Citrus Sinensis ID: 047185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
PNIEKKLQKPQKNRSLANKSPDFIPGSVPIVENSNGSIGNESKGEKVEVLQRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDEA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccccccHHcccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccHcccccccccEEccccccccccccccHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
pniekklqkpqknrslankspdfipgsvpivensngsigneskgeKVEVLQRKSEEEKEWNEEDIEILKKQMvknpvgkpkRWEVIAEAFNGRHRVESVIKKAKELgekkiddsdSYNQFLKNRKAIDMRVVQEncedskkesqenvvvgggggvwnaGEDIALLNALkafpkdvplRWEKIAaavpgrskAACMKRFSDLkrdfrsskagdea
Flexible Loop (DISEMBL)
pniekklqkpqknrslankspdfipgsvpivensngsigneskgekvEVLQRkseeekewneedieilkkqmvknpvgkpkRWEVIAeafngrhrveSVIKKAkelgekkiddsdsyNQFLKNRKAIDMRVVQENCedskkesqenvVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIaaavpgrskaacMKRFsdlkrdfrsskagdea
Low Complexity Region (SEG)
PNIEKKLQKPQKNRSLANKSPDFIPGSVPIVENSNGSIGNESKGEKVEVLQRKSeeekewneedieILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENvvvgggggvWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDEA
Disordered region (IsUnstruct)
*******************************************************************************PKRWEVIAEAFNGRHRVESVI*********************************************************AGEDIALLNALKAFPKDVPLRWEKIAAAVPGR*************************
Disordered Region (DISOPRED)
****************************************************************IEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLK*************************************EDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDF**S******
Disordered Region (DISEMBL)
***************LANKSPDFIPGSVPIVENSNGSIG**********************EEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE***********NVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKR***********
Disordered Region (DISPRO)
**********************************************************EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKK********************************************VWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PNIEKKLQKPQKNRSLANKSPDFIPGSVPIVENSNGSIGNESKGEKVEVLQRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q6NWJ4	618	DnaJ homolog subfamily C	yes	no	0.682	0.236	0.343	7e-15
P54103	621	DnaJ homolog subfamily C	yes	no	0.719	0.247	0.345	5e-14
Q1RMH9	621	DnaJ homolog subfamily C	yes	no	0.714	0.246	0.349	9e-14
Q6P2Y3	620	DnaJ homolog subfamily C	yes	no	0.705	0.243	0.360	1e-13
Q99543	621	DnaJ homolog subfamily C	no	no	0.714	0.246	0.349	1e-13
Q4R8H2	621	DnaJ homolog subfamily C	N/A	no	0.714	0.246	0.349	2e-13
Q7TQ20	621	DnaJ homolog subfamily C	yes	no	0.719	0.247	0.339	2e-13
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.261	0.182	0.392	1e-05
P34454	414	Uncharacterized protein F	no	no	0.542	0.280	0.292	2e-05

>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 80/169 (47%), Gaps = 23/169 (13%)

Query: 60  WNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG------RHRVESVIKKAKELGEKKID- 112
           W+EED+++L K +   P G   RWEVIA   N       R   + VI KAK L  +K+D 
Sbjct: 450 WSEEDLQLLIKAVNLFPAGTNARWEVIANYMNQHSSSGVRRTAKDVINKAKTL--QKLDP 507

Query: 113 ------DSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGG--GGGVWNAGEDIAL 164
                 +  ++ +F K   A+   V      D+   S+    VG       W   E   L
Sbjct: 508 HQKDEINRKAFEKFKKEHSAVPPTV------DNAMPSERFDAVGADSNAAAWTTEEQKLL 561

Query: 165 LNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
             ALK +P     RWE+I+ AVPGRSK  CMKR+ +L    ++ KA  E
Sbjct: 562 EQALKTYPVSTAERWERISEAVPGRSKKDCMKRYKELVEMIKAKKAAQE 610

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.
Danio rerio (taxid: 7955)

>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 58  KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSD 115
           K W+E+D+++L K +   P G   RWEVIA   N  H    V + AK++    K +   D
Sbjct: 452 KNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNI-HSSSGVKRTAKDVISKAKSLQKLD 510

Query: 116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGV----WNAGEDIALLNALKAF 171
            + +   N+KA D +  +E+   S+ +S        G  +    W   E   L  ALK +
Sbjct: 511 PHQKDDINKKAFD-KFKKEHGVASQADSAAPSERFEGPCIDSTPWTTEEQKLLEQALKTY 569

Query: 172 PKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           P + P RWEKIA AVPGR+K  CM+R+ +L    ++ KA  E
Sbjct: 570 PVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAAQE 611

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation (By similarity). Specifically binds DNA sequence 5'-GTCAAGC-3'.

Mus musculus (taxid: 10090)

>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 58  KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSD 115
           K W+E+D+++L K +   P G   RWEVIA   N  H    V + AK++    K +   D
Sbjct: 452 KHWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNI-HSSSGVKRTAKDVIGKAKSLQKLD 510

Query: 116 SYNQFLKNRKAID-----MRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKA 170
            + +   N+KA D       VV +    +  E  E          W   E   L  ALK 
Sbjct: 511 PHQKDDINKKAFDKFKKEHGVVPQADNATPSERFEGPCTDFTP--WTTEEQKLLEQALKT 568

Query: 171 FPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           +P + P RWEKIA AVPGR+K  CMKR+ +L    ++ KA  E
Sbjct: 569 YPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 611

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Bos taurus (taxid: 9913)

>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 62  EEDIEILKKQMVKNPVGKPKRWEVIAEAFN-----GRHRV-ESVIKKAKELGEKKIDDSD 115
           E+D+++L K +   P G   RWEVIA   N     G  R  + VI KAK L +      D
Sbjct: 454 EDDLQLLIKAVNLFPAGTNARWEVIANYMNLHSISGIKRTSKDVINKAKSLQKLDPQQKD 513

Query: 116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDV 175
             N+   ++   + RVV ++  D+   S+           W   E   L  ALK +P + 
Sbjct: 514 DINKKAFDKFKKEHRVVPQSV-DNAVPSERFEGPAADMSPWTTEEQKLLEQALKTYPVNT 572

Query: 176 PLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           P RWEKIA AVPGRSK  CMKR+ +L    ++ KA  E
Sbjct: 573 PERWEKIAEAVPGRSKKDCMKRYKELVEMVKAKKAAQE 610

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.

Xenopus tropicalis (taxid: 8364)

>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1 SV=4

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 58  KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSD 115
           K W+E+D+++L K +   P G   RWEVIA   N  H    V + AK++    K +   D
Sbjct: 452 KNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNI-HSSSGVKRTAKDVIGKAKSLQKLD 510

Query: 116 SYNQFLKNRKAID-----MRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKA 170
            + +   N+KA D       VV +    +  E  E          W   E   L  ALK 
Sbjct: 511 PHQKDDINKKAFDKFKKEHGVVPQADNATPSERFEGPYTDFTP--WTTEEQKLLEQALKT 568

Query: 171 FPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           +P + P RWEKIA AVPGR+K  CMKR+ +L    ++ KA  E
Sbjct: 569 YPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 611

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Homo sapiens (taxid: 9606)

>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 58  KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSD 115
           K W+E+D+++L K +   P G   RWEVIA   N  H    V + AK++    K +   D
Sbjct: 452 KNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNI-HSSSGVKRTAKDVIGKAKSLQKLD 510

Query: 116 SYNQFLKNRKAID-----MRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKA 170
            + +   N+KA D       VV +    +  E  E          W   E   L  ALK 
Sbjct: 511 PHQKDDINKKAFDKFKKEHGVVPQADNAAPSERFEGPYTDFTP--WTTEEQKLLEQALKT 568

Query: 171 FPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           +P + P RWEKIA AVPGR+K  CMKR+ +L    ++ KA  E
Sbjct: 569 YPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 611

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Macaca fascicularis (taxid: 9541)

>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 58  KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSD 115
           K W+E+D+++L K +   P G   RWEVIA   N  H    V + AK++    K +   D
Sbjct: 452 KNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNI-HSSSGVKRTAKDVIGKAKSLQKLD 510

Query: 116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGV----WNAGEDIALLNALKAF 171
            + +   N+KA D +  +E+    + +S        G  +    W   E   L  ALK +
Sbjct: 511 PHQKDDINKKAFD-KFKKEHGVAPQADSAAPSERFEGPCIDSIPWTTEEQKLLEQALKTY 569

Query: 172 PKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           P + P RWEKIA AVPGR+K  CM+R+ +L    ++ KA  E
Sbjct: 570 PVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAAQE 611

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Rattus norvegicus (taxid: 10116)

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG 211
           W A E+ A  NAL  F ++ P RWE++A  VPG++    M+++ +L+ D  S +AG
Sbjct: 26  WTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSIEAG 81

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.

Antirrhinum majus (taxid: 4151)

>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans GN=F54F2.9 PE=4 SV=3

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 24/140 (17%)

Query: 74  KNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRV-V 132
           K P G P RWE +    N     E VI  A ++ + K +D   Y + L     I   V V
Sbjct: 297 KYPAGTPNRWEQMGRVLN--RSAEDVIAMAGKMKQMKQED---YTKLLMT--TIQQSVPV 349

Query: 133 QENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKA 192
           +E  ED                 W+  E  A   AL+ +PK    RWE+I+  +  ++K 
Sbjct: 350 EEKSEDD----------------WSQAEQKAFETALQKYPKGTDERWERISEEIGSKTKK 393

Query: 193 ACMKRFSDLKRDFRSSKAGD 212
             M RF  L    R  K  D
Sbjct: 394 QVMVRFKQLAEMIRKKKTND 413

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
255575744	315	DNA binding protein, putative [Ricinus c	0.934	0.634	0.632	5e-60
224138024	314	predicted protein [Populus trichocarpa]	0.925	0.630	0.623	7e-60
388496118	303	unknown [Medicago truncatula]	0.892	0.630	0.590	2e-56
357519859	349	DnaJ homolog subfamily C member [Medicag	0.892	0.547	0.590	2e-56
356512815	303	PREDICTED: uncharacterized protein LOC10	0.813	0.574	0.627	5e-55
449461543	309	PREDICTED: dnaJ homolog subfamily C memb	0.897	0.621	0.537	2e-51
225427302	299	PREDICTED: uncharacterized protein LOC10	0.728	0.521	0.621	9e-50
296087952	255	unnamed protein product [Vitis vinifera]	0.757	0.635	0.608	9e-50
18422552	309	duplicated SANT DNA-binding domain-conta	0.677	0.469	0.621	1e-48
9758732	352	unnamed protein product [Arabidopsis tha	0.677	0.411	0.621	2e-48

>gi|255575744|ref|XP_002528771.1| DNA binding protein, putative [Ricinus communis] gi|223531774|gb|EEF33593.1| DNA binding protein, putative [Ricinus communis]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 153/207 (73%), Gaps = 7/207 (3%)

Query: 12  KNRSLANKSPDFIPGSVPIVENSNGSIGNESKGE---KVEVLQRKSEEEKEWNEEDIEIL 68
           K RS   +S + + GS P+VE +NG    E K E   K E     +E EKEWNEED+EIL
Sbjct: 112 KKRSKQIRSEETVMGSAPVVETTNGLSIKERKIEPLTKSENWVVANEVEKEWNEEDLEIL 171

Query: 69  KKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAID 128
           KKQMVKNPVGKP+RWEVIAEAF GRH+VESVIK AKE+GE+K+DD+DSY +FLKNRK +D
Sbjct: 172 KKQMVKNPVGKPRRWEVIAEAFKGRHKVESVIKMAKEMGERKLDDNDSYARFLKNRKPLD 231

Query: 129 MRVVQENCEDSKKESQENVVVGGGGGV-WNAGEDIALLNALKAFPKDVPLRWEKIAAAVP 187
            R      E S  ES         GGV WNA EDIALLNALKAFPKD+P+RWEKIAAAVP
Sbjct: 232 TRA---QAEISGIESGAEARKDNDGGVGWNAVEDIALLNALKAFPKDIPMRWEKIAAAVP 288

Query: 188 GRSKAACMKRFSDLKRDFRSSKAGDEA 214
            +SKAACMKR ++LK+DFRSSKA  E+
Sbjct: 289 TKSKAACMKRIAELKKDFRSSKAAAES 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138024|ref|XP_002326499.1| predicted protein [Populus trichocarpa] gi|222833821|gb|EEE72298.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 131/210 (62%), Positives = 155/210 (73%), Gaps = 12/210 (5%)

Query: 11  QKNRSLANKSPDFIPGSVPIVENSNGSIGNESKGEKVEVLQR------KSEEEKEWNEED 64
           +K RS   +S + +   +  VE +NG     +KG+K E L        ++E EKEWNEED
Sbjct: 111 RKKRSKPIRSEEIVKNPIQNVEITNGL---STKGKKAETLASGEKGLVRNEGEKEWNEED 167

Query: 65  IEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNR 124
            EILKKQMVKNPVGKP+RWEVIAEAFNGR+RVESVIKKAKELGEKK+DDSDSY +FLKNR
Sbjct: 168 SEILKKQMVKNPVGKPRRWEVIAEAFNGRYRVESVIKKAKELGEKKMDDSDSYARFLKNR 227

Query: 125 KAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA 184
           K +D R   E+     +  +    VGGG G W  GEDIALLNALK F KDV +RWEKIAA
Sbjct: 228 KPLDTRA--ESGSQGLESDESGQEVGGGLG-WTTGEDIALLNALKVFSKDVAMRWEKIAA 284

Query: 185 AVPGRSKAACMKRFSDLKRDFRSSKAGDEA 214
           AVPG+SKAACMKR ++LK+DFRSSKAG E+
Sbjct: 285 AVPGKSKAACMKRVTELKKDFRSSKAGSES 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496118|gb|AFK36125.1| unknown [Medicago truncatula]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 19/210 (9%)

Query: 8   QKPQKNRSLANKSPDFI----PGSVPIVENSNGSIGNESKGEKVEVLQRKSEEEKEWNEE 63
           +K Q+ RS   +S D      P  V  ++N NG+ GN         L    EEEKEWNE+
Sbjct: 108 KKSQQRRSKQRRSDDVTAVVAPAPVVSLKNRNGN-GNGV------ALAAVVEEEKEWNED 160

Query: 64  DIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKN 123
           DIEILKKQMVKNP GKP RWE IAEAF GRH+ ESV+KK+KELGEKK+DDSDSY QFLK 
Sbjct: 161 DIEILKKQMVKNPPGKPGRWEAIAEAFGGRHKAESVVKKSKELGEKKVDDSDSYEQFLKK 220

Query: 124 RKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA 183
           RKA+D R+V+E  + +  E  E+        VW++ EDIALLNALKAFPKDV +RWEK+A
Sbjct: 221 RKALDKRLVEERGDLATVEKVES--------VWSSNEDIALLNALKAFPKDVAMRWEKVA 272

