Citrus Sinensis ID: 047148

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIVL
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHccccccccEEcccccEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvmtsspecatmETTILDALHIMhdgkflhlpvidkdggvaACLDVLQITHAAISMCYEwhycnerdltcCFYHLAKALFGIVL
Flexible Loop (DISEMBL)
mvmtsspecATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIVL
Low Complexity Region (SEG)
MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIVL
Disordered region (IsUnstruct)
**********TMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIV*
Disordered Region (DISOPRED)
MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI****************CFYHLAKALFGIVL
Disordered Region (DISEMBL)
********CATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIVL
Disordered Region (DISPRO)
**MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKALFGIVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q9LF97	556	CBS domain-containing pro	yes	no	0.642	0.097	0.836	5e-23
Q9SJQ5	536	CBS domain-containing pro	no	no	0.630	0.098	0.851	5e-22
P0DH79	548	CBS domain-containing pro	no	no	0.630	0.096	0.648	5e-16
Q0WLC7	548	CBS domain-containing pro	no	no	0.630	0.096	0.648	5e-16
Q9FMV3	543	CBS domain-containing pro	no	no	0.428	0.066	0.648	8e-09

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PECA++ETTILDALH MHDGKFLHLP+IDKDG  AAC+DVLQITHAAISM
Sbjct: 301 VMTPNPECASLETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISM 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/54 (85%), Positives = 49/54 (90%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
           VMT +PECA++ETTILDALHIMHDGKFLHLPV DKDG   ACLDVLQITHAAIS
Sbjct: 294 VMTPNPECASIETTILDALHIMHDGKFLHLPVFDKDGFAVACLDVLQITHAAIS 347

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
           VMT +PE AT++  I++ALHIMH+GKFLHLPV+DKDG V A +DV+ ITHAA++
Sbjct: 300 VMTPNPESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVT 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
           VMT +PE AT++  I++ALHIMH+GKFLHLPV+DKDG V A +DV+ ITHAA++
Sbjct: 300 VMTPNPESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVT 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VMT +PE   ++T I++ALHIMH+GKFLHLPV DK+G
Sbjct: 292 VMTQNPESTIVDTPIVEALHIMHEGKFLHLPVTDKEG 328

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
296082621	556	unnamed protein product [Vitis vinifera]	0.642	0.097	0.890	2e-23
225438337	539	PREDICTED: CBS domain-containing protein	0.642	0.100	0.890	2e-23
255574194	546	conserved hypothetical protein [Ricinus	0.642	0.098	0.872	2e-22
297816584	556	CBS domain-containing protein [Arabidops	0.642	0.097	0.854	5e-22
224081072	348	predicted protein [Populus trichocarpa]	0.642	0.155	0.854	6e-22
118489093	555	unknown [Populus trichocarpa x Populus d	0.642	0.097	0.854	6e-22
22136010	469	putative protein [Arabidopsis thaliana]	0.642	0.115	0.836	2e-21
42565877	556	CBS / octicosapeptide/Phox/Bemp1 domain-	0.642	0.097	0.836	2e-21
224093670	488	predicted protein [Populus trichocarpa]	0.642	0.110	0.818	2e-21
242070207	511	hypothetical protein SORBIDRAFT_05g00457	0.642	0.105	0.836	4e-21

>gi|296082621|emb|CBI21626.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/55 (89%), Positives = 54/55 (98%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PECAT+ETTILDALHIMHDGKFLHLPV+DKDGG+AAC+DVLQITHAAISM
Sbjct: 307 VMTPNPECATLETTILDALHIMHDGKFLHLPVVDKDGGIAACVDVLQITHAAISM 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438337|ref|XP_002272502.1| PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/55 (89%), Positives = 54/55 (98%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PECAT+ETTILDALHIMHDGKFLHLPV+DKDGG+AAC+DVLQITHAAISM
Sbjct: 290 VMTPNPECATLETTILDALHIMHDGKFLHLPVVDKDGGIAACVDVLQITHAAISM 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574194|ref|XP_002528012.1| conserved hypothetical protein [Ricinus communis] gi|223532581|gb|EEF34368.1| conserved hypothetical protein [Ricinus communis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/55 (87%), Positives = 52/55 (94%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMTS+PECAT+ETTILDALHIMHDGKFLHLPV+DKDG   AC+DVLQITHAAISM
Sbjct: 298 VMTSNPECATLETTILDALHIMHDGKFLHLPVVDKDGSATACVDVLQITHAAISM 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816584|ref|XP_002876175.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322013|gb|EFH52434.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/55 (85%), Positives = 52/55 (94%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PECA++ETTILDALHIMHDGKFLHLP+IDKDG  AAC+DVLQITHAAISM
Sbjct: 301 VMTPNPECASLETTILDALHIMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISM 355

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081072|ref|XP_002306285.1| predicted protein [Populus trichocarpa] gi|222855734|gb|EEE93281.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/55 (85%), Positives = 52/55 (94%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PEC T+ETTILDALH+MHDGKFLHLPV+DKDG VAACLDVLQITHAAIS+
Sbjct: 214 VMTLNPECVTLETTILDALHVMHDGKFLHLPVVDKDGSVAACLDVLQITHAAISL 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489093|gb|ABK96353.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/55 (85%), Positives = 52/55 (94%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PEC T+ETTILDALH+MHDGKFLHLPV+DKDG VAACLDVLQITHAAIS+
Sbjct: 307 VMTLNPECVTLETTILDALHVMHDGKFLHLPVVDKDGSVAACLDVLQITHAAISL 361

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22136010|gb|AAM91587.1| putative protein [Arabidopsis thaliana] gi|23197824|gb|AAN15439.1| putative protein [Arabidopsis thaliana]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PECA++ETTILDALH MHDGKFLHLP+IDKDG  AAC+DVLQITHAAISM
Sbjct: 214 VMTPNPECASLETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISM 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565877|ref|NP_190863.3| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] gi|334185937|ref|NP_001190074.1| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] gi|75263848|sp|Q9LF97.1|Y3295_ARATH RecName: Full=CBS domain-containing protein CBSCBSPB3 gi|7529719|emb|CAB86899.1| putative protein [Arabidopsis thaliana] gi|332645495|gb|AEE79016.1| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] gi|332645496|gb|AEE79017.1| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PECA++ETTILDALH MHDGKFLHLP+IDKDG  AAC+DVLQITHAAISM
Sbjct: 301 VMTPNPECASLETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISM 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093670|ref|XP_002309952.1| predicted protein [Populus trichocarpa] gi|222852855|gb|EEE90402.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/55 (81%), Positives = 51/55 (92%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT +PEC T+ETT+LDALH+MHDGKFLHLPV+DKDG  AAC+DVLQITHAAISM
Sbjct: 242 VMTPNPECVTLETTVLDALHVMHDGKFLHLPVLDKDGSAAACVDVLQITHAAISM 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242070207|ref|XP_002450380.1| hypothetical protein SORBIDRAFT_05g004570 [Sorghum bicolor] gi|241936223|gb|EES09368.1| hypothetical protein SORBIDRAFT_05g004570 [Sorghum bicolor]

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 52/55 (94%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
           VMT+ P+CAT++TTILDALHIMHDGKFLH+PV+D DG VAACLDVLQITHAAISM
Sbjct: 261 VMTAHPDCATLDTTILDALHIMHDGKFLHIPVLDGDGQVAACLDVLQITHAAISM 315

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.642	0.099	0.592	2.6e-13
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.630	0.079	0.415	9.4e-06
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.642	0.089	0.370	2.8e-05
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.440	0.050	0.5	0.00028

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query:     2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
             VMT +PE   ++T I++ALHIMH+GKFLHLPV DK+G V A +DV+ +THAA++
Sbjct:   292 VMTQNPESTIVDTPIVEALHIMHEGKFLHLPVTDKEGDVVAVVDVIHVTHAAVA 345

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query:     2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54
             VMT  P+ A  + +I  AL  MHDG +L+LPV+++ G +   +DVL++T+A +
Sbjct:   346 VMTPHPDFAPSDMSIQAALRKMHDGHYLNLPVMNEGGEIVGMVDVLKLTYATL 398

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query:     2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
             VMT  P+ A +   + DAL  M DG +L+LPV+  +G +   ++VL++TH  ++
Sbjct:   290 VMTPQPDVAPIGLPVQDALRKMFDGHYLNLPVVANEGDIIGVVEVLKLTHITLN 343

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 91 (37.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:     2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39
             +M++SP C T +T   DAL +M + KF HLPV+  DGG
Sbjct:   134 IMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVS-DGG 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF97	Y3295_ARATH	No assigned EC number	0.8363	0.6428	0.0971	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	2e-22
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-07
pfam00571	57	pfam00571, CBS, CBS domain	6e-07
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	9e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	8e-06
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	1e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-04
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	2e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	5e-04
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	5e-04
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	6e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.001
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.002

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 82.7 bits (205), Expect = 2e-22
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52
           VMT +P CAT +T +L+ALH+M  GKF HLPV+DK G V   LDV ++THA
Sbjct: 63  VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
          +MT +    T + T+ +A+ +M + +F HLPV+D  
Sbjct: 64 IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.8 bits (99), Expect = 6e-07
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
          +MT        +T++ +AL +M +     LPV+D+DG +
Sbjct: 4  IMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKL 42

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.8 bits (101), Expect = 9e-07
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          VMT      + +T++ +A  +M +     LPV+D +G
Sbjct: 63 VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 40.3 bits (95), Expect = 8e-06
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          V+T +P      TTI +AL +M + K  HLPV+D++G
Sbjct: 3  VVTITPT-----TTIAEALELMREHKIRHLPVVDEEG 34

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           +MT        +TTI D   IM       LPV+D  
Sbjct: 83  IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDG 118

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
          VMT+ P     + T+ +AL +M +    HLPV+D  
Sbjct: 62 VMTAPPITIPPDATVFEALLLMLERGIHHLPVVDDG 97

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          VM  +P  A + ++  + L +M +    HLP++D++G
Sbjct: 63 VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEG 99

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          VMT      T +  + +A  +M + +   LPV+D DG
Sbjct: 63 VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +MT  P   + + ++ +A  +M + K   LPV+D  G
Sbjct: 72  IMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQG 108

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +    P   + +T++ +A ++M +     LPV+D++G
Sbjct: 73  LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEG 109

Length = 546

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 35.5 bits (83), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VMT +P+    +    +AL +M + K   LPV+D +G
Sbjct: 64  VMTRNPKTIDPDALAAEALELMEENKITALPVVDDNG 100

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 9  CATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
           A  +T ++D L ++ + +   LP++D++G V
Sbjct: 5  TARPDTPLIDVLDMLVERRVSALPIVDENGKV 36

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 7  PECATMETTILDALHIMHDGKFLHLPVIDKDG 38
              + + T+ +AL +M +     LPV+D DG
Sbjct: 3  VVTVSPDDTVAEALRLMLEHGISGLPVVDDDG 34

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 1  MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           +MT        +T++ DAL +M +     +PV+D  
Sbjct: 3  DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG 39

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.36
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.94
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.87
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.86
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.84
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.79
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.76
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.75
COG3620	187	Predicted transcriptional regulator with C-termina	98.73
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.72
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.72
COG2524	294	Predicted transcriptional regulator, contains C-te	98.72
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.71
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.69
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.68
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.66
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.66
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.66
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.66
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.65
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.65
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.64
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.64
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.64
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.63
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.62
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.62
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.62
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.61
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.61
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.61
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.61
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.6
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.6
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.6
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.6
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.59
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.59
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.59
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.58
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.58
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.58
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.58
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.57
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.57
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.57
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.57
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.56
COG2524	294	Predicted transcriptional regulator, contains C-te	98.56
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.56
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.56
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.55
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.55
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.55
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.55
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.54
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.53
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.53
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.53
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.53
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.53
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.52
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.52
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.52
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.51
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.51
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.51
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.5
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.5
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.5
COG0517	117	FOG: CBS domain [General function prediction only]	98.5
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.49
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.49
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.48
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.46
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.46
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.45
COG4109	432	Predicted transcriptional regulator containing CBS	98.45
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.44
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.44
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.44
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.43
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.43
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.42
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.42
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.42
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.41
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.41
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.39
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.39
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.39
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.38
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.38
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.38
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.38
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.37
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.37
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.37
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.37
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.36
COG2905	610	Predicted signal-transduction protein containing c	98.36
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.36
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.34
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.33
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.32
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.32
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.32
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.32
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.32
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.32
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.32
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.32
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.31
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.31
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.3
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.29
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.28
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.28
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.28
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.28
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.28
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.27
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.27
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.26
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.25
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.25
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.24
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.24
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.23
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.22
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.22
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.2
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.19
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.19
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.19
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.19
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.18
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.18
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.17
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.17
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.16
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.16
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.16
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.15
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.15
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.14
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.13
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.13
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.13
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.12
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.11
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.09
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.09
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.08
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.05
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.03
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.01
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.0
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.99
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.97
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.97
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.95
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.95
COG0517	117	FOG: CBS domain [General function prediction only]	97.92
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.91
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.87
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.83
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.81
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.78
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.73
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.69
COG2905	610	Predicted signal-transduction protein containing c	97.66
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.61
PRK11573	413	hypothetical protein; Provisional	97.58
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.56
PRK11573	413	hypothetical protein; Provisional	97.48
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.48
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.45
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.44
COG4109	432	Predicted transcriptional regulator containing CBS	97.43
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.39
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.26
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.2
COG3620	187	Predicted transcriptional regulator with C-termina	97.07
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.78
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.65
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.66
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.72
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	94.49
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	94.36
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	94.31
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.1
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	94.03
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	93.87
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	92.8
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	90.92
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	90.81
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	89.28
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	88.26
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	84.04
PF05198	76	IF3_N: Translation initiation factor IF-3, N-termi	80.06

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.36  E-value=3e-12  Score=67.60  Aligned_cols=53  Identities=26%  Similarity=0.454  Sum_probs=49.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++.+.|.+++.+++||+|++|+++|+++..+++...
T Consensus         3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            46899999999999999999999999999999999999999999999997754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.94  E-value=3.1e-09  Score=62.30  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|..++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus        60 ~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          60 EVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             heeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            357777789999999999999999999999999998899999999998753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=1.2e-08  Score=60.58  Aligned_cols=49  Identities=24%  Similarity=0.444  Sum_probs=44.6

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|.+++.+++++.++.++++.|.+++.+++||+|++|+++|+|+..++.
T Consensus        73 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          73 IGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             cCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            4667788999999999999999999999999999889999999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.86  E-value=7.8e-09  Score=60.77  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..+++
T Consensus        64 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~  112 (114)
T cd04619          64 VMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL  112 (114)
T ss_pred             HhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence            5677888999999999999999999999999999889999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.84  E-value=1.3e-08  Score=60.44  Aligned_cols=51  Identities=29%  Similarity=0.528  Sum_probs=46.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|.+++..+++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        62 dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          62 DVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            467788889999999999999999999999999998899999999988753

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=3.4e-08  Score=58.42  Aligned_cols=49  Identities=10%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      |..++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus        71 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          71 DFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            4456679999999999999999999999999998899999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.76  E-value=2.3e-08  Score=59.06  Aligned_cols=50  Identities=20%  Similarity=0.397  Sum_probs=45.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          74 IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            56778889999999999999999999999999998899999999998864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=2.8e-08  Score=57.67  Aligned_cols=45  Identities=27%  Similarity=0.301  Sum_probs=41.3

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHH
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITH   51 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~   51 (84)
                      +.++++++++.++++.|.+++.+++||+|++ |+++|+++..++.+
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            5688999999999999999999999999987 89999999988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.73  E-value=1.9e-08  Score=64.13  Aligned_cols=68  Identities=21%  Similarity=0.286  Sum_probs=55.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhhhhhccccchh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLT   69 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~~~~~~~~~~   69 (84)
                      .+|+.+.+.+++++++.++.+.|.+++++++||+++ ++++|-|+-.++........+..+..+.+++|
T Consensus        69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM  136 (187)
T COG3620          69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVM  136 (187)
T ss_pred             hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHh
Confidence            379999999999999999999999999999999995 89999998888877765554444444444433

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.72  E-value=5.4e-08  Score=56.80  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=45.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus        63 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          63 VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            56677788999999999999999999999999998899999999998753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.72  E-value=1.7e-08  Score=69.94  Aligned_cols=53  Identities=17%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +||+++.+++++++++.+|...+.+++++.+||+|++.+++|+++..|+....
T Consensus       249 dIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a  301 (382)
T COG3448         249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA  301 (382)
T ss_pred             HhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc
Confidence            58999999999999999999999999999999999999999999999987743

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.72  E-value=3.9e-08  Score=66.79  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=50.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|.+++++++.+..+.+|++.|..+++..+.|+|.+|+++|+++..|++....
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            579999999999999999999999999999999999999999999999987653

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.71  E-value=5.3e-08  Score=56.48  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++..
T Consensus        58 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          58 VMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            46677889999999999999999999999999998899999999998753

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.69  E-value=6e-08  Score=55.83  Aligned_cols=50  Identities=22%  Similarity=0.385  Sum_probs=45.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus        57 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          57 IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            56777888999999999999999999999999998899999999988763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.68  E-value=1.1e-07  Score=56.77  Aligned_cols=49  Identities=14%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      |.+++.++++++++.++++.|.+++.+++||+|++|+++|+++..++..
T Consensus        77 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          77 KSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            5567789999999999999999999999999998899999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=5.5e-08  Score=57.41  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             CCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHH
Q 047148            2 VMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~   50 (84)
                      +|.+  ++.++++++++.++++.|.+++.+.+||+|++   |+++|+++..++.
T Consensus        63 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          63 IMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             HhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence            4553  57799999999999999999999999999977   6999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=9.4e-08  Score=55.83  Aligned_cols=50  Identities=26%  Similarity=0.404  Sum_probs=43.7

