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS-SSYVLLSNMF  561 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~  561 (634)
                      |..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|...++++++++|.++ .....+..+.
T Consensus        66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            778888888888888888888877 3344 467888899999999999999999999999999887 4455555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.12  E-value=0.00044  Score=65.51  Aligned_cols=219  Identities=10%  Similarity=0.018  Sum_probs=152.5

Q ss_pred             ccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHHhcc---CCChhHHHHHHHHHH
Q 047120          360 QLGHI-DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS----------IENAIKVFEQIE---DGSVDHWNAMINGLA  425 (634)
Q Consensus       360 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~  425 (634)
                      +.|.+ ++|+.....++..+ +-+..+++.--.++...+.          +++++.+++.+.   ..+..+|+.-...+.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            44444 47888888888754 2233445443333333332          678888888776   456778888777777


Q ss_pred             HcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc----
Q 047120          426 IHGL--GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL-VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA----  498 (634)
Q Consensus       426 ~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  498 (634)
                      ..++  +++++++++++.+.. .-|...|+.-...+...|. +++++..++.+.+..  +-|...|+.....+.+.    
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence            8774  899999999999863 2256678777777777787 689999999998742  34555666666555544    


Q ss_pred             ----------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCCchHH
Q 047120          499 ----------GHIEAARNLIEDM--PMEPNDVIWRTLLSACRNY-----------ENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       499 ----------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                                +.++++++.++++  ..+-|...|+.+-..+.+.           +.++++++.++++++..|++...+.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence                      4578899998887  3344577887776666554           4578999999999999999855544


Q ss_pred             HHHHH---HhcCCCchHHHHHHHHHHhCCC
Q 047120          556 LLSNM---FAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       556 ~l~~~---~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .++..   ....|..++....+.++.+.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp  306 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAVDP  306 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence            44433   2246778889999999876543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.11  E-value=9.1e-07  Score=69.82  Aligned_cols=93  Identities=12%  Similarity=0.024  Sum_probs=75.0

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYV  555 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  555 (634)
                      +...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++.+|.+      +..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4456777888888889999999888887 3333 57788888889999999999999999999999988      67788


Q ss_pred             HHHHHHhcCCCchHHHHHHHH
Q 047120          556 LLSNMFAGLGMWNDARRVRSM  576 (634)
Q Consensus       556 ~l~~~~~~~g~~~~A~~~~~~  576 (634)
                      .++.++...|++++|.+.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888887776655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.11  E-value=9.4e-06  Score=68.80  Aligned_cols=131  Identities=13%  Similarity=0.009  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhH
Q 047120          417 WNAMINGLAIHGLGELAFDLLMEMERLSIE-PD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQH  487 (634)
Q Consensus       417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~  487 (634)
                      +..+...+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...++.+.....-.++    ...
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            444555555555555555555554432100 11    135556666666777777777777665542111111    344


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM----PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  547 (634)
                      +..+...+...|++++|.+.+++.    ....+    ..++..+...+...|++++|...++++++..
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            666777777777777777777665    10111    3456677777888888888888888887654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.07  E-value=2.6e-05  Score=79.41  Aligned_cols=113  Identities=12%  Similarity=-0.050  Sum_probs=50.4

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA  503 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  503 (634)
                      .+.|++++|++.+++..+.  .|+ ...|..+..++.+.|++++|+..++++.+.  .+.+...|..+..+|.+.|++++
T Consensus        17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            3444555555555554443  232 345555555555555555555555555442  11223445555555555555555


Q ss_pred             HHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCChhHHHHHHH
Q 047120          504 ARNLIEDM-PMEPN-DVIWRTLLSA--CRNYENLNVGEPVAK  541 (634)
Q Consensus       504 A~~~~~~~-~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~  541 (634)
                      |++.++++ ...|+ ...+..+..+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555554 11221 2223333322  455556666666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.06  E-value=2.8e-05  Score=78.65  Aligned_cols=124  Identities=13%  Similarity=0.081  Sum_probs=95.4

Q ss_pred             HhccCCHHHHHHHHHHhHHhcC--c---ccC-hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHK--L---EPE-LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEPN-DVIWRT  522 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~  522 (634)
                      +...|++++|+.+++++.+...  +   .|+ ..+++.|+.+|...|++++|+.+++++         +..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4567888888888877665221  1   222 456888999999999999998888775         22344 347889


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhcc-----CCCCCch---HHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGM-----DSSNSSS---YVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      |...|...|++++|+.++++++++     +|+.|.+   ...+..++..+|++++|..++.++++.-.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~  466 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999864     5777664   45777888899999999999999987543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.05  E-value=1.4e-05  Score=61.63  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .+...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|++.+++..+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            356788888999999999999999999999999999999999999999999999999999988654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.03  E-value=0.00016  Score=74.94  Aligned_cols=167  Identities=11%  Similarity=0.029  Sum_probs=130.3

Q ss_pred             HHHHHHHHHhcc---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC-
Q 047120          399 IENAIKVFEQIE---DGSVDHWNAMINGLAIHGL----------GELAFDLLMEMERLSIEPD-DITFTGLLNACAHAG-  463 (634)
Q Consensus       399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g-  463 (634)
                      .++|++.++++.   ..+..+|+.-...+...|+          ++++++.++++.+.  .|. ..+|..-..++.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence            356677777665   2344566666666666666          89999999999875  454 568888888888888 


Q ss_pred             -CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 047120          464 -LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG-HIEAARNLIEDM-PMEP-NDVIWRTLLSACRNY---------  530 (634)
Q Consensus       464 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------  530 (634)
                       ++++++..++++.+..  +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence             7799999999998842  345677887778888888 899999999988 4444 467888777776552         


Q ss_pred             -----CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchH
Q 047120          531 -----ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND  569 (634)
Q Consensus       531 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  569 (634)
                           +.++++.+.++++++.+|.+..+|..+..++.+.|+.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                 567999999999999999999999999999999988655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.97  E-value=1.7e-05  Score=76.81  Aligned_cols=153  Identities=11%  Similarity=0.032  Sum_probs=82.2

Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA  462 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  462 (634)
                      ...+..+...+.+.|++++|...|++....++...     .+...++.+++...+.          ...|..+..++.+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~  243 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence            45567788889999999999999998763222211     1122233333332221          13778888899999


Q ss_pred             CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCChhHHHHH
Q 047120          463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND-VIWRTLLSA-CRNYENLNVGEPV  539 (634)
Q Consensus       463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~  539 (634)
                      |++++|+..++.+.+..  +.+...|..+..+|...|++++|...|+++ .+.|+. ..+..+... ....+..+.+...
T Consensus       244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988731  335678889999999999999999999998 566654 345555544 3456778888999


Q ss_pred             HHHHhccCCCCCc
Q 047120          540 AKHLIGMDSSNSS  552 (634)
Q Consensus       540 ~~~~~~~~p~~~~  552 (634)
                      |+++++..|.++.
T Consensus       322 ~~~~l~~~p~~~~  334 (338)
T 2if4_A          322 YKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------
T ss_pred             HHHhhCCCCCCCC
Confidence            9999998887653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.97  E-value=1.9e-05  Score=59.34  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          485 LQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ...+..+...+.+.|++++|++.+++. ... .+...+..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            455667777788888888888888776 223 346677888888888999999999999999999988888888888876


Q ss_pred             cCC
Q 047120          563 GLG  565 (634)
Q Consensus       563 ~~g  565 (634)
                      +.|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.90  E-value=3.4e-05  Score=61.17  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          504 ARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       504 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      |++.++++ ...| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44455544 3333 45677777777777888888888888888888877777888888888888888888888777554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.88  E-value=2.2e-05  Score=79.61  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..|+++.+...
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            468888999999999999999999999999999999999999999999999999999999987654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.87  E-value=2.8e-05  Score=76.19  Aligned_cols=113  Identities=10%  Similarity=0.024  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP-NDVIWRTLLSACR  528 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~  528 (634)
                      ..+..+...+.+.|++++|+..|+++.+..   +...          .....+++.      ...| +..+|..+..++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence            345556666666677777777666665411   1000          000111111      1223 3568888999999


Q ss_pred             hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      +.|++++|+..++++++.+|.++.+|..++.+|...|++++|++.++++.+..
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999997654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.85  E-value=6.9e-06  Score=67.84  Aligned_cols=85  Identities=8%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          498 AGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYEN----------LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       498 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      .+.+++|.+.+++. ...| +...|..+..++...|+          +++|+..|+++++++|.++.+|+.++.+|...|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            34455555555544 2222 34455555555554444          569999999999999999999999999999875


Q ss_pred             -----------CchHHHHHHHHHHhCCC
Q 047120          566 -----------MWNDARRVRSMMKERNL  582 (634)
Q Consensus       566 -----------~~~~A~~~~~~~~~~~~  582 (634)
                                 ++++|++.|+++.+.+.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence                       89999999999987654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.83  E-value=0.00017  Score=59.17  Aligned_cols=111  Identities=8%  Similarity=-0.056  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 047120          464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPV  539 (634)
Q Consensus       464 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~  539 (634)
                      ++++|.++|++..+ .+ .|+  ..  |...|...+..++|.+.|++.-...+...+..|...|..    .+++++|..+
T Consensus        10 d~~~A~~~~~~aa~-~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACE-LN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHH-TT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHc-CC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            45556666665555 22 122  22  555555555666666666655222455566666666655    5677777777


Q ss_pred             HHHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCC
Q 047120          540 AKHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       540 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  582 (634)
                      ++++.+.  .++..+..|+.+|..    .+++++|.+++++..+.|.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            7777665  355667777777776    6777777777777766654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.75  E-value=0.00011  Score=55.17  Aligned_cols=70  Identities=7%  Similarity=0.001  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          514 EPNDVIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       514 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      ++|+..+..+..++...++   .++|..+++++++.+|.++.....++..+.+.|++++|+.+|+++.+....
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4567778888887754444   799999999999999999999999999999999999999999999887665

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.71  E-value=8.8e-05  Score=58.04  Aligned_cols=68  Identities=10%  Similarity=-0.039  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ++...+..+...+...|++++|+..++++++.+|.++..+..++.+|.+.|++++|++.+++..+...
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            35667888899999999999999999999999999999999999999999999999999999987644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.70  E-value=6.7e-05  Score=75.88  Aligned_cols=109  Identities=9%  Similarity=-0.028  Sum_probs=84.9

Q ss_pred             HHHhccCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCc---hH
Q 047120          493 DILGRAGHIEAARNLIEDM---------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGM-----DSSNSS---SY  554 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~  554 (634)
                      ..+..+|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.+++++++.     +|+.|.   .+
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3466889999999888765         12233 348899999999999999999999999865     466665   68


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHh
Q 047120          555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN  619 (634)
Q Consensus       555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (634)
                      +.|+.+|..+|++++|..++++..+.-..                  .-|..||.+.+...|+..
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~  443 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQ  443 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHH
Confidence            89999999999999999999998664321                  124668888887776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.69  E-value=5.6e-05  Score=75.10  Aligned_cols=105  Identities=8%  Similarity=0.026  Sum_probs=76.9

Q ss_pred             ccCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCc---hHHHHH
Q 047120          497 RAGHIEAARNLIEDM---------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGM-----DSSNSS---SYVLLS  558 (634)
Q Consensus       497 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~  558 (634)
                      ..|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.+++++++.     +|+.|.   .++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            346667776666554         12233 347888888899999999999999988764     455555   688899


Q ss_pred             HHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHh
Q 047120          559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN  619 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (634)
                      .+|..+|++++|..+++++.+.-..                  .-|..||.+.++...|++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIES  432 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHHC
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHhc
Confidence            9999999999999999998665331                  124678888888776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.61  E-value=4.5e-05  Score=62.98  Aligned_cols=88  Identities=13%  Similarity=0.116  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC----------HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120          463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH----------IEAARNLIEDM-PMEPN-DVIWRTLLSACRNY  530 (634)
Q Consensus       463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~  530 (634)
                      +.+++|.+.++...+..  +.+...|..+..++...|+          +++|+..|+++ .+.|+ ..+|..+..+|...
T Consensus        16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            34445555555544421  2234444444444444443          34666666665 44444 45666666666655


Q ss_pred             -----------CChhHHHHHHHHHhccCCCCCc
Q 047120          531 -----------ENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       531 -----------g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                                 |++++|+..|+++++++|.++.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                       5899999999999999998753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.59  E-value=0.00072  Score=55.41  Aligned_cols=112  Identities=8%  Similarity=-0.142  Sum_probs=91.4

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHH
Q 047120          428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEA  503 (634)
Q Consensus       428 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  503 (634)
                      +++++|++.|++..+.| .|+..    +...|...+.+++|.++|++..+ .   -+...+..|...|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            46789999999998887 44444    77778888889999999999887 2   356677788888887    889999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047120          504 ARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       504 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p  548 (634)
                      |.+.|++.-..-++..+..|...|..    .+++++|..+++++.+.+.
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999988333577888888888888    8999999999999998864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.54  E-value=0.0002  Score=53.49  Aligned_cols=65  Identities=15%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.+++..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45778888889999999999999999999999999999999999999999999999999987653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.53  E-value=0.00094  Score=69.25  Aligned_cols=153  Identities=16%  Similarity=0.076  Sum_probs=123.7

Q ss_pred             HcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          426 IHGL-GELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGL----------VKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       426 ~~~~-~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      +.|+ .++|++.++++...  .|+. ..|+.-..++...|+          +++++..++.+.+..  +-+...|..-..
T Consensus        40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w  115 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW  115 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            3444 67889999999985  6764 467766666666666          999999999998742  345677888788


Q ss_pred             HHhccC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC----
Q 047120          494 ILGRAG--HIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYE-NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL----  564 (634)
Q Consensus       494 ~~~~~g--~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----  564 (634)
                      ++.+.|  +++++++.++++ .. +-+..+|+.-..++.+.| .++++.+.++++++.+|.+..+|...+.++.+.    
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence            888999  779999999998 33 446788998888888888 899999999999999999999999999998774    


Q ss_pred             ----------CCchHHHHHHHHHHhCCC
Q 047120          565 ----------GMWNDARRVRSMMKERNL  582 (634)
Q Consensus       565 ----------g~~~~A~~~~~~~~~~~~  582 (634)
                                +.+++++++++++.....
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P  223 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTDP  223 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhCC
Confidence                      557899999988876543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.48  E-value=0.00027  Score=70.38  Aligned_cols=109  Identities=11%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             HHHhccCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCc---hH
Q 047120          493 DILGRAGHIEAARNLIEDM------PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGM-----DSSNSS---SY  554 (634)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~  554 (634)
                      ..+.+.|++++|++++++.      ...|+    ..+++.|+.+|...|++++|+.+++++++.     +|..|.   .+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455667777777777654      12232    347788888898899999999999988754     455555   68