Query: 184 AAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           AAVPG+SKAACMKR ++LK+ FR+SK+G E
Sbjct: 273 AAVPGKSKAACMKRIAELKKGFRTSKSGSE 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519859|ref|XP_003630218.1| DnaJ homolog subfamily C member [Medicago truncatula] gi|357519879|ref|XP_003630228.1| DnaJ homolog subfamily C member [Medicago truncatula] gi|355524240|gb|AET04694.1| DnaJ homolog subfamily C member [Medicago truncatula] gi|355524250|gb|AET04704.1| DnaJ homolog subfamily C member [Medicago truncatula]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 19/210 (9%)

Query: 8   QKPQKNRSLANKSPDFI----PGSVPIVENSNGSIGNESKGEKVEVLQRKSEEEKEWNEE 63
           +K Q+ RS   +S D      P  V  ++N NG+ GN         L    EEEKEWNE+
Sbjct: 108 KKSQQRRSKQRRSDDVTAVVAPAPVVSLKNRNGN-GNGV------ALAAVVEEEKEWNED 160

Query: 64  DIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKN 123
           DIEILKKQMVKNP GKP RWE IAEAF GRH+ ESV+KK+KELGEKK+DDSDSY QFLK 
Sbjct: 161 DIEILKKQMVKNPPGKPGRWEAIAEAFGGRHKAESVVKKSKELGEKKVDDSDSYEQFLKK 220

Query: 124 RKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA 183
           RKA+D R+V+E  + +  E  E+        VW++ EDIALLNALKAFPKDV +RWEK+A
Sbjct: 221 RKALDKRLVEEGGDLATVEKVES--------VWSSNEDIALLNALKAFPKDVAMRWEKVA 272

Query: 184 AAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           AAVPG+SKAACMKR ++LK+ FR+SK+G E
Sbjct: 273 AAVPGKSKAACMKRIAELKKGFRTSKSGSE 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512815|ref|XP_003525111.1| PREDICTED: uncharacterized protein LOC100780658 [Glycine max]

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 140/185 (75%), Gaps = 11/185 (5%)

Query: 29  PIVENSNGSIGNESKGEKVEVLQRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE 88
           P+V  S      ES G  +E      EEEK W+EED+E+LKKQMVKNPVGKP RWE IA 
Sbjct: 130 PVVSVSAAEKRKESSG--IEKRATVVEEEKGWSEEDVEVLKKQMVKNPVGKPGRWEAIAA 187

Query: 89  AFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVV 148
           AF GRH V+SVIKKAKELGEK++DDS+SY  FLK RKA+D RVV+EN ++ +K      V
Sbjct: 188 AFGGRHGVDSVIKKAKELGEKRVDDSESYALFLKKRKALDKRVVEENADEGEK------V 241

Query: 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSS 208
           V  G   W++ EDIALLNALKAFPK+V +RWEK+AAAVPGRSKAACMKRF++LK+ FR++
Sbjct: 242 VDNG---WSSAEDIALLNALKAFPKEVSMRWEKVAAAVPGRSKAACMKRFAELKKGFRTA 298

Query: 209 KAGDE 213
           KA  E
Sbjct: 299 KAAAE 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461543|ref|XP_004148501.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus] gi|449510794|ref|XP_004163760.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/214 (53%), Positives = 149/214 (69%), Gaps = 22/214 (10%)

Query: 8   QKPQKNRSLANKSPDFIP-GSVPIVENSNGSIGNESKGEKVEVLQRKSE-------EEKE 59
           +KP + RS   +S D I   S+ + E S+  I N +      V  R S+       EE E
Sbjct: 109 KKPVQKRSKPRRSTDEIAVASIEVAEKSSAKIDNRNG-----VGHRSSKNGVDFAIEEAE 163

Query: 60  WNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQ 119
           W++ ++  LKKQ+ K+PVGKP+RWE+IAEAF GRH+VE+VIK AKE+GEKK+ D DSY Q
Sbjct: 164 WDDAELGFLKKQLAKHPVGKPRRWEIIAEAFGGRHKVENVIKMAKEMGEKKLGDEDSYAQ 223

Query: 120 FLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRW 179
           FLKNRK +D R+     E+  +E+    V GG    W++GEDIALLNALKAFPKD  +RW
Sbjct: 224 FLKNRKPMDKRI-----ENVNEEATTAAVAGG----WSSGEDIALLNALKAFPKDSAMRW 274

Query: 180 EKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           EKIAAAVPG++KAACMKR  +LK+DFR+SKAG+E
Sbjct: 275 EKIAAAVPGKTKAACMKRVGELKKDFRNSKAGNE 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427302|ref|XP_002279131.1| PREDICTED: uncharacterized protein LOC100255727 [Vitis vinifera]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 127/169 (75%), Gaps = 13/169 (7%)

Query: 46  KVEVLQRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE 105
           +VE     + EE EW + D+EILKKQ++K+PVG P RWE +AEAF GRH VESVI+KAK 
Sbjct: 142 RVEKRSEATAEESEWVDGDVEILKKQLLKHPVGMPGRWEAVAEAFRGRHGVESVIRKAKS 201

Query: 106 LGEKKIDDSDSYNQFLKNRKAIDMRVVQ-ENCEDSKKESQENVVVGGGGGVWNAGEDIAL 164
           LGE+K  DSDS+N+FLK+RK +D RV      E+ +KE             W++GEDIAL
Sbjct: 202 LGERKSSDSDSFNRFLKDRKPVDKRVEDGMAMENDEKEG------------WSSGEDIAL 249

Query: 165 LNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           LNALKAFPKDVP+RWEKIAAAVPGRSKAACMKRFS+LK+ FR+SKA  E
Sbjct: 250 LNALKAFPKDVPMRWEKIAAAVPGRSKAACMKRFSELKKGFRNSKAAAE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087952|emb|CBI35235.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 133/179 (74%), Gaps = 17/179 (9%)

Query: 31  VENSNGSIGNESKGEKVEVLQRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAF 90
           VE  NG    E + E        + EE++W + D+EILKKQ++K+PVG P RWE +AEAF
Sbjct: 28  VEGDNGLARVEKRSEV-------AAEERDWVDGDVEILKKQLLKHPVGMPGRWEAVAEAF 80

Query: 91  NGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVG 150
            GRH VESVI+KAK LGEKK+ DSDS+N+FLK+RK +D RV     ED+   + EN   G
Sbjct: 81  QGRHGVESVIRKAKSLGEKKLSDSDSFNRFLKDRKPVDKRV-----EDAM--AMEN---G 130

Query: 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK 209
                W++GEDIALLNALKAFPKDVP+RWEKIAAAVPGRSKAACMKRFS+LK+DFR+ K
Sbjct: 131 EKKEGWSSGEDIALLNALKAFPKDVPMRWEKIAAAVPGRSKAACMKRFSELKKDFRNPK 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422552|ref|NP_568645.1| duplicated SANT DNA-binding domain-containing protein [Arabidopsis thaliana] gi|13605893|gb|AAK32932.1|AF367345_1 AT5g45420/MFC19_9 [Arabidopsis thaliana] gi|18491137|gb|AAL69537.1| AT5g45420/MFC19_9 [Arabidopsis thaliana] gi|26450023|dbj|BAC42132.1| unknown protein [Arabidopsis thaliana] gi|332007865|gb|AED95248.1| duplicated SANT DNA-binding domain-containing protein [Arabidopsis thaliana]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/161 (62%), Positives = 121/161 (75%), Gaps = 16/161 (9%)

Query: 56  EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSD 115
           E K+W  E+IEILKKQ++K+P GKP RWE +A AF GR++ E+VIKKAKE+GEKKI +SD
Sbjct: 156 ETKDWTAEEIEILKKQLIKHPAGKPGRWETVASAFGGRYKTENVIKKAKEIGEKKIYESD 215

Query: 116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGG------VWNAGEDIALLNALK 169
            Y QFLKNRKA D R+V EN E+S          G GG       +W+ GEDIALLNALK
Sbjct: 216 DYAQFLKNRKASDPRLVDENEENS----------GAGGDAEGTKEIWSNGEDIALLNALK 265

Query: 170 AFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKA 210
           AFPK+  +RWEKIAAAVPG+SKAACMKR ++LK+ FRSSK 
Sbjct: 266 AFPKEAAMRWEKIAAAVPGKSKAACMKRVTELKKGFRSSKT 306

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758732|dbj|BAB09170.1| unnamed protein product [Arabidopsis thaliana]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/161 (62%), Positives = 121/161 (75%), Gaps = 16/161 (9%)

Query: 56  EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSD 115
           E K+W  E+IEILKKQ++K+P GKP RWE +A AF GR++ E+VIKKAKE+GEKKI +SD
Sbjct: 199 ETKDWTAEEIEILKKQLIKHPAGKPGRWETVASAFGGRYKTENVIKKAKEIGEKKIYESD 258

Query: 116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGG------VWNAGEDIALLNALK 169
            Y QFLKNRKA D R+V EN E+S          G GG       +W+ GEDIALLNALK
Sbjct: 259 DYAQFLKNRKASDPRLVDENEENS----------GAGGDAEGTKEIWSNGEDIALLNALK 308

Query: 170 AFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKA 210
           AFPK+  +RWEKIAAAVPG+SKAACMKR ++LK+ FRSSK 
Sbjct: 309 AFPKEAAMRWEKIAAAVPGKSKAACMKRVTELKKGFRSSKT 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2163573	309	maMYB "membrane anchored MYB"	0.649	0.449	0.636	2.2e-43
UNIPROTKB|Q6P2Y3	620	dnajc2 "DnaJ homolog subfamily	0.640	0.220	0.368	1e-14
UNIPROTKB|F1P3V8	621	DNAJC2 "Uncharacterized protei	0.640	0.220	0.349	2.2e-14
UNIPROTKB|Q99543	621	DNAJC2 "DnaJ homolog subfamily	0.640	0.220	0.349	7.6e-14
UNIPROTKB|Q4R8H2	621	DNAJC2 "DnaJ homolog subfamily	0.640	0.220	0.349	7.6e-14
UNIPROTKB|Q1RMH9	621	DNAJC2 "DnaJ homolog subfamily	0.640	0.220	0.349	9.7e-14
UNIPROTKB|F1SB54	621	DNAJC2 "Uncharacterized protei	0.640	0.220	0.349	9.7e-14
UNIPROTKB|E2RS54	627	DNAJC2 "Uncharacterized protei	0.640	0.218	0.349	9.9e-14
RGD|620524	621	Dnajc2 "DnaJ (Hsp40) homolog,	0.640	0.220	0.349	1.2e-13
MGI|MGI:99470	621	Dnajc2 "DnaJ (Hsp40) homolog,	0.640	0.220	0.342	2.6e-13

TAIR|locus:2163573 maMYB "membrane anchored MYB" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 91/143 (63%), Positives = 109/143 (76%)

Query:    67 ILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKA 126
             ILKKQ++K+P GKP RWE +A AF GR++ E+VIKKAKE+GEKKI +SD Y QFLKNRKA
Sbjct:   167 ILKKQLIKHPAGKPGRWETVASAFGGRYKTENVIKKAKEIGEKKIYESDDYAQFLKNRKA 226

Query:   127 IDMRVVQENCEDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAV 186
              D R+V EN E+S                W+ GEDIALLNALKAFPK+  +RWEKIAAAV
Sbjct:   227 SDPRLVDENEENSGAGGDAEGTKEI----WSNGEDIALLNALKAFPKEAAMRWEKIAAAV 282

Query:   187 PGRSKAACMKRFSDLKRDFRSSK 209
             PG+SKAACMKR ++LK+ FRSSK
Sbjct:   283 PGKSKAACMKRVTELKKGFRSSK 305

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0048767 "root hair elongation" evidence=IMP

UNIPROTKB|Q6P2Y3 dnajc2 "DnaJ homolog subfamily C member 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 53/144 (36%), Positives = 69/144 (47%)

Query:    76 PVGKPKRWEVIAEAFN-----GRHRV-ESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDM 129
             P G   RWEVIA   N     G  R  + VI KAK L +      D  N+   ++   + 
Sbjct:   468 PAGTNARWEVIANYMNLHSISGIKRTSKDVINKAKSLQKLDPQQKDDINKKAFDKFKKEH 527

Query:   130 RVVQENCEDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGR 189
             RVV ++  D+   S+           W   E   L  ALK +P + P RWEKIA AVPGR
Sbjct:   528 RVVPQSV-DNAVPSERFEGPAADMSPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGR 586

Query:   190 SKAACMKRFSDLKRDFRSSKAGDE 213
             SK  CMKR+ +L    ++ KA  E
Sbjct:   587 SKKDCMKRYKELVEMVKAKKAAQE 610

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|F1P3V8 DNAJC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 50/143 (34%), Positives = 67/143 (46%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    + + AK++    K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-LHSTTGIKRTAKDVINKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENCE---DSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    D+   S+           W   E   L  ALK +P + P RWEKIAAAVPGRS
Sbjct:   529 HGVVPQMDTAAPSERFEGSPLDSSPWTTEEQKLLEQALKTYPVNTPERWEKIAAAVPGRS 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CMKR+ +L    ++ KA  E
Sbjct:   589 KKDCMKRYKELVEMVKAKKAAQE 611

GO:0003677 "DNA binding" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q99543 DNAJC2 "DnaJ homolog subfamily C member 2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 50/143 (34%), Positives = 68/143 (47%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKE-LGE-KKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK+ +G+ K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENC---EDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    D+   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   529 HGVVPQADNATPSERFEGPYTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CMKR+ +L    ++ KA  E
Sbjct:   589 KKDCMKRYKELVEMVKAKKAAQE 611

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0051083 "'de novo' cotranslational protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|Q4R8H2 DNAJC2 "DnaJ homolog subfamily C member 2" [Macaca fascicularis (taxid:9541)]

 Score = 189 (71.6 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 50/143 (34%), Positives = 68/143 (47%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKE-LGE-KKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK+ +G+ K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENC---EDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    D+   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   529 HGVVPQADNAAPSERFEGPYTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CMKR+ +L    ++ KA  E
Sbjct:   589 KKDCMKRYKELVEMVKAKKAAQE 611

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q1RMH9 DNAJC2 "DnaJ homolog subfamily C member 2" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 9.7e-14, P = 9.7e-14
 Identities = 50/143 (34%), Positives = 68/143 (47%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKE-LGE-KKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK+ +G+ K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENC---EDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    D+   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   529 HGVVPQADNATPSERFEGPCTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CMKR+ +L    ++ KA  E
Sbjct:   589 KKDCMKRYKELVEMVKAKKAAQE 611

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1SB54 DNAJC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 9.7e-14, P = 9.7e-14
 Identities = 50/143 (34%), Positives = 68/143 (47%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKE-LGE-KKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK+ +G+ K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENC---EDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    D+   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   529 HGVVPQADNATPSERFEGPCTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CMKR+ +L    ++ KA  E
Sbjct:   589 KKDCMKRYKELVEMVKAKKAAQE 611