Q ss_pred             CCCCCCeeeeCC--CCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATME--TTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~--~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.+++++  .++.++++.|.+++.+.+||+|++|+++|+++..++++
T Consensus        63 ~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          63 VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            466677788877  68999999999999999999998899999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.66  E-value=1.1e-07  Score=69.90  Aligned_cols=57  Identities=18%  Similarity=0.388  Sum_probs=51.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..++........
T Consensus        72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~  128 (546)
T PRK14869         72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDIL  128 (546)
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhc
Confidence            468888999999999999999999999999999998899999999999987765443

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.66  E-value=6.1e-08  Score=56.30  Aligned_cols=50  Identities=58%  Similarity=0.963  Sum_probs=44.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+++||++++|+++|+++..++++
T Consensus        63 i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          63 VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             hcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            46677788999999999999999999999999998899999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.65  E-value=8.1e-08  Score=56.21  Aligned_cols=49  Identities=14%  Similarity=0.227  Sum_probs=44.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          65 IMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            46677889999999999999999999999999996 99999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.65  E-value=1.6e-07  Score=54.04  Aligned_cols=50  Identities=16%  Similarity=0.191  Sum_probs=44.6

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++..++..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          56 HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            56667778999999999999999999999999998899999999988753

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.64  E-value=1.2e-07  Score=55.54  Aligned_cols=50  Identities=24%  Similarity=0.348  Sum_probs=43.7

Q ss_pred             CCCCCCeeeeC--CCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATM--ETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~--~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+.+..+..  +.++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        62 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            56666677766  999999999999999999999998899999999998754

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=2.3e-07  Score=54.80  Aligned_cols=48  Identities=21%  Similarity=0.442  Sum_probs=43.4

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~   49 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA   49 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence            567899999999999999999999999999899999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=1.2e-07  Score=55.11  Aligned_cols=50  Identities=26%  Similarity=0.345  Sum_probs=44.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        63 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          63 VMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             hccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            46677889999999999999999999999999998899999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.63  E-value=1.6e-07  Score=54.50  Aligned_cols=51  Identities=16%  Similarity=0.347  Sum_probs=45.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +|.+++..+.++.++.++++.|.+++.+.+||+|++|+++|+++..+++..
T Consensus        58 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          58 IMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            466677899999999999999999999999999988999999999998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.62  E-value=1.5e-07  Score=54.66  Aligned_cols=50  Identities=28%  Similarity=0.512  Sum_probs=45.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++...+||+|++|+++|+++..+++.
T Consensus        64 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          64 VMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             hhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            46677788999999999999999999999999998899999999998853

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.62  E-value=1.5e-07  Score=54.22  Aligned_cols=50  Identities=16%  Similarity=0.261  Sum_probs=45.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus        59 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          59 IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            56777889999999999999999999999999998899999999988753

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.62  E-value=1.8e-07  Score=54.73  Aligned_cols=50  Identities=22%  Similarity=0.420  Sum_probs=45.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus        72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          72 IMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            56677889999999999999999999999999998799999999998864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.61  E-value=1.3e-07  Score=64.99  Aligned_cols=52  Identities=21%  Similarity=0.368  Sum_probs=47.8

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|.+++.++.+++++.++++.|.+++...+||+|++|+++|+++..++...
T Consensus       267 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        267 EAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             HhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            4688888899999999999999999999999999988999999999998764

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.61  E-value=1.4e-07  Score=55.17  Aligned_cols=50  Identities=24%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC--CcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD--GGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~--g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++.+.+||+|++  |+++|+++..++..
T Consensus        63 ~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          63 VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            466778899999999999999999999999999977  79999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.61  E-value=2.1e-07  Score=53.85  Aligned_cols=50  Identities=26%  Similarity=0.282  Sum_probs=44.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||++++|++.|+++..++..
T Consensus        60 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          60 IMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            46677889999999999999999999999999998899999999988753

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.61  E-value=2.2e-07  Score=64.46  Aligned_cols=59  Identities=17%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYE   59 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~   59 (84)
                      .+|+++..++.++++..+.+..+.+.+.+++||+|++|+++||++..|++......+.+
T Consensus       319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~  377 (382)
T COG3448         319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQ  377 (382)
T ss_pred             ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence            47998999999999999999999999999999999999999999999998887666544

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=2.2e-07  Score=53.81  Aligned_cols=47  Identities=9%  Similarity=0.100  Sum_probs=42.0

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~   52 (84)
                      ++.+++++.++.++.+.|.+++.+.+||+|++ |+++|+++..|+...
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence            45788999999999999999999999999974 899999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=1.6e-07  Score=54.41  Aligned_cols=49  Identities=20%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|.+++..+.++.++.++++.|.+++.+.+||+|++|+++|+++..++.
T Consensus        61 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          61 VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence            4667788999999999999999999999999999779999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=2.7e-07  Score=53.08  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++..++++.++.++++.|.+++.+.+||+|++|++.|+++..++...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            56788999999999999998999999999988999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.60  E-value=4.5e-07  Score=52.41  Aligned_cols=49  Identities=24%  Similarity=0.437  Sum_probs=43.7

Q ss_pred             CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++++..+++++++.++++.|.+++...+||+|++|++.|+++..++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (110)
T cd04605           1 SRPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA   49 (110)
T ss_pred             CCCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHH
Confidence            3567789999999999999998889999999988999999999998654

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=1.9e-07  Score=54.20  Aligned_cols=49  Identities=20%  Similarity=0.417  Sum_probs=43.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+.+.++.+++++.++++.|.+++...+||+| +|+++|+++..++..
T Consensus        63 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          63 IMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            4666778899999999999999999999999998 589999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.59  E-value=4.1e-07  Score=55.72  Aligned_cols=50  Identities=24%  Similarity=0.205  Sum_probs=44.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +++.++++++++.++++.|.+++...+||+|++|+++|+++..+++....
T Consensus         1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~   50 (133)
T cd04592           1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence            35678999999999999999889999999998899999999999877553

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=1.5e-07  Score=55.45  Aligned_cols=50  Identities=18%  Similarity=0.339  Sum_probs=44.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus        72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          72 IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            45667788999999999999999999999999998899999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.58  E-value=1.9e-07  Score=53.72  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +.++.+++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            568899999999999999999999999998799999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.58  E-value=2e-07  Score=55.04  Aligned_cols=50  Identities=26%  Similarity=0.379  Sum_probs=44.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+.+.+.+||+|++|++.|+|+..++..
T Consensus        75 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          75 IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            46677889999999999999999999999999997799999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.58  E-value=2.4e-07  Score=53.52  Aligned_cols=50  Identities=28%  Similarity=0.423  Sum_probs=44.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+.+.+.+||+|++|++.|+++..++..
T Consensus        61 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          61 VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            46677888999999999999999999999999998899999999988753

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.58  E-value=4.2e-07  Score=44.58  Aligned_cols=45  Identities=22%  Similarity=0.402  Sum_probs=40.4

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +.++.+++++.++.+.|.+++.+.+||+++++++.|+++..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence            467889999999999999999999999998899999999988754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.57  E-value=3e-07  Score=53.08  Aligned_cols=50  Identities=30%  Similarity=0.448  Sum_probs=45.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++.+++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          61 VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            46778889999999999999999999999999998899999999998753

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.57  E-value=2.5e-07  Score=53.04  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=43.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..++.
T Consensus        56 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          56 AMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            56778889999999999999999999999999996 9999999998875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.57  E-value=2.4e-07  Score=53.69  Aligned_cols=49  Identities=14%  Similarity=0.299  Sum_probs=44.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+++.+.+||++ +|++.|+++..+++.
T Consensus        61 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          61 YMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            5677888999999999999999999999999999 789999999998753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.57  E-value=2.6e-07  Score=66.73  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=49.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|.+++.++++++++.++++.|.+++...+||+|++|+++|+++..++.......
T Consensus       199 ~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       199 SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence            36888888999999999999999999999999999999999999999987665443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.56  E-value=2.7e-07  Score=53.23  Aligned_cols=50  Identities=32%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             CCCCCCeeeeC-CCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATM-ETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~-~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+.+..+.+ ++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          59 VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             hcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            46555666666 999999999999999999999998899999999998754

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.56  E-value=2e-07  Score=63.37  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++|+.++...+.+++++..||+|+ ++++|+++..++..+...
T Consensus       176 ~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~  229 (294)
T COG2524         176 NLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN  229 (294)
T ss_pred             hhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc
Confidence            478999999999999999999999999999999995 599999999999877654

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=1.4e-07  Score=56.37  Aligned_cols=40  Identities=13%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHH
Q 047148           12 METTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITH   51 (84)
Q Consensus        12 ~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~   51 (84)
                      +++++.++++.|.+++.+++||+|++ |+++|+|+..++.+
T Consensus        85 ~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          85 ENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            57899999999999999999999986 79999999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.56  E-value=2.2e-07  Score=64.22  Aligned_cols=51  Identities=22%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++++.++.+++++.++++.|.+++++++||+| +|+++|+++..++...
T Consensus       273 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        273 DVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             HhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            46888899999999999999999999999999998 6899999999998764

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.55  E-value=2.5e-07  Score=67.53  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=50.8

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+|++|+++|+|+..++.......
T Consensus       152 diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        152 DVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             HhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            46888999999999999999999999999999999889999999999998766543

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.55  E-value=1.7e-07  Score=54.76  Aligned_cols=44  Identities=14%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +.++.+++++.++++.|.+++.+++||+|++|+++|+++..+++
T Consensus        69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          69 LVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence            45889999999999999999999999999879999999988764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.55  E-value=3e-07  Score=53.25  Aligned_cols=47  Identities=23%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        64 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          64 RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            46778899999999999999999999999998899999999998753

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=3.1e-07  Score=53.29  Aligned_cols=50  Identities=24%  Similarity=0.412  Sum_probs=44.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+.+.++++++++.++++.|.+.+.+.+||++++|++.|+++..++..
T Consensus        63 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          63 VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             hccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            56677889999999999999999999999999998799999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.54  E-value=2.3e-07  Score=68.11  Aligned_cols=53  Identities=26%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++  ++.+++++.++.++++.|.+++++.+||+|++|+++|+|+..|+....
T Consensus       165 dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        165 DFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            36775  667899999999999999999999999999889999999999997764

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=3.8e-07  Score=53.65  Aligned_cols=50  Identities=26%  Similarity=0.358  Sum_probs=44.6

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+.+.+.+||+|++|+++|+++..+++.
T Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          72 VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            46667889999999999999999999999999998799999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.53  E-value=3.1e-07  Score=66.99  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=50.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|++++.++++++++.++++.|.+++.+++||+|++|+++|+|+..|+.......
T Consensus       150 dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       150 DIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            46888999999999999999999999999999999889999999999998765543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.53  E-value=4e-07  Score=53.10  Aligned_cols=49  Identities=16%  Similarity=0.278  Sum_probs=44.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+++..++..
T Consensus        56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            4777888999999999999999999999999996 789999999998753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.53  E-value=9.1e-07  Score=53.06  Aligned_cols=49  Identities=20%  Similarity=0.381  Sum_probs=44.2

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.+++++.++.++++.|.+++...+||+|++|+++|+++..++....
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~   50 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSL   50 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            4678899999999999999999999999999889999999999987644

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=2.5e-07  Score=53.74  Aligned_cols=49  Identities=20%  Similarity=0.345  Sum_probs=43.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          65 IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            46667889999999999999999999999999996 89999999998853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.52  E-value=4.1e-07  Score=52.62  Aligned_cols=50  Identities=22%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..++++.++.++++.|.+.+.+.+||++++|++.|+++..++..
T Consensus        60 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          60 VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            45667789999999999999999999999999998799999999988753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=4.3e-07  Score=52.46  Aligned_cols=49  Identities=27%  Similarity=0.499  Sum_probs=43.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.+++++.++.++++.|.+.+.+.+||+++ |+++|+++..++..
T Consensus        64 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          64 IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            46677789999999999999999999999999996 99999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=4.8e-07  Score=53.31  Aligned_cols=50  Identities=20%  Similarity=0.399  Sum_probs=45.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+++...+||+|++|+++|+++..+++.
T Consensus        72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          72 IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            46677889999999999999999999999999998899999999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.51  E-value=3.7e-07  Score=52.96  Aligned_cols=49  Identities=24%  Similarity=0.352  Sum_probs=44.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus        62 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          62 IVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            46777889999999999999999999999999997 89999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.51  E-value=4.4e-07  Score=52.53  Aligned_cols=50  Identities=28%  Similarity=0.457  Sum_probs=45.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|...+.+.+||+|+ +|+++|+++..++..
T Consensus        63 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          63 IMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             hccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            57778889999999999999999999999999997 789999999988753

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.51  E-value=3.8e-07  Score=52.83  Aligned_cols=49  Identities=29%  Similarity=0.534  Sum_probs=44.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+++.+.+||+++ |+++|+++..++..
T Consensus        62 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          62 VMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            46677889999999999999999999999999996 89999999998753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=7.7e-07  Score=51.40  Aligned_cols=48  Identities=15%  Similarity=0.224  Sum_probs=42.7

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++..++++.++.++.+.|.+++.+.+||+|++++++|+++..++....
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~   49 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKV   49 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHH
Confidence            467789999999999999988899999999889999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=5.2e-07  Score=54.93  Aligned_cols=49  Identities=20%  Similarity=0.377  Sum_probs=43.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+++..++..
T Consensus        86 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          86 IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            56777789999999999999999999999999986 89999999988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.50  E-value=2.7e-07  Score=55.57  Aligned_cols=49  Identities=16%  Similarity=0.327  Sum_probs=44.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.++.++.++++.|.+++.+.+||+| +|+++|+++..++..
T Consensus        86 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          86 VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4667788999999999999999999999999999 899999999988753

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.50  E-value=4.9e-07  Score=52.62  Aligned_cols=48  Identities=31%  Similarity=0.488  Sum_probs=43.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHh-CCCCEeEEEcCCC-cEEEEEEHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHD-GKFLHLPVIDKDG-GVAACLDVLQI   49 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~-~~~~~ipVvd~~g-~l~Giv~~~~i   49 (84)
                      +|++++.++.++.++.++.+.|.+ ++.+.+||+|+++ +++|+++..++
T Consensus        67 v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          67 VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence            577778899999999999999999 7999999999885 99999998875

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.49  E-value=5.5e-07  Score=51.97  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+.+.+++++.++.++++.|.+++.+.+||+| +|+++|+++..++..
T Consensus        55 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          55 YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            4667788999999999999999999999999998 689999999998753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.49  E-value=3.2e-07  Score=67.43  Aligned_cols=53  Identities=19%  Similarity=0.364  Sum_probs=48.4

Q ss_pred             CCCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+++..++....
T Consensus       250 ~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        250 YIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             HhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence            4688 8899999999999999999999999999999999999999999987643

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=6.3e-07  Score=51.97  Aligned_cols=50  Identities=18%  Similarity=0.358  Sum_probs=44.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++...+||+|++|++.|+++..++..
T Consensus        62 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          62 IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            56777889999999999999999888999999998899999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=5e-07  Score=53.08  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=44.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++..
T Consensus        72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          72 IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             HccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            46677889999999999999999999999999997 99999999998863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.46  E-value=1.3e-06  Score=50.14  Aligned_cols=49  Identities=24%  Similarity=0.369  Sum_probs=43.0

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++....
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~   49 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS   49 (106)
T ss_pred             CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence            3567889999999999999888899999999889999999999987643

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=7.6e-07  Score=53.42  Aligned_cols=49  Identities=29%  Similarity=0.382  Sum_probs=43.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++..
T Consensus        83 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          83 IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            46677888999999999999999999999999997 99999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.45  E-value=6.9e-07  Score=63.19  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|+++|.++.+.++++.+.++|.=.+++.+||+|++.+++|++++.|++.+..
T Consensus       254 VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         254 VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence            69999999999999999999999888999999999999999999999887764

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=1.1e-06  Score=51.42  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=42.0

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +.++++++++.++.+.|.+++.+.+||+|++|++.|+++..++....
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~   49 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQM   49 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHH
Confidence            46788999999999999999999999999999999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=8.2e-07  Score=51.47  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+++.+.+||+|++ +++|+++..+++.
T Consensus        63 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          63 VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            466777889999999999999999999999999864 9999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=5.2e-07  Score=52.53  Aligned_cols=48  Identities=27%  Similarity=0.409  Sum_probs=41.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++++++++.++++.|.+.+  .+||+|++|+++|+++..+++.
T Consensus        68 ~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          68 VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            46677889999999999999998754  5999998899999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=2e-06  Score=50.67  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=43.6

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++.++++++++.++.+.|..++...+||+|++|+++|+++..++.....
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~   50 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence            4678999999999999999888999999998899999999999877553

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.43  E-value=6.5e-07  Score=61.87  Aligned_cols=52  Identities=10%  Similarity=0.077  Sum_probs=45.8

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++...
T Consensus       206 dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~  259 (326)
T PRK10892        206 DIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRV  259 (326)
T ss_pred             HHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHH
Confidence            46776  78899999999999999998888888888988999999998888653

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.6e-06  Score=50.62  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=42.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~   52 (84)
                      +++.+++++.++.++++.|.+++.+.+||+|++ |+++|+++..++...
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~   49 (114)
T cd04630           1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKK   49 (114)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHH
Confidence            356789999999999999998899999999987 899999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.42  E-value=8.8e-07  Score=51.35  Aligned_cols=49  Identities=16%  Similarity=0.224  Sum_probs=43.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+++++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus        62 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          62 IATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            46677889999999999999999999999999985 89999999988753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.42  E-value=1.8e-06  Score=50.84  Aligned_cols=49  Identities=16%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~   49 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH   49 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhh
Confidence            3567889999999999999998889999999988999999999998654