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHh
Q 047120          555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN  619 (634)
Q Consensus       555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (634)
                      +.|+.+|..+|++++|..+++++.+.-..                  .-|..||.+.+...++++
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEE  421 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHH
Confidence            88999999999999999999988664221                  124678888887776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.38  E-value=0.00035  Score=55.13  Aligned_cols=80  Identities=11%  Similarity=0.026  Sum_probs=50.8

Q ss_pred             HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      |+..++.+.+.  .+.+...+..+...|.+.|++++|++.++++ ...| +...|..+..++...|++++|...++++++
T Consensus         4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555441  1233555666667777777777777777665 2233 355677777777777888888888887777


Q ss_pred             cCCC
Q 047120          546 MDSS  549 (634)
Q Consensus       546 ~~p~  549 (634)
                      ..|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            7653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.31  E-value=0.0061  Score=57.97  Aligned_cols=138  Identities=9%  Similarity=-0.052  Sum_probs=77.9

Q ss_pred             CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc----c----CCHHHHHHHHHHhHH
Q 047120          412 GSVDHWNAMINGLA--IHG---LGELAFDLLMEMERLSIEPD-DITFTGLLNACAH----A----GLVKEGLLCFELMRR  477 (634)
Q Consensus       412 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~----~----g~~~~a~~~~~~~~~  477 (634)
                      .+...|...+.+..  ..+   ...+|..+|++..+.  .|+ ...|..+..++..    .    .........++....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            35555665554432  222   246788888888774  666 3344444333321    0    011111111221111


Q ss_pred             hcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      ....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            1122345566666666666667788877777776 4456766666667777777888888888888877777554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.13  E-value=0.0013  Score=49.89  Aligned_cols=65  Identities=17%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             HHHHHhccCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120          491 MVDILGRAGHIEAARNLIEDM-PMEP-NDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                      .+..+.+.|++++|++.++++ ...| +.. .+..+..++...|++++|+..++++++.+|.++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            456677888888888888876 3334 456 7888888888899999999999999999988887763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.13  E-value=0.00065  Score=51.71  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhccCCCCCc-hHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS-SYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ....+...|++++|+..++++++.+|.++. .+..++.+|...|++++|.+.+++..+...
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            455678899999999999999999999999 999999999999999999999999977654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.12  E-value=9.1e-05  Score=71.59  Aligned_cols=230  Identities=10%  Similarity=0.068  Sum_probs=137.1

Q ss_pred             chhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHH
Q 047120           45 NTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL  124 (634)
Q Consensus        45 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  124 (634)
                      .+.+|+.|-.++...+.+   .+|.+.|=+.      .|...|..+|....+.|.+++-+..+...++..-.|  ..=+.
T Consensus        53 ~p~VWs~LgkAqL~~~~v---~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDte  121 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMV---KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETE  121 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSC---TTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHH
T ss_pred             CccHHHHHHHHHHccCch---HHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHH
Confidence            456788888888888777   6665544322      366668888888888888888888887766643333  33456


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------------------
Q 047120          125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI----------------------  182 (634)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------------  182 (634)
                      |+-+|++.++..+..+++       -.||..-...+..-|...|.++.|.-+|..+..                      
T Consensus       122 Li~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr  194 (624)
T 3lvg_A          122 LIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR  194 (624)
T ss_dssp             HHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred             HHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888887766554443       235555556666667777777777777665531                      


Q ss_pred             --CChhHHHHHHHHHHhCCChHHHH----HHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHH
Q 047120          183 --RDSVSYNSMIDGYVKSGNIESAR----ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISW  253 (634)
Q Consensus       183 --~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~  253 (634)
                        .++.+|..+-.+|...+.+.-|.    .+.-.....       ..++..|-..|- +++.+.+++....   .....|
T Consensus       195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL-------~elv~~YE~~G~-f~ELIsLlEaglglErAHmGmF  266 (624)
T 3lvg_A          195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL-------EELINYYQDRGY-FEELITMLEAALGLERAHMGMF  266 (624)
T ss_dssp             TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC-------SGGGSSSSTTCC-CTTSTTTHHHHTTSTTCCHHHH
T ss_pred             hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH-------HHHHHHHHhCCC-HHHHHHHHHHHhCCCchhHHHH
Confidence              25667887777887777765543    222211111       112223333444 5555555555443   344445


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 047120          254 NSMLHGCVKCGKMDDAQALFDKMPK-----------RDVVSWANMIDGYAKLGRVDIAR  301 (634)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~  301 (634)
                      +-|.-.|++ -++++..+.++..-.           .....|.-++-.|.+-.++|.|.
T Consensus       267 TELaILYsK-Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          267 TELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHHHHS-SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHh-cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            554444443 345555555544321           34556777777777777777664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.10  E-value=0.0018  Score=64.21  Aligned_cols=93  Identities=18%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHhHHhc--Ccc---cC-hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 047120          462 AGLVKEGLLCFELMRRIH--KLE---PE-LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEPN-DVIWRTLLS  525 (634)
Q Consensus       462 ~g~~~~a~~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~  525 (634)
                      .|++++|+.++++..+..  -+.   |+ ..+++.|..+|...|++++|+.+++++         +..|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            456677776666655421  111   22 345777778888888888887777665         12344 347888888


Q ss_pred             HHHhcCChhHHHHHHHHHhcc-----CCCCCchH
Q 047120          526 ACRNYENLNVGEPVAKHLIGM-----DSSNSSSY  554 (634)
Q Consensus       526 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~  554 (634)
                      .|...|++++|+.++++++++     +|+.|.+-
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            889999999999999888764     46655443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.06  E-value=0.0023  Score=48.84  Aligned_cols=63  Identities=14%  Similarity=0.062  Sum_probs=35.8

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      ++..|..+...|...|++++|+..|++..+.  .|+ ...|..+..++...|++++|...++++.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555555666666666666666665553  232 34555566666666666666666665554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.03  E-value=0.012  Score=45.79  Aligned_cols=141  Identities=9%  Similarity=0.059  Sum_probs=106.0

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120          424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA  503 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  503 (634)
                      +.-.|..++..++..+....   .+..-|+.++--....-+-+-..++++.+-+.+.+              ..+|+...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence            34568888888888887752   35567777777666667777777777776553222              34566666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       504 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      ....+-.++  .+...+...+......|.-+.-.+++..++...+++|+....++.+|.+.|+..+|.++++++=+.|++
T Consensus        80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            666666654  344556667778889999999999999988888999999999999999999999999999999999985

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.01  E-value=0.0039  Score=61.98  Aligned_cols=98  Identities=11%  Similarity=-0.052  Sum_probs=66.7

Q ss_pred             HHhccCCHHHHHHHHHHhHHhcC--cccC----hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHK--LEPE----LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEPN-DVIWR  521 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~  521 (634)
                      .+...|++++|+.+++++.+...  +.|+    ..+++.|+.+|...|++++|+.+++++         +..|+ ..+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            34456777777777777654211  1222    445777788888888888888777765         12344 34788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCchHH
Q 047120          522 TLLSACRNYENLNVGEPVAKHLIGM-----DSSNSSSYV  555 (634)
Q Consensus       522 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~  555 (634)
                      .|...|...|++++|+.++++++++     +|+.|.+-.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            8888899999999999999988764     566665443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.00  E-value=0.0021  Score=58.39  Aligned_cols=87  Identities=11%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-CchHHHHHHHHhcC-CCchH
Q 047120          501 IEAARNLIEDM-PMEPN---DVIWRTLLSACRN-----YENLNVGEPVAKHLIGMDSSN-SSSYVLLSNMFAGL-GMWND  569 (634)
Q Consensus       501 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  569 (634)
                      ...|...++++ .+.|+   ...|..+...|..     -|+.++|++.|+++++++|.. ...++.++..++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45666666665 56676   5578888888887     499999999999999999974 99999999999884 99999


Q ss_pred             HHHHHHHHHhCCCccCCc
Q 047120          570 ARRVRSMMKERNLKKLPG  587 (634)
Q Consensus       570 A~~~~~~~~~~~~~~~~~  587 (634)
                      |.+++++....+....|+
T Consensus       259 a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          259 FDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999999988875564

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.65  E-value=0.19  Score=54.83  Aligned_cols=127  Identities=14%  Similarity=0.106  Sum_probs=78.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 047120          254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE  333 (634)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  333 (634)
                      ..++..+.+.|.+++|+++.+.     .   ..-.......|++++|.++.+.+.  +...|..+...+.+.|+++.|.+
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~  702 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE  702 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence            4555666677777777766542     1   112344566788888888877663  45678888888888888888888


Q ss_pred             HHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 047120          334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF  406 (634)
Q Consensus       334 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  406 (634)
                      .|.++..          |..+...+...|+.+....+-+.....|.      ++....+|.+.|++++|++++
T Consensus       703 ~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          703 AFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             HHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence            8887751          33444444556666665555544444331      223334455566666666654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.61  E-value=0.00016  Score=69.87  Aligned_cols=241  Identities=12%  Similarity=0.126  Sum_probs=160.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcC
Q 047120          153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK  232 (634)
Q Consensus       153 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~  232 (634)
                      .+.+|..|..+..+.+.+.+|++-|  ++..|...|..+|.+..+.|.+++-+..+...++...+...-+.++-+|++.+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~  130 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN  130 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence            5567888888888888888777654  34467888899999999999999999999888877666666678999999988


Q ss_pred             CcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CChhHHHHHH
Q 047120          233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK------------------------RDVVSWANMI  288 (634)
Q Consensus       233 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~l~  288 (634)
                      + +.+..+++   ..||......+.+-|...|.++.|.-+|..+..                        .++.||..+-
T Consensus       131 r-L~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~  206 (624)
T 3lvg_A          131 R-LAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC  206 (624)
T ss_dssp             S-SSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred             c-HHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence            7 44322211   127777777888899999999999988887752                        4667777777


Q ss_pred             HHHHHcCChHHHHHH-hhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHH
Q 047120          289 DGYAKLGRVDIARRL-FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG  367 (634)
Q Consensus       289 ~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a  367 (634)
                      .+|...+.+.-|... +.-+..+|.  ...++..|-..|.+++-+.+++.-...  -+.....|+-|.-.|++- ++++.
T Consensus       207 ~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY-~PeKl  281 (624)
T 3lvg_A          207 FACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KPQKM  281 (624)
T ss_dssp             HHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred             HHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-CHHHH
Confidence            777777776655322 111222211  123445567778888888888877621  234556777777666654 34444


Q ss_pred             HHHHHHHHH-cCCC------CchhHHHHHHHHhHhcCCHHHHHH
Q 047120          368 VAIHRYLEK-DQFS------LNGKHGVALIDMYSKCGSIENAIK  404 (634)
Q Consensus       368 ~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~~~~~~A~~  404 (634)
                      .+.++..-. .+++      -....|.-++-.|.+-.+++.|..
T Consensus       282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            443332111 1211      134567777888888888887653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.59  E-value=0.0098  Score=56.56  Aligned_cols=133  Identities=11%  Similarity=0.031  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHHh--c---cCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHh----ccCC-------HHHHHHHH
Q 047120          446 EPDDITFTGLLNACA--H---AGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILG----RAGH-------IEAARNLI  508 (634)
Q Consensus       446 ~p~~~~~~~ll~~~~--~---~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~g~-------~~~A~~~~  508 (634)
                      ..+...|...+++..  .   .....+|..+|+++.+.   .|+ ...|..+..+|.    ..+.       ...+.+..
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            445556666665433  2   34468899999999874   565 344444444442    1111       11222222


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          509 EDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       509 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..+ ..+.++.+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.++++...+.
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            233 2355678888888777778999999999999999996 466788999999999999999999999876644

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.58  E-value=0.0038  Score=50.89  Aligned_cols=90  Identities=11%  Similarity=-0.021  Sum_probs=60.9

Q ss_pred             CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhH
Q 047120          463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG---HIEAARNLIEDM-PME-P--NDVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~  535 (634)
                      +....+.+.|.+... .+ .++..+...+..++.+.+   +.++++.++++. ... |  ....+..|.-++.+.|++++
T Consensus        12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            345566666666654 23 356677667777888877   556788888776 223 4  24455666667788888888


Q ss_pred             HHHHHHHHhccCCCCCchH
Q 047120          536 GEPVAKHLIGMDSSNSSSY  554 (634)
Q Consensus       536 a~~~~~~~~~~~p~~~~~~  554 (634)
                      |.+.++.+++.+|.+..+.
T Consensus        90 A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHH
Confidence            8888888888888765443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.56  E-value=0.01  Score=44.27  Aligned_cols=70  Identities=10%  Similarity=0.029  Sum_probs=53.4

Q ss_pred             ccChhHHHHHHHHHhccCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          482 EPELQHYGCMVDILGRAGH---IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       482 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      +.+...+..+..++...++   .++|..++++. ...|+ ......+...+.+.|++++|+..|+++++.+|+++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            3456677777777764444   68888888887 44555 66777777888999999999999999999998843

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.49  E-value=0.084  Score=57.71  Aligned_cols=44  Identities=16%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                      ..|++++|.++.+.+.  +...|..+...+.+.++++.|.+.|.++
T Consensus       664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3444555544444332  3344555555555555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.44  E-value=0.014  Score=44.76  Aligned_cols=71  Identities=11%  Similarity=0.011  Sum_probs=48.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-----P----MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      +..|+..+.+.|+++.|..-++++     .    -.+....+..|..++.+.|+++.|...++++++..|.++.+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            334555555555555555555443     0    1234567788888889999999999999999999998877765554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.24  E-value=0.016  Score=47.25  Aligned_cols=77  Identities=8%  Similarity=-0.081  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCccc--ChhHHHHHHHHHhccCCHHHHHH
Q 047120          432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAG---LVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARN  506 (634)
Q Consensus       432 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~  506 (634)
                      .+.+.|.+..+.|. ++..+...+..++++.+   +.++++.+++.+.+. . .|  ..+.+-.|.-+|.+.|++++|.+
T Consensus        16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            33444444444332 34444444444555544   344555555555442 1 12  12333344444555555555555


Q ss_pred             HHHhC
Q 047120          507 LIEDM  511 (634)
Q Consensus       507 ~~~~~  511 (634)
                      .++.+
T Consensus        93 y~~~l   97 (152)
T 1pc2_A           93 YVRGL   97 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.19  E-value=0.013  Score=44.89  Aligned_cols=68  Identities=12%  Similarity=-0.095  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-------SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+..-...++..+.+.|+++.|...++++++..       +..+..+..|+.+|.+.|++++|..+++++.+...
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            345556678888999999999999999999863       23456899999999999999999999999976533

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.37  Score=40.29  Aligned_cols=128  Identities=11%  Similarity=0.114  Sum_probs=73.6