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RS54 DNAJC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 9.9e-14, P = 9.9e-14
 Identities = 50/143 (34%), Positives = 68/143 (47%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKE-LGE-KKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK+ +G+ K +   D + +   N+KA D    +
Sbjct:   476 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 534

Query:   134 ENC---EDSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    D+   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   535 HGVVPQADNATPSERFEGPCTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 594

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CMKR+ +L    ++ KA  E
Sbjct:   595 KKDCMKRYKELVEMVKAKKAAQE 617

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|620524 Dnajc2 "DnaJ (Hsp40) homolog, subfamily C, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 50/143 (34%), Positives = 68/143 (47%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKE-LGE-KKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK+ +G+ K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENCE---DSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    DS   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   529 HGVAPQADSAAPSERFEGPCIDSIPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CM+R+ +L    ++ KA  E
Sbjct:   589 KKDCMRRYKELVEMVKAKKAAQE 611

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IEA;ISO

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=ISO;ISS

GO:0043130 "ubiquitin binding" evidence=ISO;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;ISS

MGI|MGI:99470 Dnajc2 "DnaJ (Hsp40) homolog, subfamily C, member 2" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 49/143 (34%), Positives = 66/143 (46%)

Query:    76 PVGKPKRWEVIAEAFNGRHRVESVIKKAKEL--GEKKIDDSDSYNQFLKNRKAIDMRVVQ 133
             P G   RWEVIA   N  H    V + AK++    K +   D + +   N+KA D    +
Sbjct:   470 PAGTNSRWEVIANYMN-IHSSSGVKRTAKDVISKAKSLQKLDPHQKDDINKKAFDKFKKE 528

Query:   134 ENCE---DSKKESQENXXXXXXXXXWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRS 190
                    DS   S+           W   E   L  ALK +P + P RWEKIA AVPGR+
Sbjct:   529 HGVASQADSAAPSERFEGPCIDSTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRT 588

Query:   191 KAACMKRFSDLKRDFRSSKAGDE 213
             K  CM+R+ +L    ++ KA  E
Sbjct:   589 KKDCMRRYKELVEMVKAKKAAQE 611

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006260 "DNA replication" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:2000279 "negative regulation of DNA biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0029014701 hypothetical protein (314 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-05
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-04
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-04

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKR 203
            G W   ED  L+  +K + K+    WEKIA  +PGR+   C +R+ +L +
Sbjct: 1   KGEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLLK 48

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRF 198
           W   ED  LL A+K + K+    WEKIA  +PGR+   C +R+
Sbjct: 2   WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERW 41

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRF 198
           G W   ED  L+ A+K         W KIA  +PGR+   C  R+
Sbjct: 2   GPWTPEEDELLIEAVKKHGNG---NWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.9
PLN03212	249	Transcription repressor MYB5; Provisional	99.88
PLN03091	459	hypothetical protein; Provisional	99.86
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.82
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.32
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.32
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.25
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.19
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.16
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.05
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.04
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.94
PLN03212	249	Transcription repressor MYB5; Provisional	98.88
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.86
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.77
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.76
PLN03091	459	hypothetical protein; Provisional	98.56
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.55
KOG0051	607	consensus RNA polymerase I termination factor, Myb	97.92
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.81
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.62
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.52
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.49
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.34
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.29
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.27
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.15
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.05
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.04
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	97.0
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.38
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.37
COG5147	512	REB1 Myb superfamily proteins, including transcrip	96.34
KOG4167	907	consensus Predicted DNA-binding protein, contains	95.77
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.09
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	95.07
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.99
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	94.19
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.0
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	93.89
KOG0724	335	consensus Zuotin and related molecular chaperones	92.94
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.12
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.18
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.04
PRK13923	170	putative spore coat protein regulator protein YlbO	90.44
KOG4167	907	consensus Predicted DNA-binding protein, contains	90.42
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.75
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.48
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	89.07
smart00595	89	MADF subfamily of SANT domain.	87.93
KOG3841	455	consensus TEF-1 and related transcription factor,	87.19
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	85.37
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	84.63
KOG4329	445	consensus DNA-binding protein [General function pr	84.05
KOG1194	534	consensus Predicted DNA-binding protein, contains	83.96
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	83.77
KOG2656	445	consensus DNA methyltransferase 1-associated prote	83.58
KOG1194	534	consensus Predicted DNA-binding protein, contains	83.58
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	83.09
KOG4282	345	consensus Transcription factor GT-2 and related pr	82.34
PF10545	85	MADF_DNA_bdg: Alcohol dehydrogenase transcription	82.31

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.90  E-value=3.6e-23  Score=198.60  Aligned_cols=162  Identities=20%  Similarity=0.291  Sum_probs=129.4

Q ss_pred             ccccCCCcCCCCchhhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH-
Q 047185           31 VENSNGSIGNESKGEKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE-  105 (214)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~-  105 (214)
                      ..|||+||+|.++..++++||+|+    .++..|+.||++.|..+..-+  |. ..|++||..||++|+..||+.+++. 
T Consensus       223 ~~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~--~~-~~W~~IA~~Lgt~RS~yQC~~kF~t~  299 (939)
T KOG0049|consen  223 TAISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAP--KF-VSWPMIALNLGTNRSSYQCMEKFKTE  299 (939)
T ss_pred             HHhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhcc--cc-ccHHHHHHHhCCCcchHHHHHHHHHH
Confidence            349999999999999999999999    689999999999998877665  33 5899999999988999999999975 


Q ss_pred             ---hhhcccCCchhHHHHhhhhcccchhhhhc-------ccccccc-----ccccccc-CCCCCCCCCHHHHHHHHHHHH
Q 047185          106 ---LGEKKIDDSDSYNQFLKNRKAIDMRVVQE-------NCEDSKK-----ESQENVV-VGGGGGVWNAGEDIALLNALK  169 (214)
Q Consensus       106 ---l~~~~~~~~~~~~~~l~~~~~l~~r~~~~-------~~~~~~s-----~~~~~~~-~~~~~~~WT~eED~~L~~al~  169 (214)
                         |++..|.  +..|..|... +..+++.++       +++++.+     ++++.++ +++++++||.+||.+|..|+.
T Consensus       300 ~~~L~ekeWs--EEed~kL~al-V~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~  376 (939)
T KOG0049|consen  300 VSQLSEKEWS--EEEDTKLIAL-VKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVS  376 (939)
T ss_pred             HHHHHhhhcc--hhhhHHHHHH-HHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHH
Confidence               5555563  3444555443 112333222       2333322     5677664 789999999999999999999


Q ss_pred             hCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          170 AFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       170 ~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      +|+.   ..|.+|-..|||||+.||+.||...
T Consensus       377 ~Yg~---kdw~k~R~~vPnRSdsQcR~RY~nv  405 (939)
T KOG0049|consen  377 RYGA---KDWAKVRQAVPNRSDSQCRERYTNV  405 (939)
T ss_pred             HhCc---cchhhHHHhcCCccHHHHHHHHHHH
Confidence            9974   8999999999999999999999763

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.88  E-value=2e-22  Score=175.92  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=91.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE  134 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~  134 (214)
                      .+.++||.|||++|..+|++|+  . .+|..||..|+.+||.+||++||..++                    +|     
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG--~-~nW~~IAk~~g~gRT~KQCReRW~N~L--------------------~P-----   74 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEG--E-GRWRSLPKRAGLLRCGKSCRLRWMNYL--------------------RP-----   74 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhC--c-ccHHHHHHhhhcCCCcchHHHHHHHhh--------------------ch-----
Confidence            5688999999999999999994  3 589999999976799999999996553                    33     


Q ss_pred             ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185          135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD  204 (214)
Q Consensus       135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~  204 (214)
                                     .+.+++||.|||.+|+.++..|+    .+|..||..|||||+++|++||..+...
T Consensus        75 ---------------~I~kgpWT~EED~lLlel~~~~G----nKWs~IAk~LpGRTDnqIKNRWns~LrK  125 (249)
T PLN03212         75 ---------------SVKRGGITSDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLRK  125 (249)
T ss_pred             ---------------hcccCCCChHHHHHHHHHHHhcc----ccHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence                           58899999999999999999995    7999999999999999999999875544

>PLN03091 hypothetical protein; Provisional

Probab=99.86  E-value=3e-21  Score=179.60  Aligned_cols=104  Identities=16%  Similarity=0.234  Sum_probs=91.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE  134 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~  134 (214)
                      ..++.||.|||++|+++|.+|+  . ..|..||..++.+||.+||++||..++                    +|     
T Consensus        12 lrKg~WTpEEDe~L~~~V~kyG--~-~nWs~IAk~~g~gRT~KQCRERW~NyL--------------------dP-----   63 (459)
T PLN03091         12 LRKGLWSPEEDEKLLRHITKYG--H-GCWSSVPKQAGLQRCGKSCRLRWINYL--------------------RP-----   63 (459)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhC--c-CCHHHHhhhhccCcCcchHhHHHHhcc--------------------CC-----
Confidence            4678999999999999999994  4 589999999977899999999996553                    34     


Q ss_pred             ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185          135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDF  205 (214)
Q Consensus       135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v  205 (214)
                                     .+.+++||+|||.+|+.++..|+    .+|.+||.+|||||+.+|++||+.+.+..
T Consensus        64 ---------------~IkKgpWT~EED~lLLeL~k~~G----nKWskIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         64 ---------------DLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             ---------------cccCCCCCHHHHHHHHHHHHHhC----cchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence                           58899999999999999999995    69999999999999999999999765543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.82  E-value=7.3e-20  Score=159.33  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC  136 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~  136 (214)
                      +++||.|||.+|+..|.+|+.   .+|..||..+|-+|+.++|+.||..++                    .|       
T Consensus         9 kGpWt~EED~~L~~~V~~~G~---~~W~~i~k~~gl~R~GKSCRlRW~NyL--------------------rP-------   58 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGK---HNGTALPKLAGLRRCGKSCRLRWTNYL--------------------RP-------   58 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCC---CCcchhhhhcCCCccchHHHHHhhccc--------------------CC-------
Confidence            699999999999999999954   489999999997799999999996543                    23       


Q ss_pred             ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH-HHHHHh
Q 047185          137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD-LKRDFR  206 (214)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~-L~~~v~  206 (214)
                                   .++++.||+|||.+|..+...|    |++|..||..|||||+++++++|+- |++.+.
T Consensus        59 -------------~ikrg~fT~eEe~~Ii~lH~~~----GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~  112 (238)
T KOG0048|consen   59 -------------DLKRGNFSDEEEDLIIKLHALL----GNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLL  112 (238)
T ss_pred             -------------CccCCCCCHHHHHHHHHHHHHH----CcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence                         5899999999999999999999    5899999999999999999999975 444443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=6.6e-13  Score=88.57  Aligned_cols=46  Identities=41%  Similarity=0.818  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFSDL  201 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~~L  201 (214)
                      +++||++||.+|++++.+||.   .+|..||..|| |||..||+.||..|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            368999999999999999975   36999999999 99999999999876

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=3.5e-12  Score=120.90  Aligned_cols=107  Identities=28%  Similarity=0.506  Sum_probs=94.1

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhh
Q 047185           54 SEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQ  133 (214)
Q Consensus        54 ~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~  133 (214)
                      .++++.|+.-|++.|..+|.+|  |+ +.|..||..++ .+|+.||..+|.+.                    +||    
T Consensus         4 ~~kggvwrntEdeilkaav~ky--g~-nqws~i~sll~-~kt~rqC~~rw~e~--------------------ldp----   55 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKY--GK-NQWSRIASLLN-RKTARQCKARWEEW--------------------LDP----   55 (617)
T ss_pred             EEecceecccHHHHHHHHHHHc--ch-HHHHHHHHHHh-hcchhHHHHHHHHH--------------------hCH----
Confidence            4678999999999999999999  56 58999999998 79999999998654                    334    


Q ss_pred             cccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchh
Q 047185          134 ENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK  209 (214)
Q Consensus       134 ~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k  209 (214)
                                      .++...||.+||..|+.+...+|    ..|..||..| |||..||.+||..|+...-+.-
T Consensus        56 ----------------~i~~tews~eederlLhlakl~p----~qwrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   56 ----------------AIKKTEWSREEDERLLHLAKLEP----TQWRTIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             ----------------HHhhhhhhhhHHHHHHHHHHhcC----CccchHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence                            58899999999999999999986    6999999877 9999999999999988765543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.32  E-value=6.2e-12  Score=86.93  Aligned_cols=41  Identities=22%  Similarity=0.437  Sum_probs=35.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185           60 WNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE  105 (214)
Q Consensus        60 WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~  105 (214)
                      ||+||+.+|..++..|+    .+|..||++|| .||..||..||..
T Consensus         1 WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~-~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG----NDWKKIAEHLG-NRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT----S-HHHHHHHST-TS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC----cCHHHHHHHHC-cCCHHHHHHHHHH
Confidence            99999999999999994    37999999997 8999999999976

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.25  E-value=1.6e-11  Score=81.87  Aligned_cols=47  Identities=23%  Similarity=0.403  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      .++||.||+.+|.+++.+||.   ++|..||..||++||..||..+|..+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            368999999999999999964   37999999999789999999999765

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.19  E-value=9.4e-11  Score=113.87  Aligned_cols=117  Identities=15%  Similarity=0.262  Sum_probs=95.4

Q ss_pred             cCCCCchhhhHhhhhhc---cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCc
Q 047185           38 IGNESKGEKVEVLQRKS---EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDS  114 (214)
Q Consensus        38 ~~~~~~~~~~~~~~~~~---~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~  114 (214)
                      |+|.++.--|-.|.-+.   ++.+.||.+||.+|..||.+|+  . ..|-+|-+.++ +|+..||+.+|-..+.      
T Consensus       338 mpgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg--~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~------  407 (939)
T KOG0049|consen  338 MPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYG--A-KDWAKVRQAVP-NRSDSQCRERYTNVLN------  407 (939)
T ss_pred             cCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhC--c-cchhhHHHhcC-CccHHHHHHHHHHHHH------
Confidence            45655555554444444   6899999999999999999995  3 58999999999 7999999999966532      


Q ss_pred             hhHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHH-
Q 047185          115 DSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAA-  193 (214)
Q Consensus       115 ~~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~q-  193 (214)
                                                        .+.+.+.||-.||..|+.++.+|++   ..|.+||.++|.||..| 
T Consensus       408 ----------------------------------~s~K~~rW~l~edeqL~~~V~~YG~---g~WakcA~~Lp~~t~~q~  450 (939)
T KOG0049|consen  408 ----------------------------------RSAKVERWTLVEDEQLLYAVKVYGK---GNWAKCAMLLPKKTSRQL  450 (939)
T ss_pred             ----------------------------------HhhccCceeecchHHHHHHHHHHcc---chHHHHHHHccccchhHH
Confidence                                              1367899999999999999999987   59999999999999955 