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.41  E-value=2.2e-06  Score=50.03  Aligned_cols=49  Identities=22%  Similarity=0.361  Sum_probs=43.4

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.++++++++.++.+.|.+.+...+||+|++|+++|+++..++....
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~   49 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRAL   49 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            3567889999999999999988899999999889999999999987644

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=2.1e-06  Score=49.91  Aligned_cols=48  Identities=19%  Similarity=0.320  Sum_probs=42.7

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.++++++++.++.+.|.+++.+.+||+|++|+++|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~   49 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL   49 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence            457889999999999999999999999999889999999999986543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.39  E-value=9.4e-07  Score=60.83  Aligned_cols=51  Identities=12%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             CCCCCC--CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~--~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|.++  +.++++++++.++.+.|.+++...+||+|++|+++|+++..++..
T Consensus       201 ~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~  253 (321)
T PRK11543        201 HLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRR  253 (321)
T ss_pred             HHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHH
Confidence            368777  889999999999999998888899999999999999999888764

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=2.1e-06  Score=51.22  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            4678899999999999999888999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=2.7e-06  Score=49.23  Aligned_cols=48  Identities=19%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~   48 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRA   48 (112)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHH
Confidence            356788999999999999988889999999988999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=2.6e-06  Score=50.64  Aligned_cols=47  Identities=15%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~   48 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDF   48 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence            45678999999999999999999999999988999999998887643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.38  E-value=2.4e-06  Score=49.40  Aligned_cols=49  Identities=16%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.+++++.++.++.+.|.+++...+||+|++|++.|+++..++....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~   49 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL   49 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence            3567889999999999999988889999999889999999999987543

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=1.2e-06  Score=52.07  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEc--CCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVID--KDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd--~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.+++++.++.++++.|.+++.+.+||++  ++|+++|+|+..+++.
T Consensus        76 ~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          76 AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            5777788999999999999999998899999984  4689999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.38  E-value=2.4e-06  Score=49.82  Aligned_cols=48  Identities=10%  Similarity=0.133  Sum_probs=41.5

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCC-CCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGK-FLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~-~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++.+.|.+++ ...+||+|++|+++|+++..++....
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~   50 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP   50 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH
Confidence            5678899999999999887664 88999999889999999999987654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.37  E-value=1.4e-06  Score=64.45  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC--CcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD--GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~--g~l~Giv~~~~i~~~~~   54 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|+++..|+.+...
T Consensus       516 dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        516 DYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             HhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            4677888899999999999999999999999999876  48999999999987653

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.7e-06  Score=51.54  Aligned_cols=48  Identities=19%  Similarity=0.358  Sum_probs=43.1

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      .+.+++++.++.++++.|.+++...+||+|++|+++|+++..+++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~   49 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL   49 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence            457889999999999999988999999999889999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.37  E-value=2.3e-06  Score=49.96  Aligned_cols=47  Identities=11%  Similarity=0.199  Sum_probs=41.9

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI   48 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence            45788999999999999998889999999988999999999998653

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.37  E-value=1.4e-06  Score=64.07  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=48.8

Q ss_pred             CCCCC--CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~~--~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +|+++  ..++++++++.++++.|.+++.+.+||+|++++++|+|+..++......
T Consensus       168 IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        168 VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            57765  6799999999999999999999999999989999999999999877754

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.36  E-value=2.3e-06  Score=51.51  Aligned_cols=48  Identities=23%  Similarity=0.367  Sum_probs=43.2

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +++.++.++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~   49 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRR   49 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHH
Confidence            567788999999999999999999999999988999999999998654

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.36  E-value=1.8e-06  Score=63.87  Aligned_cols=79  Identities=22%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-----hhhhhhccccchhhhHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-----CYEWHYCNERDLTCCFYHL   75 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~   75 (84)
                      ++|+.++.++..++.+.+|+-+|.+++++++||.+ +|+++|+++..|++......     ..-.+....+++-.|.+-+
T Consensus       218 evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~sI~el~~~~e~~  296 (610)
T COG2905         218 EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQNSIVLVKRIARASSIEELANTAELL  296 (610)
T ss_pred             hhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCCceeehHHhhhhhhHHHHHHHHHHH
Confidence            48999999999999999999999999999999997 79999999999987765421     1223444447777777666


Q ss_pred             HHHHh
Q 047148           76 AKALF   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      .+.+-
T Consensus       297 ~~~~s  301 (610)
T COG2905         297 DDSLS  301 (610)
T ss_pred             HHHHH
Confidence            55543

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.36  E-value=1.3e-06  Score=51.11  Aligned_cols=49  Identities=18%  Similarity=0.292  Sum_probs=43.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus        72 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          72 IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            45667788999999999999999999999999986 89999999988753

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=1.9e-06  Score=48.93  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=44.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|..++..+.++.++.++.+.|.+.+.+.+||+|++|++.|+++..++..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          63 VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            45667788899999999999999999999999998899999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=4.1e-06  Score=49.54  Aligned_cols=48  Identities=15%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~   53 (84)
                      ++.++++++++.++++.|.+++.+.+||+|++ |+++|+++..++....
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~   50 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFL   50 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHH
Confidence            46788999999999999998889999999987 8999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=3.9e-06  Score=48.60  Aligned_cols=48  Identities=17%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++..++++.++.++.+.|.+++.+.+||+|++|++.|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   49 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD   49 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH
Confidence            467889999999999999988899999999889999999999986543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.32  E-value=5e-06  Score=47.70  Aligned_cols=48  Identities=27%  Similarity=0.410  Sum_probs=42.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +++..++++.++.++.+.|.+++...+||+|++|+++|+++..++...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~   49 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQA   49 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHH
Confidence            456788999999999999998889999999988999999999998654

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.32  E-value=3.8e-06  Score=48.38  Aligned_cols=49  Identities=16%  Similarity=0.316  Sum_probs=43.0

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +++..++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..++.....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~   49 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPA   49 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHh
Confidence            46778999999999999999888899999997 99999999999876543

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=3.4e-06  Score=48.89  Aligned_cols=48  Identities=19%  Similarity=0.296  Sum_probs=42.3

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~   48 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQ   48 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHH
Confidence            356788999999999999988888899999988999999999888754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.32  E-value=5.5e-07  Score=54.01  Aligned_cols=51  Identities=6%  Similarity=-0.046  Sum_probs=42.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHH---------hCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMH---------DGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~---------~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.++++++++.++.+.+.         +.+.+++||+|++|+++|+++..|++.
T Consensus        63 ~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~  122 (124)
T cd04608          63 KALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS  122 (124)
T ss_pred             HHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence            368888899999999999998653         335788899998899999999999865

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.32  E-value=2.4e-06  Score=61.35  Aligned_cols=52  Identities=23%  Similarity=0.353  Sum_probs=47.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..++...
T Consensus       339 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~  390 (454)
T TIGR01137       339 DLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA  390 (454)
T ss_pred             HhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            4688888999999999999999998889999999988999999999998764

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.32  E-value=4.7e-06  Score=48.13  Aligned_cols=49  Identities=16%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      ++.+++++.++.++.+.|.+++...+||+|++ |+++|+++..++.....
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~   51 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA   51 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence            46788999999999999998889999999988 99999999988876543

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=2.7e-06  Score=49.95  Aligned_cols=48  Identities=23%  Similarity=0.386  Sum_probs=42.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            356788999999999999998888999999988999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=3.5e-06  Score=49.67  Aligned_cols=48  Identities=25%  Similarity=0.362  Sum_probs=42.4

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++++.|.+.+.+.+||+|++ |++.|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~   50 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL   50 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHh
Confidence            56788999999999999998888999999987 9999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=3.6e-06  Score=48.66  Aligned_cols=47  Identities=23%  Similarity=0.242  Sum_probs=41.7

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.++++++++.++.+.|.+.+...+||+|++|++.|+++..++...
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~   48 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRA   48 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHH
Confidence            46778999999999999988888999999988999999999988654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=3.8e-06  Score=49.33  Aligned_cols=48  Identities=25%  Similarity=0.433  Sum_probs=42.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.++.++.++.++.+.|.+.+.+.+||+|++|+++|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~   49 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHh
Confidence            467889999999999999999999999999889999999999987644

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.7e-06  Score=48.96  Aligned_cols=49  Identities=22%  Similarity=0.468  Sum_probs=43.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus        57 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          57 LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             HhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            46677788999999999999999999999999984 79999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=4.4e-06  Score=50.80  Aligned_cols=48  Identities=15%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++++.|.+++...+||+|++|+++|+++..+++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~   49 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE   49 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHh
Confidence            456789999999999999988899999999889999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.28  E-value=6.8e-06  Score=47.39  Aligned_cols=48  Identities=19%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++..++++.++.++.+.|.+++.+.+||+|+ |++.|+++..++....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~   48 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAI   48 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHH
Confidence            35678899999999999999888999999997 9999999999987654

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.28  E-value=4.4e-06  Score=48.28  Aligned_cols=47  Identities=15%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      .++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++..++..
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~   48 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG   48 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc
Confidence            35678899999999999999888889999998899999999988864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=5.8e-06  Score=47.89  Aligned_cols=47  Identities=21%  Similarity=0.346  Sum_probs=42.0

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++..+.+++++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~   48 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY   48 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence            35778999999999999999899999999988999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=3.8e-06  Score=50.37  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=42.7

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++....
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~   49 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKI   49 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHH
Confidence            567889999999999999888889999999889999999999886544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.28  E-value=2.2e-06  Score=57.43  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             CCCCCC-CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSS-PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~-~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|.++ +.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++...
T Consensus       159 ~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~  211 (268)
T TIGR00393       159 DLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRA  211 (268)
T ss_pred             HHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence            468777 8899999999999999998889999999988999999998888654

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.27  E-value=3.1e-06  Score=61.87  Aligned_cols=50  Identities=16%  Similarity=0.231  Sum_probs=46.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      ++|.+++.+++++.++.++.+.|.+++...+||+|++++++|+|+..|+.
T Consensus        93 ~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~  142 (479)
T PRK07807         93 DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA  142 (479)
T ss_pred             cccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh
Confidence            46888999999999999999999999999999999899999999988874

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.27  E-value=2.1e-06  Score=57.59  Aligned_cols=45  Identities=27%  Similarity=0.414  Sum_probs=41.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEE
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLD   45 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~   45 (84)
                      ++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+
T Consensus       224 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       224 DFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            367788889999999999999999999999999998899999983

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.26  E-value=2.8e-06  Score=62.91  Aligned_cols=52  Identities=15%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      |+|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+++..|+...
T Consensus       451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~  502 (574)
T PRK01862        451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSD  502 (574)
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHH
Confidence            4688888899999999999999999999999999999999999999998763

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.25  E-value=3.7e-06  Score=49.16  Aligned_cols=50  Identities=12%  Similarity=0.136  Sum_probs=41.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCC---EeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFL---HLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~---~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..+.+++++.++++.|.+++..   ..||++++|+++|+++..++..
T Consensus        66 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          66 VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            5777888999999999999999877653   3468888899999999988753

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=1.1e-05  Score=45.70  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=43.6

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++.+++++.++.++.+.|.+++.+.+||+|++++++|+++..++......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~   51 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE   51 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence            45678899999999999998888999999988999999999998766543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.24  E-value=2.4e-06  Score=62.62  Aligned_cols=53  Identities=15%  Similarity=0.291  Sum_probs=47.8

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++  ++.+++++.++.++.+.|.+++.+.+||+|++++++|+|+..++....
T Consensus       163 diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        163 EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            35776  778999999999999999999999999999999999999999987664

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.24  E-value=3.1e-06  Score=61.30  Aligned_cols=52  Identities=25%  Similarity=0.439  Sum_probs=47.7

Q ss_pred             CCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|+ +++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..+++...
T Consensus       148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            566 4788999999999999999999999999999999999999999998765

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.23  E-value=6.5e-06  Score=48.15  Aligned_cols=47  Identities=32%  Similarity=0.472  Sum_probs=41.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA   48 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHH
Confidence            46788999999999999988888899999988999999999887653

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.22  E-value=8.2e-06  Score=47.53  Aligned_cols=47  Identities=26%  Similarity=0.513  Sum_probs=41.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~   48 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLAS   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhh
Confidence            4678899999999999999888999999997 9999999999987654

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=9.7e-06  Score=47.63  Aligned_cols=46  Identities=17%  Similarity=0.265  Sum_probs=41.0

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++..++++.++.++.+.|.+++++.+||+|+ |+++|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKA   47 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHH
Confidence            4678899999999999999888999999996 999999999988653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.20  E-value=5e-06  Score=57.27  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +++.+++++.++.++++.|.+++.+.+||+|+.|.++|+|+..|++......+
T Consensus       140 r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei  192 (292)
T PRK15094        140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI  192 (292)
T ss_pred             CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence            34568999999999999999999999999998899999999999988876543

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.19  E-value=6.5e-06  Score=60.16  Aligned_cols=51  Identities=22%  Similarity=0.349  Sum_probs=46.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|.+++.+++++.++.++.+.|.+++.+.+||+|++++++|+++..++..
T Consensus        91 dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~  141 (486)
T PRK05567         91 SGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF  141 (486)
T ss_pred             hcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence            467888999999999999999999999999999999999999999999853

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.19  E-value=1.1e-05  Score=46.52  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=41.5

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++...
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~   47 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNR   47 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence            45678899999999999998888899999997 999999999998653

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.19  E-value=1e-05  Score=46.40  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=41.6

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~   48 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDAL   48 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHH
Confidence            4568899999999999999989999999997 9999999999887653

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.19  E-value=1.1e-05  Score=46.85  Aligned_cols=47  Identities=21%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~   49 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRA   49 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHH
Confidence            45788999999999999998889999999988999999998887653

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.18  E-value=7.4e-06  Score=50.04  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=43.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|.+++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..+++
T Consensus        94 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~  141 (143)
T cd04634          94 IMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDII  141 (143)
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhh
Confidence            46677889999999999999999999999999997 8999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.18  E-value=1.5e-05  Score=46.01  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=42.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.+++++.++.++.+.|.+++...+||+|+ |+++|+++..++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~   49 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL   49 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence            46678899999999999998888889999997 9999999999886543

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=1.2e-05  Score=46.53  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=40.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +++.++++++++.++.+.|.+++.+.+||+|+ |++.|+++..++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~   45 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIV   45 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHH
Confidence            35678899999999999999888999999997 9999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.17  E-value=1.7e-05  Score=45.88  Aligned_cols=47  Identities=21%  Similarity=0.155  Sum_probs=41.2

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++..++++.++.++.+.|.+++...+||+|+ |++.|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~   48 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHH
Confidence            4678899999999999999888889999997 8999999999987543

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.16  E-value=6.1e-06  Score=60.00  Aligned_cols=56  Identities=13%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|.+.+..+.++++.+++.+.+.+++.-.+||+|++++++|+++..|+......+
T Consensus       200 ~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         200 DLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             HHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence            46888889999999999999999999999999999999999999999876665444

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.16  E-value=5.9e-06  Score=47.42  Aligned_cols=48  Identities=15%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|.+++..++++.++.++.+.|.+. . .+||++++|+++|+++..++..
T Consensus        62 ~~~~~~~~v~~~~~l~~~~~~~~~~-~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          62 VMGEPLPTVDPDAPIEELSELLDRG-N-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HhcCCCceeCCCCcHHHHHHHHHhC-C-ceeEEecCCeEEEEEeHHHhhc
Confidence            4666778899999999999999873 3 4788988899999999998754

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.16  E-value=8.2e-06  Score=56.22  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=46.3

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~   52 (84)
                      ++|++  ++.+++++.+++++.+.+.+++.+.+||++++ ++++|+++.++++..
T Consensus        71 diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~  125 (292)
T PRK15094         71 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF  125 (292)
T ss_pred             EEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence            47887  57899999999999999999999999999875 789999999998753

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.15  E-value=1e-05  Score=49.42  Aligned_cols=48  Identities=23%  Similarity=0.365  Sum_probs=42.3

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.++++++++.++.+.|.+.+...+||+|+ |+++|+++..++....
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~   48 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLL   48 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHH
Confidence            35678999999999999999888999999997 9999999999986543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.15  E-value=7.1e-06  Score=59.93  Aligned_cols=52  Identities=31%  Similarity=0.483  Sum_probs=47.4

Q ss_pred             CCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|+ +++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus       152 im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        152 VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence            566 6778999999999999999999999999999999999999999997664

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.14  E-value=1.9e-05  Score=45.36  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~   48 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLL   48 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHH
Confidence            4567899999999999999888889999986 8999999999987654

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=1.8e-05  Score=46.29  Aligned_cols=47  Identities=21%  Similarity=0.286  Sum_probs=41.5

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++..+.++.++.++.+.|.+++.+.+||+|+ |+++|+++..++....
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~   48 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADAL   48 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhh
Confidence            5678899999999999998888999999996 9999999999887543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.13  E-value=1.3e-05  Score=46.03  Aligned_cols=46  Identities=24%  Similarity=0.423  Sum_probs=41.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +++..+.++.++.++.+.|.+++...+||+|++|++.|+++..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~   47 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR   47 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee
Confidence            4567889999999999999888889999999889999999988865

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.13  E-value=1.3e-05  Score=46.72  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=41.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH   51 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~   51 (84)
                      .++.++++++++.++++.|.+++...+||+|+   +|+++|+++..++..
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            35678899999999999998888889999997   689999999888764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.12  E-value=1.6e-05  Score=45.31  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=40.1

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++..+++++++.++++.|.+++.+.+||+| +|+++|+++..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~   46 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRR   46 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhc
Confidence            567889999999999999888888999998 689999999998865