Q ss_pred             HhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120          392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      .....|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+...         +..+.-.|.-.|+.+.-.++
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            345567777777776655  3566777777777777777777777776542         22333334445666555544


Q ss_pred             HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120          472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                      -+.... .|      -++.-...+.-.|+++++.+++.+.+.-|....+      ....|-.+.|.++.+.+
T Consensus        83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred             HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence            444333 11      2444555566777888888777776533322211      12245566666665544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.77  E-value=2.2  Score=44.14  Aligned_cols=114  Identities=9%  Similarity=-0.057  Sum_probs=64.1

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120          428 GLGELAFDLLMEMERLSIEPDDI----TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA  503 (634)
Q Consensus       428 ~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  503 (634)
                      .+.+.|...+....+.+ ..+..    ....+.......+...++...+......   .++.....-.+....+.|+++.
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence            36788888887776432 22322    2333333444455344555555554331   2333333334444456788888


Q ss_pred             HHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          504 ARNLIEDMPMEP-N-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       504 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      |...|+.|+..+ + ..-..-+..++...|+.++|..+|+++.+
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888884332 2 33333455566777888888888888764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.87  Score=38.04  Aligned_cols=102  Identities=11%  Similarity=0.076  Sum_probs=61.1

Q ss_pred             HHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 047120          290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA  369 (634)
Q Consensus       290 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  369 (634)
                      .....|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+...          +..+.-.|...|+.++...
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHH
Confidence            345667777777776655  3456777777777777777777777776651          3344444555666666665


Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120          370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI  409 (634)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  409 (634)
                      +-+.....|      -++.....+...|+++++.++|.+.
T Consensus        82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            555444443      1233334455566666666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.96  E-value=0.033  Score=50.73  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhHHhcCcccC---hhHHHHHHHHHhcc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCC
Q 047120          465 VKEGLLCFELMRRIHKLEPE---LQHYGCMVDILGRA-----GHIEAARNLIEDM-PMEPN--DVIWRTLLSACRN-YEN  532 (634)
Q Consensus       465 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~  532 (634)
                      ...|...++++.+.   .|+   -..|..++..|.+.     |+.++|.+.|++. .+.|+  ..++......++. .|+
T Consensus       179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            44555555555542   444   33566677667663     7777777777776 45553  4555566666655 477


Q ss_pred             hhHHHHHHHHHhccCCC
Q 047120          533 LNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       533 ~~~a~~~~~~~~~~~p~  549 (634)
                      .+++.+.+++++...|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            78888888888777665

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.93  E-value=0.22  Score=38.91  Aligned_cols=90  Identities=11%  Similarity=-0.023  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 047120          465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA---ARNLIEDM-PME-P--NDVIWRTLLSACRNYENLNVGE  537 (634)
Q Consensus       465 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~  537 (634)
                      ...+.+-|..... .+ .++..+--.+..++.+..+..+   ++.++++. ... |  .......|.-++.+.|++++|.
T Consensus        17 l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            3444445554443 12 2555665566777777776665   77777766 322 3  1234455666788899999999


Q ss_pred             HHHHHHhccCCCCCchHHH
Q 047120          538 PVAKHLIGMDSSNSSSYVL  556 (634)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~  556 (634)
                      +.++.+++..|.+..+...
T Consensus        95 ~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHH
Confidence            9999999999988765543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.33  E-value=0.13  Score=54.26  Aligned_cols=55  Identities=11%  Similarity=0.001  Sum_probs=50.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120          524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK  578 (634)
Q Consensus       524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  578 (634)
                      ...|.+.|+++.|.++.++++...|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            3446789999999999999999999999999999999999999999999999884

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.12  E-value=0.21  Score=40.11  Aligned_cols=52  Identities=6%  Similarity=-0.047  Sum_probs=28.6

Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +|.++|.++|+.+++....-+..|...+..-.++|+...|.+++.+....+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            5556666666666554333344555555555566666666666655555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.91  E-value=0.11  Score=40.65  Aligned_cols=68  Identities=7%  Similarity=-0.077  Sum_probs=57.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhccC-C-CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          514 EPNDVIWRTLLSACRNYENLNV---GEPVAKHLIGMD-S-SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       514 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .|+..+-..+.+++.+..+...   ++.+++.+++.+ | ......+.|+-++.+.|++++|.++++.+.+..
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4778888889999988776655   999999999887 4 466789999999999999999999999997653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=93.53  E-value=3.4  Score=35.84  Aligned_cols=18  Identities=11%  Similarity=0.080  Sum_probs=7.2

Q ss_pred             CChhHHHHHHHHHHHcCC
Q 047120          279 RDVVSWANMIDGYAKLGR  296 (634)
Q Consensus       279 ~~~~~~~~l~~~~~~~g~  296 (634)
                      ++..+-...+.++.+.|.
T Consensus       124 ~~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A          124 EDWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHcCC
Confidence            344333344444444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.28  E-value=2.4  Score=33.30  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=99.2

Q ss_pred             hHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120          393 YSKCGSIENAIKVFEQIED-GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      +.-.|..++..++..+..+ .+..-||=+|.-....-+-+-..++++.+-+-   .|          ....|++......
T Consensus        17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C   83 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC   83 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence            4456888888898888764 35555666666666666666666666655431   12          2345666666666


Q ss_pred             HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED-M-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      +-.+-.      +......-++.+..+|+.++-.+++.+ . ..+|++.....+..+|.+.|+..+|.+++.++.+.+-
T Consensus        84 ~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           84 GVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            555432      455667778889999999999999998 4 4568889999999999999999999999999987763

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.06  E-value=0.63  Score=37.03  Aligned_cols=71  Identities=10%  Similarity=0.090  Sum_probs=35.0

Q ss_pred             ccChhHHHHHHHHHhccCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          482 EPELQHYGCMVDILGRAGHIE---AARNLIEDM-PMEP-N-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       482 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                      .|+..+--.+..++.+..+.+   +++.++++. ...| + ......|.-++.+.|++++|.++.+.+++..|.+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            344444444455555554433   344555544 1123 1 223333444566666666666666666666665543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=92.97  E-value=4  Score=35.04  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=7.1

Q ss_pred             CHhHHHHHHHHHHccCC
Q 047120          347 DDASLVIVLSAIAQLGH  363 (634)
Q Consensus       347 ~~~~~~~ll~~~~~~~~  363 (634)
                      +...-...+.++...|+
T Consensus       151 ~~~vr~~A~~aL~~~~~  167 (201)
T 3ltj_A          151 DGWVRQSAADALGEIGG  167 (201)
T ss_dssp             SHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            33333444444444443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.03  E-value=13  Score=38.54  Aligned_cols=263  Identities=9%  Similarity=-0.032  Sum_probs=123.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcH
Q 047120          157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGL  235 (634)
Q Consensus       157 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~  235 (634)
                      -+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+-.. ......+..++..+.+.|. +
T Consensus        75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~-l  152 (618)
T 1qsa_A           75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK-Q  152 (618)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC-C
Confidence            34455667777888888876666 3334555555667777778876666655554433 2334456667776665444 1


Q ss_pred             HHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChh--
Q 047120          236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV--  313 (634)
Q Consensus       236 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--  313 (634)
                      ...             ..-.-+......|+...|..+...+..........++..+.+   ...+........ ++..  
T Consensus       153 t~~-------------~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~  215 (618)
T 1qsa_A          153 DPL-------------AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTR  215 (618)
T ss_dssp             CHH-------------HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHH
T ss_pred             CHH-------------HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhH
Confidence            111             011113445556666666666665522111122222222222   222222222221 1111  


Q ss_pred             -hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120          314 -ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI  390 (634)
Q Consensus       314 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  390 (634)
                       .+...+.-+.+ .+.+.|...+........+.+...  ....+.......+...++...+.......  .+.....-.+
T Consensus       216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~  292 (618)
T 1qsa_A          216 QMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV  292 (618)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHH
Confidence             11111222222 256677777766654422222211  11112222223332344444444433322  2222233333


Q ss_pred             HHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120          391 DMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEME  441 (634)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~  441 (634)
                      ....+.|+++.|...|+.+...   ......=+..++...|+.++|..+|..+.
T Consensus       293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3344567777777777776532   22223334455566677777777776665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.88  E-value=16  Score=39.51  Aligned_cols=150  Identities=13%  Similarity=-0.029  Sum_probs=67.5

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH--HHHHHHHhccC
Q 047120          424 LAIHGLGELAFDLLMEMERLSIEPDDITFT--GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAG  499 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g  499 (634)
                      +...|+.+....++..+.+.   .+.....  .+.-++...|+.+.+..+.+.+...  ..|....-  .++.-+|+..|
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSC
T ss_pred             hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCC
Confidence            33445555556666655543   1222222  2222333556666666666666541  11222111  13344566777


Q ss_pred             CHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH--HhcCCC-chHHHHHH
Q 047120          500 HIEAARNLIEDMPMEPNDV--IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM--FAGLGM-WNDARRVR  574 (634)
Q Consensus       500 ~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~-~~~A~~~~  574 (634)
                      +.....+++..+.-.++..  ....+.-++...|+.+.+.++++.+.+-.  ++..-...+.+  ....|. ..+++.++
T Consensus       575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            7666666666652222222  22222223444566555555554443322  23322222222  222222 25677777


Q ss_pred             HHHHhC
Q 047120          575 SMMKER  580 (634)
Q Consensus       575 ~~~~~~  580 (634)
                      ..+...
T Consensus       653 ~~L~~D  658 (963)
T 4ady_A          653 DPLTKD  658 (963)
T ss_dssp             HHHHTC
T ss_pred             HHHccC
Confidence            777543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.63  E-value=11  Score=37.22  Aligned_cols=246  Identities=12%  Similarity=0.054  Sum_probs=139.2

Q ss_pred             cCCchHHHHHHHHHHhcC----CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCch--hHHHHHHHHhHhcC
Q 047120          325 NGYSMKALEIFDNMQCEL----YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNG--KHGVALIDMYSKCG  397 (634)
Q Consensus       325 ~g~~~~A~~~~~~m~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~~  397 (634)
                      .|++++|++.+..+.+..    ...........++..|...++++...+.+..+.+. |.....  .....++.......
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            377888988887776432    23344567788888999999999988877766543 322211  11222333333333


Q ss_pred             CHH--HHHHHHHhccC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHh
Q 047120          398 SIE--NAIKVFEQIED---G-------SVDHWNAMINGLAIHGLGELAFDLLMEMERL--SIEPD---DITFTGLLNACA  460 (634)
Q Consensus       398 ~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~  460 (634)
                      ..+  .-..+.+.+..   .       .......|...|...|++.+|..++..+...  |..+.   ...+..-++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            322  23333333321   1       1123466788888899999999999887643  22222   235666777888


Q ss_pred             ccCCHHHHHHHHHHhHHhc-Cc--ccC--hhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047120          461 HAGLVKEGLLCFELMRRIH-KL--EPE--LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV  535 (634)
Q Consensus       461 ~~g~~~~a~~~~~~~~~~~-~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  535 (634)
                      ..+++..|..++.++.... ..  .|+  ...+...+..+...+++.+|.+.|.++            ...+...++...
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~~  256 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEAK  256 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHHH
Confidence            8899999998888875311 11  222  234667777788888888887776654            233333444443


Q ss_pred             HHHHHHHHhc---cCCCCCchHHHHHHHHhcC--CCchHHHHHHHHHHhCCC
Q 047120          536 GEPVAKHLIG---MDSSNSSSYVLLSNMFAGL--GMWNDARRVRSMMKERNL  582 (634)
Q Consensus       536 a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~  582 (634)
                      ...++..++-   +.|.++.--..+...+...  ...+.-..+.+......+
T Consensus       257 ~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L  308 (445)
T 4b4t_P          257 WKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL  308 (445)
T ss_dssp             HHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchH
Confidence            3333333321   2455555445555554432  223333344444455544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.34  E-value=4.6  Score=32.50  Aligned_cols=96  Identities=8%  Similarity=0.119  Sum_probs=52.0

Q ss_pred             CChhhHHHHHHHHHHcCCc------hHHHHHHHHHHhcCCCCCCHh----HHHHHHH---HHHccCChHHHHHHHHHHHH
Q 047120          310 RDVVACNAMMGGYVRNGYS------MKALEIFDNMQCELYLHPDDA----SLVIVLS---AIAQLGHIDKGVAIHRYLEK  376 (634)
Q Consensus       310 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~~~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~  376 (634)
                      .|..+|-..+...-+.|+.      ++..++|++....  ++|+..    .|..+--   .+...++.+.|.++|+.+++
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4667777777777777887      7777888877754  556431    1111111   11223566666777666655


Q ss_pred             cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 047120          377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ  408 (634)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  408 (634)
                      ..-.. ..++....+.-.+.|++..|.+++.+
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~  119 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQK  119 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            42222 44444444444444444444444443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=91.25  E-value=6.5  Score=33.67  Aligned_cols=108  Identities=8%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCC
Q 047120          248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY  327 (634)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~  327 (634)
                      ++...-...+.++.+.++.+....+...+..++..+-...+.++.+.++.+....+.+.+.+++..+-...+.++...|.
T Consensus        88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  167 (201)
T 3ltj_A           88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG  167 (201)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            33333333344444444433333333333345555555555555555554333333344444555555555555555544


Q ss_pred             chHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc
Q 047120          328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ  360 (634)
Q Consensus       328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~  360 (634)
                       .++...+..+...    ++...-...+.++.+
T Consensus       168 -~~~~~~L~~~l~d----~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          168 -ERVRAAMEKLAET----GTGFARKVAVNYLET  195 (201)
T ss_dssp             -HHHHHHHHHHHHH----CCHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence             3455555555433    344333444444433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.04  E-value=9.7  Score=35.29  Aligned_cols=169  Identities=14%  Similarity=0.014  Sum_probs=99.8

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD----LLMEMERLSIEPDDITFTGLLNACA  460 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~  460 (634)
                      .|.++..=|.+.+++++|++++..           -...+.+.|+...|.+    +++-..+.++.++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            445666668888888888888643           2344556677655544    3555666788888877777777665


Q ss_pred             ccCCHH-HHHHHHHHhHH---hcC--cccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 047120          461 HAGLVK-EGLLCFELMRR---IHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY---E  531 (634)
Q Consensus       461 ~~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g  531 (634)
                      .-..-+ .=.++.+.+.+   ..|  -.-++.....+...|.+.|++.+|..-|-- +...|...+..++.-+...   |
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~  182 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI  182 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence            422111 11222222222   011  123567788889999999999999987752 2122455555555444333   4


Q ss_pred             ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ...++--++-+              .+--|.-.|+...|..+++...+
T Consensus       183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence            43333222222              22346678899999999887643