Q ss_pred             --HHHHHHHH
Q 047185          194 --CMKRFSDL  201 (214)
Q Consensus       194 --c~~Ry~~L  201 (214)
                        |+.|+-.+
T Consensus       451 ~rrR~R~~~~  460 (939)
T KOG0049|consen  451 RRRRLRLIAA  460 (939)
T ss_pred             HHHHHHHHHH
Confidence              66666443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.16  E-value=8.2e-11  Score=75.88  Aligned_cols=46  Identities=39%  Similarity=0.804  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      .+||++||.+|+.++..|+.   .+|..||..+|+||..+|+.||..+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            68999999999999999963   69999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.05  E-value=5.3e-10  Score=71.10  Aligned_cols=44  Identities=43%  Similarity=0.831  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          155 VWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       155 ~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      +||.+||..|+.++..|+.   .+|..||..||+||..+|+.||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            5999999999999999963   6899999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.04  E-value=4e-10  Score=107.91  Aligned_cols=109  Identities=19%  Similarity=0.310  Sum_probs=94.3

Q ss_pred             hhhccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchh
Q 047185           51 QRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMR  130 (214)
Q Consensus        51 ~~~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r  130 (214)
                      -++..+.+.|+..||..|..++++|  |+ +.|.+||..|+ .++.+||..+|.+..                    +| 
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l--~~-nnws~vas~~~-~~~~kq~~~rw~~~l--------------------np-   68 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKL--GP-NNWSKVASLLI-SSTGKQSSNRWNNHL--------------------NP-   68 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhc--cc-ccHHHHHHHhc-ccccccccchhhhhh--------------------ch-
Confidence            4555678899999999999999999  45 57999999998 689999998884331                    22 


Q ss_pred             hhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185          131 VVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       131 ~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                                         .+....||.+||..|..+...++    .+|..||..+||||..+|.+||..+.++..+
T Consensus        69 -------------------~lk~~~~~~eed~~li~l~~~~~----~~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          69 -------------------QLKKKNWSEEEDEQLIDLDKELG----TQWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             -------------------hcccccccHHHHHHHHHHHHhcC----chhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence                               57899999999999999999995    6899999999999999999999988777655

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.94  E-value=1.2e-09  Score=75.38  Aligned_cols=43  Identities=33%  Similarity=0.681  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH-HH
Q 047185          156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD-LK  202 (214)
Q Consensus       156 WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~-L~  202 (214)
                      ||.+||.+|..++..|+    ..|..||..||.||..+|+.||.. |.
T Consensus         1 WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG----NDWKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT----S-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHC----cCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            99999999999999995    589999999966999999999998 54

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.88  E-value=2.2e-09  Score=94.37  Aligned_cols=55  Identities=24%  Similarity=0.431  Sum_probs=47.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC-CCCCHHHHHHHHHH-HHHHHhc
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV-PGRSKAACMKRFSD-LKRDFRS  207 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v-PGRT~~qc~~Ry~~-L~~~v~~  207 (214)
                      .+.+++||+|||.+|..++..|+.   .+|..||..+ ||||.+||++||.. |...+.+
T Consensus        22 glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k   78 (249)
T PLN03212         22 GMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR   78 (249)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcCCCcchHHHHHHHhhchhccc
Confidence            578999999999999999999974   6899999988 69999999999964 5555443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.86  E-value=7e-09  Score=66.71  Aligned_cols=47  Identities=30%  Similarity=0.456  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      +++||.+|+.+|..++..|+  . .+|..||..|+ +||..||..+|..+.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g--~-~~w~~Ia~~~~-~rt~~~~~~~~~~~~   47 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYG--K-NNWEKIAKELP-GRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence            36899999999999999995  3 58999999999 899999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.77  E-value=3.1e-08  Score=96.30  Aligned_cols=104  Identities=20%  Similarity=0.408  Sum_probs=86.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcc
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQEN  135 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~  135 (214)
                      ..+.||.||++.|.+++..++    ++|..|+..||  |.+..|+.+|+.+-...                         
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g----~~W~~Ig~~lg--r~P~~crd~wr~~~~~g-------------------------  431 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG----NDWKEIGKALG--RMPMDCRDRWRQYVKCG-------------------------  431 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc----ccHHHHHHHHc--cCcHHHHHHHHHhhccc-------------------------
Confidence            789999999999999999994    37999999998  99999999997663210                         


Q ss_pred             cccccccccccccCCCCCCCCCHHHHHHHHHHHH-------hC------------CCC---CCCcHHHHHhhCCCCCHHH
Q 047185          136 CEDSKKESQENVVVGGGGGVWNAGEDIALLNALK-------AF------------PKD---VPLRWEKIAAAVPGRSKAA  193 (214)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~-------~~------------p~~---~~~rW~kIA~~vPGRT~~q  193 (214)
                                   .....+.||.+|...|..++.       +|            |.+   .+-.|.-|++.+.+|+-.|
T Consensus       432 -------------~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~q  498 (607)
T KOG0051|consen  432 -------------SKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQ  498 (607)
T ss_pred             -------------cccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcch
Confidence                         125789999999999999984       33            222   4579999999999999999


Q ss_pred             HHHHHHHHHH
Q 047185          194 CMKRFSDLKR  203 (214)
Q Consensus       194 c~~Ry~~L~~  203 (214)
                      |+..|..|..
T Consensus       499 Cr~Kw~kl~~  508 (607)
T KOG0051|consen  499 CRYKWYKLTT  508 (607)
T ss_pred             HHHHHHHHHh
Confidence            9999988753

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.76  E-value=2.3e-08  Score=63.44  Aligned_cols=44  Identities=25%  Similarity=0.444  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      +||.+|+.+|..++..||.   .+|..||..|+ +||..||..+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            5999999999999999953   57999999998 69999999999764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=98.56  E-value=7e-08  Score=90.85  Aligned_cols=54  Identities=22%  Similarity=0.484  Sum_probs=46.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC-CCCCHHHHHHHHHH-HHHHHh
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV-PGRSKAACMKRFSD-LKRDFR  206 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v-PGRT~~qc~~Ry~~-L~~~v~  206 (214)
                      .+.++.||+|||++|..+|.+|+.   ..|..||..+ +|||.+||++||.. |...|.
T Consensus        11 klrKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~gRT~KQCRERW~NyLdP~Ik   66 (459)
T PLN03091         11 KLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK   66 (459)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccCcCcchHhHHHHhccCCccc
Confidence            478899999999999999999975   6899999877 59999999999975 544443

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.55  E-value=3.7e-08  Score=85.97  Aligned_cols=54  Identities=22%  Similarity=0.413  Sum_probs=48.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHH-HHHHHHhc
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFS-DLKRDFRS  207 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~-~L~~~v~~  207 (214)
                      ..+++||+|||..|...+..|+.   .+|..||..++ ||+.++|+.||. +|..+|++
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~---~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikr   62 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGK---HNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKR   62 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCC---CCcchhhhhcCCCccchHHHHHhhcccCCCccC
Confidence            34699999999999999999975   69999999999 999999999995 67777663

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=97.92  E-value=6e-05  Score=73.75  Aligned_cols=111  Identities=20%  Similarity=0.305  Sum_probs=79.0

Q ss_pred             CCCCCCHHHHHHHHHHHH-------hC------------CCC---CCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCC
Q 047185           56 EEKEWNEEDIEILKKQMV-------KN------------PVG---KPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDD  113 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~-------ky------------P~G---t~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~  113 (214)
                      +.+.||-||-+.|.++|.       .|            |.+   ....|-.|++.+| +|+..||..+|.++....+  
T Consensus       435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~-TR~~~qCr~Kw~kl~~~~s--  511 (607)
T KOG0051|consen  435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG-TRSRIQCRYKWYKLTTSPS--  511 (607)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc-CCCcchHHHHHHHHHhhHH--
Confidence            678999999999999995       22            233   3468999999777 8999999999987743211  


Q ss_pred             chhHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCH-HHHHHHHHHHHhCCC--CCCCcHHHHHhhCCCCC
Q 047185          114 SDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNA-GEDIALLNALKAFPK--DVPLRWEKIAAAVPGRS  190 (214)
Q Consensus       114 ~~~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~-eED~~L~~al~~~p~--~~~~rW~kIA~~vPGRT  190 (214)
                                                           .....|.. ...-.|++-|..++.  ..+..|.-|+...||.+
T Consensus       512 -------------------------------------~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~  554 (607)
T KOG0051|consen  512 -------------------------------------FNKRQESKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGES  554 (607)
T ss_pred             -------------------------------------hhcccccccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCC
Confidence                                                 12222222 122233444444433  34689999999999999


Q ss_pred             -HHHHHHHHHHHHHHHh
Q 047185          191 -KAACMKRFSDLKRDFR  206 (214)
Q Consensus       191 -~~qc~~Ry~~L~~~v~  206 (214)
                       ..+|+.+|..|+..|.
T Consensus       555 ~~~e~r~q~~~lk~~I~  571 (607)
T KOG0051|consen  555 TGEELRLQFERLKKKIP  571 (607)
T ss_pred             cHHHHHHHHHhHhhccC
Confidence             9999999999887654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.90  E-value=1.4e-05  Score=75.85  Aligned_cols=46  Identities=17%  Similarity=0.402  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ....||.+|+.+|.++|++|+    +.|++||..+| +||++|||.++-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg----DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG----DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh----hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            566999999999999999995    58999999999 89999999998654

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.81  E-value=8.2e-05  Score=51.90  Aligned_cols=47  Identities=15%  Similarity=0.187  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcch---hhHHHHcCCCC-CHHHHHHHHHHh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRW---EVIAEAFNGRH-RVESVIKKAKEL  106 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RW---e~IA~~lg~~R-T~~qc~~k~k~l  106 (214)
                      .-.||+||..++..|+..|+.   +.|   ..|++.|+.++ |..||..+++.+
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~---g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGG---PDWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            457999999999999999953   369   99999998777 999999998765

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.62  E-value=5.8e-05  Score=71.80  Aligned_cols=46  Identities=26%  Similarity=0.557  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      ....||.+|--+|+.++..|    ++.|.+||..|..||++||..||-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~y----gDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMY----GDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHh----hhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            56799999999999999999    48999999999999999999999765

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.52  E-value=0.00016  Score=68.13  Aligned_cols=48  Identities=25%  Similarity=0.461  Sum_probs=44.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      .+....||.+|+.+|+.|+..|+-   .+|.-||..|..||+.+|++||..
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~---GNW~dIA~hIGtKtkeeck~hy~k  116 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGF---GNWQDIADHIGTKTKEECKEHYLK  116 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCC---CcHHHHHHHHcccchHHHHHHHHH
Confidence            467789999999999999999976   599999999999999999999954

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.49  E-value=0.00013  Score=70.49  Aligned_cols=46  Identities=20%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ....||++|+-+|..+|.+|.    +.|.+||..+| +||.+|||.|+-.+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~----ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYG----DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhc----ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            467899999999999999994    58999999999 89999999999764

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.34  E-value=0.00083  Score=46.83  Aligned_cols=46  Identities=13%  Similarity=0.297  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcH---HHHHhhCC-CC-CHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRW---EKIAAAVP-GR-SKAACMKRFSDL  201 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW---~kIA~~vP-GR-T~~qc~~Ry~~L  201 (214)
                      .-.||+||...|+.||..|+.   ..|   .+|+..+. .+ |..||+.|+...
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~---g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGG---PDWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            458999999999999999974   479   99998654 34 999999999653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.29  E-value=0.00036  Score=67.43  Aligned_cols=48  Identities=27%  Similarity=0.562  Sum_probs=44.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      ......||..|.-+|+.++..|+    +.|.+||..|.+||..||..||..|
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~----ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYG----DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhc----ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            45678999999999999999994    7999999999999999999999765

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.27  E-value=0.00045  Score=65.21  Aligned_cols=50  Identities=12%  Similarity=0.159  Sum_probs=43.8

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      +-...||.+|--+|.+|+..|+-   ++|+-||++|| +||.++|.++|....-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~---GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGF---GNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCC---CcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            45678999999999999999954   58999999999 8999999999976533

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.15  E-value=0.00044  Score=50.54  Aligned_cols=58  Identities=22%  Similarity=0.502  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHh------CC--CCCC--CcHHHHHhhCC----CCCHHHHHHHHHHHHHHHhchhcc
Q 047185          154 GVWNAGEDIALLNALKA------FP--KDVP--LRWEKIAAAVP----GRSKAACMKRFSDLKRDFRSSKAG  211 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~------~p--~~~~--~rW~kIA~~vP----GRT~~qc~~Ry~~L~~~v~~~k~~  211 (214)
                      ..||.+|-.+|+.++..      |.  ....  .-|..||..|-    .||..||+.+|+.|...++..+..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~   73 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR   73 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            47999999999999887      21  1222  37999998763    799999999999999999887654

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.05  E-value=0.00046  Score=66.54  Aligned_cols=53  Identities=26%  Similarity=0.557  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH-HHHHh
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL-KRDFR  206 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L-~~~v~  206 (214)
                      ++.+.|+.-||..|-.++..|++   +.|.+|++.++-+|+.||+.||.+. -..++
T Consensus         5 ~kggvwrntEdeilkaav~kyg~---nqws~i~sll~~kt~rqC~~rw~e~ldp~i~   58 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGK---NQWSRIASLLNRKTARQCKARWEEWLDPAIK   58 (617)
T ss_pred             EecceecccHHHHHHHHHHHcch---HHHHHHHHHHhhcchhHHHHHHHHHhCHHHh
Confidence            56889999999999999999986   8999999999999999999999764 34343

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.04  E-value=0.0011  Score=48.39  Aligned_cols=51  Identities=24%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             CCCCHHHHHHHHHHHHh------CC--CCCCc--chhhHHHHc---CCCCCHHHHHHHHHHhhh
Q 047185           58 KEWNEEDIEILKKQMVK------NP--VGKPK--RWEVIAEAF---NGRHRVESVIKKAKELGE  108 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~k------yP--~Gt~~--RWe~IA~~l---g~~RT~~qc~~k~k~l~~  108 (214)
                      ..||.+|..+|+.+...      |.  +....  -|+.||+.|   |-.||+.||..||+.|..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~   65 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK   65 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            47999999999998866      21  12222  599999998   457999999999999854

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=97.00  E-value=0.015  Score=60.77  Aligned_cols=146  Identities=19%  Similarity=0.287  Sum_probs=95.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE  134 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~  134 (214)
                      ..=..||.-|-..+++++.+|  | ...-+.||.+|+ ++|.++|...++-+-.. ......|++++.+-.....+....
T Consensus       822 ~gf~~w~~~~f~~f~~~~~~~--g-r~~~~~i~~~~~-~k~~~ev~~y~~~f~~~-~~~~~~~~~~~~~ie~~e~~~~~~  896 (1033)
T PLN03142        822 EGFSTWSRRDFNAFIRACEKY--G-RNDIKSIASEME-GKTEEEVERYAKVFWER-YKELNDYDRIIKNIERGEARISRK  896 (1033)
T ss_pred             cCcCcccHHHHHHHHHHHHHh--C-HhHHHHHHHHhc-CCCHHHHHHHHHHHHHh-hhhhccHHHHHHHHHHHHHHHHHH
Confidence            445579999999999999999  4 368999999998 69999999776654322 112345666655421111100000