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.11  E-value=2.8e-05  Score=44.91  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=40.6

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~   47 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALR   47 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence            4677899999999999998888889999997 999999999998643

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.09  E-value=1.3e-05  Score=58.05  Aligned_cols=51  Identities=24%  Similarity=0.363  Sum_probs=46.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~   51 (84)
                      +.|.+++.+++++.++.++++.|.+++++.+||+|++   ++++|+++.+++..
T Consensus        84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~  137 (450)
T TIGR01302        84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF  137 (450)
T ss_pred             CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence            3567788999999999999999999999999999987   79999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.09  E-value=2e-05  Score=46.01  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCC-CCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGK-FLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~-~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.++++++++.++.+.|...+ .+.+||+|+ |++.|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~   48 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMEL   48 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHH
Confidence            4567899999999999998776 889999998 999999999887643

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.08  E-value=1.5e-05  Score=57.13  Aligned_cols=52  Identities=13%  Similarity=0.250  Sum_probs=46.4

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~   52 (84)
                      ++|++  ++.+++.++++.++.+.+.+++.+.+||.+++ ++++|+++.+|++..
T Consensus       195 diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~  249 (408)
T TIGR03520       195 QVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH  249 (408)
T ss_pred             eeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH
Confidence            58987  67899999999999999999999999999864 689999999999753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.05  E-value=2.6e-05  Score=45.04  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++.+++++.++.++.+.|.+.+...+||+|++|+++|+++..++....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~   50 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRAL   50 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHH
Confidence            456788999999999999888888999999889999999987776543

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.03  E-value=2.9e-05  Score=44.63  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             eeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            8 ECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         8 ~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      .+++++.++.++.+.|.+.+...+||+|+ |++.|+++..++...
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence            56789999999999999888999999997 999999999988653

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=4.6e-05  Score=43.97  Aligned_cols=46  Identities=17%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.+++++.++.++.+.|.+.+.+.+||+|+ ++++|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~   47 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKK   47 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            5677899999999999999888999999996 599999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.00  E-value=4e-05  Score=43.82  Aligned_cols=46  Identities=15%  Similarity=0.302  Sum_probs=40.4

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +++.+++.+.++.++.+.|.+.+...+||+|+ ++++|+++..++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~   47 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG   47 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            46778899999999999998888888999996 99999999988764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=5.1e-05  Score=43.53  Aligned_cols=47  Identities=19%  Similarity=0.279  Sum_probs=40.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +..+++++.++.++.+.|.+.+...+||+|++|++.|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~   48 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN   48 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence            45678889999999999988888899999988999999999887643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.99  E-value=2.7e-05  Score=55.90  Aligned_cols=52  Identities=17%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      +++.+++++.++.++++.|.+++.+..+|+|+.|...|+|+..|++.....+
T Consensus       262 ~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge  313 (408)
T TIGR03520       262 REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD  313 (408)
T ss_pred             CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence            4578999999999999999999999999999989999999999998887544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.97  E-value=2.3e-05  Score=45.32  Aligned_cols=42  Identities=14%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             eeCCCCHHHHHHHHHhCC-----CCEeEEEcCCCcEEEEEEHHHHHH
Q 047148           10 ATMETTILDALHIMHDGK-----FLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus        10 v~~~~~l~~a~~~m~~~~-----~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +++++++.++++.|.+++     ...+||+|++|+++|+++..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~   48 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL   48 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence            568899999999998766     468999998899999999888764

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.97  E-value=3e-05  Score=57.08  Aligned_cols=49  Identities=12%  Similarity=0.107  Sum_probs=44.4

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH   51 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~   51 (84)
                      |.+++.+++++.++.++.+.|.++++..+||+|+   +|+++|+|+..++..
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~  157 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF  157 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence            6688899999999999999999999999999996   389999999999854

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.95  E-value=3.4e-05  Score=56.68  Aligned_cols=50  Identities=16%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~   51 (84)
                      .|.+++.++++++++.++.+.|.++++..+||+|++   ++++|+++.+++..
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~  153 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF  153 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence            467788999999999999999999999999999973   79999999999853

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.95  E-value=6.9e-05  Score=43.21  Aligned_cols=47  Identities=19%  Similarity=0.240  Sum_probs=39.0

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ...++++++++.++.+.|.+++...++|.+ +|+++|+++..++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~   48 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAM   48 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHH
Confidence            356788999999999999887777777766 59999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.92  E-value=0.00011  Score=42.54  Aligned_cols=54  Identities=24%  Similarity=0.341  Sum_probs=47.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      +|.+++.++.++.++.++...|.++++..+||++. ++++|+++..++.......
T Consensus         4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~   57 (117)
T COG0517           4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAG   57 (117)
T ss_pred             cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcc
Confidence            45678889999999999999999999999999984 4899999999998877544

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.91  E-value=6.5e-05  Score=43.63  Aligned_cols=48  Identities=15%  Similarity=0.082  Sum_probs=41.5

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHHHHH
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITHAAI   54 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~~~~   54 (84)
                      ...++++.++.++.+.+.+.+...+||+|+   +|+++|+++..++.....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~   54 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK   54 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence            457789999999999998888888999998   689999999999876553

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.87  E-value=9.4e-05  Score=42.93  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=38.7

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCC-CCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGK-FLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~-~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++..++++.++.++.+.|.+++ ...+||.| +|+++|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~   48 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRL   48 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHH
Confidence            4678899999999999998777 66777777 5899999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.83  E-value=5.9e-05  Score=54.65  Aligned_cols=51  Identities=16%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHh-----CCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHD-----GKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~-----~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.+++++.++.++.+.|.+     ++...+||+|++++++|+++.+++..
T Consensus       135 ~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~  190 (449)
T TIGR00400       135 RIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL  190 (449)
T ss_pred             HhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence            4788888999999999999999975     45678899998899999999999864

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.81  E-value=9.9e-05  Score=52.36  Aligned_cols=50  Identities=12%  Similarity=0.173  Sum_probs=44.1

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      |.+...+++++.++.+++..|.+++.. +||+|++|+++|+|+..++....
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            455667899999999999999998888 99999999999999999887665

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.78  E-value=8.5e-05  Score=54.42  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=43.8

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+| +++++|+++..|+.
T Consensus        92 eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~  140 (475)
T TIGR01303        92 DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLL  140 (475)
T ss_pred             hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhh
Confidence            35778899999999999999999999999999988 47999999998874

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.73  E-value=0.00015  Score=51.78  Aligned_cols=53  Identities=13%  Similarity=0.155  Sum_probs=47.2

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY   58 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~   58 (84)
                      ..++++++.++.++++.|..+++++++|+|++|.++|++++.|++........
T Consensus       311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~  363 (381)
T KOG1764|consen  311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS  363 (381)
T ss_pred             ccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence            35789999999999999999999999999999999999999999887765543

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.69  E-value=0.00011  Score=54.13  Aligned_cols=46  Identities=15%  Similarity=0.171  Sum_probs=41.3

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH   51 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~   51 (84)
                      ++.++++++++.++++.|.+++...+||+|+   +|+++|+|+..|+..
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~  154 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI  154 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc
Confidence            4568999999999999999999999999996   589999999999853

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.66  E-value=0.0001  Score=54.91  Aligned_cols=54  Identities=22%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +++.++++++++.++.+|..+|.+++++.+.++++++.+.||++..++...-..
T Consensus       154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~  207 (610)
T COG2905         154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA  207 (610)
T ss_pred             HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHh
Confidence            577889999999999999999999999999999999999999999998776654

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.61  E-value=0.00011  Score=44.88  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG   38 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g   38 (84)
                      |.+++.++++++++.++++.|.+++.+.+||+|+++
T Consensus        84 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          84 QECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            456788999999999999999999999999998654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK11573 hypothetical protein; Provisional

Probab=97.58  E-value=0.0003  Score=50.65  Aligned_cols=53  Identities=15%  Similarity=0.068  Sum_probs=47.9

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +++..++++.++.++++.|++++.+...|+|+-|...|+|+..|++.....+.
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei  314 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  314 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence            46778999999999999999999999999999999999999999988876554

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.56  E-value=9e-05  Score=53.55  Aligned_cols=53  Identities=28%  Similarity=0.343  Sum_probs=48.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.+.+...++.++.+++.+++...+||+|++|+++.++...|+.++.
T Consensus       175 ~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  175 DVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             hhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            57888888889999999999999999999999999999999999999887665

>PRK11573 hypothetical protein; Provisional

Probab=97.48  E-value=0.0006  Score=49.14  Aligned_cols=52  Identities=8%  Similarity=0.029  Sum_probs=45.3

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~   52 (84)
                      ++|++  +..+++.+.++.++.+.+.+++...+||.+++ ++++|+++.+|++..
T Consensus       191 eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~  245 (413)
T PRK11573        191 DIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRL  245 (413)
T ss_pred             hcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHH
Confidence            57886  55689999999999999999999999998754 789999999998754

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.48  E-value=0.00033  Score=50.40  Aligned_cols=48  Identities=8%  Similarity=0.129  Sum_probs=39.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +|.+++.++++++++.++++.|.+++   .|+++++|+++|+|+..+++..
T Consensus       405 im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       405 VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence            57778889999999999999998754   3555557999999999998765

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.45  E-value=0.00054  Score=49.45  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY   58 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~   58 (84)
                      ++..++++.++.++++.|++.+.+...|+|+-|...|+|+..|++.....++.
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~  332 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP  332 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence            67899999999999999999999999999999999999999999888765544

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.44  E-value=0.00067  Score=48.75  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=43.3

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +.+...++++++++.+++..+.+.... +||+|++|+++|+|+..+++....
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        343 LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            344567899999999999999887655 999999999999999999877654

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.43  E-value=0.00028  Score=50.31  Aligned_cols=52  Identities=15%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             CCCC--CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMT--SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~--~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      |+|+  ..+.++.+++++++..++-.+.+...+||+|+..+++|+++.+|+...
T Consensus       192 di~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~  245 (432)
T COG4109         192 DIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK  245 (432)
T ss_pred             HhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC
Confidence            4676  467789999999999999999999999999999999999988887554

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.39  E-value=0.00073  Score=48.77  Aligned_cols=56  Identities=14%  Similarity=0.249  Sum_probs=48.4

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEc-CCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVID-KDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd-~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|++  +..+++.+.+.+++.+.+.+.+...+||.+ +.+.++|+++.+|++......
T Consensus       210 eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         210 EIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             eEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            47886  455788889999999999999999999999 557899999999998887655

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.00083  Score=50.84  Aligned_cols=52  Identities=19%  Similarity=0.235  Sum_probs=48.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      .|++.|.++++++++..+...+++-+.+|+.|++..++.+|+++++|++...
T Consensus       695 ~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  695 FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             ccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            5788999999999999999999999999999999999999999999997554

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0011  Score=48.43  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=45.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHh-----CCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHD-----GKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~-----~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|++.+++++++.|+.+++..+++     .....+.|+|+++++.|+++.++++.+.
T Consensus       137 ~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~  193 (451)
T COG2239         137 IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE  193 (451)
T ss_pred             cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC
Confidence            688999999999999999999883     3478899999999999999999987443

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.07  E-value=0.0017  Score=41.75  Aligned_cols=50  Identities=12%  Similarity=0.157  Sum_probs=41.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|..++.+++++.++.-+..++..+  ..+.|+ ++|+++|||+..|++...
T Consensus       134 ~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         134 EVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLL  183 (187)
T ss_pred             HHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHH
Confidence            47888889999999999998887665  457777 589999999999987654

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.78  E-value=0.0033  Score=45.05  Aligned_cols=48  Identities=25%  Similarity=0.477  Sum_probs=42.4

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +...+..+.++.+|+++|.++++..+||+|++|+.+|.++..|+....
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~  285 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA  285 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence            466788899999999999999999999999999999999888865543

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.0086  Score=43.09  Aligned_cols=54  Identities=17%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY   58 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~   58 (84)
                      .+|..+++++++.+-+..|.+++-+.-.|+|+=|.+.|+++++|++......+.
T Consensus       275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft  328 (423)
T COG4536         275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT  328 (423)
T ss_pred             cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence            467789999999999999999988888999999999999999999888754443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.66  E-value=0.043  Score=39.36  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=38.1

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ...++++++++.+++..+.+.... +||+|+ |+++|+|+..+++...
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence            456789999999999988776544 888885 9999999999887654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.72  E-value=0.11  Score=37.15  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      .+.+.++.+++++.+.+..+.+.. -.+||+|++|+++|+++...++...
T Consensus       334 ~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         334 IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHH
Confidence            345567888889998888876654 4588999999999999888876654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=94.49  E-value=0.16  Score=34.85  Aligned_cols=51  Identities=16%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      .++.+.++++-.+...++-++.++-+...|+|+=|.+.|+|+++|++....
T Consensus       139 LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIV  189 (293)
T COG4535         139 LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIV  189 (293)
T ss_pred             cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHh
Confidence            356678888888999999999988999999999999999999999876654

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.36  E-value=0.04  Score=42.10  Aligned_cols=49  Identities=14%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-----CcEEEEEEHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD-----GGVAACLDVLQI   49 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-----g~l~Giv~~~~i   49 (84)
                      |+|+++.++++....+..+.+.+.....+.+||+|+.     +++.|+|=+.++
T Consensus       586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl  639 (762)
T KOG0474|consen  586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHL  639 (762)
T ss_pred             hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHH
Confidence            5788888899999999999999999999999999854     467888844443

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=94.31  E-value=0.028  Score=38.47  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      |+|.+  ...+++.+.++.+.+..+.+...+.+||+.++ .++.||+-.+|+++...
T Consensus        71 DiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~  127 (293)
T COG4535          71 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR  127 (293)
T ss_pred             hhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc
Confidence            46765  34578889999999999999999999999644 67999998888877543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.10  E-value=0.17  Score=35.25  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148           14 TTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus        14 ~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ....+++..+...+...+||+|++|+++|.++..++..
T Consensus       270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            34455666667778999999999999999999988754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=94.03  E-value=0.22  Score=35.92  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148           12 METTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus        12 ~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++.+..++++.|...+.+.++|+|+++++.|+++..++...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  332 (400)
T PRK10070        292 PGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTA  332 (400)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhh
Confidence            56688899999999999999999999999999999988643

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.87  E-value=0.19  Score=38.48  Aligned_cols=50  Identities=12%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +|...|.++....+.+-+++++++-+.+++.|. ++|++.|+|+.+|.+..
T Consensus       644 il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  644 ILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH  693 (696)
T ss_pred             eccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence            566778899999999999999999999999765 58999999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=92.80  E-value=0.71  Score=32.94  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=37.2

Q ss_pred             eeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            9 CATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         9 ~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ...++.+..++.+.|...+.+...|+|+++++.|+++..++...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  297 (363)
T TIGR01186       254 TKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQA  297 (363)
T ss_pred             eecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHH
Confidence            44566788999999998889999999999999999998887543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=90.92  E-value=0.25  Score=36.30  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=40.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITHA   52 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~~   52 (84)
                      .+|.+++|+.++.++++....+++..+|+.+..   .+|+|+|+-+|+...
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence            467889999999999999889999999998632   589999988887443

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=90.81  E-value=0.53  Score=35.72  Aligned_cols=56  Identities=13%  Similarity=0.064  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-hhhhhhccccchhhhH
Q 047148           16 ILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-CYEWHYCNERDLTCCF   72 (84)
Q Consensus        16 l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-~~~~~~~~~~~~~~~~   72 (84)
                      +.++.+...+.+-.-++|+. +|++.|+|.+.|+.+....+ +.++++...+-+||+-
T Consensus       415 l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TG  471 (681)
T COG2216         415 LDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITG  471 (681)
T ss_pred             HHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeC
Confidence            55666666677777788886 78999999999998877655 8889999999999974

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.28  E-value=0.86  Score=35.91  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC--cEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG--GVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g--~l~Giv~~~~i~~~~   53 (84)
                      ++|.++..++..+.+..|..+.+....++.+|+||+.+  -++|.|.+..+....
T Consensus       592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            47899999999999999999988876699999998553  589999777765544

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=88.26  E-value=0.7  Score=33.60  Aligned_cols=54  Identities=9%  Similarity=0.147  Sum_probs=43.7

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      |+|.+  +...+..+++.+++++.+...-...+|+..++ +.++|++..+++.+...
T Consensus       204 DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~  260 (423)
T COG4536         204 DIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN  260 (423)
T ss_pred             eeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh
Confidence            57875  45588999999999999988888899998543 57999999998866653

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=84.04  E-value=2.7  Score=33.25  Aligned_cols=50  Identities=12%  Similarity=0.092  Sum_probs=42.5

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +.|..+.+.+|+.++=.++.--++++..|.+ -|+++|+|.+.++..+..+
T Consensus       810 paPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~  859 (931)
T KOG0476|consen  810 PAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN  859 (931)
T ss_pred             CCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence            4567788899999999988888899999987 6999999999988776644

>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria

Probab=80.06  E-value=7  Score=21.83  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=20.9

Q ss_pred             CCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148           28 FLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus        28 ~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      .+.+-++|++|+..|+++..+++......
T Consensus        12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~   40 (76)
T PF05198_consen   12 APEVRLIDEDGEQLGVMSLREALRLAKEK   40 (76)
T ss_dssp             -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred             CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence            45677899999999999999987665433

IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	5e-09
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-04
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	6e-09
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	7e-09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-05
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	5e-08
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-08
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-04
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-06
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-04
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-07
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	5e-07
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	6e-07
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-06
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-07
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-06
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-06
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-06
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-06
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	5e-04
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-06
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	5e-06
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-05
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-05
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-05
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-05
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-05
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	9e-05
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-04