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.03  E-value=9.7  Score=35.29  Aligned_cols=183  Identities=10%  Similarity=0.048  Sum_probs=108.1

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHH--
Q 047120          257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI--  334 (634)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--  334 (634)
                      +......|++=+|.+.+           .++..-|.+.+++++|.+++..-           ...+.+.|+...|.++  
T Consensus        20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~   77 (312)
T 2wpv_A           20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF   77 (312)
T ss_dssp             HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence            44556677777777544           46777788888888888776432           3445566766655554  


Q ss_pred             --HHHHHhcCCCCCCHhHHHHHHHHHHccC--Ch---HHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcCCHHHHHHH
Q 047120          335 --FDNMQCELYLHPDDASLVIVLSAIAQLG--HI---DKGVAIHRYLEKDQF--SLNGKHGVALIDMYSKCGSIENAIKV  405 (634)
Q Consensus       335 --~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~---~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~  405 (634)
                        .+-..+. +++++......++..+....  ..   +-.....++..+.|-  .-++.....+...|.+.|++.+|+..
T Consensus        78 llvev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H  156 (312)
T 2wpv_A           78 YLLEVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY  156 (312)
T ss_dssp             HHHHHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence              3333333 67777777777776665432  11   122233333334332  24778888899999999999999988


Q ss_pred             HHhccCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          406 FEQIEDGSVDHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       406 ~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      |-.....++..+..++.-+...   |...++--++-               ..+--|.-.++...|..+++...+
T Consensus       157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            7643333455555554444433   33333221111               112234457888888888887654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.97  E-value=10  Score=35.43  Aligned_cols=169  Identities=11%  Similarity=0.030  Sum_probs=100.0

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL----LMEMERLSIEPDDITFTGLLNACA  460 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~  460 (634)
                      +|.++..=|.+.+++++|++++-.           -...+.+.|+...|.++    ++-..+.++++|......++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            445666668888999999887643           23345556665554443    355556677888777777777666


Q ss_pred             ccCCHH-HHHHHHHHhHH---hcC--cccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047120          461 HAGLVK-EGLLCFELMRR---IHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN  534 (634)
Q Consensus       461 ~~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  534 (634)
                      ....-+ .=..+.+.+.+   +.|  -.-|......+...|.+.|++.+|..-|= .+..+....+..++.-+...+...
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~  184 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH  184 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence            544211 11222222222   122  22356677788999999999999998884 343444466655554444433322


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ++--++-              ..+--|.-.|+...|..+++...+
T Consensus       185 e~dlfia--------------RaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          185 TAPLYCA--------------RAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             GHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2222222              223447778899999888776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=90.48  E-value=8  Score=33.40  Aligned_cols=80  Identities=10%  Similarity=0.091  Sum_probs=36.0

Q ss_pred             CChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 047120          216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG  295 (634)
Q Consensus       216 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g  295 (634)
                      ++...-...+.++.+.+. .+....+.+.+..++...-...+.++.+.+..+....+...+..++..+-...+.++.+.+
T Consensus        93 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A           93 EDGWVRQSAAVALGQIGD-ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            333333344444444443 2222333333333555555555555555555443333333344455555555555555554


Q ss_pred             C
Q 047120          296 R  296 (634)
Q Consensus       296 ~  296 (634)
                      .
T Consensus       172 ~  172 (211)
T 3ltm_A          172 G  172 (211)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.44  E-value=0.39  Score=37.70  Aligned_cols=71  Identities=10%  Similarity=0.086  Sum_probs=36.0

Q ss_pred             cChhHHHHHHHHHhccCCH---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120          483 PELQHYGCMVDILGRAGHI---EAARNLIEDM-PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS  553 (634)
Q Consensus       483 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  553 (634)
                      |+..+--.+..++.+..+.   .+++.++++. ...|.  ...+..|.-++.+.|++++|.+..+.+++..|.+..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            4444444444555554443   2355555544 22231  2244445555666666666666666666666665443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.19  E-value=16  Score=35.13  Aligned_cols=162  Identities=9%  Similarity=-0.055  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCC---chhHHHHHHHHhHhc-CCHHHHHHHHHhccC---CChhHH---
Q 047120          349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSL---NGKHGVALIDMYSKC-GSIENAIKVFEQIED---GSVDHW---  417 (634)
Q Consensus       349 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~---~~~~~~---  417 (634)
                      .....+...+.+.|+.++...++......- .-+   .......+++.+... +..+.-.++..+..+   ..-.+|   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777777777766554321 011   223445566665543 223333333333221   111122   


Q ss_pred             ---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-cccChhH-
Q 047120          418 ---NAMINGLAIHGLGELAFDLLMEMERLSIEPDD-----ITFTGLLNACAHAGLVKEGLLCFELMRRIHK-LEPELQH-  487 (634)
Q Consensus       418 ---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-  487 (634)
                         ..++..|...|++.+|.+++.++.+.--..|.     ..+..-+..|...+++.++...+..+....+ +.+++.+ 
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               24667777777777777777776653212121     2344455566677777777777766654221 1122222 


Q ss_pred             ---HHHHHHHHh-ccCCHHHHHHHHHh
Q 047120          488 ---YGCMVDILG-RAGHIEAARNLIED  510 (634)
Q Consensus       488 ---~~~l~~~~~-~~g~~~~A~~~~~~  510 (634)
                         ...-+..+. ..++|.+|...|-+
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e  206 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYE  206 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence               112223344 56777777766655

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.95  E-value=29  Score=37.64  Aligned_cols=249  Identities=10%  Similarity=-0.011  Sum_probs=126.6

Q ss_pred             HHHHcCChHHHHHHhhhCCC----CCh--hhHHHHHHHHHHcCCchHHHHHHHHHHhcCC-CC-----CCHhHHHHHHHH
Q 047120          290 GYAKLGRVDIARRLFDEMPK----RDV--VACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH-----PDDASLVIVLSA  357 (634)
Q Consensus       290 ~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~-----p~~~~~~~ll~~  357 (634)
                      +....|+.++++.+++....    .+.  ..-..+.-+....|..+++++++........ +.     +....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            45567777788887777654    121  1222334455666666677777776654311 00     111111222222


Q ss_pred             HHccCC-hHHHHHHHHHHHHcCCCCch--hHHHHHHHHhHhcCCHHHHHHHHHhccC-CChhH--HHHHHHHHHHcCChH
Q 047120          358 IAQLGH-IDKGVAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIED-GSVDH--WNAMINGLAIHGLGE  431 (634)
Q Consensus       358 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~~~~~  431 (634)
                      ....|. -+++...+..+....- ...  ..-.++...+...|+-+....++..+.+ .+...  .-.+.-++...|+.+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence            232332 2344555554444221 111  1122333445566777666666665432 22222  233334445678888


Q ss_pred             HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHH
Q 047120          432 LAFDLLMEMERLSIEPDDI-TFT---GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL  507 (634)
Q Consensus       432 ~A~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  507 (634)
                      .+..+++.+...   .++. -|.   .+.-+|+..|+.....+++..+..+  ...++.....+.-++...|+.+.+.++
T Consensus       542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            888888877763   2332 232   3445677888888777788888762  222333344444455556666666677


Q ss_pred             HHhCC--CCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHh
Q 047120          508 IEDMP--MEPNDVIWRTLLSACRNYENL-NVGEPVAKHLI  544 (634)
Q Consensus       508 ~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~  544 (634)
                      ++.+.  ..|....-..+.-+....|.. .++...+..+.
T Consensus       617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            66552  233333223333333444443 56777777775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.61  E-value=0.82  Score=44.54  Aligned_cols=53  Identities=9%  Similarity=-0.119  Sum_probs=24.7

Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM  577 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  577 (634)
                      .++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|++.
T Consensus       179 ~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          179 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.40  E-value=3.2  Score=30.59  Aligned_cols=63  Identities=10%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      +.-+..+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+.  ...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence            45567777788888889999999999999999999999999999999875543  3556777664

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.23  E-value=17  Score=34.00  Aligned_cols=183  Identities=13%  Similarity=0.031  Sum_probs=105.4

Q ss_pred             HHHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 047120          257 LHGCVKCGKM---DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE  333 (634)
Q Consensus       257 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  333 (634)
                      +...+..|++   =+|.+.           |.++..-|.+.+++++|.+++..           -...+.+.|+...+.+
T Consensus        19 l~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~D   76 (336)
T 3lpz_A           19 LQRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGD   76 (336)
T ss_dssp             HHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHH
Confidence            3455667887   666654           44667778888999998887642           2344555666655544


Q ss_pred             HH----HHHHhcCCCCCCHhHHHHHHHHHHccCChH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHhHhcCCHHHH
Q 047120          334 IF----DNMQCELYLHPDDASLVIVLSAIAQLGHID-KGVAIHRYL----EKDQ--FSLNGKHGVALIDMYSKCGSIENA  402 (634)
Q Consensus       334 ~~----~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A  402 (634)
                      +-    +-..+. ++++|......++..+.....-+ .=..+.+.+    .+.|  -.-++.....+...|.+.+++.+|
T Consensus        77 L~~llvevy~~~-~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A  155 (336)
T 3lpz_A           77 LAVLLVDTFRQA-GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA  155 (336)
T ss_dssp             HHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence            43    333333 67777777777776665544311 112233333    3333  334678888899999999999999


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       403 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      ...|-.-.++++..|..++.-+...+...++              +...- ..+--|.-.++...|..+++...+
T Consensus       156 e~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfia-RaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          156 EKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCA-RAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHH-HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9888532333335555544444333321111              11111 222235557788888887766554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=87.85  E-value=8.7  Score=31.50  Aligned_cols=28  Identities=18%  Similarity=0.218  Sum_probs=18.1

Q ss_pred             hhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120          383 GKHGVALIDMYSKCGSIENAIKVFEQIE  410 (634)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (634)
                      ...-.-+..+|.+.+++++|+.+++.++
T Consensus       122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          122 IEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3444456667777777777777777665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=87.62  E-value=2.3  Score=34.91  Aligned_cols=54  Identities=7%  Similarity=-0.125  Sum_probs=29.3

Q ss_pred             HHHHHhHhcCCHHHHHHHHHhcc-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIE-----DGSV-------DHWNAMINGLAIHGLGELAFDLLMEME  441 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~  441 (634)
                      .-+..+...+.++.|+-+.+.+.     ++++       .++..+..++...+++.+|...|++..
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34555666666776666655543     1221       134445555666666666666666543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=87.37  E-value=2.9  Score=44.24  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=22.4

Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          553 SYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       553 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      -|-.||.+..+.+++++|.+.|+.......
T Consensus       615 EWEiLGlla~RL~h~~EA~~a~~~~l~~RF  644 (754)
T 4gns_B          615 EWELLGLIMLRTWHWEDAVACLRTSIVARF  644 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            477788888888888888888877765543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.27  E-value=14  Score=41.71  Aligned_cols=163  Identities=10%  Similarity=0.100  Sum_probs=97.4

Q ss_pred             HHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChH
Q 047120          286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID  365 (634)
Q Consensus       286 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~  365 (634)
                      .++..+.+.+..+.+.++...... +...-..+..++...|++++|.+.|++...  |+..+.....          ...
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~----------~~~  883 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA----------VLR  883 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCS----------SHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhh----------hhc
Confidence            455566677777777766655544 333345567778888888888888877642  2322211000          000


Q ss_pred             HHHHHHHHHHHcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCCh----hHHHHHHHHHHHcCChHHHHH
Q 047120          366 KGVAIHRYLEKDQ--FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSV----DHWNAMINGLAIHGLGELAFD  435 (634)
Q Consensus       366 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~A~~  435 (634)
                      .    +..+....  ...-...|..++..+.+.+.++.+.++-....    ..+.    ..|..+...+...|++++|..
T Consensus       884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            0    01111110  11223456677778888888887776665433    2222    258888899999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047120          436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKE  467 (634)
Q Consensus       436 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  467 (634)
                      .+-.+-....  -...+..++..++..|..+.
T Consensus       960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence            9888776432  34567777777776666443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.15  E-value=3.9  Score=46.34  Aligned_cols=65  Identities=6%  Similarity=-0.074  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-----hHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS-----SYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .-|..++..+.+.|.++.+.++.+.+++..+.+..     .|..+...+...|++++|...+-.+.+...
T Consensus       900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence            34566666777778888888887777766533322     456666777777888888887777765544

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.68  E-value=3.8  Score=31.99  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 047120          103 ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS  162 (634)
Q Consensus       103 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  162 (634)
                      ...-++.+....+.|++......+++|.+.+|+..|..+++-++..- .+...+|..+++
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            44556666677788888888888888888888888888888776543 333556666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.74  E-value=4.4  Score=32.24  Aligned_cols=69  Identities=6%  Similarity=-0.159  Sum_probs=28.8

Q ss_pred             CchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047120           44 KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD  112 (634)
Q Consensus        44 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  112 (634)
                      |++.+--.+.-++.++.......++..+++.+-+..+.......-.+.-++.+.|++++|++..+.+++
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344443334444444444333344444444444322211122222333344455555555555555554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.30  E-value=13  Score=33.39  Aligned_cols=121  Identities=14%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh----HHHHHHHHHhc
Q 047120          423 GLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ----HYGCMVDILGR  497 (634)
Q Consensus       423 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~  497 (634)
                      ...+.|+.++|++....-++.  .| |...-..++..+|-.|+|+.|.+-++...+.   .|+..    .|..+|.+   
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence            344567777777777766665  34 3455566777777777777777777776652   34422    23333322   


Q ss_pred             cCCHHHHH-HHHHhC--C--CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120          498 AGHIEAAR-NLIEDM--P--MEPNDVIWRTLLSAC--RNYENLNVGEPVAKHLIGMDSSNSSSYV  555 (634)
Q Consensus       498 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~  555 (634)
                          +... ++|.--  +  ......-...++.+.  ...|+.++|.++-..+.+.-|..+...+
T Consensus        78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~  138 (273)
T 1zbp_A           78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  138 (273)
T ss_dssp             ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence                1111 122111  0  111122223344443  3467777777777777777766655443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.87  E-value=7.2  Score=30.51  Aligned_cols=63  Identities=11%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      +.-+..+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+  +...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence            3445667777788888999999999999999999999999999999987544  44566777764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.76  E-value=39  Score=33.31  Aligned_cols=199  Identities=8%  Similarity=-0.021  Sum_probs=120.7

Q ss_pred             CChHHHHHHhhhCCC---------CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH--HHHHHHHHHccCC
Q 047120          295 GRVDIARRLFDEMPK---------RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS--LVIVLSAIAQLGH  363 (634)
Q Consensus       295 g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~  363 (634)
                      |+++.|.+.+-.+.+         ........++..|...|+++...+.+..+....|..+...+  ...++........
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            678888877655442         23445777889999999999998888877755454443322  1222233333343