Q ss_pred             ----cc---ccccc-ccccc--c-cCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------CCCCCH
Q 047185          135 ----NC---EDSKK-ESQEN--V-VVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------VPGRSK  191 (214)
Q Consensus       135 ----~~---~~~~s-~~~~~--~-~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------vPGRT~  191 (214)
                          .+   ..... .-+..  . -...+...+|.+||..|+..+..|+-   .+|++|-..            +-.||+
T Consensus       897 ~~~~~~~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~---~~~~~~~~~i~~~~~f~fd~~~~srt~  973 (1033)
T PLN03142        897 DEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGY---GNWDELKAAFRTSPLFRFDWFVKSRTP  973 (1033)
T ss_pred             HHHHHHHHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhcc---chHHHHHHHHHhCCceeeehhhccCCH
Confidence                00   00000 00000  0 02345678999999999999999986   459998443            348999


Q ss_pred             HHHHHHHHHHHHHHhch
Q 047185          192 AACMKRFSDLKRDFRSS  208 (214)
Q Consensus       192 ~qc~~Ry~~L~~~v~~~  208 (214)
                      .++..|...|...|.+-
T Consensus       974 ~~~~~r~~~l~~~~~~e  990 (1033)
T PLN03142        974 QELARRCDTLIRLIEKE  990 (1033)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998887543

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.38  E-value=0.044  Score=47.28  Aligned_cols=119  Identities=9%  Similarity=0.120  Sum_probs=79.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC--CCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185           59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN--GRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC  136 (214)
Q Consensus        59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg--~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~  136 (214)
                      -|+.+||-+|+.+|..-     +.=+.|+..+.  ...|..++.+||..|+-...+...+...+-    .+.|....   
T Consensus         1 rW~~~DDl~Li~av~~~-----~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~----~l~p~~~~---   68 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQT-----NDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMR----NLHPELIA---   68 (199)
T ss_pred             CCCchhhHHHHHHHHHh-----cCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHH----hCCcchhh---
Confidence            39999999999999864     45777777553  367999999999988643322111111110    12221100   


Q ss_pred             ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH-----hhCCCCCHHHHHHHHHHHH
Q 047185          137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA-----AAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA-----~~vPGRT~~qc~~Ry~~L~  202 (214)
                                  ..-.+.+||.+|+.+|......... +...+++|=     .+-++||+.+-..||..|+
T Consensus        69 ------------~iq~kalfS~~EE~lL~~v~s~~~p-~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmk  126 (199)
T PF13325_consen   69 ------------AIQSKALFSKEEEQLLGTVASSSQP-SLETFQELLDKNRSVFHPSRTAKSLQDHWRLMK  126 (199)
T ss_pred             ------------cccccCCCCHHHHHHHHhhhhccCC-cHHHHHHHHHhChhhhccccCHHHHHHHHHHHH
Confidence                        1346789999999999997654422 235676664     3678999999999998664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.37  E-value=0.0056  Score=44.01  Aligned_cols=52  Identities=37%  Similarity=0.508  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCC---C----------CCcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPV---G----------KPKRWEVIAEAFN----GRHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~---G----------t~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~  108 (214)
                      +..||.+|..+|+..|.+||.   |          ...-|+.|+..|+    +.||+.||..+|..+..
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~   70 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS   70 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999864   2          1134999999883    37999999999988753

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=96.34  E-value=0.001  Score=64.43  Aligned_cols=105  Identities=16%  Similarity=0.290  Sum_probs=83.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE  134 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~  134 (214)
                      ...+.||.+|...|.+.+..+|+    .|..|...++  |=...|+.+|..+...+                        
T Consensus       289 ~~~~~wt~e~~~eL~~~~~~~~~----~w~~ig~~~~--rmp~~crd~wr~~~~~g------------------------  338 (512)
T COG5147         289 EQRGKWTKEEEQELAKLVVEHGG----SWTEIGKLLG--RMPNDCRDRWRDYVKCG------------------------  338 (512)
T ss_pred             hhhccCccccccccccccccccc----hhhHhhhhhc--cCcHHHHHHHhhhcccc------------------------
Confidence            56789999999999999999963    7999999997  88999999986652210                        


Q ss_pred             ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhC-C---CCCCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185          135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAF-P---KDVPLRWEKIAAAVPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~-p---~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~  203 (214)
                                    ..+...+||.+|..+|..-+... -   ......|..|+..++.+..-.|...|..|..
T Consensus       339 --------------~t~~~~~ws~eee~~l~~vv~e~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         339 --------------DTLKRNRWSIEEEELLDKVVNEMRLEAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             --------------CccCCCCCchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                          13678899999999887765521 1   1235899999999999999999888866654

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=95.77  E-value=0.018  Score=57.84  Aligned_cols=48  Identities=21%  Similarity=0.384  Sum_probs=42.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      ....-||+.|-++|..|+..|.+    ....|+..|+|||..||.+.|---+
T Consensus       617 ~gSd~WTp~E~~lF~kA~y~~~K----DF~~v~km~~~KtVaqCVeyYYtWK  664 (907)
T KOG4167|consen  617 AGSDKWTPLERKLFNKALYTYSK----DFIFVQKMVKSKTVAQCVEYYYTWK  664 (907)
T ss_pred             cCcccccHHHHHHHHHHHHHhcc----cHHHHHHHhccccHHHHHHHHHHHH
Confidence            45678999999999999999964    8999999999999999999984433

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.09  E-value=0.035  Score=51.24  Aligned_cols=49  Identities=24%  Similarity=0.448  Sum_probs=43.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      .+....|+..|+-+|..++...+-   ..|+-||..|..|++.+|++||-.+
T Consensus        60 pI~~e~WgadEEllli~~~~TlGl---GNW~dIadyiGsr~kee~k~HylK~  108 (432)
T COG5114          60 PIGEEGWGADEELLLIECLDTLGL---GNWEDIADYIGSRAKEEIKSHYLKM  108 (432)
T ss_pred             cccCCCcCchHHHHHHHHHHhcCC---CcHHHHHHHHhhhhhHHHHHHHHHH
Confidence            356789999999999999999875   5999999999999999999999543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=95.07  E-value=0.062  Score=42.68  Aligned_cols=58  Identities=24%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------CCCCCHHHHHHHHHHHHHHHhc
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------VPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                      ...+..+|.+||..|+..+..||-+.++.|++|-..            +-.||+.++..|...|...|.+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            456889999999999999999999888999998764            3589999999999999887754

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.99  E-value=0.055  Score=38.77  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCC---C----------CCCcHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhch
Q 047185          153 GGVWNAGEDIALLNALKAFPK---D----------VPLRWEKIAAAV-----PGRSKAACMKRFSDLKRDFRSS  208 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~---~----------~~~rW~kIA~~v-----PGRT~~qc~~Ry~~L~~~v~~~  208 (214)
                      ...||.+|...|...+..|+.   +          -..-|..|+..|     +.||..||+..|..|+..++..
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~   75 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK   75 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999854   1          125799999655     3799999999999999887654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=94.19  E-value=0.082  Score=38.92  Aligned_cols=56  Identities=25%  Similarity=0.407  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHhC------C-CC--CCCcHHHHHhhCC-----CCCHHHHHHHHHHHHHHHhchhc
Q 047185          155 VWNAGEDIALLNALKAF------P-KD--VPLRWEKIAAAVP-----GRSKAACMKRFSDLKRDFRSSKA  210 (214)
Q Consensus       155 ~WT~eED~~L~~al~~~------p-~~--~~~rW~kIA~~vP-----GRT~~qc~~Ry~~L~~~v~~~k~  210 (214)
                      .||+++++.|+.++...      + .+  .+.-|..|+..|-     ..|..||++||+.|+.+....+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~   70 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE   70 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999887655      1 11  1357999986543     34789999999999988776554

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.00  E-value=0.075  Score=49.14  Aligned_cols=48  Identities=17%  Similarity=0.289  Sum_probs=42.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      +-...|+.+|--+|++++...+-   ++|+-||.++| .|+.++|..+|-.+
T Consensus        61 I~~e~WgadEEllli~~~~TlGl---GNW~dIadyiG-sr~kee~k~HylK~  108 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGL---GNWEDIADYIG-SRAKEEIKSHYLKM  108 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCC---CcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence            56678999999999999999943   58999999999 89999999998543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=93.89  E-value=0.068  Score=44.70  Aligned_cols=50  Identities=22%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCC---CcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVP---LRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~---~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      ..+.||.|||.+|...+-.|=..++   .-.+.++..+ +||...|-=||+..+
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~V   55 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYV   55 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHH
Confidence            5679999999999999888755444   3457777777 999999999998654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=0.13  Score=46.71  Aligned_cols=60  Identities=23%  Similarity=0.401  Sum_probs=53.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCC----CCCcHHHHHhhCCC-CCHHHHHHHHHHHHHHHhchhccc
Q 047185          153 GGVWNAGEDIALLNALKAFPKD----VPLRWEKIAAAVPG-RSKAACMKRFSDLKRDFRSSKAGD  212 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~----~~~rW~kIA~~vPG-RT~~qc~~Ry~~L~~~v~~~k~~~  212 (214)
                      ..-|+.++.+.++.||..|...    ++++|.+++..||+ .+..+.+.+|..++.++..+.+++
T Consensus        31 ~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~   95 (335)
T KOG0724|consen   31 LSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQ   95 (335)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccC
Confidence            4569999999999999999864    67899999999999 999999999999999998877654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.12  E-value=0.27  Score=39.03  Aligned_cols=53  Identities=17%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-----------CCCCHHHHHHHHHHhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-----------GRHRVESVIKKAKELG  107 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-----------~~RT~~qc~~k~k~l~  107 (214)
                      .++..||++||.-|.-.+.+|+-++.+.|+.|-..+-           .+||+.++-.|...|.
T Consensus        47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (118)
T PF09111_consen   47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI  110 (118)
T ss_dssp             SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence            4678999999999999999998788899999998773           2688888888876653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.18  E-value=0.27  Score=46.42  Aligned_cols=56  Identities=23%  Similarity=0.311  Sum_probs=47.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh-----CCC-CCHHHHHHHHHHHHHHHhchhc
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA-----VPG-RSKAACMKRFSDLKRDFRSSKA  210 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~-----vPG-RT~~qc~~Ry~~L~~~v~~~k~  210 (214)
                      .....||.+|-..|...++.|.    -||.-||..     .+. ||.++.++||-+.+..+....+
T Consensus       128 l~dn~WskeETD~LF~lck~fD----LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  128 LNDNSWSKEETDYLFDLCKRFD----LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             hccccccHHHHHHHHHHHHhcC----eeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            5568999999999999999994    688888865     776 9999999999998887766554

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.04  E-value=0.64  Score=42.40  Aligned_cols=60  Identities=22%  Similarity=0.408  Sum_probs=47.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCC------CCCCcHHHHHhhC----CCCCHHHHHHHHHHHHHHHhchhccc
Q 047185          153 GGVWNAGEDIALLNALKAFPK------DVPLRWEKIAAAV----PGRSKAACMKRFSDLKRDFRSSKAGD  212 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~------~~~~rW~kIA~~v----PGRT~~qc~~Ry~~L~~~v~~~k~~~  212 (214)
                      ...|+.+|=..|+.+......      ....-|..||..+    --||+.||+++|+.|...++..++..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            489999999999998765422      1256799999733    36999999999999999998887653

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=90.44  E-value=0.29  Score=41.32  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH--hhCCCCCHHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA--AAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA--~~vPGRT~~qc~~Ry~~L~  202 (214)
                      .....||.|+|.+|...+-.|...++.+-.-+.  ...-+||..+|.-||+..+
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~v   56 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVV   56 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHH
Confidence            457899999999999998888776665543332  2334999999999996543

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=90.42  E-value=0.44  Score=48.29  Aligned_cols=48  Identities=8%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      .....||..|..++.+|+-.|    ...+..|+.+|. ++|+.||.+.|-..+
T Consensus       617 ~gSd~WTp~E~~lF~kA~y~~----~KDF~~v~km~~-~KtVaqCVeyYYtWK  664 (907)
T KOG4167|consen  617 AGSDKWTPLERKLFNKALYTY----SKDFIFVQKMVK-SKTVAQCVEYYYTWK  664 (907)
T ss_pred             cCcccccHHHHHHHHHHHHHh----cccHHHHHHHhc-cccHHHHHHHHHHHH
Confidence            567789999999999999998    368999999998 799999999985543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.75  E-value=0.61  Score=44.16  Aligned_cols=46  Identities=17%  Similarity=0.341  Sum_probs=40.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE  105 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~  105 (214)
                      ...-.||.+|++.+-||+.++  ||  .+.+|+..++ +|..+||-.+|..
T Consensus       363 ~~~~~Ws~~e~ekFYKALs~w--Gt--dF~LIs~lfP-~R~RkqIKaKfi~  408 (507)
T COG5118         363 KGALRWSKKEIEKFYKALSIW--GT--DFSLISSLFP-NRERKQIKAKFIK  408 (507)
T ss_pred             CCCCcccHHHHHHHHHHHHHh--cc--hHHHHHHhcC-chhHHHHHHHHHH
Confidence            455689999999999999999  67  5999999999 7999999988864

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.48  E-value=1.1  Score=32.76  Aligned_cols=50  Identities=28%  Similarity=0.459  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHh------CC-CCC--CcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185           59 EWNEEDIEILKKQMVK------NP-VGK--PKRWEVIAEAFN----GRHRVESVIKKAKELGE  108 (214)
Q Consensus        59 ~WT~EE~~lL~kav~k------yP-~Gt--~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~  108 (214)
                      .||.+++..|..++..      +| .|.  +..|..|+..|.    ...|..||..||+.++.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            4999999999888733      33 232  245999999884    46799999999998864

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=89.07  E-value=0.39  Score=40.22  Aligned_cols=50  Identities=12%  Similarity=0.243  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHhC--CCCCC-cchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVKN--PVGKP-KRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~ky--P~Gt~-~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ...||+|||.+|...|-.|  -|||. .-.+-++..|+  ||+--|-.||+....
T Consensus         4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR   56 (161)
T TIGR02894         4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence            4579999999999999765  34553 45999999997  999999999987654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>smart00595 MADF subfamily of SANT domain

Probab=87.93  E-value=0.71  Score=33.50  Aligned_cols=30  Identities=37%  Similarity=0.767  Sum_probs=25.3