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 48.4 bits (116), Expect = 5e-09
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
            MT+S      ++ I  AL +M      HLPV+D  G
Sbjct: 72  FMTASLITIREDSPITGALALMRQFNIRHLPVVDDKG 108

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           M +     T +  + D   +M +     + V+D +
Sbjct: 9  YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN 44

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 48.5 bits (116), Expect = 6e-09
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
            MT +       +T    + IM  G+F H+PV +  
Sbjct: 98  AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG 133

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVA 41
                     + +I +A   +H  K   + V D DG V 
Sbjct: 32 RKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVL 71

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 49.0 bits (117), Expect = 7e-09
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +MT SP      T + DA  ++ + KF  LPV+D DG
Sbjct: 103 LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADG 139

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 2  VMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           MT           T++ DAL ++ + K   LPVID + 
Sbjct: 9  FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW 47

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 47.2 bits (113), Expect = 1e-08
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           +MT       +  T  D + ++ + +  HLPV+D  
Sbjct: 79  IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG 114

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 46.1 bits (110), Expect = 5e-08
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           +MT+         +  + + +M + +  HLPV+D  
Sbjct: 83  IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGG 118

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 45.7 bits (109), Expect = 5e-08
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           +MT +   A + T + + L  M + +  H+ + ++ 
Sbjct: 77  IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG 112

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           MT         T++ +A  +M +     L VI+ DG
Sbjct: 12 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDG 48

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VM         +  + D    + +       V+D  G
Sbjct: 80  VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG 116

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          +M S+ +     TT+ DA+ IM++     L V D +G
Sbjct: 14 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG 50

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
            M++  +    E  +  A+ +M    F  LPVID D 
Sbjct: 161 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN 197

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
            MT +P      +    A++IM    F  LPV+D +   
Sbjct: 98  YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKP 136

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VM ++        ++  A   M   +   L +++KD 
Sbjct: 232 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDN 268

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDK 36
          +M  +P   + E  +  A   +++G    + V ++
Sbjct: 25 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE 59

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          +MT  P       T+ DA H+M      H+P++D + 
Sbjct: 10 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK 46

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           VM +       +  + ++   M   K   LPV+ KD
Sbjct: 83  VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD 118

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 43.8 bits (104), Expect = 4e-07
 Identities = 4/37 (10%), Positives = 14/37 (37%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          +++  P     +T I + +  + +        + +D 
Sbjct: 21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN 57

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +M   P    M+T + +AL +M D     +PV+D+ G
Sbjct: 101 IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG 136

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 43.3 bits (103), Expect = 4e-07
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          +++  P  A    +I++A  I+      HLP++D+ G
Sbjct: 6  ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHG 42

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 40.6 bits (96), Expect = 4e-06
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +MT +   A  +  +      M       +PV+D   
Sbjct: 67  IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYR 103

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 44.5 bits (104), Expect = 5e-07
 Identities = 12/77 (15%), Positives = 21/77 (27%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWH 61
          +          E ++  A +IM D     +PV D +  +   L    IT   + +     
Sbjct: 12 LEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNI 71

Query: 62 YCNERDLTCCFYHLAKA 78
                          A
Sbjct: 72 LAKSATSLDNILDTLSA 88

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 42.9 bits (102), Expect = 6e-07
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           +   S        +I + L++M + +   +PVI + 
Sbjct: 79  LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH 114

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 40.2 bits (95), Expect = 7e-06
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
          +M +   C     T+  A   M +     LP+   D  +
Sbjct: 13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRL 51

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 43.0 bits (102), Expect = 7e-07
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 3   MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           + +SP        +  A   M      H+ V++K+G
Sbjct: 76  IANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG 111

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 4/38 (10%), Positives = 11/38 (28%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39
          ++   P       TI +    +   +     +  +D  
Sbjct: 10 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNP 47

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 42.2 bits (100), Expect = 1e-06
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          VMT +   A     +++A   M   K   LPVID + 
Sbjct: 13 VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDEN 49

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 2   VMTSSPECATMETTILDALHIM-----HDGKFLHLPVIDKDG 38
           VMT        + +IL+A+  M      +     LPV+DK+ 
Sbjct: 78  VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN 119

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
            ++        E  I  AL +  + +  +LPV+D++ 
Sbjct: 77  KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM 113

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +T          T+ + LH M   +     V D++G
Sbjct: 18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREG 54

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 1   MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           M++           T+  A  +M +  +  + V+D  G
Sbjct: 64  MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG 101

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          +MT +P   T+  T   AL +    K    PV++K+G
Sbjct: 6  IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEG 42

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
           +MT     AT   T+ +    M       LPVI  +G +
Sbjct: 226 IMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDL 264

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 4/39 (10%), Positives = 13/39 (33%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
           +M  +         I +A+           P+++ +  +
Sbjct: 89  IMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQL 127

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
            +T     AT    + D    M    F  LPV+ + 
Sbjct: 153 YITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG 188

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           +M      A     +     IM       LPV+D++ 
Sbjct: 228 IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENL 264

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39
                      TTI  AL  M++ K+  LPV++    
Sbjct: 9  AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNN 46

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.4 bits (98), Expect = 2e-06
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query: 1  MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
          ++   + +   M T ++D + ++  G+   +P+ID++G
Sbjct: 15 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG 52

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 36.4 bits (85), Expect = 2e-04
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 3   MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG---GVAACLDVLQ 48
                   T    +   +  +   +     V+D  G   GV    D+L+
Sbjct: 89  DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 137

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VM  +     ++ +++ A+ ++ +  F  + V + DG
Sbjct: 88  VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDG 122

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 2  VMTSSPECATM--ETTILDALHIMHDGKFLHLPVIDKDG 38
           +  + + A +     +  AL ++    +  +PV+D   
Sbjct: 16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY 54

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 1   MVMTSSPE--CATMETTILDALHIMHDGKFLHLPVIDKDG 38
           ++MT  P       E  ++D    + + +   LPVI    
Sbjct: 85  IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTD 124

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 1  MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
             +  P       ++ DA+  M       L V+D+D 
Sbjct: 21 DFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA 57

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 40.6 bits (96), Expect = 5e-06
 Identities = 9/36 (25%), Positives = 12/36 (33%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
           VM       +   TI +A   M       L V + D
Sbjct: 70  VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD 105

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 5/36 (13%), Positives = 13/36 (36%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD 37
          VM +  +   +  ++ D L    +       V+ + 
Sbjct: 6  VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG 41

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 12/58 (20%), Positives = 20/58 (34%)

Query: 3   MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEW 60
             ++       T +  AL I    +   LPV+D+ G V        + + A    Y  
Sbjct: 199 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 256

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG---GVAACLDVLQ 48
                     +  T+   ++ + + +   L V+D+     G+ +  D+LQ
Sbjct: 270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQ 319

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VM        +E +   AL +  D  F  +  +++DG
Sbjct: 92  VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDG 126

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 2  VMTSSPECATM--ETTILDALHIMHDGKFLHLPVIDKDG 38
          +M SS + A +     +  AL ++    +  +PV+D   
Sbjct: 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY 58

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           VM +      +   I+    ++ +  F  + V + + 
Sbjct: 91  VMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQ 125

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 11/68 (16%), Positives = 21/68 (30%)

Query: 1   MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEW 60
            V             + +A   M + +   +P+ID+D      + V  +T   I      
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVAL 177

Query: 61  HYCNERDL 68
           +      L
Sbjct: 178 NCRETHFL 185

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query: 1   MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
           ++   + +   M T ++D + ++  G+   +P+ID++G
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG 231

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 2   VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
            +  +         + D L  +   K   +P+ D+DG
Sbjct: 73  ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDG 109

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG-----GVAACLDVLQITHAAISM 56
           M  S      +T + + + ++        P+++        G+     ++Q   A    
Sbjct: 18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS 77

Query: 57 CYEWHYCNERDLTCCFYHLAKA 78
              H    +D+          
Sbjct: 78 RAPGHQQCLQDILARGCPTEPV 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.26
4esy_A	170	CBS domain containing membrane protein; structural	99.2
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.14
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.08
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.08
4esy_A	170	CBS domain containing membrane protein; structural	99.07
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.06
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.06
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.05
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.05
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.05
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.03
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.03
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.03
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.02
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.02
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.01
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.01
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.01
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.0
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.98
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.98
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.98
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.97
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.97
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.97
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.97
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.96
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.96
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.95
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.95
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.94
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.94
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.93
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.92
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.92
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.92
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.92
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.92
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.91
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.91
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.91
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.9
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.9
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.9
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.9
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.9
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.9
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.89
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.89
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.89
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.88
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.88
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.88
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.88
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.88
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.88
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.87
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.87
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.87
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.87
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.87
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.87
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.87
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.87
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.86
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.86
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.86
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.86
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.85
3ddj_A	296	CBS domain-containing protein; structural genomics	98.85
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.84
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.84
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.84
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.83
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.82
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.81
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.81
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.8
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.8
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.8
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.79
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.78
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.78
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.77
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.77
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.77
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.75
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.74
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.74
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.72
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.72
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.72
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.69
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.67
3ddj_A	296	CBS domain-containing protein; structural genomics	98.67
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.65
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.64
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.63
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.61
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.58
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.57
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.57
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.51
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.49
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.44
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.35
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.33
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.29
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.28
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.27
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.24
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.23
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.22
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.18
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.15
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.15
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.11
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.1
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.99
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.96
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.88
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.59
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.49

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.26  E-value=2.7e-11  Score=66.46  Aligned_cols=62  Identities=8%  Similarity=0.034  Sum_probs=50.1

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhhhhhccccchh
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLT   69 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~~~~~~~~~~   69 (84)
                      ++++++++++.+|++.|.+++++++||+| +|+++||++.+|+..............+.+++|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iM   63 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIM   63 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhc
Confidence            57899999999999999999999999998 689999999999987654443333444555555

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.20  E-value=2.5e-11  Score=75.29  Aligned_cols=52  Identities=15%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      |+|++++.++++++++.+|++.|.+++++.+||+|++|+++|+++..|++..
T Consensus        22 diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~   73 (170)
T 4esy_A           22 DILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRG   73 (170)
T ss_dssp             GGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGG
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHH
Confidence            5899999999999999999999999999999999999999999999988643

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.08  E-value=4.5e-10  Score=72.21  Aligned_cols=57  Identities=23%  Similarity=0.336  Sum_probs=51.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++.......
T Consensus       120 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          120 SLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             GGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence            478888999999999999999999999999999999999999999999877765443

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.08  E-value=2.9e-10  Score=67.28  Aligned_cols=59  Identities=29%  Similarity=0.364  Sum_probs=51.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYE   59 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~   59 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..........
T Consensus        71 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~  129 (133)
T 2ef7_A           71 EFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFET  129 (133)
T ss_dssp             GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC--
T ss_pred             HHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHH
Confidence            36777888999999999999999999999999999889999999999998877655443

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.07  E-value=1.5e-10  Score=71.74  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|++++.++++++++.++++.|.+++++++||+| +|+++|+|+..|++...
T Consensus       110 im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A          110 VMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             hcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            6889999999999999999999999999999998 69999999999997654

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.06  E-value=2.8e-10  Score=70.26  Aligned_cols=57  Identities=32%  Similarity=0.452  Sum_probs=51.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY   58 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~   58 (84)
                      +|++++.++++++++.++++.|.+++.+++||+|++|+++|+|+..+++........
T Consensus       103 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~  159 (180)
T 3sl7_A          103 LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR  159 (180)
T ss_dssp             HSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             HhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhh
Confidence            577788899999999999999999999999999989999999999999887765443

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.06  E-value=5.6e-10  Score=67.44  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.....
T Consensus        92 ~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           92 EIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             GTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             Hhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            467 778999999999999999999999999999988999999999999877643

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.06  E-value=5e-10  Score=72.87  Aligned_cols=55  Identities=20%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++++.+|++.|.+++++++||+|++|+++|+++..++......
T Consensus        11 ~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A           11 DLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             GSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            5899999999999999999999999999999999988999999999999877643

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.05  E-value=8.2e-10  Score=66.68  Aligned_cols=54  Identities=15%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++  ++.++++++++.++++.|.+++.+.+||+|++ |+++|+++..++.....
T Consensus        27 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~   83 (148)
T 3lv9_A           27 EIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI   83 (148)
T ss_dssp             GTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             HccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            47887  88999999999999999999999999999987 89999999999977643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.05  E-value=5.2e-10  Score=65.20  Aligned_cols=53  Identities=17%  Similarity=0.129  Sum_probs=48.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++...
T Consensus        66 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           66 EIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             GTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence            46888889999999999999999999999999999889999999999997764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.05  E-value=8.3e-10  Score=65.46  Aligned_cols=53  Identities=11%  Similarity=0.157  Sum_probs=46.6

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +|.+ +.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.....
T Consensus        74 ~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 LVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             GCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             HhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            5644 7899999999999999999999999999988999999999999877653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.04  E-value=6.1e-10  Score=67.78  Aligned_cols=56  Identities=14%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++.......
T Consensus        90 ~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~  145 (153)
T 3oco_A           90 TIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL  145 (153)
T ss_dssp             GTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred             HHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence            467 78899999999999999999999999999998899999999999988776543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.03  E-value=9.1e-10  Score=66.43  Aligned_cols=58  Identities=19%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEW   60 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~   60 (84)
                      ++|.+++.++++++++.++++.|.+++.  +||+|++|+++|+|+..+++.........+
T Consensus        91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~~  148 (150)
T 3lqn_A           91 QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQH  148 (150)
T ss_dssp             GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC---
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHhh
Confidence            4688888999999999999999998876  999998999999999999988876655443

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.03  E-value=7.3e-10  Score=68.85  Aligned_cols=55  Identities=9%  Similarity=0.075  Sum_probs=49.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++......
T Consensus       111 ~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          111 DLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE  165 (172)
T ss_dssp             GGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred             HHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence            467 7889999999999999999999999999999889999999999998876544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=4.7e-10  Score=66.81  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +| +++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|++.....
T Consensus        75 ~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           75 AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence            45 567899999999999999999999999999989999999999999877543

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.02  E-value=4.6e-10  Score=67.35  Aligned_cols=55  Identities=29%  Similarity=0.500  Sum_probs=49.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++......
T Consensus        90 ~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           90 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            5777788999999999999999999999999999889999999999998876543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.02  E-value=8e-10  Score=65.27  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=46.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|.+ +.++++++++.++++.|.+++.+++||+|++|+++|+++..+++...
T Consensus        74 ~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           74 VLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             HCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             HcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            4644 67899999999999999999999999999999999999999998654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.01  E-value=4.9e-10  Score=67.11  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=47.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++ +.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.....
T Consensus        74 ~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           74 KLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             GTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred             HHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            36755 7899999999999999999999999999989999999999999876544

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.01  E-value=6.6e-10  Score=68.54  Aligned_cols=55  Identities=22%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++|++++.++++++++.++++.|.+++  .+||+|++|+++|+|+..|++.......
T Consensus        90 ~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A           90 HMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             GTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred             HhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence            478899999999999999999998765  4999999999999999999988775443

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.01  E-value=4.1e-10  Score=66.52  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+++..+++....
T Consensus        72 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           72 EELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             GGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            367788889999999999999999999999999998999999999999987653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.00  E-value=1.5e-09  Score=67.97  Aligned_cols=54  Identities=28%  Similarity=0.373  Sum_probs=49.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..++.....
T Consensus        13 ~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A           13 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            478888999999999999999999999999999998899999999999987643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.98  E-value=2.5e-09  Score=71.04  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC--CcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD--GGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~--g~l~Giv~~~~i~~~~~~~   56 (84)
                      |+|+++++++.+++++.++.++|.+++++.+||+|++  |+++|+|+..+++......
T Consensus        17 diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           17 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            6899999999999999999999999999999999964  6899999999998765444

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.98  E-value=8e-10  Score=64.38  Aligned_cols=54  Identities=22%  Similarity=0.434  Sum_probs=49.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++.....
T Consensus         5 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~   58 (122)
T 3kpb_A            5 DILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA   58 (122)
T ss_dssp             HHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH
T ss_pred             HhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH
Confidence            468888999999999999999999999999999998999999999999977643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.98  E-value=1.6e-09  Score=65.57  Aligned_cols=53  Identities=13%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus        32 dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   86 (149)
T 3k2v_A           32 DIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVF   86 (149)
T ss_dssp             GTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHH
Confidence            47888  889999999999999999999999999999889999999999998654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.97  E-value=8e-10  Score=65.51  Aligned_cols=52  Identities=17%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +| +++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++....
T Consensus        77 ~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           77 VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            46 35779999999999999999999999999998899999999999987643

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.97  E-value=7.9e-10  Score=67.43  Aligned_cols=53  Identities=30%  Similarity=0.518  Sum_probs=48.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +|++ +.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++.....
T Consensus       101 im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A          101 IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            5778 8899999999999999999999999999988999999999999876643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=1.1e-09  Score=67.43  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             CCCC---CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTS---SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~---~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +|++   ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++......
T Consensus        29 im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   85 (165)
T 3fhm_A           29 LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG   85 (165)
T ss_dssp             HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            4653   68899999999999999999999999999988999999999999776544

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.97  E-value=2.5e-09  Score=68.75  Aligned_cols=55  Identities=18%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++++.++++.|.+++++.+||+|++|+++|+++..|++.....
T Consensus        76 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           76 NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            4788889999999999999999999999999999988999999999999876643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.96  E-value=1.4e-09  Score=64.62  Aligned_cols=53  Identities=25%  Similarity=0.310  Sum_probs=47.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCC-----CCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGK-----FLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~-----~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|.+++.++++++++.++++.|.+++     .+.+||+|++|+++|+++..+++....
T Consensus        78 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           78 VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            57788889999999999999999999     999999998899999999999977653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.96  E-value=1.7e-09  Score=64.15  Aligned_cols=53  Identities=28%  Similarity=0.458  Sum_probs=48.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+| +|+++|+++..+++....
T Consensus        78 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           78 EIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             HhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            46888889999999999999999999999999999 799999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.95  E-value=2e-09  Score=63.99  Aligned_cols=51  Identities=24%  Similarity=0.244  Sum_probs=47.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        11 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~   61 (138)
T 2yzi_A           11 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR   61 (138)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Confidence            478888999999999999999999999999999998899999999999964