Q ss_pred             hHHHHH--HHHHHHH--cC-CCC---chhHHHHHHHHhHhcCCHHHHHHHHHhccC----C-----ChhHHHHHHHHHHH
Q 047120          364 IDKGVA--IHRYLEK--DQ-FSL---NGKHGVALIDMYSKCGSIENAIKVFEQIED----G-----SVDHWNAMINGLAI  426 (634)
Q Consensus       364 ~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~li~~~~~  426 (634)
                      .+....  .......  .| +-.   .......|...|...|++.+|..++..+..    .     -+..+...+..|..
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            332222  1111110  11 111   233456788999999999999999998751    1     13367777889999


Q ss_pred             cCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          427 HGLGELAFDLLMEMER----LSIEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       427 ~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      .+++.+|..++.++..    ....|+.  ..+...+..+...+++.+|.+.                |..+...+...++
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~~d  253 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIKSD  253 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcccccCC
Confidence            9999999999998642    2222222  2455566666777777776554                3334555666666


Q ss_pred             HHHHHHHHH
Q 047120          501 IEAARNLIE  509 (634)
Q Consensus       501 ~~~A~~~~~  509 (634)
                      .......+.
T Consensus       254 ~~~~~~~L~  262 (445)
T 4b4t_P          254 EAKWKPVLS  262 (445)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655444443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.67  E-value=2.1  Score=38.40  Aligned_cols=53  Identities=9%  Similarity=-0.039  Sum_probs=27.3

Q ss_pred             HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      .+.|++++++..++..++.+|.|...-..|..+|+-.|+|+.|.+.++...+.
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            34455555555555555555555555555555555555555555555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	634
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.05
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.04
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.03
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.9
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.64
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.59
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.56
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.5
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.27
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.12
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.11
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.1
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.03
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.98
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.87
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.83
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.71
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.67
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.19
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.07
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.76
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.11
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.99
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.72
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.7
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.04
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.14
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.85
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.16

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-21  Score=190.74  Aligned_cols=366  Identities=12%  Similarity=0.069  Sum_probs=265.4

Q ss_pred             HHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHH
Q 047120          162 SLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA  238 (634)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a  238 (634)
                      ..+.+.|++++|++.++++.+  | +...+..+...+.+.|++++|++.|+++.+..|+                     
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------------   65 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---------------------   65 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------
Confidence            344455566666655555431  2 3445555555555555555555555555443332                     


Q ss_pred             HHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCC---CCCh
Q 047120          239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMP---KRDV  312 (634)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~  312 (634)
                                +..++..+...|.+.|++++|+..+....+   .+..............+....+........   ....
T Consensus        66 ----------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (388)
T d1w3ba_          66 ----------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY  135 (388)
T ss_dssp             ----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred             ----------CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                      233455555566666666666666665543   233333344444444444444443333222   2344


Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID  391 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  391 (634)
                      .............+....+...+......   .| +...+..+...+...|+++.|...+..+.+.. +.+...+..+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  211 (388)
T d1w3ba_         136 CVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN  211 (388)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cccccccccccccchhhhhHHHHHHhhcc---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhh
Confidence            45555666677778888888888877744   34 44667777788888999999999998888754 445678888899


Q ss_pred             HhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 047120          392 MYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKE  467 (634)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~  467 (634)
                      .+...|++++|...+++..   ..+...+..+...+.+.|++++|+..|++..+.  .|+ ..++..+...+...|++++
T Consensus       212 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~  289 (388)
T d1w3ba_         212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAE  289 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999998765   346667888999999999999999999999875  555 5688899999999999999


Q ss_pred             HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120          468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG  545 (634)
Q Consensus       468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  545 (634)
                      |...++.+...  .+.+...+..+...+.+.|++++|++.++++ ...|+ ..++..+...+...|++++|+..++++++
T Consensus       290 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         290 AEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999998773  3456677889999999999999999999986 55665 66888899999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHhcCCC
Q 047120          546 MDSSNSSSYVLLSNMFAGLGM  566 (634)
Q Consensus       546 ~~p~~~~~~~~l~~~~~~~g~  566 (634)
                      ++|.++.+|..++.+|.+.|+
T Consensus       368 l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         368 ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCTTCHHHHHHHHHHHHHTCC
T ss_pred             hCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999998885

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.5e-20  Score=180.69  Aligned_cols=326  Identities=12%  Similarity=0.050  Sum_probs=262.7

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHH
Q 047120          250 LISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYV  323 (634)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  323 (634)
                      +..+..+...|.+.|++++|...++++.+   .+..++..+...|.+.|++++|...+....+   .+...+........
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            34455556667777778888888777653   3567888999999999999999999988764   34445555556666


Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI  403 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  403 (634)
                      ..+....+..........  ..................+....+...+....... +.+...+..+...+...|++++|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         113 AAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccccccccccc--ccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHH
Confidence            667777777666666544  23344445555666677788888888887777654 446678888899999999999999


Q ss_pred             HHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120          404 KVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK  480 (634)
Q Consensus       404 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  480 (634)
                      ..+++..   +.+...|..+...+...|++++|+..+++....+ ..+...+..+...+.+.|++++|...++++.+.  
T Consensus       190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--  266 (388)
T d1w3ba_         190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--  266 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            9998775   3466789999999999999999999999988753 345668888999999999999999999998873  


Q ss_pred             cccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      .+.+...+..+...+...|++++|++.++..  ..+.+...+..+...+...|++++|+..++++++.+|.++.++..++
T Consensus       267 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  346 (388)
T d1w3ba_         267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA  346 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            2334678889999999999999999999987  34566788899999999999999999999999999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHhCC
Q 047120          559 NMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .+|.+.|++++|++.++++.+..
T Consensus       347 ~~~~~~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         347 SVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.4e-14  Score=137.22  Aligned_cols=241  Identities=12%  Similarity=0.013  Sum_probs=160.4

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047120          316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS  394 (634)
Q Consensus       316 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  394 (634)
                      -.....+.+.|++++|+..|+++.+.   .|+ ..+|..+..++...|+++.|...+.++.+.. +-+...+..++.+|.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~   98 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT   98 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence            34566677777777777777777743   443 4566666667777777777777777666643 234555556666666


Q ss_pred             hcCCHHHHHHHHHhccCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120          395 KCGSIENAIKVFEQIEDGSVD---HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      ..|++++|.+.++.+...++.   .+.......                    ...+.......+..+...+.+.+|...
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHH
Confidence            666666666666554321110   000000000                    000000111112233445667778888


Q ss_pred             HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +..+.+.....++...+..+...+...|++++|+..+++. ...|+ ..+|..+...+...|++++|+..++++++.+|.
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  238 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG  238 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence            8877764333445667888888999999999999999887 33444 678888888999999999999999999999999


Q ss_pred             CCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       550 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ++.+|..++.+|.+.|++++|++.|++..+.
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-13  Score=131.02  Aligned_cols=265  Identities=13%  Similarity=0.068  Sum_probs=192.5

Q ss_pred             HHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHc
Q 047120          285 ANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQ  360 (634)
Q Consensus       285 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~  360 (634)
                      -.....+.+.|++++|...|+++.+   .+..+|..+..++...|++++|+..|.+..+.   .|+ ...+..+...+..
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---KPDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc---ccccccccccccccccc
Confidence            3567778999999999999999864   35678999999999999999999999999854   454 5678888889999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120          361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM  440 (634)
Q Consensus       361 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m  440 (634)
                      .|++++|...++.+....... ............                ..+.......+..+...+.+.+|...+.+.
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999988753211 111000000000                001111111223344456677888888887


Q ss_pred             HHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-H
Q 047120          441 ERLSI-EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-D  517 (634)
Q Consensus       441 ~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~  517 (634)
                      .+... .++...+..+...+...|++++|+..++.+....  +.+...|..++..|.+.|++++|++.++++ ...|+ .
T Consensus       163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            76422 2346678888889999999999999999987732  234677889999999999999999999987 44554 6


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch-----------HHHHHHHHhcCCCchHHH
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS-----------YVLLSNMFAGLGMWNDAR  571 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~  571 (634)
                      .+|..++.+|.+.|++++|+..|+++++++|.++..           |..+..++...|+.+.+.
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            789999999999999999999999999998876653           345566666666665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.9e-09  Score=103.74  Aligned_cols=258  Identities=13%  Similarity=0.005  Sum_probs=160.3

Q ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCCCCH------hHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-chhHHH
Q 047120          319 MGGYVRNGYSMKALEIFDNMQCELYLHPDD------ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ----FSL-NGKHGV  387 (634)
Q Consensus       319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~  387 (634)
                      ...+...|++++|+.++++....   .|+.      ..+..+...+...|++++|...++.+.+..    ..+ ....+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~---~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhh---CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            44456667777777777666543   2221      244455556666677777777666655421    111 123344


Q ss_pred             HHHHHhHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHH
Q 047120          388 ALIDMYSKCGSIENAIKVFEQIED-------G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE----PDDITF  452 (634)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----p~~~~~  452 (634)
                      .+...+...|++..+...+.....       +    ....+..+...+...|+++.+...+.........    .....+
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  175 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  175 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence            555666677777777766655431       1    1124555667777788888888887776653211    123355


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-----CHHHHH
Q 047120          453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-----NDVIWR  521 (634)
Q Consensus       453 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~  521 (634)
                      ......+...+++.++...+........-..+     ...+..+...+...|++++|...+++. ...|     ....+.
T Consensus       176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  255 (366)
T d1hz4a_         176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  255 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            55666677778888887777765542211111     233556667777888888888888876 2211     134556


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhcc------CCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120          522 TLLSACRNYENLNVGEPVAKHLIGM------DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       522 ~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      .+..++...|++++|...+++++..      .|.....+..++.+|.+.|++++|.+.+++..+
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6777788888888888888888643      244455778888888888888888888887754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=7.9e-09  Score=99.25  Aligned_cols=285  Identities=10%  Similarity=-0.021  Sum_probs=173.6

Q ss_pred             HHHHHcCChHHHHHHhhhCCC--CC------hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHHHH
Q 047120          289 DGYAKLGRVDIARRLFDEMPK--RD------VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD----ASLVIVLS  356 (634)
Q Consensus       289 ~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~  356 (634)
                      ..+...|++++|++.+++..+  |+      ..++..+...+...|++++|+..|++......-.++.    ..+..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            344555666666655554321  11      1245556666667777777777776665321111221    23444555


Q ss_pred             HHHccCChHHHHHHHHHHHH----cCCCCc---hhHHHHHHHHhHhcCCHHHHHHHHHhccC--------CChhHHHHHH
Q 047120          357 AIAQLGHIDKGVAIHRYLEK----DQFSLN---GKHGVALIDMYSKCGSIENAIKVFEQIED--------GSVDHWNAMI  421 (634)
Q Consensus       357 ~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li  421 (634)
                      .+...|++..+...+.....    .+....   ...+..+...+...|+++.+...+.....        .....+..+.
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            56667777777776665543    111111   23444566777778888888777766541        1233455566


Q ss_pred             HHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc--ChhHHHHHHH
Q 047120          422 NGLAIHGLGELAFDLLMEMERL--SIEPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVD  493 (634)
Q Consensus       422 ~~~~~~~~~~~A~~~~~~m~~~--g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~  493 (634)
                      ..+...++...+...+.+....  .....    ...+..+...+...|++++|...++.........+  ....+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            6777788888888777765432  11111    22455566677888999999999888765222111  1334566788


Q ss_pred             HHhccCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---------CchHHH
Q 047120          494 ILGRAGHIEAARNLIEDM-------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---------SSSYVL  556 (634)
Q Consensus       494 ~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~  556 (634)
                      .+...|++++|...++++       +..|+ ..++..+...+...|++++|.+.+++++++.+..         ...+..
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~  339 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ  339 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence            899999999999888765       33343 3467778888999999999999999998875322         123344


Q ss_pred             HHHHHhcCCCchHHHHH
Q 047120          557 LSNMFAGLGMWNDARRV  573 (634)
Q Consensus       557 l~~~~~~~g~~~~A~~~  573 (634)
                      +...+...++.+++.+-
T Consensus       340 ~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         340 QLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHhcCCChHHHHH
Confidence            45556667777776543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=9.6e-10  Score=100.66  Aligned_cols=219  Identities=12%  Similarity=-0.024  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 047120          329 MKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF  406 (634)
Q Consensus       329 ~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  406 (634)
                      +.++.-+++........++  ..++..+...+.+.|++++|+..|+.+++.. +.++.++..+..+|.+.|++++|+..|
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            4455555555543222221  1345555666677777777777777777653 345677777778888888888888888


Q ss_pred             Hhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcc
Q 047120          407 EQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE  482 (634)
Q Consensus       407 ~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  482 (634)
                      +++.   +.+..++..+..+|...|++++|...|++..+.  .|+ ......+...+.+.+..+.+..+.......   .
T Consensus        95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  169 (259)
T d1xnfa_          95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D  169 (259)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence            7765   234567778888888888888888888888765  343 334334444455555555555554444431   2


Q ss_pred             cChhHHHHHHHHHhccCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 047120          483 PELQHYGCMVDILGRAGH----IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY  554 (634)
Q Consensus       483 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  554 (634)
                      +....++ ++..+.....    .+.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|.+...|
T Consensus       170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            2222222 2233322222    22222222111 12233 34667788888899999999999999999888775444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=6.2e-10  Score=101.98  Aligned_cols=214  Identities=12%  Similarity=0.000  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHHHcCCCC---chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 047120          364 IDKGVAIHRYLEKDQFSL---NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLL  437 (634)
Q Consensus       364 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~  437 (634)
                      .+.++.-++++.......   ...++..+..+|.+.|++++|+..|++..   +.++.+|+.+..+|.+.|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            344555555665432211   23567778899999999999999999876   457789999999999999999999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC
Q 047120          438 MEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP  515 (634)
Q Consensus       438 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  515 (634)
                      +++.+.  .|+ ..++..+..++...|++++|...++...+..  +.+......+...+.+.+..+.+..+.... ...+
T Consensus        95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            999985  555 5688889999999999999999999998742  223444444445555666555555444433 1122


Q ss_pred             CHHHHHHHHHHHH----hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          516 NDVIWRTLLSACR----NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       516 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      +...+.. +..+.    ..+..+.+...+.......|..+.+|..++.+|...|++++|.+.+++..+..+
T Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            2222221 22221    122334444444444444566677899999999999999999999999977654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.2e-09  Score=100.92  Aligned_cols=226  Identities=8%  Similarity=0.077  Sum_probs=175.8

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHHhcc---CCChhHHHHHHHHH
Q 047120          349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG-SIENAIKVFEQIE---DGSVDHWNAMINGL  424 (634)
Q Consensus       349 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~li~~~  424 (634)
                      ..++.+...+.+.+..++|+..++.+++.. +-+...|+....++...| ++++|+..++++.   +.+..+|+.+...+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            456667777788899999999999999974 456678888888888876 5899999999876   45677899999999