Q ss_pred             CcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185          177 LRWEKIAAAVPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       177 ~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                      .-|..||..+ |.|..+|+.+|+.|+..+..
T Consensus        28 ~aW~~Ia~~l-~~~~~~~~~kw~~LR~~y~~   57 (89)
T smart00595       28 KAWEEIAEEL-GLSVEECKKRWKNLRDRYRR   57 (89)
T ss_pred             HHHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence            4699999999 45999999999999876554

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=87.19  E-value=1.2  Score=42.09  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             hhhhhc-cCCCCCCHHHHHHHHHHHHhCCC-CC-----------CcchhhHHHHc----CCCCCHHHHHHHHHHhhh
Q 047185           49 VLQRKS-EEEKEWNEEDIEILKKQMVKNPV-GK-----------PKRWEVIAEAF----NGRHRVESVIKKAKELGE  108 (214)
Q Consensus        49 ~~~~~~-~~~~~WT~EE~~lL~kav~kyP~-Gt-----------~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~  108 (214)
                      +|..+. ...+.|+.+=.+.+..|+..||+ |+           -+|=|.||.|+    |.+||.+||.-+-+=+.+
T Consensus        67 ~~~D~~~daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar  143 (455)
T KOG3841|consen   67 KFTDNQRDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR  143 (455)
T ss_pred             cCCccccccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            344444 56789999999999999999998 43           26889999999    568999998876654443

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=85.37  E-value=2.2  Score=30.37  Aligned_cols=48  Identities=23%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CCCCHHHHHHHHHHHHhC---CCC--CCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185           58 KEWNEEDIEILKKQMVKN---PVG--KPKRWEVIAEAFNGRHRVESVIKKAKE  105 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~ky---P~G--t~~RWe~IA~~lg~~RT~~qc~~k~k~  105 (214)
                      .++|.|||.+|.+-|..|   |+.  ...=|..+++.-++++|-..-..+|..
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K   55 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLK   55 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            478999999999999654   321  123499999987767898888888843

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=84.63  E-value=1.8  Score=30.87  Aligned_cols=50  Identities=18%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCC-----CCCcHHHHHhhCC-CCCHHHHHHHHH-HHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKD-----VPLRWEKIAAAVP-GRSKAACMKRFS-DLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~-----~~~rW~kIA~~vP-GRT~~qc~~Ry~-~L~  202 (214)
                      ..+.|.+||.+|..-|..+...     +..=|..++...| ..|-..-++||. .|.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~   58 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR   58 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999776432     2357999998888 888888899994 443

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=84.05  E-value=1.7  Score=41.06  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=39.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH-hhCCCCCHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA-AAVPGRSKAACMKRFSD  200 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA-~~vPGRT~~qc~~Ry~~  200 (214)
                      -.-..||.+|=+.|+++|+.|++    ....|. ..|+.||.-+|...|-.
T Consensus       275 d~l~~wsEeEcr~FEegl~~yGK----DF~lIr~nkvrtRsvgElVeyYYl  321 (445)
T KOG4329|consen  275 DDLSGWSEEECRNFEEGLELYGK----DFHLIRANKVRTRSVGELVEYYYL  321 (445)
T ss_pred             cccccCCHHHHHHHHHHHHHhcc----cHHHHHhcccccchHHHHHHHHHH
Confidence            34579999999999999999975    677776 68999999999998843

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=83.96  E-value=2.6  Score=40.75  Aligned_cols=47  Identities=21%  Similarity=0.389  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ...||.||+.+|.++.+.|  |+  +..+|-.+|+ .|+..++++.|-..+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~--GK--~F~kIrq~LP-~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFF--GK--DFHKIRQALP-HRSLASLVQYYYSWKK  233 (534)
T ss_pred             cccchHHHHHHHHHHHHHh--cc--cHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence            4579999999999999999  44  7999999999 8999999988865543

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=83.77  E-value=3.4  Score=26.75  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          160 EDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       160 ED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      =|..|..+|..-+   ...|..||..+ |=|...|..|++.|.
T Consensus         4 ~D~~Il~~Lq~d~---r~s~~~la~~l-glS~~~v~~Ri~rL~   42 (42)
T PF13404_consen    4 LDRKILRLLQEDG---RRSYAELAEEL-GLSESTVRRRIRRLE   42 (42)
T ss_dssp             HHHHHHHHHHH-T---TS-HHHHHHHH-TS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CccHHHHHHHH-CcCHHHHHHHHHHhC
Confidence            3778888888764   47899999988 999999999998873

...

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=83.58  E-value=1.1  Score=42.47  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=42.2

Q ss_pred             hccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHH-----cCCCCCHHHHHHHHHH
Q 047185           53 KSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEA-----FNGRHRVESVIKKAKE  105 (214)
Q Consensus        53 ~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~-----lg~~RT~~qc~~k~k~  105 (214)
                      +.-+...||.+|..-|-.++..|-    -||-.||..     ++..||+++.-++|=.
T Consensus       126 ~~l~dn~WskeETD~LF~lck~fD----LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~  179 (445)
T KOG2656|consen  126 AHLNDNSWSKEETDYLFDLCKRFD----LRFFVIADRYDNQQYKKSRTVEDLKERYYS  179 (445)
T ss_pred             HhhccccccHHHHHHHHHHHHhcC----eeEEEEeeccchhhccccccHHHHHHHHHH
Confidence            335668899999999999999994    699999997     6767999999999954

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=83.58  E-value=2.8  Score=40.53  Aligned_cols=48  Identities=25%  Similarity=0.344  Sum_probs=42.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      .-...||.|+--+|+++...|+    .+..+|...+|.||-......|-..+
T Consensus       185 ~~~d~WT~Ed~vlFe~aF~~~G----K~F~kIrq~LP~rsLaSlvqyYy~~K  232 (534)
T KOG1194|consen  185 EFPDEWTAEDIVLFEQAFQFFG----KDFHKIRQALPHRSLASLVQYYYSWK  232 (534)
T ss_pred             CCcccchHHHHHHHHHHHHHhc----ccHHHHHHHccCccHHHHHHHHHHHH
Confidence            4568999999999999999996    59999999999999999998885543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=83.09  E-value=2.1  Score=40.67  Aligned_cols=45  Identities=20%  Similarity=0.339  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS  199 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~  199 (214)
                      ....+||..|-..|-.||..++    .....|+..+|.|.-.|++..|.
T Consensus       363 ~~~~~Ws~~e~ekFYKALs~wG----tdF~LIs~lfP~R~RkqIKaKfi  407 (507)
T COG5118         363 KGALRWSKKEIEKFYKALSIWG----TDFSLISSLFPNRERKQIKAKFI  407 (507)
T ss_pred             CCCCcccHHHHHHHHHHHHHhc----chHHHHHHhcCchhHHHHHHHHH
Confidence            4567999999999999999995    68999999999999999999985

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=82.34  E-value=2.8  Score=38.18  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=38.4

Q ss_pred             CCCCCHHHHHHHHHHHHh----CCCCCC--cchhhHHHH---cCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVK----NPVGKP--KRWEVIAEA---FNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~k----yP~Gt~--~RWe~IA~~---lg~~RT~~qc~~k~k~l~  107 (214)
                      ...|+.+|...|+.+-..    |.-|+.  .-|+.||..   .|-.||+.||..++..|.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            378999999999998644    222221  249999994   366899999999998764

>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats

Probab=82.31  E-value=1.8  Score=30.45  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=27.1

Q ss_pred             CcHHHHHhhCCC-CCHHHHHHHHHHHHHHHhchh
Q 047185          177 LRWEKIAAAVPG-RSKAACMKRFSDLKRDFRSSK  209 (214)
Q Consensus       177 ~rW~kIA~~vPG-RT~~qc~~Ry~~L~~~v~~~k  209 (214)
                      .-|..||..+.+ -+..+|+.||..|+..+...+
T Consensus        27 ~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~   60 (85)
T PF10545_consen   27 EAWQEIARELGKEFSVDDCKKRWKNLRDRYRREL   60 (85)
T ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence            469999999963 578899999999998776654

The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		2e-09

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
           W   E   L  ALK +P + P RW+KIA AVPGR+K  CMKR+ +L    ++ KA  E
Sbjct: 6   WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
2cjj_A	93	Radialis; plant development, DNA-binding protein,	3e-16
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	5e-14
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-04
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	2e-13
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	1e-12
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	1e-04
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 69.9 bits (171), Expect = 3e-16
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKA 210
           G G  W+A E+ A   AL  + KD P RW  +A AV GR+     K +  L  D +  ++
Sbjct: 6   GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 211 G 211
           G
Sbjct: 66  G 66

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 63.7 bits (155), Expect = 5e-14
 Identities = 18/71 (25%), Positives = 26/71 (36%)

Query: 137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMK 196
                 S            W   +   L  AL+ +P+     W+KIA  VP +SK  C+ 
Sbjct: 2   SSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIA 61

Query: 197 RFSDLKRDFRS 207
           R+  L     S
Sbjct: 62  RYKLLVSGPSS 72

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 41  ESKGEKVEVLQRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVI 100
            S        +R    E+ W +   ++L+  + + P G    W+ IA     + + +  I
Sbjct: 2   SSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKED-CI 60

Query: 101 KKAKELGE 108
            + K L  
Sbjct: 61  ARYKLLVS 68

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 19/54 (35%), Positives = 24/54 (44%)

Query: 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204
           G G  W   E+IA   AL    KD P RW+K+A  V GR+     K +      
Sbjct: 18  GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYELEHHH 71

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 60.1 bits (145), Expect = 1e-12
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 53  KSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKK 110
            S    EW EED+  L + MVK P G P RWE IA        V  V  KAK+L +  
Sbjct: 4   GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDSV 59

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKA 210
           G   W   +   L  ++  FP   P RWEKIA  + GRS      +   LK     S  
Sbjct: 7   GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPG 64

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRF 198
            G   W A E++ALL A+          W+ +A  +  ++K  C K +
Sbjct: 6   SGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHY 50

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRF 198
           W   E + LL AL+ +  D    W K++  V  R++  C+  F
Sbjct: 21  WTEQETLLLLEALEMYKDD----WNKVSEHVGSRTQDECILHF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 23/211 (10%), Positives = 57/211 (27%), Gaps = 71/211 (33%)

Query: 12  KNRSLANKSPDFIPGSVPIVENSNGSIGNESKGEKVEVLQRKSEEEKEWNEEDIEILKKQ 71
           + + +     DF+  +     + +      +  E   +L +       + +   + L ++
Sbjct: 273 RFKQVT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-------YLDCRPQDLPRE 321

Query: 72  MVK-NPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFL-----KNRK 125
           ++  NP                  R  S+I       E   D   +++ +      K   
Sbjct: 322 VLTTNP------------------RRLSII------AESIRDGLATWDNWKHVNCDKLTT 357

Query: 126 AIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVP-------LR 178
            I+  +      + +K                      + + L  FP           L 
Sbjct: 358 IIESSLNVLEPAEYRK----------------------MFDRLSVFPPSAHIPTILLSLI 395

Query: 179 WEKIAAAVPGRSKAACMKRFSDLKRDFRSSK 209
           W  +  +          K  S +++  + S 
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-SLVEKQPKEST 425

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAV-PGRSKAACMKRFSDL 201
           W A E++ L++A +         W  IA  V   R+K  C   +   
Sbjct: 12  WGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKT 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.94
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.93
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.93
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.93
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.92
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.9
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.87
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.72
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.72
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.64
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.62
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.6
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.52
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.52
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.52
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.49
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.49
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.48
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.47
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.46
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.46
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.44
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.42
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.42
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.38
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.38
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.38
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.37
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.37
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.35
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.34
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.34
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.3
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.26
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.91
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.24
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.22
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.21
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.19
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.18
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.18
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.15
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.14
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.12
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.12
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.1
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.05
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.03
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.03
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.97
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.96
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.9
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.87
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.86
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.83
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.83
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.81
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.8
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.8
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.23
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.66
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.6
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.57
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.53
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.42
2crg_A	70	Metastasis associated protein MTA3; transcription	98.35
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.32
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.31
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	98.28
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.26
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.57
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.24
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.12
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.1
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.09
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	98.05
2crg_A	70	Metastasis associated protein MTA3; transcription	97.95
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.7
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.66
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.53
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.41
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.35
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.31
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.13
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.92
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.87
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	96.79
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.4
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	95.88
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.24
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.1
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	90.46

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.94  E-value=1.8e-26  Score=176.93  Aligned_cols=103  Identities=17%  Similarity=0.263  Sum_probs=91.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC  136 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~  136 (214)
                      ++.||.|||.+|.++|.+||.   .+|..||.+|+ +||+.||.++|..++                    +|       
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L--------------------~p-------   49 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI-TRNPRQCRERWNNYI--------------------NP-------   49 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT-TSCHHHHHHHHHHHS--------------------SS-------
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC-CCCHHHHHHHHHHHH--------------------cc-------
Confidence            478999999999999999953   58999999998 799999999997653                    23       


Q ss_pred             ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185          137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                                   .+..++||+|||.+|+.++..|+    .+|..||.+|||||+.||++||..|.....+
T Consensus        50 -------------~i~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           50 -------------ALRTDPWSPEEDMLLDQKYAEYG----PKWNKISKFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             -------------CCTTCCCCHHHHHHHHHHHHHTC----SCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             -------------cccccccCHHHHHHHHHHHHHhC----cCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence                         47889999999999999999995    5999999999999999999999988766543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.93  E-value=4.4e-26  Score=173.54  Aligned_cols=99  Identities=23%  Similarity=0.350  Sum_probs=88.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcc
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQEN  135 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~  135 (214)
                      ..++||.|||.+|.++|.+||.   .+|..||.+|+ +||..||..+|..++                    +|      
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l--------------------~p------   52 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL--------------------NP------   52 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHTT--------------------CC------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhc-CCCHHHHHHHHHhcc--------------------CC------
Confidence            5789999999999999999953   47999999998 799999999997653                    23      


Q ss_pred             cccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          136 CEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                                    .+..++||+|||.+|+.++..|+    .+|..||..|||||+.||++||+.|+
T Consensus        53 --------------~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~~  101 (105)
T 1gv2_A           53 --------------EVKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHWNSTM  101 (105)
T ss_dssp             --------------CCCCCCCCHHHHHHHHHHHHHHS----SCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             --------------cccccCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                          47889999999999999999995    69999999999999999999998764

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.93  E-value=1e-25  Score=177.42  Aligned_cols=104  Identities=21%  Similarity=0.435  Sum_probs=92.7

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE  134 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~  134 (214)
                      ...+.||.|||++|.++|.+|  |+  +|..||.+|+ +||..||..+|..++                    +|     
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~--G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l--------------------~p-----   58 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQH--GS--DWKMIAATFP-NRNARQCRDRWKNYL--------------------AP-----   58 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHH--TT--CHHHHHHTCT-TCCHHHHHHHHHHHT--------------------ST-----
T ss_pred             CCCCCCCHHHHHHHHHHHHHh--CC--CHHHHHHHcC-CCCHHHHHHHHhhhc--------------------cc-----
Confidence            467899999999999999999  44  8999999998 799999999997653                    23     