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.95  E-value=4.8e-10  Score=72.98  Aligned_cols=53  Identities=19%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             CCCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|+ +++.++++++++.++++.|.+++++.+||+|++|+++|+++..+++...
T Consensus       189 ~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             HHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             eEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            3688 8899999999999999999999999999999899999999999987654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.94  E-value=1.9e-09  Score=64.52  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=47.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|.+++.+++++ ++.++++.|.+++.+.+||+|++|+++|+++..+++...
T Consensus        75 ~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           75 PIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             GGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             HHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence            4688888999999 999999999999999999999889999999999986654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.94  E-value=1.4e-09  Score=66.67  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=49.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.+++++.++.+|++.|.+++.+.+||+|++|+++|+++..++.....
T Consensus         9 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   62 (160)
T 2o16_A            9 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE   62 (160)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence            478888899999999999999999999999999998899999999999977654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.93  E-value=2.2e-09  Score=63.32  Aligned_cols=52  Identities=12%  Similarity=0.122  Sum_probs=47.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..++....
T Consensus         9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~   60 (128)
T 3gby_A            9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGR   60 (128)
T ss_dssp             GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTC
T ss_pred             HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            478999999999999999999999999999999998 9999999999997643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.92  E-value=3.3e-09  Score=62.91  Aligned_cols=52  Identities=27%  Similarity=0.296  Sum_probs=47.6

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHH-HHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQI-THA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i-~~~   52 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++ ...
T Consensus        12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   64 (138)
T 2p9m_A           12 DVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNL   64 (138)
T ss_dssp             GTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHH
Confidence            4788888999999999999999999999999999988999999999998 654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.92  E-value=3e-09  Score=63.62  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=49.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC--cEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG--GVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g--~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|  +++|+++..++.....
T Consensus         9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~   64 (141)
T 2rih_A            9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA   64 (141)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHh
Confidence            47888899999999999999999999999999999888  9999999999977643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.92  E-value=6.2e-10  Score=65.86  Aligned_cols=51  Identities=20%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~   62 (133)
T 1y5h_A           12 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI   62 (133)
T ss_dssp             HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHH
T ss_pred             HHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHH
Confidence            357788889999999999999999999999999988899999999999874

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.92  E-value=4.7e-09  Score=64.66  Aligned_cols=53  Identities=9%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             CCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|++  +..++.++.++.+|++.|.+++++++||+|++|+++|+++..|+.....
T Consensus        20 iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~   74 (156)
T 3k6e_A           20 FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM   74 (156)
T ss_dssp             GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred             hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhh
Confidence            5664  6779999999999999999999999999998899999999999876654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.92  E-value=2.7e-09  Score=63.52  Aligned_cols=53  Identities=15%  Similarity=0.414  Sum_probs=48.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++.....
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~   68 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK   68 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhc
Confidence            57788889999999999999999999999999998899999999999976543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.91  E-value=3.2e-09  Score=62.85  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=47.6

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++  .+.++++++++.++++.|.+++.+.+||+|++ |+++|+++..++.....
T Consensus        10 ~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~   66 (130)
T 3i8n_A           10 QVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ   66 (130)
T ss_dssp             TTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH
T ss_pred             hCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh
Confidence            57885  44589999999999999999999999999987 89999999999987653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.91  E-value=2.1e-09  Score=65.74  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC---cEEEEEEHHHHHHHHHhhhhh
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDG---GVAACLDVLQITHAAISMCYE   59 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g---~l~Giv~~~~i~~~~~~~~~~   59 (84)
                      ++|++  ++.++++++++.++++.|.+++.+.+||+|++|   +++|+|+..+++.........
T Consensus        85 ~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~  148 (159)
T 3fv6_A           85 IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSEN  148 (159)
T ss_dssp             GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhc
Confidence            46776  788999999999999999999999999999888   999999999998877654443

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.91  E-value=1.7e-09  Score=70.81  Aligned_cols=53  Identities=21%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++++++||+|++|+++|+|+..|++...
T Consensus       225 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          225 EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  277 (282)
T ss_dssp             GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             HhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHH
Confidence            47888999999999999999999999999999999878999999999987543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.90  E-value=3e-09  Score=65.19  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+|+..+++......
T Consensus        83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~  136 (160)
T 2o16_A           83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINL  136 (160)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHH
T ss_pred             HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence            57788889999999999999999999999999997 9999999999998765543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.90  E-value=3.4e-09  Score=64.20  Aligned_cols=53  Identities=11%  Similarity=0.165  Sum_probs=48.0

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++  ++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus        15 ~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   69 (157)
T 2emq_A           15 PFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAI   69 (157)
T ss_dssp             TTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHS
T ss_pred             hhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHH
Confidence            46776  788999999999999999999999999999889999999999997654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.90  E-value=2.5e-09  Score=65.41  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=43.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|.+ +.++++++++.++++.|.+++.+.+||+|++|+++|+++..|++
T Consensus       108 im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 ILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             HCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             HcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            4655 78999999999999999999999999999999999999999874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.90  E-value=3.9e-09  Score=61.55  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=47.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+| +|+++|+++..++....
T Consensus         5 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~   56 (125)
T 1pbj_A            5 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAI   56 (125)
T ss_dssp             HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             HhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHH
Confidence            36888889999999999999999999999999999 89999999999987654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.90  E-value=5.2e-09  Score=64.93  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             CCCC--CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            1 MVMT--SSPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~--~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      ++|+  +++.++++++++.++++.|.+++++.+||+|++ |+++|+++..++.....
T Consensus        46 diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~  102 (172)
T 3lhh_A           46 SLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI  102 (172)
T ss_dssp             TTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             HhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh
Confidence            5788  567899999999999999999999999999987 89999999999987654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.89  E-value=4.7e-09  Score=63.79  Aligned_cols=53  Identities=11%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC--CCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDK--DGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~--~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|+  +|+++|+++..++....
T Consensus        17 dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~   71 (164)
T 2pfi_A           17 HFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL   71 (164)
T ss_dssp             HHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHH
T ss_pred             HHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHH
Confidence            368888899999999999999999999999999996  79999999999987655

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.89  E-value=3.7e-09  Score=64.97  Aligned_cols=55  Identities=25%  Similarity=0.412  Sum_probs=49.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+|+..+++......
T Consensus        97 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A           97 VAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             GTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence            468888899999999999999999999999999998 9999999999998876543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.89  E-value=2.5e-09  Score=62.37  Aligned_cols=51  Identities=20%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..++....
T Consensus        70 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           70 VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK  120 (125)
T ss_dssp             HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred             HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            57788889999999999999999999999999997 9999999999987654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.88  E-value=6e-09  Score=63.09  Aligned_cols=56  Identities=14%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY   58 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~   58 (84)
                      ++|.+++.++++++++.++++.|.+++.  +||+|++|+++|+|+..+++........
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence            4688888999999999999999999876  9999988999999999999877655433

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.88  E-value=4.1e-09  Score=70.13  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++.....
T Consensus       203 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          203 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             TTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             HHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence            4788889999999999999999999999999999989999999999999876543

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.88  E-value=3.7e-09  Score=63.35  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=46.8

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus         9 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~   61 (152)
T 4gqw_A            9 EFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA   61 (152)
T ss_dssp             GTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTT
T ss_pred             hccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHH
Confidence            47877  7889999999999999999999999999998899999999999864

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.88  E-value=6.6e-09  Score=61.34  Aligned_cols=53  Identities=15%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+| +|+++|+++..++.....
T Consensus         8 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~   60 (133)
T 2ef7_A            8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIG   60 (133)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHh
Confidence            47888889999999999999999999999999999 899999999999976543

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.88  E-value=3e-09  Score=64.65  Aligned_cols=55  Identities=18%  Similarity=0.369  Sum_probs=49.7

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +|++++.++++++++.++++.|.+++.+++||+| +|+++|+++..+++.......
T Consensus        83 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           83 IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred             HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            5778888999999999999999999999999999 799999999999988775443

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.87  E-value=4.2e-09  Score=62.57  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=49.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|.+++.++++++++.++++.|.+++.+++ |+|++|+++|+++..+++......
T Consensus        76 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           76 RIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             GTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             HHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence            4688888999999999999999999999999 999889999999999998776543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.87  E-value=1.5e-09  Score=64.11  Aligned_cols=52  Identities=15%  Similarity=0.210  Sum_probs=46.5

Q ss_pred             CCCCCC--CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148            1 MVMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~--~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~   52 (84)
                      ++|+++  +.++++++++.++++.|.+++.+.+||+|++ |+++|+++..++...
T Consensus         7 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~   61 (127)
T 3nqr_A            7 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF   61 (127)
T ss_dssp             HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGG
T ss_pred             HhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            368754  8899999999999999999999999999987 899999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.87  E-value=6.2e-09  Score=63.60  Aligned_cols=52  Identities=19%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++ +.++++++++.+|++.|.+++.+.+||+|++|+++|+++..++....
T Consensus        21 ~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   72 (159)
T 3fv6_A           21 DFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRAS   72 (159)
T ss_dssp             GSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHh
Confidence            47876 56999999999999999999999999999889999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.87  E-value=2e-09  Score=63.82  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=46.7

Q ss_pred             CCCC--CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHH
Q 047148            1 MVMT--SSPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~--~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~   53 (84)
                      ++|+  +++.+++++.++.++++.|.+++.+++||+|++ |+++|+++..+++...
T Consensus         9 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~   64 (129)
T 3jtf_A            9 DIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYM   64 (129)
T ss_dssp             HHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGG
T ss_pred             HhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHh
Confidence            3677  566899999999999999999999999999985 8999999999987653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.87  E-value=3.3e-09  Score=62.92  Aligned_cols=50  Identities=12%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             CCC---CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            2 VMT---SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         2 vm~---~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +|+   +++.+++++.++.++++.|.+++.+.+||+| +|+++|+++..++...
T Consensus        11 im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~   63 (135)
T 2rc3_A           11 LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRK   63 (135)
T ss_dssp             HHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             HHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHH
Confidence            566   7888999999999999999999999999999 8999999999999753

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.87  E-value=4.8e-09  Score=65.58  Aligned_cols=53  Identities=13%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++...
T Consensus        79 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           79 LVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             GTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             HHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            46888889999999999999999999999999999889999999999986544

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.87  E-value=3.2e-09  Score=62.74  Aligned_cols=51  Identities=16%  Similarity=0.257  Sum_probs=46.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..+++...
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           79 LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            57788889999999999999999999999999997 9999999999987643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.86  E-value=2.5e-09  Score=64.50  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             CCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus        20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   73 (150)
T 3lqn_A           20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGI   73 (150)
T ss_dssp             HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHT
T ss_pred             cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            5773  578999999999999999999999999999899999999999998765

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.86  E-value=2.9e-09  Score=64.95  Aligned_cols=52  Identities=13%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~   72 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSI   72 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHh
Confidence            5766  788999999999999999999999999999889999999999997764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.86  E-value=4.7e-09  Score=70.33  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      +|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++......
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            6888889999999999999999999999999999999999999999988765443

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.86  E-value=5.8e-09  Score=64.61  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++|.+++.++++++++.++++.|.+++.+.+||+| +|+++|+|+..+++.......
T Consensus       112 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~  167 (185)
T 2j9l_A          112 NILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMA  167 (185)
T ss_dssp             GGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHC
T ss_pred             HhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhh
Confidence            35778889999999999999999999999999999 899999999999988765443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.85  E-value=6.1e-09  Score=65.13  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      |.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++......
T Consensus       105 ~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          105 RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence            456778999999999999999999999999999899999999999998877654

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.85  E-value=5.2e-09  Score=69.26  Aligned_cols=56  Identities=14%  Similarity=0.087  Sum_probs=51.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..+++.......
T Consensus       232 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          232 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHh
Confidence            57888899999999999999999999999999998999999999999988776543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.84  E-value=2.9e-09  Score=63.38  Aligned_cols=49  Identities=12%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++....
T Consensus        92 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           92 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            5679999999999999999999999999998899999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.84  E-value=1.4e-08  Score=61.85  Aligned_cols=52  Identities=10%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCE-eEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLH-LPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~-ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.+|++.|.+++.+. +||+|++ +++|+++..++....
T Consensus        20 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~   72 (157)
T 1o50_A           20 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVS   72 (157)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred             hcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHH
Confidence            589999999999999999999999999999 9999977 999999999997754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=4.7e-09  Score=62.40  Aligned_cols=54  Identities=6%  Similarity=-0.021  Sum_probs=46.9

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++  ++.++++++++.+|++.|.+++.+.+||+++ +|+++|+++..+++....
T Consensus         6 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~   62 (130)
T 3hf7_A            6 DIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT   62 (130)
T ss_dssp             HHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT
T ss_pred             HhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            36764  5789999999999999999999999999975 589999999999987653

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.83  E-value=2.9e-09  Score=63.67  Aligned_cols=53  Identities=19%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             CCCC--CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHH
Q 047148            1 MVMT--SSPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~--~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~   53 (84)
                      ++|+  +++.+++++.++.+|++.|.+++++.+||+|++ |+++|+++..+++...
T Consensus         7 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~   62 (136)
T 3lfr_A            7 DIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLI   62 (136)
T ss_dssp             HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG
T ss_pred             hccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH
Confidence            3687  467899999999999999999999999999987 7999999999987653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.82  E-value=1.7e-08  Score=63.04  Aligned_cols=54  Identities=11%  Similarity=0.117  Sum_probs=47.8

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++  ++.+++++.++.++++.|.+++++.+||+|++ |+++|+++..+++....
T Consensus        40 diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~   96 (173)
T 3ocm_A           40 SIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI   96 (173)
T ss_dssp             TTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             HhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh
Confidence            57874  57789999999999999999999999999976 89999999999987653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.81  E-value=2.8e-09  Score=65.66  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=46.5

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++  ++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..++..
T Consensus         8 dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~   60 (180)
T 3sl7_A            8 DFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA   60 (180)
T ss_dssp             HHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTC
T ss_pred             HhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHh
Confidence            35777  7889999999999999999999999999999999999999999863

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.81  E-value=8.1e-09  Score=62.74  Aligned_cols=50  Identities=18%  Similarity=0.218  Sum_probs=45.2

Q ss_pred             CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +.++++++++.++++.|.+++.+.+||+| +|+++|+++..+++.......
T Consensus       100 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          100 TLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             CCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             ceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence            67899999999999999999999999999 799999999999987765543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.80  E-value=9e-09  Score=68.84  Aligned_cols=52  Identities=15%  Similarity=0.402  Sum_probs=47.9

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      |++++.++++++++.++++.|.+++++++||+|++|+++|+++..+++....
T Consensus       196 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          196 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHH
T ss_pred             CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHh
Confidence            7788899999999999999999999999999998999999999999877654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.80  E-value=9.1e-09  Score=62.69  Aligned_cols=55  Identities=9%  Similarity=0.090  Sum_probs=47.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY   58 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~   58 (84)
                      +|.+++.++.+++++.++++.|.+++.  +||+|++|+++|+|+..+++........
T Consensus        91 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~  145 (159)
T 1yav_A           91 VMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIR  145 (159)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHH
Confidence            577888999999999999999998876  9999988999999999999877655443

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.80  E-value=5.3e-09  Score=63.89  Aligned_cols=52  Identities=17%  Similarity=0.157  Sum_probs=46.7

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC-cEEEEEEHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDG-GVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g-~l~Giv~~~~i~~~   52 (84)
                      ++|++  ++.++++++++.++++.|.+++++.+||+|+++ +++|+++..++...
T Consensus        42 diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   96 (156)
T 3oi8_A           42 DAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKY   96 (156)
T ss_dssp             GTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGG
T ss_pred             heeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            47876  678999999999999999999999999999874 99999999998765

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.79  E-value=5.6e-09  Score=63.46  Aligned_cols=54  Identities=24%  Similarity=0.313  Sum_probs=47.2

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEE-cC-CCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVI-DK-DGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVv-d~-~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++  ++.+++++.++.+|++.|.+++.+.+||+ |+ +|+++|+++..++.....
T Consensus        24 ~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A           24 DVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             HHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             eEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            36775  78899999999999999999999999999 64 489999999999987643

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.78  E-value=1.7e-08  Score=65.83  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=48.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~~~   53 (84)
                      .+|++++.++++++++.+|++.|.+++++++||+|+ +|+++|+++..++....
T Consensus         8 ~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~   61 (280)
T 3kh5_A            8 IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFM   61 (280)
T ss_dssp             TSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHT
T ss_pred             HhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHh
Confidence            367888999999999999999999999999999997 79999999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.78  E-value=2.7e-08  Score=64.84  Aligned_cols=55  Identities=9%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++......
T Consensus        88 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           88 EIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD  142 (280)
T ss_dssp             GTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGG
T ss_pred             HhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhh
Confidence            4788888999999999999999999999999999999999999999999876543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.77  E-value=1.9e-08  Score=71.78  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=50.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+......
T Consensus       223 dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          223 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             GTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            4788889999999999999999999999999999999999999999998776543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.77  E-value=1.6e-08  Score=67.62  Aligned_cols=49  Identities=12%  Similarity=0.183  Sum_probs=45.8