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC---
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH---  500 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  500 (634)
                      ...|++++|++.++++.+.  .|+ ...|..+...+.+.|++++|+..++.+.+..  +.+...|+.+..++.+.+.   
T Consensus       123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999985  555 6799999999999999999999999998741  2345667777777666554   


Q ss_pred             ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc--hHHHHHHHHhcC--CCchHHH
Q 047120          501 ---IEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS--SYVLLSNMFAGL--GMWNDAR  571 (634)
Q Consensus       501 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~  571 (634)
                         +++|++.+.++ ...| +...|..+...+.. ...+++...+++++++.|....  .+..++.+|...  +..+.+.
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence               67888888776 4445 56777777766554 4468888999999888876443  556677777543  6777888


Q ss_pred             HHHHHHHhC
Q 047120          572 RVRSMMKER  580 (634)
Q Consensus       572 ~~~~~~~~~  580 (634)
                      ..+++..+.
T Consensus       278 ~~~~ka~~l  286 (315)
T d2h6fa1         278 DILNKALEL  286 (315)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.5e-08  Score=93.43  Aligned_cols=186  Identities=12%  Similarity=0.007  Sum_probs=117.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 047120          363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-S-VDHWNAMINGLAIHGLGELAFDLLM  438 (634)
Q Consensus       363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~A~~~~~  438 (634)
                      ..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++..  + + ...|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3466677777776654455566667777777777777777777776642  1 2 2356777777777777777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CC
Q 047120          439 EMERLSIEPDDITFTGLLNA-CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PM  513 (634)
Q Consensus       439 ~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  513 (634)
                      ++.+.+. .+...|...... +...|+.+.|..+|+.+.+.  .+.+...|...++.+.+.|+++.|..+|++.    +.
T Consensus       159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            7766532 123333333322 23456777777777777663  2334556777777777777777777777765    23


Q ss_pred             CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120          514 EPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS  551 (634)
Q Consensus       514 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  551 (634)
                      .|+  ...|...+..-...|+.+.+..+++++.+..|...
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            332  34666666666667777777777777776666543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.3e-09  Score=96.87  Aligned_cols=224  Identities=8%  Similarity=0.072  Sum_probs=167.8

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120          313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALI  390 (634)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  390 (634)
                      ..++.+...+.+.+.+++|+++++++.+   +.|+. ..|.....++...| ++++|+..++.+++.. +-+..+|..+.
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~---lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            4677788888999999999999999995   46765 56777777777766 5899999999998875 45678899999


Q ss_pred             HHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC---
Q 047120          391 DMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAG---  463 (634)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g---  463 (634)
                      .++.+.|++++|+..++++.   +.+...|..+...+...|++++|++.++++.+.  .|+ ...|+.+...+.+.+   
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence            99999999999999999887   346779999999999999999999999999985  554 557777666655444   


Q ss_pred             ---CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--cCChh
Q 047120          464 ---LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWRTLLSACRN--YENLN  534 (634)
Q Consensus       464 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~--~g~~~  534 (634)
                         .+++|+..+..+.+..  +.+...|..+...+...| .+++.+.++..    +...+...+..++..|..  .++.+
T Consensus       198 ~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~  274 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD  274 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence               3788999888887731  335666777777666544 46666665554    333345666666666543  35555


Q ss_pred             HHHHHHHHHhc
Q 047120          535 VGEPVAKHLIG  545 (634)
Q Consensus       535 ~a~~~~~~~~~  545 (634)
                      .+...++++++
T Consensus       275 ~~~~~~~ka~~  285 (315)
T d2h6fa1         275 NKEDILNKALE  285 (315)
T ss_dssp             SHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=3.2e-10  Score=108.28  Aligned_cols=228  Identities=7%  Similarity=-0.076  Sum_probs=166.1

Q ss_pred             HcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHH-HHHHHHhHhcCCH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLG--HIDKGVAIHRYLEKDQFSLNGKHG-VALIDMYSKCGSI  399 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~  399 (634)
                      ..|.+++|+..++.....   .| +...+..+..++...+  +++.+...+..+.+... .+...+ ......+...+.+
T Consensus        85 ~~~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          85 SAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhcccc
Confidence            345577888888888854   45 4455666666665554  57888888888887643 344443 4455777788999


Q ss_pred             HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120          400 ENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR  476 (634)
Q Consensus       400 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  476 (634)
                      ++|+..++.+..   .+..+|+.+...+...|++++|...+....+.  .|+.   ......+...+..+++...+....
T Consensus       161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHH
Confidence            999999998874   36678888999999999988876655544332  2221   122333445566677777777776


Q ss_pred             HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 047120          477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY  554 (634)
Q Consensus       477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  554 (634)
                      ..  .+++...+..++..+...|++++|...+.+. ...|+ ..+|..++..+...|++++|...++++++++|.++..|
T Consensus       236 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~  313 (334)
T d1dcea1         236 LG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  313 (334)
T ss_dssp             HS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             Hh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence            52  2344556667788888899999999999887 55555 55788888899999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 047120          555 VLLSNMFA  562 (634)
Q Consensus       555 ~~l~~~~~  562 (634)
                      ..|...+.
T Consensus       314 ~~L~~~~~  321 (334)
T d1dcea1         314 DDLRSKFL  321 (334)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98988775

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.8e-08  Score=94.50  Aligned_cols=182  Identities=9%  Similarity=-0.011  Sum_probs=144.9

Q ss_pred             CCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047120          397 GSIENAIKVFEQIE----DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       397 ~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                      +..++|..+|++..    ..+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34577888888764    33566788899999999999999999999987532223457889999999999999999999


Q ss_pred             HHhHHhcCcccChhHHHHHHHH-HhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          473 ELMRRIHKLEPELQHYGCMVDI-LGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +.+.+..  +.+...|...+.. +...|+.+.|..+|+.+  ..+.+...|...+..+.+.|+++.|..+|+++++..|.
T Consensus       158 ~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9998732  2344445444443 34568999999999988  33445778999999999999999999999999998876


Q ss_pred             CCc----hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          550 NSS----SYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       550 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      +|.    .|..++..-...|+.+.+.++.+++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            654    6777788778889999999999998664

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=2.9e-10  Score=108.60  Aligned_cols=246  Identities=7%  Similarity=-0.086  Sum_probs=177.2

Q ss_pred             HcCCchHHHHHHHHHHhcCCCCCCHhH-HHH---HHHHH-------HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120          324 RNGYSMKALEIFDNMQCELYLHPDDAS-LVI---VLSAI-------AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM  392 (634)
Q Consensus       324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~---ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  392 (634)
                      ..+..++|++++++...   ..|+..+ |+.   ++...       ...|.+++|..+++.+.+.. +-+...+..+..+
T Consensus        41 ~~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~  116 (334)
T d1dcea1          41 AGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL  116 (334)
T ss_dssp             TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence            33445899999999884   4677543 322   22222       23445778888888888764 4466666666666


Q ss_pred             hHhcC--CHHHHHHHHHhcc---CCChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCH
Q 047120          393 YSKCG--SIENAIKVFEQIE---DGSVDHWNA-MINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLV  465 (634)
Q Consensus       393 ~~~~~--~~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~  465 (634)
                      +...+  ++++|...+.++.   .++...+.. ....+...+.+++|+..++++.+.  .|+ ...|..+..++...|++
T Consensus       117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCH
Confidence            66655  5889999998875   334555544 446677789999999999998875  454 66888888899999998


Q ss_pred             HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120          466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                      ++|...+....+.   .|+.   ..+...+...+..+++...+...  ..+++...+..++..+...|+..+|...+.++
T Consensus       195 ~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  268 (334)
T d1dcea1         195 PDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL  268 (334)
T ss_dssp             CCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8887666655442   2221   12333445566667777777665  32344556666777778889999999999999


Q ss_pred             hccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       544 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ++.+|.++.++..++.+|...|++++|++.++++.+.+
T Consensus       269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999997653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=3e-08  Score=86.33  Aligned_cols=114  Identities=8%  Similarity=-0.103  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 047120          447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLL  524 (634)
Q Consensus       447 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~  524 (634)
                      |+...+......+.+.|++++|+..|+.+....  +.+...|..++.+|.+.|++++|+..|+++ .+.|+ ..+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            556666666777777777777777777766531  234555666777777777777777777665 45554 55666677


Q ss_pred             HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      .+|...|++++|+..++++++++|.++..+...+..+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            77777777777777777777766655554444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1e-07  Score=74.28  Aligned_cols=104  Identities=12%  Similarity=0.070  Sum_probs=68.6

Q ss_pred             HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCh
Q 047120          456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENL  533 (634)
Q Consensus       456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~  533 (634)
                      ...+...|++++|+..|+.+.+..  +.+...|..+..+|.+.|++++|+..++++ .+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            445666677777777777766531  234555666777777777777777777665 22 33456677777777777777


Q ss_pred             hHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          534 NVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ++|+..++++++.+|.++..+..+..+-
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            7777777777777777777666666554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.4e-08  Score=76.38  Aligned_cols=93  Identities=12%  Similarity=0.123  Sum_probs=84.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120          490 CMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW  567 (634)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  567 (634)
                      .-+..+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            3567789999999999999998 3344 5778999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCC
Q 047120          568 NDARRVRSMMKERNL  582 (634)
Q Consensus       568 ~~A~~~~~~~~~~~~  582 (634)
                      ++|+..+++..+...
T Consensus        88 ~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          88 EEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999976643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.1e-07  Score=79.73  Aligned_cols=123  Identities=10%  Similarity=-0.092  Sum_probs=66.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120          421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH  500 (634)
Q Consensus       421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (634)
                      ...+...|++++|++.|.++    ..|+..+|..+..++...|++++|++.|+++.+..  +.+...|..+..+|.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhcc
Confidence            44455566666666666543    23455556666666666666666666666665521  2234455566666666666


Q ss_pred             HHHHHHHHHhC--CCCC---------------C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120          501 IEAARNLIEDM--PMEP---------------N-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       501 ~~~A~~~~~~~--~~~p---------------~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  549 (634)
                      +++|++.|++.  -.++               + ..++..+..++...|++++|.+.++++++..|.
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            66666655554  1010               0 123334444555555555555555555555553

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.3e-07  Score=76.29  Aligned_cols=146  Identities=5%  Similarity=-0.093  Sum_probs=113.2

Q ss_pred             HHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 047120          390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEG  468 (634)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a  468 (634)
                      ...+...|+++.|++.|+++.++++.+|..+..+|...|++++|++.|++.++.  .|+ ...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence            445678899999999999998888899999999999999999999999999885  565 66889999999999999999


Q ss_pred             HHHHHHhHHhcC-----------cc--cC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 047120          469 LLCFELMRRIHK-----------LE--PE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENL  533 (634)
Q Consensus       469 ~~~~~~~~~~~~-----------~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~  533 (634)
                      +..|+++.....           ..  ++ ..++..+..++.+.|++++|.+.++.+ ...|+.           ..+.+
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~~~  158 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKI  158 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGGHH
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chHHH
Confidence            999998865211           00  11 245667888999999999999999887 555653           33444


Q ss_pred             hHHHHHHHHHhccCC
Q 047120          534 NVGEPVAKHLIGMDS  548 (634)
Q Consensus       534 ~~a~~~~~~~~~~~p  548 (634)
                      +.|+..+++.....|
T Consensus       159 ~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         159 DKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHhhhhCCc
Confidence            566655555544444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.61  E-value=4e-08  Score=75.94  Aligned_cols=90  Identities=14%  Similarity=0.018  Sum_probs=81.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      +-.++..+.+.|++++|+..++++ ...| +..+|..+..++.+.|++++|+..++++++.+|.++.++..++.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            345677889999999999999997 4455 47899999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHH
Q 047120          566 MWNDARRVRSMM  577 (634)
Q Consensus       566 ~~~~A~~~~~~~  577 (634)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999886

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.9e-07  Score=85.09  Aligned_cols=189  Identities=10%  Similarity=-0.019  Sum_probs=117.8

Q ss_pred             HHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 047120          389 LIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLSI---EPD--DITFTG  454 (634)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~  454 (634)
                      ...+|...+++++|.+.|.++.+     .+    ..+|..+..+|.+.|++++|++.+++..+...   .+.  ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            34566677777777777766542     11    23677778888888888888888876553211   111  235666


Q ss_pred             HHHHHh-ccCCHHHHHHHHHHhHHhc---CcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-------CH-HHH
Q 047120          455 LLNACA-HAGLVKEGLLCFELMRRIH---KLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-------ND-VIW  520 (634)
Q Consensus       455 ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~-~~~  520 (634)
                      +...|. ..|++++|+..++.+.+..   +.++. ..++..++..|...|++++|++.++++ ...|       .. ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 4689999999888876522   11111 345777888899999999999998876 1111       11 223


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhccCCCCCch-----HHHHHHHHhc--CCCchHHHHHHHHH
Q 047120          521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS-----YVLLSNMFAG--LGMWNDARRVRSMM  577 (634)
Q Consensus       521 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~~  577 (634)
                      ...+..+...|+++.|...++++.+.+|..+..     ...++.++..  .+.+++|+..|+++
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            444455667899999999999999988754442     3445555544  34577887777544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=9.8e-08  Score=82.99  Aligned_cols=94  Identities=10%  Similarity=-0.076  Sum_probs=62.1

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHH
Q 047120          413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGC  490 (634)
Q Consensus       413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~  490 (634)
                      +...+......|.+.|++++|+..|++.++.  .|+ ...|..+..+|.+.|++++|+..|+.+.+   +.|+ ...|..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~   77 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF   77 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence            3444555666777777777777777776664  343 45667777777777777777777777654   2343 555666


Q ss_pred             HHHHHhccCCHHHHHHHHHhC
Q 047120          491 MVDILGRAGHIEAARNLIEDM  511 (634)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~~  511 (634)
                      ++.+|.+.|++++|+..|+++
T Consensus        78 lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            777777777777777777665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.52  E-value=1.5e-05  Score=72.13  Aligned_cols=177  Identities=8%  Similarity=-0.074  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HhccCCHHHH
Q 047120          398 SIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLNA----CAHAGLVKEG  468 (634)
Q Consensus       398 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~g~~~~a  468 (634)
                      ++..|...+..... .++.....+...+..    .++.+.|...++...+.|..   .....+...    .........+
T Consensus        53 d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a  129 (265)
T d1ouva_          53 NLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKA  129 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             hHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHH
Confidence            44444444444332 233333333333332    34567777777777665432   111222111    2234556667