Q ss_pred             ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185          135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                                     .+..++||+|||.+|+.++..|+    .+|..||..|||||+.||++||..|+..+..
T Consensus        59 ---------------~~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~  112 (126)
T 3osg_A           59 ---------------SISHTPWTAEEDALLVQKIQEYG----RQWAIIAKFFPGRTDIHIKNRWVTISNKLGI  112 (126)
T ss_dssp             ---------------TSCCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred             ---------------ccccccCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence                           47789999999999999999995    6899999999999999999999998876543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.93  E-value=1.7e-25  Score=176.18  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=89.7

Q ss_pred             CchhhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhH
Q 047185           42 SKGEKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSY  117 (214)
Q Consensus        42 ~~~~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~  117 (214)
                      +++...+.-|..+    .+.++||.|||.+|.++|++|+.   .+|..||.+|+ +||..||..+|..++          
T Consensus         8 Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l----------   73 (128)
T 1h8a_C            8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLK-GRIGKQCRERWHNHL----------   73 (128)
T ss_dssp             --------------CTTCCCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSS-SCCHHHHHHHHHHTT----------
T ss_pred             CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhc-CCcHHHHHHHHHHhc----------
Confidence            4444444456665    47899999999999999999953   47999999998 799999999997653          


Q ss_pred             HHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHH
Q 047185          118 NQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKR  197 (214)
Q Consensus       118 ~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~R  197 (214)
                                +|                    .+..++||+|||.+|+.++..|+    .+|..||..|||||+.+|++|
T Consensus        74 ----------~p--------------------~~~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~r  119 (128)
T 1h8a_C           74 ----------NP--------------------EVKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAVKNH  119 (128)
T ss_dssp             ----------CS--------------------SSCCSCCCHHHHHHHHHHHHHHC----SCHHHHGGGSTTCCHHHHHHH
T ss_pred             ----------cc--------------------ccccccCCHHHHHHHHHHHHHHC----cCHHHHHHHCCCCCHHHHHHH
Confidence                      23                    47889999999999999999995    699999999999999999999


Q ss_pred             HHHHH
Q 047185          198 FSDLK  202 (214)
Q Consensus       198 y~~L~  202 (214)
                      |+.|+
T Consensus       120 ~~~~~  124 (128)
T 1h8a_C          120 WNSTM  124 (128)
T ss_dssp             HHTTT
T ss_pred             HHHHH
Confidence            98764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.92  E-value=6.8e-25  Score=173.66  Aligned_cols=99  Identities=16%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC  136 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~  136 (214)
                      +++||.|||++|.++|.+|+  . .+|..||.+|+ +||..||..+|..++                    +|       
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l--------------------~p-------   50 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENG--P-QNWPRITSFLP-NRSPKQCRERWFNHL--------------------DP-------   50 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC--S-CCGGGGTTSCT-TSCHHHHHHHHHHHT--------------------ST-------
T ss_pred             CCCCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHC-CCCHHHHHHHHhhcc--------------------Cc-------
Confidence            57999999999999999994  3 48999999998 799999999997653                    23       


Q ss_pred             ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185          137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~  203 (214)
                                   .+..++||+|||.+|+.++..|+    .+|..||..|||||+.||++||..++.
T Consensus        51 -------------~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~  100 (131)
T 3zqc_A           51 -------------AVVKHAWTPEEDETIFRNYLKLG----SKWSVIAKLIPGRTDNAIKNRWNSSIS  100 (131)
T ss_dssp             -------------TCCCSCCCHHHHHHHHHHHHHSC----SCHHHHTTTSTTCCHHHHHHHHHHTTG
T ss_pred             -------------cccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                         47789999999999999999995    689999999999999999999987543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.90  E-value=8.9e-24  Score=171.72  Aligned_cols=115  Identities=21%  Similarity=0.288  Sum_probs=95.6

Q ss_pred             CCCchhhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCch
Q 047185           40 NESKGEKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSD  115 (214)
Q Consensus        40 ~~~~~~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~  115 (214)
                      +.+++...+.-|.++    ...++||.|||.+|.+++++|+.   .+|..||.+|+ +||..||..+|..++        
T Consensus        37 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l--------  104 (159)
T 1h89_C           37 PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL--------  104 (159)
T ss_dssp             ------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTST-TCCHHHHHHHHHHTT--------
T ss_pred             CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcC-CCCHHHHHHHHHHHh--------
Confidence            346666666667776    46899999999999999999953   58999999998 799999999997653        


Q ss_pred             hHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHH
Q 047185          116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACM  195 (214)
Q Consensus       116 ~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~  195 (214)
                                  +|                    .+..++||++||.+|+.++..|+    .+|..||.+|||||+.+|+
T Consensus       105 ------------~p--------------------~~~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~gRt~~~~k  148 (159)
T 1h89_C          105 ------------NP--------------------EVKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIK  148 (159)
T ss_dssp             ------------CT--------------------TSCCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTSTTCCHHHHH
T ss_pred             ------------Cc--------------------cccccCCChHHHHHHHHHHHHHC----CCHHHHHHHCCCCCHHHHH
Confidence                        23                    46789999999999999999995    6999999999999999999


Q ss_pred             HHHHHHH
Q 047185          196 KRFSDLK  202 (214)
Q Consensus       196 ~Ry~~L~  202 (214)
                      +||+.|.
T Consensus       149 nr~~~~~  155 (159)
T 1h89_C          149 NHWNSTM  155 (159)
T ss_dssp             HHHHTTT
T ss_pred             HHHHHHH
Confidence            9998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.87  E-value=4e-23  Score=167.85  Aligned_cols=99  Identities=23%  Similarity=0.417  Sum_probs=53.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcc
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQEN  135 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~  135 (214)
                      ..+.||.|||++|.++|.+|+  + .+|..||.+|+ +||+.||..+|..++                    +|      
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g--~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l--------------------~p------   54 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNG--T-DDWKVIANYLP-NRTDVQCQHRWQKVL--------------------NP------   54 (159)
T ss_dssp             ------------------------------------------CHHHHHHTTT--------------------CT------
T ss_pred             CCCCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHcC-CCCHHHHHHHHHHcc--------------------CC------
Confidence            568899999999999999995  3 58999999998 799999999996542                    23      


Q ss_pred             cccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          136 CEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                                    .+..++||++||.+|..++..|+.   .+|..||..|||||+.||++||..+
T Consensus        55 --------------~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~  103 (159)
T 1h89_C           55 --------------ELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH  103 (159)
T ss_dssp             --------------TCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred             --------------CcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcCCCCHHHHHHHHHHH
Confidence                          467899999999999999999963   5899999999999999999999864

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.72  E-value=9.3e-18  Score=126.68  Aligned_cols=62  Identities=35%  Similarity=0.633  Sum_probs=57.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhccc
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGD  212 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~~  212 (214)
                      ...++||.+||++|+.||..|+.+++++|.+||.+|||||++||++||+.|+++|..++++.
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~   67 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK   67 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            45779999999999999999999889999999999999999999999999999999998874

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.72  E-value=4e-18  Score=123.37  Aligned_cols=58  Identities=29%  Similarity=0.523  Sum_probs=54.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                      ....++||.+||++|+.||..||.+.+++|.+||.+|||||++||++||+.|+++|.+
T Consensus        15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~~   72 (73)
T 2cqr_A           15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPSS   72 (73)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcccC
Confidence            4678899999999999999999987789999999999999999999999999988754

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.64  E-value=1e-16  Score=116.01  Aligned_cols=61  Identities=33%  Similarity=0.494  Sum_probs=55.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG  211 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~  211 (214)
                      .....||.+|+++|++||..||.++++||++||.+|||||..||+.||..|...+.+.|-+
T Consensus         6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~~   66 (73)
T 1wgx_A            6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKHV   66 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccccccc
Confidence            3467899999999999999999999999999999999999999999999998887776654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.62  E-value=3.7e-16  Score=122.65  Aligned_cols=72  Identities=17%  Similarity=0.362  Sum_probs=45.6

Q ss_pred             HHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHH
Q 047185           86 IAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALL  165 (214)
Q Consensus        86 IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~  165 (214)
                      ||+.|+ +||+.||..+|..++                    +|                    .+.+++||+|||.+|.
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l--------------------~p--------------------~~~k~~Wt~eED~~L~   39 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVL--------------------NP--------------------ELNKGPWTKEEDQRVI   39 (128)
T ss_dssp             ------------------------------------------CT--------------------TCCCSCCCHHHHHHHH
T ss_pred             CccccC-CCCHHHHHHHHHHhh--------------------CC--------------------CCCCCCCCHHHHHHHH
Confidence            899998 799999999996542                    23                    4788999999999999


Q ss_pred             HHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          166 NALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       166 ~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      .++..|+.   .+|..||..|||||..||++||..+
T Consensus        40 ~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~   72 (128)
T 1h8a_C           40 EHVQKYGP---KRWSDIAKHLKGRIGKQCRERWHNH   72 (128)
T ss_dssp             HHHHHTCS---CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred             HHHHHHCC---CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence            99999963   5899999999999999999999864

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.60  E-value=1.1e-15  Score=110.25  Aligned_cols=60  Identities=30%  Similarity=0.550  Sum_probs=54.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG  211 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~  211 (214)
                      +...+.||.+||++|+.||..||.++++||++||.+| |||.+||++||+.|.+++ .++++
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G   64 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPG   64 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCC
Confidence            4567899999999999999999999999999999997 999999999999999996 45554

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.57  E-value=4.3e-15  Score=107.14  Aligned_cols=53  Identities=43%  Similarity=0.728  Sum_probs=49.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEK  109 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~  109 (214)
                      ...+.||.||+.+|.+|+++||.||++||++||++||  ||++||+.+|+.|.+.
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence            4577999999999999999999999999999999995  9999999999998654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=7e-15  Score=105.70  Aligned_cols=57  Identities=21%  Similarity=0.416  Sum_probs=49.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCC--CCcHHHHHhhCCCCCHHHHHHHH-HHHHHHHh
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDV--PLRWEKIAAAVPGRSKAACMKRF-SDLKRDFR  206 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~--~~rW~kIA~~vPGRT~~qc~~Ry-~~L~~~v~  206 (214)
                      .+.+++||+|||.+|+.+|..|+.+.  +.+|.+||.+|||||+.||++|| ++|...++
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            57889999999999999999998543  27999999999999999999999 55655443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.52  E-value=1.9e-15  Score=109.08  Aligned_cols=49  Identities=39%  Similarity=0.641  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS  199 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~  199 (214)
                      .....||.+|+++|++||..||+++++||.+||.+|||||..||+.+|.
T Consensus        18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999995

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=100.63  Aligned_cols=58  Identities=28%  Similarity=0.558  Sum_probs=52.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhccc
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGD  212 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~~  212 (214)
                      .+.+++||+|||.+|+.++..|+    .+|..||. +||||+.||++||..++.....+++..
T Consensus         6 ~~~k~~WT~eED~~L~~~~~~~g----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~   63 (66)
T 2din_A            6 SGKKTEWSREEEEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP   63 (66)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHCT----TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcC----CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence            58899999999999999999996    59999999 999999999999999888777766543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=103.07  Aligned_cols=48  Identities=25%  Similarity=0.410  Sum_probs=43.4

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      .+.++||.|||.+|.++|.+|+  + .+|..||.+|+ +||..||..||..+
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYG--K-NQWSRIASLLH-RKSAKQCKARWYEW   54 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTC--S-SCHHHHHHHST-TCCHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHhc-CCCHHHHHHHHHHH
Confidence            5678999999999999999994  3 58999999999 79999999999765

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.49  E-value=3.8e-14  Score=102.52  Aligned_cols=52  Identities=29%  Similarity=0.456  Sum_probs=48.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ....||.+|+.+|..|++.||.++++||+.||++|| +||++||+.+|+++..
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999999 6999999999998854

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.49  E-value=5e-14  Score=94.44  Aligned_cols=48  Identities=25%  Similarity=0.488  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      .+++||+|||.+|..++..|+.   .+|..||..|||||+.||++||..++
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVL   49 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            5789999999999999999963   49999999999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.48  E-value=6e-14  Score=97.11  Aligned_cols=49  Identities=27%  Similarity=0.528  Sum_probs=45.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      .+..++||++||.+|+.++..|+.   .+|..||..|||||+.||++||..+
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~   53 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMKY   53 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            578899999999999999999963   5999999999999999999999864

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.47  E-value=9.5e-14  Score=99.28  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=47.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185          149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD  204 (214)
Q Consensus       149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~  204 (214)
                      +.+..++||+|||.+|+.++..|+    .+|..||.+|||||+.||++||..+...
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G----~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFG----RRWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTC----SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            368899999999999999999996    5999999999999999999999875544

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.46  E-value=7.2e-14  Score=93.73  Aligned_cols=47  Identities=28%  Similarity=0.565  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      .+++||+|||.+|..++..|+.   .+|..||..|||||..||++||..+
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCCCCHHHHHHHHHHH
Confidence            5789999999999999999963   4799999999999999999999864

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=1.2e-13  Score=95.30  Aligned_cols=51  Identities=24%  Similarity=0.472  Sum_probs=46.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      +.+.+++||+|||.+|..++..|+.   .+|..||..|||||+.||++||..++
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPNRTDQQCQYRWLRVL   54 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccCCCHHHHHHHHHHHc
Confidence            3578999999999999999999963   59999999999999999999998653

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.44  E-value=8e-14  Score=100.75  Aligned_cols=53  Identities=23%  Similarity=0.440  Sum_probs=49.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ...++||.||+.+|..|+++||.++++||.+||.+|| +||..||+.||+.|..
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4678999999999999999999889999999999999 7999999999998754

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.42  E-value=2.9e-13  Score=93.17  Aligned_cols=48  Identities=27%  Similarity=0.506  Sum_probs=44.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFSDL  201 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~~L  201 (214)
                      +..++||++||.+|+.++..|+.   .+|..||..|| |||+.||++||..+
T Consensus         7 ~~~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            7 GFDENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            55789999999999999999963   69999999999 99999999999764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.42  E-value=3.2e-13  Score=91.06  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~  202 (214)
                      .++||+|||.+|..++..|+.   .+|..||..||  |||+.||++||..+.
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            579999999999999999963   59999999999  999999999998875