Q ss_pred             CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++.++++++++.++++.|.+++++++||+|++|+++|+|+..|++....
T Consensus       271 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          271 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             CCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            6789999999999999999999999999998899999999999987764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.75  E-value=1.6e-08  Score=62.59  Aligned_cols=54  Identities=13%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             CCCCCC----Ceee--eCCCCHHHHHHHHHhCCCCEeEEE--cCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSS----PECA--TMETTILDALHIMHDGKFLHLPVI--DKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~----~~~v--~~~~~l~~a~~~m~~~~~~~ipVv--d~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|+++    +.++  +++.++.+|++.|.+++.+.+||+  |++|+++|+|+..++.....
T Consensus        15 dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~   76 (185)
T 2j9l_A           15 DVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   76 (185)
T ss_dssp             HHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             HHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHH
Confidence            357765    6788  999999999999999999999999  78899999999999977654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.74  E-value=1.8e-08  Score=66.85  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=48.2

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|.+.|+++.+++++.++..+|...+++++||++ +|+++|||++.|++++..
T Consensus       194 ~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          194 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            4788999999999999999999999999999998 699999999999987764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.74  E-value=2.9e-08  Score=63.69  Aligned_cols=52  Identities=10%  Similarity=-0.013  Sum_probs=47.6

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhC---CCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDG---KFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~---~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++++.+++++.++.++++.|.++   +++.+||+|++|+++|+++..+++..
T Consensus        58 ~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  112 (205)
T 3kxr_A           58 RYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH  112 (205)
T ss_dssp             GGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             hhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC
Confidence            47999999999999999999999886   78999999999999999999998653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.72  E-value=1.1e-08  Score=61.88  Aligned_cols=48  Identities=23%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      +|++++.++++++++.++++.|.+++.+.+||+|++ +++|+|+..+++
T Consensus       100 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil  147 (149)
T 3k2v_A          100 VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLL  147 (149)
T ss_dssp             HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHT
T ss_pred             HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhh
Confidence            577788899999999999999999999999999965 999999999875

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.72  E-value=2.1e-08  Score=73.75  Aligned_cols=52  Identities=10%  Similarity=-0.002  Sum_probs=47.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++.+.|.+++++++||+ ++|+++|+|+..|+.+..
T Consensus       572 ~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~  623 (632)
T 3org_A          572 VPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGY  623 (632)
T ss_dssp             CSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECC
T ss_pred             hhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHH
Confidence            4799999999999999999999999999999999 589999999999986554

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.72  E-value=3.3e-08  Score=66.32  Aligned_cols=54  Identities=13%  Similarity=0.139  Sum_probs=48.9

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      |++++.++++++++.++++.|.+++++++||+|++|+++|+|+..+++......
T Consensus       271 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          271 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence            467888999999999999999999999999999889999999999998776543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.69  E-value=3.5e-08  Score=63.34  Aligned_cols=52  Identities=15%  Similarity=0.135  Sum_probs=47.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|.+++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++...
T Consensus        17 ~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~   68 (213)
T 1vr9_A           17 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL   68 (213)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS
T ss_pred             HhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh
Confidence            3688899999999999999999999999999999988999999999998643

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.67  E-value=4.6e-08  Score=65.65  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=47.6

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +++.++++++++.++++.|.+++++++||+|++|+++|+|+..+++.......
T Consensus       265 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          265 DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             CCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            37789999999999999999999999999998899999999999987765443

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.67  E-value=4.6e-08  Score=64.64  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|++++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++....
T Consensus       161 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          161 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            57788899999999999999999999999999998999999999999977665

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.65  E-value=4.8e-08  Score=70.31  Aligned_cols=55  Identities=22%  Similarity=0.359  Sum_probs=50.3

Q ss_pred             CCCCCCCeeeeCC-CCHHHHHHHHHhCCCCEeEEEc-CCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATME-TTILDALHIMHDGKFLHLPVID-KDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~-~~l~~a~~~m~~~~~~~ipVvd-~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++.++ +++.++++.|.+++++++||+| ++|+++|+|+..|++.....
T Consensus       388 diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~  444 (527)
T 3pc3_A          388 ELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVS  444 (527)
T ss_dssp             GGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHH
T ss_pred             HhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHh
Confidence            5799999999999 9999999999999999999999 78999999999999876644

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.64  E-value=6e-08  Score=65.07  Aligned_cols=53  Identities=17%  Similarity=0.372  Sum_probs=48.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|++++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++.....
T Consensus       190 ~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          190 GTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             SBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHT
T ss_pred             cccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhh
Confidence            57888899999999999999999999999999998899999999999977643

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.63  E-value=1.2e-07  Score=61.96  Aligned_cols=51  Identities=20%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|.+++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus        64 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~  114 (282)
T 2yzq_A           64 MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR  114 (282)
T ss_dssp             CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             HHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence            468888889999999999999999999999999998899999999999987

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.61  E-value=3.1e-08  Score=60.10  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=42.8

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +++.++++++++.+|++.|.+++.+.+||.+ +|+++|+++..++....
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~   68 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKV   68 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHS
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHH
Confidence            4458999999999999999999999999965 89999999999997764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.58  E-value=6.3e-08  Score=64.84  Aligned_cols=52  Identities=12%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhC-----CCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDG-----KFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~-----~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++++.+++++.++.++++.|.++     +++++||+|++|+++|+|+..+++..
T Consensus       141 ~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~  197 (286)
T 2oux_A          141 AIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN  197 (286)
T ss_dssp             HHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             HhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC
Confidence            36888999999999999999999886     78889999988999999999998654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.57  E-value=1.4e-07  Score=63.28  Aligned_cols=54  Identities=22%  Similarity=0.261  Sum_probs=48.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+|+ +|+++|+++..+++....
T Consensus       122 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~  176 (330)
T 2v8q_E          122 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  176 (330)
T ss_dssp             SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             hcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHH
Confidence            468888999999999999999999999999999998 799999999999877653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.57  E-value=1.5e-07  Score=62.51  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=47.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhC-----CCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDG-----KFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~-----~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++++.+++++.++.++++.|.++     ++..+||+|++|+++|+++..+++..
T Consensus       139 ~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  195 (278)
T 2yvy_A          139 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  195 (278)
T ss_dssp             GTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS
T ss_pred             hhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            47999999999999999999999876     78999999988999999999998754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.51  E-value=1.7e-07  Score=67.66  Aligned_cols=54  Identities=26%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             CCCC-CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            2 VMTS-SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         2 vm~~-~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      +|++ ++.+++++.++.++++.|.+++++.+||+|++|+++|+++..|++.....
T Consensus       180 vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          180 VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            5776 88899999999999999999999999999999999999999999877644

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.49  E-value=5.6e-07  Score=64.09  Aligned_cols=54  Identities=24%  Similarity=0.359  Sum_probs=49.6

Q ss_pred             CCCCC-CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS-SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~-~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++ ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++.....
T Consensus       156 ~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          156 EHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             TSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            46877 7889999999999999999999999999999999999999999987765

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.44  E-value=2.9e-07  Score=66.19  Aligned_cols=50  Identities=18%  Similarity=0.317  Sum_probs=45.6

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      ++|++++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+.
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR  142 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh
Confidence            36888999999999999999999999999999999889999999999986

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.35  E-value=5.4e-08  Score=69.97  Aligned_cols=55  Identities=22%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             CCCCCC--CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~--~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|+++  +.++++++++.++++.|.+++++.+||+|++|+++|+|+..|++.....
T Consensus       165 diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          165 DMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence            468776  8899999999999999999999999999999999999999999876643

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.33  E-value=1.7e-07  Score=68.93  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             CCCC--CCCeeeeCCCCHHHHHHHHH-hCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMT--SSPECATMETTILDALHIMH-DGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~--~~~~~v~~~~~l~~a~~~m~-~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      |+|+  +++.++++++++.++.+.|. +++.+.+||+|++|+++|+++..|+....
T Consensus       457 diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l  512 (632)
T 3org_A          457 EIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRL  512 (632)
T ss_dssp             HHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTT
T ss_pred             HHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHH
Confidence            4688  78889999999999999999 79999999999889999999999987543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.29  E-value=1e-06  Score=62.91  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=46.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhC-----CCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDG-----KFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~-----~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++++.++++++++.++++.|.++     ++..+||+|++++++|+++.++++..
T Consensus       159 ~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~  215 (473)
T 2zy9_A          159 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  215 (473)
T ss_dssp             TTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS
T ss_pred             HhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC
Confidence            57999999999999999999999875     57899999988999999999999764

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.28  E-value=2.4e-06  Score=60.88  Aligned_cols=51  Identities=12%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEc--CCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVID--KDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd--~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.+++++.++.++++.|.+++.+.+||+|  ++++++|+|+..|+..
T Consensus        94 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           94 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             hcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            47889999999999999999999999999999999  7899999999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.27  E-value=1.4e-06  Score=62.86  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC--CCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDK--DGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~--~g~l~Giv~~~~i~~   51 (84)
                      .|.+++.++++++++.++++.|.+++++.+||+|+  +++++|+|+.+|+..
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~  169 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF  169 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh
Confidence            57788899999999999999999999999999998  899999999999863

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.24  E-value=1.4e-07  Score=67.81  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=0.0

Q ss_pred             CCCC-C-CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMT-S-SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~-~-~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|+ + ++.+++++.++.++++.|.+++++.+||+|++|+++|+|+..|++...
T Consensus       151 ~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          151 AIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence            4677 3 688999999999999999999999999999999999999999987764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.23  E-value=1.5e-07  Score=67.23  Aligned_cols=54  Identities=20%  Similarity=0.306  Sum_probs=4.2

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++  ++.++++++++.++++.|.+++++.+||+|++|+++|+++..+++....
T Consensus       159 ~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          159 DLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             --------------------------------------------------CHHHHT
T ss_pred             HHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence            46777  8889999999999999999999999999999999999999999887754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.22  E-value=1.6e-07  Score=68.33  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=0.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|+++.++++++.++++|.++|.++++..+||+|++|+|+|+|+..|+.+...
T Consensus       204 evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          204 SVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ------------------------------------------------------
T ss_pred             hhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            579999899999999999999999999999999999999999999999976653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.18  E-value=2.1e-07  Score=66.49  Aligned_cols=51  Identities=24%  Similarity=0.350  Sum_probs=0.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+..
T Consensus        99 ~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A           99 NGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF  149 (494)
T ss_dssp             ---------------------------------------------------
T ss_pred             hcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence            468888999999999999999999999999999998899999999998864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.15  E-value=2.3e-06  Score=61.56  Aligned_cols=55  Identities=7%  Similarity=-0.019  Sum_probs=47.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC----CcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD----GGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~----g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++|++++.++++++++.+++++|.++++  +||+|++    |+++|+|+..|++.......
T Consensus       455 ~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          455 KALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             GGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            4788899999999999999999977654  7999974    89999999999988875543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.15  E-value=2.7e-07  Score=65.94  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+....
T Consensus       154 ~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          154 ELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence            46777788999999999999999999999999999999999999999987764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.11  E-value=4.1e-07  Score=65.40  Aligned_cols=49  Identities=16%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITH   51 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~   51 (84)
                      |++++.++++++++.++++.|.+++++.+||+|++   |+++|+|+..|++.
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~  154 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI  154 (503)
T ss_dssp             ----------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh
Confidence            88889999999999999999999999999999986   89999999999874

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.10  E-value=2.3e-07  Score=66.77  Aligned_cols=53  Identities=15%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             CCCC-C-CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMT-S-SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~-~-~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|+ + ++.+++++.++.++++.|.+++++.+||+|++|+++|+|+..|++...
T Consensus       153 diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          153 AVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             GTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             HHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            4677 3 578999999999999999999999999999999999999999987654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.99  E-value=8.8e-07  Score=63.60  Aligned_cols=49  Identities=18%  Similarity=0.369  Sum_probs=0.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT   50 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~   50 (84)
                      ++|.+++.+++++.++.++++.|.+++++.+||+| +++++|+|+.+|+.
T Consensus        92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~  140 (490)
T 4avf_A           92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLR  140 (490)
T ss_dssp             C-------------------------------------------------
T ss_pred             cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhh
Confidence            46888899999999999999999999999999999 89999999998885

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.96  E-value=3.5e-07  Score=65.72  Aligned_cols=52  Identities=21%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++..
T Consensus       177 ~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          177 EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             ----CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSC
T ss_pred             HHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHH
Confidence            46877  88999999999999999999999999999999999999987776543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.88  E-value=1.3e-06  Score=62.71  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=24.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~   51 (84)
                      ++|.+++.+++++.++.++++.|.+++++.+||+|+   +|+++|+|+..++..
T Consensus       112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~  165 (514)
T 1jcn_A          112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF  165 (514)
T ss_dssp             TTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-
T ss_pred             hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh
Confidence            468888899999999999999999999999999997   589999999888754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.59  E-value=9.2e-06  Score=59.24  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH   51 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~   51 (84)
                      |..+|++++|+.++.++.++|.++++..+||+|+   +++|+||++-+|+..
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf  195 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF  195 (556)
T ss_dssp             ----------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc
Confidence            5567899999999999999999999999999986   579999998888754

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.49  E-value=1.5e-05  Score=56.94  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      +|..++.+++++.++.++++.|.+++...+||+|+ ++++|+++.+++..
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~  146 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA  146 (486)
T ss_dssp             --------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc
Confidence            57788889999999999999999999999999997 99999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	7e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-04
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	8e-04
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.003
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.003
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.003

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (101), Expect = 2e-07
 Identities = 9/75 (12%), Positives = 28/75 (37%)

Query: 1  MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEW 60
          ++   + +   M T ++D + ++  G+   +P+ID++G +    +   +        Y  
Sbjct: 13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND 72

Query: 61 HYCNERDLTCCFYHL 75
             +  +        
Sbjct: 73 LSLSVGEALMRRSDD 87

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.5 bits (83), Expect = 7e-05
 Identities = 9/73 (12%), Positives = 20/73 (27%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWH 61
                      T +  AL  +     + LPV+D +G +   +D   +   +  +     
Sbjct: 9  YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKS 68

Query: 62 YCNERDLTCCFYH 74
                    +  
Sbjct: 69 TELAASSEEEWIL 81

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 34.6 bits (78), Expect = 5e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 1   MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54
             +           +++DA   M   +   +P+ID DG   + + V  +T   I
Sbjct: 111 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRI 164

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 33.7 bits (76), Expect = 8e-04
 Identities = 13/71 (18%), Positives = 24/71 (33%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWH 61
          +MT  P       T+ DA H+M      H+P++D +  +   +    +  A  S      
Sbjct: 7  MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA 66

Query: 62 YCNERDLTCCF 72
            +        
Sbjct: 67 QGDSLAFETPL 77

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.9 bits (74), Expect = 0.001
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 1   MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGV 40
                      +  T+   ++ + + +   L V+D+   V
Sbjct: 88  SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVV 127

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.1 bits (72), Expect = 0.003
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 1   MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39
                   C +   ++ DA+  +   K   LPVID + G
Sbjct: 100 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESG 138

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 31.8 bits (71), Expect = 0.003
 Identities = 11/73 (15%), Positives = 23/73 (31%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWH 61
          +M +   C     T+  A   M +     LP+   D  +   L    I    ++   + +
Sbjct: 6  IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPN 65

Query: 62 YCNERDLTCCFYH 74
               +L     +
Sbjct: 66 TATAGELARDSIY 78

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 32.1 bits (72), Expect = 0.003
 Identities = 16/73 (21%), Positives = 24/73 (32%)

Query: 2  VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWH 61
           MT         T++ +A  +M +     L VI+ DG V        I    I     + 
Sbjct: 10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD 69

Query: 62 YCNERDLTCCFYH 74
             ER +T     
Sbjct: 70 IPVERIMTRNLIT 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.34
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.27
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.22
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.2
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.19
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.18
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.17
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.15
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.14
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.12
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.12
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.11
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.1
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.1
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.09
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.09
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.08
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.08
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.08
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.04
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.04
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.03
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.01
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.0
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.0
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.0
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.99
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.97
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.96
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.96
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.95
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.95
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.95
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.94
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.93
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.92
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.92
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.92
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.89
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.89
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.88
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.87
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.83
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.78
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.7
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.69
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.62
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.59
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.59
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.5
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	92.34
d1tifa_	76	Translation initiation factor IF3, N-terminal doma	85.24

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.34  E-value=1.1e-12  Score=77.57  Aligned_cols=55  Identities=18%  Similarity=0.206  Sum_probs=50.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++++.++++.|.+++++++||+|++|+++|+|+..|++.....
T Consensus        69 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          69 DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999876543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=1.3e-11  Score=74.06  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      ++|++++.++++++++.+|++.|.+++++++||+|++|+++|+|+..+++.....+.
T Consensus        69 ~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2          69 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             TTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHH
T ss_pred             HhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999999999999987664443

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=2.1e-11  Score=72.91  Aligned_cols=55  Identities=27%  Similarity=0.369  Sum_probs=50.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..+++.....
T Consensus         7 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~   61 (142)
T d1pvma4           7 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP   61 (142)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGG
T ss_pred             HhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhh
Confidence            5899999999999999999999999999999999999999999999999766543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=3.3e-12  Score=74.74  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      |+|++++.+++++.++.+|++.|.+++++.+||+|++|+++|+++..|+....
T Consensus         5 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~   57 (123)
T d1y5ha3           5 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG   57 (123)
T ss_dssp             HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhh
Confidence            47999999999999999999999999999999999899999999999986543