Q ss_pred             HHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHH
Q 047120          469 LLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVA  540 (634)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~  540 (634)
                      ...+.....    ..+...+..|...|..    ..+...+...++...-..+......+...+..    ..++++|+..|
T Consensus       130 ~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~  205 (265)
T d1ouva_         130 VEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY  205 (265)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             HHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence            777766555    3345556666666654    45667777777766323466666666666654    56899999999


Q ss_pred             HHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCCc
Q 047120          541 KHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       541 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  583 (634)
                      +++.+.+  ++..+..|+.+|.+    ..+.++|.++|++..+.|..
T Consensus       206 ~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         206 SKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            9998876  56788899999875    34788999999999877753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.7e-07  Score=74.99  Aligned_cols=119  Identities=6%  Similarity=-0.055  Sum_probs=95.8

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120          453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNY  530 (634)
Q Consensus       453 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~  530 (634)
                      ......|.+.|++++|+..|+++.+..  +.+...|..+..+|...|++++|+..|+++ .+.|+ ..+|..++.++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            334566888999999999999988742  345777889999999999999999999987 44454 67899999999999


Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHHH--hcCCCchHHHHH
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF--AGLGMWNDARRV  573 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~  573 (634)
                      |++++|...++++++++|.++..+..+..+.  ...+.+++|...
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999888877664  344556666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.7e-06  Score=79.68  Aligned_cols=163  Identities=14%  Similarity=0.020  Sum_probs=91.7

Q ss_pred             HHHHHHHHhHhcCCHHHHHHHHHhccC-----C----ChhHHHHHHHHHHH-cCChHHHHHHHHHHHHC----CCCCC-H
Q 047120          385 HGVALIDMYSKCGSIENAIKVFEQIED-----G----SVDHWNAMINGLAI-HGLGELAFDLLMEMERL----SIEPD-D  449 (634)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~----g~~p~-~  449 (634)
                      +|..+..+|.+.|++++|...+++..+     .    ....+..+...|.. .|++++|++.+++..+.    +..+. .
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            344444445555555555555444321     0    12234455555543 47777777777765431    11111 2


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC------H
Q 047120          450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN------D  517 (634)
Q Consensus       450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~  517 (634)
                      .++..+...+...|++++|..+++.+.......+.     ...+...+..+...|+++.|...+++. .+.|.      .
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~  238 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence            35677788888888888888888887763211111     112344555667788888888888887 43332      2


Q ss_pred             HHHHHHHHHHHh--cCChhHHHHHHHHHhccC
Q 047120          518 VIWRTLLSACRN--YENLNVGEPVAKHLIGMD  547 (634)
Q Consensus       518 ~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~  547 (634)
                      .....++.++..  .+.+++|+..|+++.+++
T Consensus       239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            244556666544  345677777776665554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.3e-07  Score=74.59  Aligned_cols=84  Identities=7%  Similarity=-0.050  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      .+|+.+..+|.+.|++++|+..++++ .+.| +..+|..++.++...|++++|...|+++++++|.++.+...+..+..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35777888999999999999999887 4455 577899999999999999999999999999999999999999988776


Q ss_pred             CCCchH
Q 047120          564 LGMWND  569 (634)
Q Consensus       564 ~g~~~~  569 (634)
                      .+...+
T Consensus       143 ~~~~~~  148 (170)
T d1p5qa1         143 IRRQLA  148 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.8e-07  Score=75.59  Aligned_cols=94  Identities=16%  Similarity=0.100  Sum_probs=84.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG  565 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  565 (634)
                      +...+..|.+.|++++|+..|+++ ...| +...|..+...|...|++++|+..++++++.+|.++.+|..++.+|...|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            334567788999999999999998 4445 47788999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhCC
Q 047120          566 MWNDARRVRSMMKERN  581 (634)
Q Consensus       566 ~~~~A~~~~~~~~~~~  581 (634)
                      ++++|...+++.....
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            9999999999997764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=9.3e-07  Score=68.78  Aligned_cols=107  Identities=12%  Similarity=-0.006  Sum_probs=83.1

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 047120          453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH---IEAARNLIEDM-PMEPND---VIWRTLLS  525 (634)
Q Consensus       453 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~  525 (634)
                      ..+++.+...+++++|.+.|+.+....  +.+..++..+..++.+.++   +++|+++++++ ...|+.   .+|..++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            356677778889999999999888731  3456778888888887554   45689999886 445543   26778888


Q ss_pred             HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      +|.+.|++++|++.|+++++++|.++.+......+.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            999999999999999999999999988776665554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.27  E-value=6.4e-06  Score=68.54  Aligned_cols=92  Identities=9%  Similarity=-0.014  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG  563 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  563 (634)
                      .+|..+..+|.+.|++++|+..++++ .+ +.+..+|..+..++...|++++|+..++++++++|.++.+...+..+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35677888999999999999999987 33 44577899999999999999999999999999999999999998888776


Q ss_pred             CCCch-HHHHHHHHH
Q 047120          564 LGMWN-DARRVRSMM  577 (634)
Q Consensus       564 ~g~~~-~A~~~~~~~  577 (634)
                      .+... ...+.+.+|
T Consensus       145 ~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         145 AKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHH
Confidence            66544 344554444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.2e-06  Score=71.56  Aligned_cols=113  Identities=10%  Similarity=0.022  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY  530 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~  530 (634)
                      .+......+.+.|++++|+..|..+.......+....            ........       .-..+|..+..+|.+.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~-------~~~~~~~nla~~y~k~   75 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQA-------LRLASHLNLAMCHLKL   75 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhch-------hHHHHHHHHHHHHHhh
Confidence            3444555667777777777777776653221111000            00000000       0124677788889999


Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      |++++|+..++++++++|.++.+|..++.+|...|++++|+..|+++.+...
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999977643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.21  E-value=0.0009  Score=59.83  Aligned_cols=224  Identities=9%  Similarity=-0.082  Sum_probs=132.1

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120          312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHGV  387 (634)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  387 (634)
                      +..+..|...+.+.+++++|++.|++..+. |   +...+..|...+..    ..+...+...+....+.+   ++....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            445555566666666677777777666544 2   33344444444443    446666666666666554   222333


Q ss_pred             HHHHHhHh----cCCHHHHHHHHHhccCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047120          388 ALIDMYSK----CGSIENAIKVFEQIEDG-SVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLNA  458 (634)
Q Consensus       388 ~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  458 (634)
                      .+...+..    ..+.+.|...++...+. .......+...+..    ......+...+......   .+...+..+...
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~  151 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence            33333332    34566666666655432 33333333333332    33456667777666653   345556666666


Q ss_pred             Hhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 047120          459 CAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN-  529 (634)
Q Consensus       459 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-  529 (634)
                      +..    ..+...+...++...+    ..+......+...|..    ..++++|...|++....-++..+..|...|.+ 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hccCCCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcC
Confidence            553    4567778888777766    2345555556655554    56899999999887323456677777777765 


Q ss_pred             ---cCChhHHHHHHHHHhccCCC
Q 047120          530 ---YENLNVGEPVAKHLIGMDSS  549 (634)
Q Consensus       530 ---~g~~~~a~~~~~~~~~~~p~  549 (634)
                         ..+.++|.++|+++.+.+..
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCCccCHHHHHHHHHHHHHCcCH
Confidence               44899999999999887743

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.20  E-value=3.4e-06  Score=70.38  Aligned_cols=84  Identities=6%  Similarity=-0.039  Sum_probs=68.8

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120          484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF  561 (634)
Q Consensus       484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  561 (634)
                      ....|..+..+|.+.|++++|+..++++ .+.|+ ...|..++.++...|++++|+..|+++++++|.++.+...+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3456777888899999999999999887 55555 668888999999999999999999999999999988888887776


Q ss_pred             hcCCCc
Q 047120          562 AGLGMW  567 (634)
Q Consensus       562 ~~~g~~  567 (634)
                      .+....
T Consensus       156 ~~l~~~  161 (169)
T d1ihga1         156 QKIKAQ  161 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.9e-06  Score=67.95  Aligned_cols=92  Identities=11%  Similarity=0.087  Sum_probs=73.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch-------HHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS-------YVLLS  558 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~  558 (634)
                      +..++..|.+.|++++|++.|++. .+.| +..++..+..+|.+.|++++|+..++++++++|.++..       |..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            445677888888889988888877 3334 47788888889999999999999999999988877664       44566


Q ss_pred             HHHhcCCCchHHHHHHHHHHh
Q 047120          559 NMFAGLGMWNDARRVRSMMKE  579 (634)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~~~~  579 (634)
                      ..+...+++++|++.+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            667788899999999987754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.1e-06  Score=66.73  Aligned_cols=94  Identities=7%  Similarity=-0.028  Sum_probs=78.6

Q ss_pred             HHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 047120          489 GCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYE---NLNVGEPVAKHLIGMDSSN--SSSYVLLSNMF  561 (634)
Q Consensus       489 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~  561 (634)
                      ..+++.+...+++++|.+.|++. ... .+..++..+..++.+.+   ++++|+.+++++++.+|.+  +.+++.++.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45778888999999999999998 434 45778888999987644   5567999999999988754  45899999999


Q ss_pred             hcCCCchHHHHHHHHHHhCCC
Q 047120          562 AGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       562 ~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+.|++++|+++++++.+...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhhHHHHHHHHHHHHhCc
Confidence            999999999999999987643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.3e-07  Score=91.68  Aligned_cols=108  Identities=7%  Similarity=-0.103  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACR  528 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~  528 (634)
                      .+..+...+.+.|+.++|...+......   .| ...+..+++.+...|++++|...|+++ .+.|+ ...|+.|+..+.
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4444444555555555555544443321   11 233444555555555555555555554 22333 345555555555


Q ss_pred             hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      ..|+..+|+..|.+++...|+.+.++..|+.++.
T Consensus       198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            5555555555555555555555555555555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.11  E-value=1.6e-05  Score=64.73  Aligned_cols=77  Identities=8%  Similarity=-0.053  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120          486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA  562 (634)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  562 (634)
                      .+|..+..+|.+.|++++|++.++++ .+.| +..+|..++.++...|++++|...|+++++++|.++.+...+..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35667777888888888888888776 3344 46678888888888888888888888888888888777766665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.10  E-value=7.3e-06  Score=66.88  Aligned_cols=65  Identities=12%  Similarity=0.059  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|+..|++..+...
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            46777888999999999999999999999999999999999999999999999999999977643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.03  E-value=0.0037  Score=57.10  Aligned_cols=135  Identities=8%  Similarity=0.003  Sum_probs=69.7

Q ss_pred             CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHH
Q 047120           82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI  161 (634)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  161 (634)
                      ||..--..+..-|-+.|.++.|..+|..+..         |..++..+.+.+++..|.++....      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            3443344555566667777777777765443         666666666777777666655432      2455666666


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcC
Q 047120          162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLK  232 (634)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~  232 (634)
                      ..+.+.....-|.- .......+......++..|-..|.+++.+.++...... .++...++.++..|++.+
T Consensus        77 ~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          77 FACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            66666655544322 11111223444456677777777777777777755443 455556666666666644

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.98  E-value=2e-05  Score=65.38  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..|+++.+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            35667788899999999999999999999999999999999999999999999999999987643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.98  E-value=1.1e-05  Score=67.21  Aligned_cols=65  Identities=11%  Similarity=0.017  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      ...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|.+.|++++|++.|+++.+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            45777888889999999999999999999999999999999999999999999999999998754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=3.7e-05  Score=64.14  Aligned_cols=121  Identities=9%  Similarity=-0.107  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH-HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA-ARNLIEDMPMEPNDVIWRTLLSACRN  529 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~p~~~~~~~l~~~~~~  529 (634)
                      ............|++++|...|..+.....-.+-...         ..+.+-. ...-++.    .....+..++.++..
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            3344455677889999999988888763221110000         0011110 0011111    123567788889999


Q ss_pred             cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh-----CCCcc
Q 047120          530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE-----RNLKK  584 (634)
Q Consensus       530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~  584 (634)
                      .|++++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+     .|+.+
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999844     46644

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.83  E-value=4.7e-05  Score=57.97  Aligned_cols=87  Identities=9%  Similarity=-0.035  Sum_probs=45.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120          420 MINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA  498 (634)
Q Consensus       420 li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  498 (634)
                      +...+.+.|++++|+..|++....  .|+ ...|..+..++.+.|++++|+..++.+.+..  +.+...|..++..|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHC
Confidence            344455555555555555555543  333 4455555555555555555555555555421  12244455555555555


Q ss_pred             CCHHHHHHHHHh
Q 047120          499 GHIEAARNLIED  510 (634)
Q Consensus       499 g~~~~A~~~~~~  510 (634)
                      |++++|++.+++
T Consensus        98 g~~~~A~~~l~~  109 (112)
T d1hxia_          98 HNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            555555555543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.82  E-value=0.011  Score=53.80  Aligned_cols=278  Identities=10%  Similarity=-0.016  Sum_probs=120.4

Q ss_pred             CCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 047120          117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV  196 (634)
Q Consensus       117 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~  196 (634)
                      ||..--..+..-|.+.|.++.|..+|..+.         -|..++..+.+.+++..|.+++.+..  +..+|..+...+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~   80 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV   80 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            444444455555556666666666664321         24445555555666666555554332  3445555555555


Q ss_pred             hCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhC
Q 047120          197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM  276 (634)
Q Consensus       197 ~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  276 (634)
                      +.....-|.-.                                   ......++.....++..|...|.+++...+++..
T Consensus        81 ~~~e~~la~i~-----------------------------------~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~  125 (336)
T d1b89a_          81 DGKEFRLAQMC-----------------------------------GLHIVVHADELEELINYYQDRGYFEELITMLEAA  125 (336)
T ss_dssp             HTTCHHHHHHT-----------------------------------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHH-----------------------------------HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            54443322111                                   1111122222233444445555555555555543


Q ss_pred             C---CCChhHHHHHHHHHHHcCChHHHHHHhhhCCC-C----------ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120          277 P---KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK-R----------DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL  342 (634)
Q Consensus       277 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  342 (634)
                      .   ..+...++.++..|++.+. ++-.+.+..... -          ....|..++..|.+.|+++.|+.+.-.   . 
T Consensus       126 ~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~-  200 (336)
T d1b89a_         126 LGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H-  200 (336)
T ss_dssp             TTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S-
T ss_pred             HcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c-
Confidence            2   2334444555555554432 222222222111 0          112344555556666666665554321   1 


Q ss_pred             CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHH
Q 047120          343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN  422 (634)
Q Consensus       343 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~  422 (634)
                        .++.......+..+.+..+.+...++.....+.    ++...+.++......-+..+..+.++               
T Consensus       201 --~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~---------------  259 (336)
T d1b89a_         201 --PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFS---------------  259 (336)
T ss_dssp             --TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHH---------------
T ss_pred             --chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHH---------------
Confidence              233333444455566666666555555544442    23334444444444444444444443               