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=2.7e-11  Score=70.76  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|.+++.++++++++.++++.|.+++++++||+|++|+++|+++..+++.....
T Consensus        64 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          64 MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             hccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            4688899999999999999999999999999999999999999999999876543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.18  E-value=1.9e-11  Score=72.69  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=51.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      |+|++++.+++++.++.+|++.|.+++++.+||+|++|+++|+++..+++......
T Consensus         6 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~   61 (139)
T d2o16a3           6 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS   61 (139)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999997766543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=1.7e-11  Score=72.23  Aligned_cols=54  Identities=20%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++++++++.+|++.|.+++++++||+|++|+++|+|+..|++....
T Consensus        78 ~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          78 DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             HHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            468888999999999999999999999999999999999999999999976553

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=4e-11  Score=72.02  Aligned_cols=51  Identities=18%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH   51 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~   51 (84)
                      ++|++++.++++++++.+|++.|.+++++++||+|++|+++|+++..|++.
T Consensus         8 ~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~   58 (156)
T d2yzqa1           8 PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR   58 (156)
T ss_dssp             TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred             HHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechh
Confidence            479999999999999999999999999999999999999999999888753

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=2.7e-11  Score=72.79  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      ++|++++.++++++++.++.+.|.+++++++||+|++|+++|+++..|+++.
T Consensus       103 ~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1         103 EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            4788889999999999999999999999999999999999999999998754

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.1e-10  Score=67.88  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|+.++.++++++++.++++.|.+++...+||+|++|+++|+++..+++......
T Consensus        64 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          64 NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             ccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence            36788889999999999999999999999999999999999999999998876543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.12  E-value=7.4e-11  Score=69.11  Aligned_cols=55  Identities=29%  Similarity=0.386  Sum_probs=50.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|.+++.++++++++.++.+.|.+++.+++||+|++|+++|+++..|+++....
T Consensus        71 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          71 EFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             hhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            3677888999999999999999999999999999999999999999999876543

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=1.1e-10  Score=68.87  Aligned_cols=54  Identities=24%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++++++++.+|++.|.+++++.+||+|++|+++|+++..|++....
T Consensus         9 ~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~   62 (132)
T d2yzia1           9 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVI   62 (132)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT
T ss_pred             HHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHh
Confidence            579999999999999999999999999999999999999999999999976543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.10  E-value=2.6e-10  Score=66.69  Aligned_cols=53  Identities=19%  Similarity=0.352  Sum_probs=47.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|++++.+++++.++.+++++|.+++++++||+|++|+++|+|+..|++....
T Consensus        65 ~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          65 MTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             CCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             eeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            35567789999999999999999999999999999999999999999987653

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.10  E-value=1.4e-10  Score=67.88  Aligned_cols=51  Identities=12%  Similarity=0.227  Sum_probs=46.6

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC--CCcEEEEEEHHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDK--DGGVAACLDVLQITHAA   53 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~--~g~l~Giv~~~~i~~~~   53 (84)
                      |.++|+++++++++.+|++.|.+++++.+||+|+  +|+++|+++..++....
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh
Confidence            6778899999999999999999999999999996  68999999999986654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.09  E-value=8.7e-11  Score=70.14  Aligned_cols=53  Identities=13%  Similarity=0.222  Sum_probs=48.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++.+++||+|++|+++|+++..+++...
T Consensus        73 ~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          73 LVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             GTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             cccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999987643

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.09  E-value=1.1e-10  Score=68.40  Aligned_cols=53  Identities=28%  Similarity=0.458  Sum_probs=48.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++.+++++.++++.|.+++++++||+| +|+++|+|+..|+++...
T Consensus        74 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          74 EIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             eeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            47889999999999999999999999999999998 699999999999987653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=2.7e-10  Score=67.51  Aligned_cols=54  Identities=9%  Similarity=0.208  Sum_probs=49.9

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|+++|.++++++++.+|++.|.+++++.+||+|++|+++|+++..|+.....
T Consensus         8 ~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~   61 (145)
T d1o50a3           8 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG   61 (145)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             HhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhh
Confidence            478999999999999999999999999999999999999999999999876654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.08  E-value=1e-10  Score=68.13  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      .+++.+++++.++.+|.++|.+++++++||+|++|+++|+|+..|++++
T Consensus        70 ~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          70 REDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             TTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            4567899999999999999999999999999999999999999999765

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.08  E-value=1e-10  Score=69.17  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=50.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|++++.+++++.++.++++.|.+++++++||+|++|+++|+|+..|++......
T Consensus        77 ~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          77 DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence            36888999999999999999999999999999999999999999999998766443

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=2.5e-10  Score=66.37  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.+|+++|.+++.+.+||+|++|+++|+++..+++...
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~   57 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD   57 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh
Confidence            47899999999999999999999999999999999999999999999987543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.04  E-value=2.4e-10  Score=68.29  Aligned_cols=51  Identities=14%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|.+.+.++++++++.++++.|.+++++++||+| +|+++|+|+..|+++..
T Consensus       108 ~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         108 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence            5778899999999999999999999999999998 69999999999998764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.03  E-value=2.5e-10  Score=67.68  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=49.9

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC   57 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~   57 (84)
                      +|++++.++++++++.+++++|.+++++++||+| +|+++|+++..+++.......
T Consensus        80 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3          80 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHH
T ss_pred             hhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            5788899999999999999999999999999999 589999999999988876553

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=1.7e-10  Score=67.23  Aligned_cols=50  Identities=16%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      +|++++.++++++++.++++.|.+++++++||+| +|+++|+++..|+++.
T Consensus        72 im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          72 LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             EeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            5778889999999999999999999999999999 5899999999998763

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.00  E-value=9.4e-10  Score=66.02  Aligned_cols=54  Identities=11%  Similarity=0.098  Sum_probs=48.2

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      +..++.++++++++.++++.|.+++++++||+|++|+++|+++..|++......
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence            445667899999999999999999999999999999999999999998876543

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=3.7e-11  Score=70.15  Aligned_cols=53  Identities=26%  Similarity=0.388  Sum_probs=34.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.+|++.|.+++++.+||+|++|++.|+++..+++...
T Consensus         5 diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~   57 (122)
T d2yzqa2           5 TIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP   57 (122)
T ss_dssp             HHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----
T ss_pred             cccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhh
Confidence            46899999999999999999999999999999999999999999998887654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=7.9e-10  Score=65.61  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      .|.+++.++.+++++.++++.|.+++++++||+|++|+++|+|+..++++...
T Consensus        89 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          89 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            36677889999999999999999999999999999999999999999987754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.99  E-value=2.8e-10  Score=66.05  Aligned_cols=52  Identities=21%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.++++.|.+++.+++||++ +|+++|+++..|++++.
T Consensus        68 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          68 EVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             HHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             eecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            36888999999999999999999999999999987 68999999999998764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.97  E-value=5.7e-10  Score=65.22  Aligned_cols=51  Identities=18%  Similarity=0.284  Sum_probs=46.3

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      |.+++.++.+++++.++++.|.+++++++||+|++|+++|+++..|++...
T Consensus        72 ~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          72 IANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             GCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             ccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            456678899999999999999999999999999999999999999997654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.96  E-value=1.1e-09  Score=63.96  Aligned_cols=55  Identities=15%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|++++.++++++++.+|.+.|.+++++.+||+| +|+++|+++..++.......
T Consensus         8 d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~   62 (127)
T d2ef7a1           8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG   62 (127)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhh
Confidence            57999999999999999999999999999999998 58999999999998765533

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.96  E-value=7.6e-10  Score=65.23  Aligned_cols=54  Identities=24%  Similarity=0.349  Sum_probs=49.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      ++|++++.++++++++.+|++.|.+++++.+||+|+++++.|+++..++.....
T Consensus         6 ~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~   59 (141)
T d3ddja1           6 VFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA   59 (141)
T ss_dssp             HHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             HhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhh
Confidence            479999999999999999999999999999999999999999999998866654

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=8.2e-10  Score=66.27  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEc-CCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVID-KDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd-~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|.+++.++++++++.+++++|.+++.+++||+| ++|+++|+|+..++++...
T Consensus       101 ~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2         101 DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             SSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             eeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            5778889999999999999999999999999998 4589999999999987654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.95  E-value=3e-09  Score=63.36  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC--CCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDK--DGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~--~g~l~Giv~~~~i~~~~~~~   56 (84)
                      |+|++++.++++++++.++++.|.+++++++||+|+  ++.++|+++..++.......
T Consensus        15 diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~   72 (160)
T d2d4za3          15 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   72 (160)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhc
Confidence            689999999999999999999999999999999984  47899999999987766543

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=5e-10  Score=65.77  Aligned_cols=53  Identities=13%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             CC--CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VM--TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm--~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|  .++..++.+++++.+|++.|.+++++++||+|++|+++|+++..++.....
T Consensus         7 ~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~   61 (132)
T d1yava3           7 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   61 (132)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             ccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhh
Confidence            45  356789999999999999999999999999999999999999999987754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=7.6e-10  Score=65.52  Aligned_cols=51  Identities=29%  Similarity=0.485  Sum_probs=46.4

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      .++.++++++++.+|++.|.+++++++||+|++|+++|+|+..+++.....
T Consensus        91 ~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          91 LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999887654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=1.3e-09  Score=64.12  Aligned_cols=55  Identities=16%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~   56 (84)
                      ++|.+++.++++++++.++++.|.+++++++||.+ +|+++|+++..|++......
T Consensus        74 ~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          74 RIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             GTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred             ecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            47889999999999999999999999999999876 69999999999998876543

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.1e-09  Score=64.79  Aligned_cols=53  Identities=15%  Similarity=0.414  Sum_probs=48.1

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|.+++.++.++.++.+|++.|.+++++++||+|++|+++|+++..|+.....
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~   66 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK   66 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHh
Confidence            46678889999999999999999999999999999999999999999877654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.6e-09  Score=64.04  Aligned_cols=51  Identities=12%  Similarity=0.125  Sum_probs=43.5

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +..++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|++...
T Consensus        87 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          87 DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             -----CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             cccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            345667899999999999999999999999999999999999999997764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.92  E-value=1.3e-09  Score=63.10  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=48.2

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      |+|++++.++++++|+.+|++.|.+++.+.+||.+ +|+++|+++..++.....
T Consensus         4 diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~   56 (120)
T d1pbja3           4 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIA   56 (120)
T ss_dssp             HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccc
Confidence            47999999999999999999999999999999987 589999999999977654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.89  E-value=3.8e-09  Score=64.36  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC-----cEEEEEEHHHHHHHHHhhhhhhh
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG-----GVAACLDVLQITHAAISMCYEWH   61 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g-----~l~Giv~~~~i~~~~~~~~~~~~   61 (84)
                      +|.+++.++++++++.+++..|.+++++++||+|++|     +++|+++..++++.......+..
T Consensus       112 ~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~~~~~  176 (179)
T d2ooxe1         112 AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETA  176 (179)
T ss_dssp             CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTCGGGG
T ss_pred             ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhhhHhh
Confidence            5778889999999999999999999999999998665     69999999999998765555443

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.89  E-value=1.6e-09  Score=63.23  Aligned_cols=55  Identities=13%  Similarity=0.089  Sum_probs=49.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEE--cCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVI--DKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVv--d~~g~l~Giv~~~~i~~~~~~   55 (84)
                      |+|++++.++++++++.++++.|.+++.+++||+  |.+++++|+++..++......
T Consensus         5 dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~   61 (131)
T d2riha1           5 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   61 (131)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccc
Confidence            5899999999999999999999999999999999  556899999999999876543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.88  E-value=1.4e-09  Score=63.58  Aligned_cols=49  Identities=12%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +++.+++++.++.+|++.|.+++++++||++ +|+++|+++..|++....
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~   61 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSY   61 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGG
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhh
Confidence            4678999999999999999999999999998 689999999999976543

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.3e-09  Score=65.10  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS   55 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~   55 (84)
                      ++|.+++.++++++++.++.++|.+++.+.+||.| +|+++|+|+..|++.....
T Consensus       104 ~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         104 NILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             GGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            46888899999999999999999999999999987 6899999999999876643

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=3.1e-09  Score=62.26  Aligned_cols=51  Identities=8%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +|++++.++++++++.++.+.|.+++  .+||+|++|+++|+|+..|++....
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHH
Confidence            57788899999999999999997764  5999999999999999999987754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.78  E-value=1e-08  Score=61.33  Aligned_cols=50  Identities=18%  Similarity=0.444  Sum_probs=45.9

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +++.++.++.++.+|++.|.+++++++||+|++|+++|+++..|+.....
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~   61 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ   61 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHG
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhc
Confidence            47789999999999999999999999999999999999999999876654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=1.1e-09  Score=65.37  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhC-----CCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDG-----KFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~-----~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      .+|++++.++++++|+.+|++.|.++     ++..+||+|++|+++|+++..++...
T Consensus         5 ~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~   61 (144)
T d2yvxa2           5 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA   61 (144)
T ss_dssp             GGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS
T ss_pred             cccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc
Confidence            47999999999999999999999776     37889999999999999999998654

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.75  E-value=8.8e-09  Score=60.22  Aligned_cols=52  Identities=12%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             CCCCCCeeeeCCCCHHHHHHHHHhC-----CCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            2 VMTSSPECATMETTILDALHIMHDG-----KFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         2 vm~~~~~~v~~~~~l~~a~~~m~~~-----~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      +|++++.+++++.++.+|++.|.++     +++.+||+|++|++.|+++..++....
T Consensus         6 iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~   62 (127)
T d2ouxa2           6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND   62 (127)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC
T ss_pred             hCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc
Confidence            6999999999999999999999765     478999999999999999999886543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.70  E-value=1.3e-10  Score=67.70  Aligned_cols=50  Identities=12%  Similarity=0.243  Sum_probs=17.8

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITHA   52 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~~   52 (84)
                      |.++|+++++++++.+|++.|.+++++++||+|+   +|+++|+++.+++...
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~   54 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL   54 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh
Confidence            6678899999999999999999999999999984   6799999998887543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=1.3e-08  Score=60.22  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148            5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~   54 (84)
                      +++.++.++.++.+|++.|.+++++.+||+|++|+++|+++..++.....
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~   69 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA   69 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGG
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhh
Confidence            56789999999999999999999999999999999999999999865543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.62  E-value=2e-08  Score=61.00  Aligned_cols=54  Identities=11%  Similarity=0.116  Sum_probs=46.2

Q ss_pred             CCCC--CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHHHHH
Q 047148            1 MVMT--SSPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITHAAI   54 (84)
Q Consensus         1 dvm~--~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~~~~   54 (84)
                      |+|.  .+.++++++.++.+|++.|.+++++.+||+|+ +++++|+++..|+.....
T Consensus        24 dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1          24 DVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             eeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            3565  35679999999999999999999999999984 589999999999876543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.59  E-value=2.8e-08  Score=57.95  Aligned_cols=51  Identities=14%  Similarity=0.244  Sum_probs=45.5

Q ss_pred             CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148            1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA   53 (84)
Q Consensus         1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~   53 (84)
                      ++|++++.++++++++.+|++.|.+++++++||+|+  +++|+++..++....
T Consensus         5 ~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~   55 (135)
T d3ddja2           5 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTV   55 (135)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGG
T ss_pred             EEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhh
Confidence            579999999999999999999999999999999974  799999988876543

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.3e-07  Score=56.24  Aligned_cols=56  Identities=7%  Similarity=0.071  Sum_probs=46.9

Q ss_pred             CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHHHHHhh
Q 047148            1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITHAAISM   56 (84)
Q Consensus         1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~~~~~~   56 (84)
                      |+|.+  +.+++++++++.+|++.|.++++..+||+|+ +++++|+++..|+.......
T Consensus        17 Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~   75 (159)
T d2v8qe2          17 DLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY   75 (159)
T ss_dssp             GGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHH
T ss_pred             eECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            45643  4578899999999999999999999999974 68899999999987766443

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.4e-07  Score=56.94  Aligned_cols=46  Identities=11%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             eeeCCCCHHHHHHHHHhCCCCEeEEE--cCCCcEEEEEEHHHHHHHHH
Q 047148            9 CATMETTILDALHIMHDGKFLHLPVI--DKDGGVAACLDVLQITHAAI   54 (84)
Q Consensus         9 ~v~~~~~l~~a~~~m~~~~~~~ipVv--d~~g~l~Giv~~~~i~~~~~   54 (84)
                      .+.+++++.++.+.|.+++++.+||+  +++|+++|+++..++.....
T Consensus        21 ~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~   68 (169)
T d2j9la1          21 LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   68 (169)
T ss_dssp             EESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHh
Confidence            34577899999999999999999999  55689999999999987664

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=92.34  E-value=0.00068  Score=41.37  Aligned_cols=50  Identities=8%  Similarity=-0.076  Sum_probs=41.4

Q ss_pred             CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148            3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA   52 (84)
Q Consensus         3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~   52 (84)
                      |.+...++..+.+-+.+..++.++..+..||+++++++.|.|+..++..+
T Consensus       143 ~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         143 DTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             hhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            43444566778888999999999999999999999999999988887544

>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Translation initiation factor IF3, N-terminal domain
family: Translation initiation factor IF3, N-terminal domain
domain: Translation initiation factor IF3, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.24  E-value=0.57  Score=24.25  Aligned_cols=54  Identities=15%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             CCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhhhhhc--cccchhhhHHHHHHHHh
Q 047148           27 KFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYC--NERDLTCCFYHLAKALF   80 (84)
Q Consensus        27 ~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   80 (84)
                      ..+.+-++|++|+-.|+++..+++.........+-..  ....-.|.+-+-+|..+
T Consensus        10 ~a~~VrlI~~~G~~lGv~~~~eAl~~A~~~glDLV~vs~~a~PPVcKi~dygK~~y   65 (76)
T d1tifa_          10 RAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRF   65 (76)
T ss_dssp             CCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHHHHHH
T ss_pred             cCCEEEEECCCCcEeCeecHHHHHHHHHHcCCCEEEecCCCCCCEEEEEcchhHHH
Confidence            3556778999999999999999876654443322222  22445666666655544