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047120          423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF  472 (634)
Q Consensus       423 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  472 (634)
                         +.++..-...+++.....|   +....+.+...|...++++.-.+..
T Consensus       260 ---k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         260 ---KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             ---HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence               3444444555555544433   2345666666666666655444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.79  E-value=2.9e-05  Score=63.43  Aligned_cols=64  Identities=14%  Similarity=0.014  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-----------SSSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ..+|+.+..+|...|++++|...+++++++.|..           ...++.++.+|...|++++|++.|++..+.
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567778888888888888888888888764321           225778899999999999999999998654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.2e-06  Score=83.43  Aligned_cols=219  Identities=7%  Similarity=-0.105  Sum_probs=120.9

Q ss_pred             HHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 047120          299 IARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE  375 (634)
Q Consensus       299 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  375 (634)
                      +|.+.|++..+  | ....+..+..++...|++++|   |+++...   .|+...-..+ ........+..+.+.++...
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~-e~~Lw~~~y~~~ie~~r~~~   76 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKV-EQDLWNHAFKNQITTLQGQA   76 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTH-HHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhH-HHHHHHHHHHHHHHHHHHhc
Confidence            56666766653  3 344566677777777777765   6666533   3432111101 11111112445666666666


Q ss_pred             HcCCCCchhHHHH--HHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047120          376 KDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI  450 (634)
Q Consensus       376 ~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  450 (634)
                      +....++..-...  +.......+.++.++..+....+   ++...+..+...+.+.|+.++|...+.+....  .| ..
T Consensus        77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~  153 (497)
T d1ya0a1          77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH  153 (497)
T ss_dssp             SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence            5443333322221  12223345667777777766543   35557788888888999999999888776542  11 34


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 047120          451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSAC  527 (634)
Q Consensus       451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~  527 (634)
                      ++..+...+...|++++|...|+++.+.   .|+ ...|+.|+..+...|+..+|+..|.+.  -.+|...++..|...+
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            7788888999999999999999999874   444 678999999999999999999999887  3356688888888777


Q ss_pred             Hhc
Q 047120          528 RNY  530 (634)
Q Consensus       528 ~~~  530 (634)
                      .+.
T Consensus       231 ~~~  233 (497)
T d1ya0a1         231 SKA  233 (497)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.71  E-value=2.4e-05  Score=62.93  Aligned_cols=44  Identities=11%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      .+++|.+.|+++++++|.++..+..|....       +|.+++.+..+.|+
T Consensus       101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         101 NFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHHSSS
T ss_pred             hHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence            468899999999999999987777776664       56666666666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=5.8e-05  Score=55.33  Aligned_cols=74  Identities=11%  Similarity=-0.007  Sum_probs=56.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120          488 YGCMVDILGRAGHIEAARNLIEDM----P----MEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS  558 (634)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  558 (634)
                      +-.++..+.+.|++++|+..|+++    +    ..++ ..++..|..++.+.|++++|+..++++++++|.++.++..+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            345666677777777777766655    1    1223 457888999999999999999999999999999999888876


Q ss_pred             HHH
Q 047120          559 NMF  561 (634)
Q Consensus       559 ~~~  561 (634)
                      ...
T Consensus        88 ~~~   90 (95)
T d1tjca_          88 YFE   90 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00021  Score=55.78  Aligned_cols=57  Identities=12%  Similarity=-0.053  Sum_probs=31.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120          419 AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR  477 (634)
Q Consensus       419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  477 (634)
                      .+...+.+.|++++|+..|++.++.  .|+ ...+..+..+|.+.|++++|+..++.+.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3444555555556666555555553  232 44555555555556666666655555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.55  E-value=0.00023  Score=57.86  Aligned_cols=95  Identities=12%  Similarity=0.007  Sum_probs=61.2

Q ss_pred             HHhccCCHHHHHHHHHHhHHhcCcccC----------hhHHHHHHHHHhccCCHHHHHHHHHhC--------CCCCC---
Q 047120          458 ACAHAGLVKEGLLCFELMRRIHKLEPE----------LQHYGCMVDILGRAGHIEAARNLIEDM--------PMEPN---  516 (634)
Q Consensus       458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---  516 (634)
                      .+...|++++|+..|+++.....-.|+          ...|+.+..+|...|++++|.+.+++.        ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            444556666666666666543222221          235666777777777777777666654        11222   


Q ss_pred             --HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120          517 --DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS  552 (634)
Q Consensus       517 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  552 (634)
                        ...+..+..+|...|++++|...|++++++.|....
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence              225677888899999999999999999988654433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=2e-05  Score=63.36  Aligned_cols=51  Identities=6%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC-----------chHHHHHHHHHHhCC
Q 047120          531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM-----------WNDARRVRSMMKERN  581 (634)
Q Consensus       531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~  581 (634)
                      +.+++|+..++++++++|.++.+|..++.+|...|+           +++|.+.|++..+..
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            456889999999999999999999999999987654           578888888886554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.44  E-value=0.00013  Score=64.86  Aligned_cols=128  Identities=10%  Similarity=-0.023  Sum_probs=90.8

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHH
Q 047120          425 AIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIE  502 (634)
Q Consensus       425 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  502 (634)
                      .+.|++++|+..+++.++.  .|+ ...+..+...++..|++++|...++.+.+.   .|+ ...+..+...+...+..+
T Consensus         7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence            4568899999999998886  555 568888999999999999999999998773   454 444555555555555555


Q ss_pred             HHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120          503 AARNLIEDM--PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL  557 (634)
Q Consensus       503 ~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  557 (634)
                      ++..-....  ...|+ ...+......+...|+.++|...++++.+..|..+..+...
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~  139 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT  139 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccccc
Confidence            544333322  12343 23444455567889999999999999999999888776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00027  Score=51.62  Aligned_cols=65  Identities=12%  Similarity=-0.093  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120          518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-------SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL  582 (634)
Q Consensus       518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  582 (634)
                      ..+..++..+.+.|++++|+..+++++++.|.+       +.++..|+.+|.+.|++++|++.++++.+...
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            344567888999999999999999999886543       34788999999999999999999999977643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.18  E-value=0.00012  Score=65.26  Aligned_cols=121  Identities=9%  Similarity=0.019  Sum_probs=84.9

Q ss_pred             HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 047120          459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVG  536 (634)
Q Consensus       459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a  536 (634)
                      ..+.|++++|+..+++..+.  -+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            45689999999999999873  2456788999999999999999999999998 55666 44555555555444433333


Q ss_pred             HHHHHHHhcc-CCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120          537 EPVAKHLIGM-DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN  581 (634)
Q Consensus       537 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  581 (634)
                      .......... .|+....+...+..+...|+.++|.+.++++.+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            2222221111 13233345556777889999999999999987654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.0063  Score=50.04  Aligned_cols=120  Identities=11%  Similarity=0.052  Sum_probs=76.8

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChH
Q 047120          354 VLSAIAQLGHIDKGVAIHRYLEKD--QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE  431 (634)
Q Consensus       354 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  431 (634)
                      ........|++++|.+.|...+..  |....            .....+.+...-..+.......+..++..+...|+++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            344567788888888888887763  21100            0000001111111112223456777888888888888


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCcccChhH
Q 047120          432 LAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRR----IHKLEPELQH  487 (634)
Q Consensus       432 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~  487 (634)
                      +|+..++++.+.  .| +...|..++.++...|+..+|++.|+.+.+    ..|+.|+..+
T Consensus        85 ~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          85 AVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            888888888874  45 456888888888888888888888888744    2477777655

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.76  E-value=0.014  Score=42.84  Aligned_cols=141  Identities=9%  Similarity=0.071  Sum_probs=103.2

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120          424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA  503 (634)
Q Consensus       424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  503 (634)
                      +...|..++..+++.+...   ..+..-|+.++--....-+-+...++++.+-+.+.+.              .+++...
T Consensus        12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence            4456888888888888775   2355677777776677777777777777766533322              3344444


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120          504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK  583 (634)
Q Consensus       504 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  583 (634)
                      ....+-.+.  .+...+...+......|.-+.-.+++..+++.+..+|+....++.+|.+.|...++.+++.++=+.|++
T Consensus        75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            444444443  234455666777889999999999999999988899999999999999999999999999999888875

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.61  Score=44.25  Aligned_cols=59  Identities=14%  Similarity=-0.022  Sum_probs=31.3

Q ss_pred             HHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC
Q 047120          288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD  347 (634)
Q Consensus       288 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~  347 (634)
                      +..+.+.++++.....+..-+ .+...-.....+....|+.++|...++.+-..+...|+
T Consensus        79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~  137 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN  137 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT
T ss_pred             HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Confidence            344555666665555443221 23333344555666677777777766666655334443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.99  E-value=0.039  Score=42.46  Aligned_cols=83  Identities=8%  Similarity=-0.051  Sum_probs=50.3

Q ss_pred             cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCchH
Q 047120          498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMWND  569 (634)
Q Consensus       498 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~  569 (634)
                      ..+.++|++.+++....-++.....|...|..    ..+.++|.++++++.+.+  ++.....|+.+|..    ..+.++
T Consensus        36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence            34555566665554212234444444444433    346777888888877654  45667777777765    346778


Q ss_pred             HHHHHHHHHhCCC
Q 047120          570 ARRVRSMMKERNL  582 (634)
Q Consensus       570 A~~~~~~~~~~~~  582 (634)
                      |.+++++..+.|.
T Consensus       114 A~~~~~~Aa~~G~  126 (133)
T d1klxa_         114 AVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCC
Confidence            8888888777665

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.89  Score=43.03  Aligned_cols=351  Identities=9%  Similarity=-0.034  Sum_probs=200.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHH
Q 047120          158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQ  236 (634)
Q Consensus       158 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~  236 (634)
                      ..-+..+.+.++++.....+..-+ .+...-.....+..+.|+..+|.+.+..+-.. ......+..+...+...+.   
T Consensus        76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~---  151 (450)
T d1qsaa1          76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK---  151 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC---
Confidence            334566777888877776664322 24444456677788888888888877665444 2223344445554444333   


Q ss_pred             HHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH
Q 047120          237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN  316 (634)
Q Consensus       237 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  316 (634)
                                 .+...+-.-+......|+...|..++..+...........+........+   ........ .+.....
T Consensus       152 -----------lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~~  216 (450)
T d1qsaa1         152 -----------QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQ  216 (450)
T ss_dssp             -----------SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHH
T ss_pred             -----------CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhhH
Confidence                       22222233356667778888888888877655555555555554433332   33332222 2222222


Q ss_pred             HHHHHHHH--cCCchHHHHHHHHHHhcCCCCCCHhHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120          317 AMMGGYVR--NGYSMKALEIFDNMQCELYLHPDDASL--VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM  392 (634)
Q Consensus       317 ~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  392 (634)
                      .+..++.+  ..+.+.|..++..........++....  ..+.......+..+.+..........+  .+.....-.+..
T Consensus       217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~  294 (450)
T d1qsaa1         217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRM  294 (450)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHH
Confidence            22233322  357788888888877653333332211  112222234566777777777666544  334444445556


Q ss_pred             hHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047120          393 YSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL  469 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  469 (634)
                      ..+.+++..+...++.+...   ......=+..++...|+.+.|...|.....   .++  -|..|...-  .|..-.  
T Consensus       295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~~--Lg~~~~--  365 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQR--IGEEYE--  365 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHHH--TTCCCC--
T ss_pred             HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHHH--cCCCCC--
Confidence            67788999999999988732   233445567888899999999999998864   233  233332211  111000  


Q ss_pred             HHHHHhHHhcCcc--cChh----HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120          470 LCFELMRRIHKLE--PELQ----HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL  543 (634)
Q Consensus       470 ~~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  543 (634)
                           +.. ...+  +...    .-..-+..+...|+...|...+..+....+......+.....+.|.++.|+....++
T Consensus       366 -----~~~-~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         366 -----LKI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             -----CCC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             -----CCc-CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                 000 0000  0000    011335667788999999988877622345566667777788899999999887776


Q ss_pred             h
Q 047120          544 I  544 (634)
Q Consensus       544 ~  544 (634)
                      .
T Consensus       440 ~  440 (450)
T d1qsaa1         440 K  440 (450)
T ss_dssp             T
T ss_pred             H
Confidence            3

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.009  Score=44.63  Aligned_cols=52  Identities=10%  Similarity=0.160  Sum_probs=25.7

Q ss_pred             HHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120          502 EAARNLIEDM-PMEP-ND-VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS  553 (634)
Q Consensus       502 ~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  553 (634)
                      ++++.+++++ ...| +. ..+..|.-+|.+.|++++|.+.++++++.+|.+..+
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            4455555554 1122 22 244444555555555555555555555555555433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.04  E-value=0.14  Score=39.20  Aligned_cols=111  Identities=7%  Similarity=-0.139  Sum_probs=71.7

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEAA  504 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  504 (634)
                      ++++|+++|++..+.|. |.  ....+.  .....+.++|..++++..+ .|   +......|...|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence            56778888888777652 22  222222  2345678888888888776 33   34444555555543    4578889


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047120          505 RNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       505 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p  548 (634)
                      .+.|++.-..-++.....|...|..    ..+.++|.++++++.+++.
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            9988887223345555666666654    4588999999999888764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.18  Score=37.35  Aligned_cols=65  Identities=12%  Similarity=0.030  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCCCC-chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120          516 NDVIWRTLLSACRNY---ENLNVGEPVAKHLIGMDSSNS-SSYVLLSNMFAGLGMWNDARRVRSMMKER  580 (634)
Q Consensus       516 ~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  580 (634)
                      ...+-....+++.+.   .+.++|+.+++.+++.+|.+. +.++.|+.+|.+.|++++|.++++++.+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            333444444444433   234556666666665555442 45566666666666666666666665443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.85  E-value=1.2  Score=32.51  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             hHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120          393 YSKCGSIENAIKVFEQIED-GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC  471 (634)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  471 (634)
                      +.-.|..++..+++.+... .+..-||-+|.-....-+-+...+.++..-+.   .|          ....++.......
T Consensus        12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~C   78 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC   78 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHHH
Confidence            4556888888998888764 45556777776666666666666666665432   11          1234445444444


Q ss_pred             HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120          472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS  548 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  548 (634)
                      +-.+-      .+...+..-++.+..+|+-+.-.++++.+  .-+|++...-.+..+|.+.|+..++-+++.++.+.+-
T Consensus        79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            44332      24455666778888999999988998874  4578888888999999999999999999999887663

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.16  E-value=1.5  Score=30.21  Aligned_cols=63  Identities=11%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120          429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD  493 (634)
Q Consensus       429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  493 (634)
                      +.-++.+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+  ++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            4556677777888888899999999999999999999999999999987544  34557766654