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.38  E-value=6.4e-13  Score=100.13  Aligned_cols=52  Identities=21%  Similarity=0.403  Sum_probs=48.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ..++||.||+.+|..|+++||.|+++||.+||.+|+ +||.+||..+|+.+.+
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~   58 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVE   58 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999 6999999999998754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.38  E-value=7.7e-13  Score=93.06  Aligned_cols=50  Identities=18%  Similarity=0.377  Sum_probs=44.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLKR  203 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~~  203 (214)
                      ..+++||+|||.+|..++..|+.   .+|..||..+|  |||+.||++||..|..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            57889999999999999999963   58999999977  9999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.38  E-value=1.4e-13  Score=100.74  Aligned_cols=56  Identities=27%  Similarity=0.529  Sum_probs=48.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH-HHHHhchh
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL-KRDFRSSK  209 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L-~~~v~~~k  209 (214)
                      .....+||++||.+|+.||..|+    .+|.+||.+|||||+.||++||..| ++++...+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~   71 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEN   71 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhccccccccc
Confidence            35678999999999999999996    6999999999999999999999877 55554443

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=9.2e-13  Score=93.47  Aligned_cols=50  Identities=32%  Similarity=0.625  Sum_probs=45.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      +.+..++||++||.+|..++..|+.   .+|..||..|||||..||++||..+
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWYEW   54 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCHHHHHHHHHHH
Confidence            3578899999999999999999963   6999999999999999999999864

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.37  E-value=2.8e-12  Score=111.10  Aligned_cols=134  Identities=18%  Similarity=0.279  Sum_probs=90.8

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCC--CCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccC---CchhHHHHhhhhcccch
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVG--KPKRWEVIAEAFNGRHRVESVIKKAKELGEKKID---DSDSYNQFLKNRKAIDM  129 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~G--t~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~---~~~~~~~~l~~~~~l~~  129 (214)
                      ++.++||.|||++|..++.+||-.  +..-|..||.+|+ +||.-||..+|+.++.....   +.+..+..        .
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~L--------i   76 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKL--------V   76 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCB--------C
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhh--------h
Confidence            467899999999999999999641  1112999999999 79999999999987654321   00000000        0


Q ss_pred             hhhhccccccccccccc--ccCCCCCCCCCHHHHHHHHHHHHh-C-----C------C----------------------
Q 047185          130 RVVQENCEDSKKESQEN--VVVGGGGGVWNAGEDIALLNALKA-F-----P------K----------------------  173 (214)
Q Consensus       130 r~~~~~~~~~~s~~~~~--~~~~~~~~~WT~eED~~L~~al~~-~-----p------~----------------------  173 (214)
                      +...        +.+..  .++..-+..||++||-.|...+.. |     .      .                      
T Consensus        77 ~d~~--------Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  148 (246)
T 1ign_A           77 RDDD--------GNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPN  148 (246)
T ss_dssp             BCTT--------SCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------
T ss_pred             hccC--------CCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCcc
Confidence            0000        11111  223334678999999999999877 2     0      0                      


Q ss_pred             -----------------CCC---CcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185          174 -----------------DVP---LRWEKIAAAVPGRSKAACMKRFSDLKRDF  205 (214)
Q Consensus       174 -----------------~~~---~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v  205 (214)
                                       .++   ..|..||..+|++|....++||..++...
T Consensus       149 ~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          149 HVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             ------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                             011   28999999999999999999998765543

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.35  E-value=1.9e-12  Score=91.66  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=46.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLKR  203 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~~  203 (214)
                      ....++||+|||.+|..++..|+.   .+|..||..||  |||..||++||..++.
T Consensus         7 ~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            7 ARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999963   59999999999  9999999999987653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.34  E-value=1.3e-13  Score=99.56  Aligned_cols=48  Identities=17%  Similarity=0.312  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHH
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAK  104 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k  104 (214)
                      .+..||.+|+.+|.+|+++||.||++||++||++|| +||++||+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            467899999999999999999999999999999999 699999999884

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.34  E-value=7.9e-13  Score=95.52  Aligned_cols=50  Identities=24%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD  204 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~  204 (214)
                      .+.+++||+|||.+|..++..|+    .+|..||..| |||+.||++||..|.+.
T Consensus        20 ~i~k~~wT~EED~~L~~l~~~~G----~kW~~IA~~l-gRt~~q~knRw~~L~~~   69 (73)
T 2llk_A           20 RNHVGKYTPEEIEKLKELRIKHG----NDWATIGAAL-GRSASSVKDRCRLMKDT   69 (73)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHHHS----SCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence            68899999999999999999995    5799999999 99999999999987543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=3e-12  Score=91.85  Aligned_cols=52  Identities=19%  Similarity=0.461  Sum_probs=45.5

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCC--CcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGK--PKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt--~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ...++||.|||.+|.++|.+|+.++  +.+|..||.+|+ +||..||..||+.++
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l   59 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYF   59 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3578999999999999999997655  379999999999 799999999996553

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.26  E-value=1.2e-11  Score=85.02  Aligned_cols=49  Identities=12%  Similarity=0.170  Sum_probs=43.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ...++||.|||.+|.++|.+|+  . .+|..||.+|+++||..||..||..+
T Consensus         7 ~~~~~WT~eED~~L~~~v~~~G--~-~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            7 GFDENWGADEELLLIDACETLG--L-GNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTT--T-TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            3467899999999999999994  3 58999999998679999999999765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.91  E-value=5e-13  Score=99.54  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185          149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~  203 (214)
                      +.+..++||++||.+|+.++..|+    .+|..||.+|||||+.||++||..+..
T Consensus        12 p~~~~~~WT~eEd~~l~~~~~~~G----~~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           12 ENLYFQGWTEEEMGTAKKGLLEHG----RNWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            357899999999999999999995    589999999999999999999976543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.24  E-value=1.4e-11  Score=85.10  Aligned_cols=49  Identities=12%  Similarity=0.201  Sum_probs=43.8

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ...++||.|||.+|.++|.+|+  . ++|..||.+|+ +||..||..||..++
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCG--F-GNWQDVANQMC-TKTKEECEKHYMKYF   54 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTC--T-TCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--c-CcHHHHHHHhC-CCCHHHHHHHHHHHc
Confidence            4678999999999999999994  3 58999999999 699999999998764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.24  E-value=1.1e-11  Score=82.88  Aligned_cols=48  Identities=23%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      +.++||.|||.+|..+|.+|+  . .+|..||.+|+ +||..||..+|..++
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNG--T-DDWKVIANYLP-NRTDVQCQHRWQKVL   49 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHC--S-SCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence            578999999999999999994  3 48999999998 799999999998764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.22  E-value=1.3e-11  Score=82.54  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      +.++||.|||.+|.++|.+|+  . .+|..||.+|+ +||..||..+|..++
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYG--P-KRWSVIAKHLK-GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHC--T-TCHHHHHTTST-TCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHC--c-ChHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence            578999999999999999994  3 47999999998 799999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.21  E-value=2.6e-11  Score=83.40  Aligned_cols=50  Identities=14%  Similarity=0.269  Sum_probs=44.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      .+.++||.|||.+|.++|.+|+  + ++|..||.+|+ +||..||..+|..++.
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFG--Q-QDWKFLASHFP-NRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTC--T-TCHHHHHHHCS-SSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHcc-CCCHHHHHHHHHHHcC
Confidence            4678999999999999999994  3 58999999998 7999999999987653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.19  E-value=2.1e-11  Score=92.18  Aligned_cols=48  Identities=25%  Similarity=0.508  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      +.+++||++||.+|..++..|+.   .+|..||..|||||..||++||..+
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH   49 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcCCCHHHHHHHHHhc
Confidence            56889999999999999999964   5899999999999999999999864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.18  E-value=3.7e-11  Score=84.43  Aligned_cols=55  Identities=13%  Similarity=0.312  Sum_probs=43.9

Q ss_pred             hhhccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-CCCCHHHHHHHHHHhhh
Q 047185           51 QRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-GRHRVESVIKKAKELGE  108 (214)
Q Consensus        51 ~~~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-~~RT~~qc~~k~k~l~~  108 (214)
                      ..++...+.||.|||++|.++|++|+  . .+|..||.+++ .+||..||..||+.+..
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~V~~~G--~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            5 TTNITKKQKWTVEESEWVKAGVQKYG--E-GNWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -----CCCCCCHHHHHHHHHHHHHHC--T-TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHccC--C-CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            44556789999999999999999994  3 47999999865 36999999999988754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.18  E-value=2.3e-11  Score=88.89  Aligned_cols=47  Identities=17%  Similarity=0.380  Sum_probs=42.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ...++||.||+.+|.++|++|+    ++|..||.+|+ +||..||+.||..+
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYK----DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            4578999999999999999995    68999999999 69999999999765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=7.6e-11  Score=81.82  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      ....+||++|+++|+.++..||    .+|.+||.+|||||..||+++|..
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~g----k~w~~Ia~~l~~rt~~~~v~~Yy~   55 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHP----KNFGLIASYLERKSVPDCVLYYYL   55 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHST----TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHH
Confidence            4568999999999999999996    599999999999999999999954

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.14  E-value=5.2e-11  Score=90.65  Aligned_cols=46  Identities=17%  Similarity=0.383  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      ++.||+|||.+|..++..|+.   .+|..||..|||||..||++||...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~   46 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGA---KDWIRISQLMITRNPRQCRERWNNY   46 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCCCCHHHHHHHHHHH
Confidence            468999999999999999973   5899999999999999999999764

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.12  E-value=6.9e-11  Score=92.52  Aligned_cols=49  Identities=24%  Similarity=0.416  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      ...+++||+|||.+|..++..|+    .+|..||..|||||..||++||...+
T Consensus         8 ~~kk~~WT~eED~~L~~~v~~~G----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            8 AAKKQKFTPEEDEMLKRAVAQHG----SDWKMIAATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             BCSSCCCCHHHHHHHHHHHHHHT----TCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence            47889999999999999999995    49999999999999999999998643

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.12  E-value=1e-10  Score=78.61  Aligned_cols=49  Identities=12%  Similarity=0.203  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC-CCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG-RHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~-~RT~~qc~~k~k~l~~  108 (214)
                      .++||.|||.+|..+|.+|+  . ++|..||..|+. +||..||..+|..+..
T Consensus         2 r~~WT~eEd~~L~~~v~~~G--~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYG--E-GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--T-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            57999999999999999994  3 489999999973 4999999999987753

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.10  E-value=1.5e-10  Score=82.47  Aligned_cols=49  Identities=20%  Similarity=0.364  Sum_probs=43.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      .+.++||.||+.+|.+++.+|+  .  +|..||.+|+ +||..||..+|+.++.
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G--~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~   55 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFG--R--RWTKISKLIG-SRTVLQVKSYARQYFK   55 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTC--S--CHHHHHHHHS-SSCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHC--c--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4678999999999999999994  4  8999999999 7999999999987643

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.07  E-value=8.3e-11  Score=92.54  Aligned_cols=47  Identities=23%  Similarity=0.422  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      +++||+|||.+|..++..|+.   .+|..||..|||||..||++||...+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence            579999999999999999963   58999999999999999999996643

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.05  E-value=2.5e-10  Score=80.70  Aligned_cols=52  Identities=13%  Similarity=0.240  Sum_probs=45.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC-CCCHHHHHHHHHHhhhc
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG-RHRVESVIKKAKELGEK  109 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~-~RT~~qc~~k~k~l~~~  109 (214)
                      ...++||.||+.+|..+|.+|  |+ ++|..||.+|+. +||..||..+|..++..
T Consensus         8 ~~r~~WT~eED~~L~~~v~~~--G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            8 RKRQAWLWEEDKNLRSGVRKY--GE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHH--CS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHH--CC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            367899999999999999999  43 489999999983 59999999999887553

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.7e-10  Score=79.08  Aligned_cols=48  Identities=21%  Similarity=0.347  Sum_probs=41.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      .+.++||.|||.+|.+++..|+  .  +|..||. |. +||..||..||..++.
T Consensus         7 ~~k~~WT~eED~~L~~~~~~~g--~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~   54 (66)
T 2din_A            7 GKKTEWSREEEEKLLHLAKLMP--T--QWRTIAP-II-GRTAAQCLEHYEFLLD   54 (66)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHCT--T--CHHHHHH-HH-SSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC--C--CHHHHhc-cc-CcCHHHHHHHHHHHhC
Confidence            4678999999999999999995  3  8999999 55 4999999999987754

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.03  E-value=4e-10  Score=83.12  Aligned_cols=47  Identities=17%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~  203 (214)
                      .+||+|||.+|..++.+|+.   .+|..|+..    +||||..+|++||..|..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            48999999999999999974   499999985    999999999999998765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.97  E-value=6.2e-10  Score=87.51  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHc----CCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAF----NGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMR  130 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r  130 (214)
                      ...++||.||+..|+.+|++|+  . ++|..|+..+    + +||..||..+|+.+.....               +.| 
T Consensus        15 r~r~~WT~EEd~~L~~gV~k~G--~-G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~---------------~~p-   74 (121)
T 2juh_A           15 RIRRPFSVAEVEALVEAVEHLG--T-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTAS---------------IAP-   74 (121)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHG--G-GCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHH---------------TCS-
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--C-CCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhc---------------cCC-
Confidence            4678999999999999999994  3 4899999986    5 7999999999988754210               112 


Q ss_pred             hhhcccccccccccccccCCCCCC-CCCHHHHHHHHHHHHhCCCCCCCcHHH
Q 047185          131 VVQENCEDSKKESQENVVVGGGGG-VWNAGEDIALLNALKAFPKDVPLRWEK  181 (214)
Q Consensus       131 ~~~~~~~~~~s~~~~~~~~~~~~~-~WT~eED~~L~~al~~~p~~~~~rW~k  181 (214)
                                         .+..+ +|+++|+..|..+...+    +++|.+
T Consensus        75 -------------------~~krg~~~p~e~~~rv~~~h~~~----gn~~~~  103 (121)
T 2juh_A           75 -------------------QQRRGEPVPQDLLDRVLAAHAYW----SQQQGK  103 (121)
T ss_dssp             -------------------TTCCCSCCCHHHHHHHHHHHHHH----HHHHCC
T ss_pred             -------------------cccCCCCCCHHHHHHHHHHHHHH----ccchhc
Confidence                               23445 99999999999999888    467765

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.96  E-value=1.2e-09  Score=85.94  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHc----CCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAF----NGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMR  130 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r  130 (214)
                      ...++||.||++.|+.+|++|+  . ++|..|+..+    + +||..||..||+.+....               .++| 
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G--~-g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~---------------~~~p-   88 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLG--T-GRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTA---------------SIAP-   88 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHS--S-SCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHH---------------HSCT-
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--C-CChHHHHHHhccccC-CCCHHHHHHHHHHHHhhc---------------cCCc-
Confidence            4688999999999999999994  3 4899999975    5 799999999998875321               1223 


Q ss_pred             hhhcccccccccccccccCCCCCCCCCHHH-HHHHHHHHHhCC
Q 047185          131 VVQENCEDSKKESQENVVVGGGGGVWNAGE-DIALLNALKAFP  172 (214)
Q Consensus       131 ~~~~~~~~~~s~~~~~~~~~~~~~~WT~eE-D~~L~~al~~~p  172 (214)
                                         .+..+.|+++| +..+..|...|+
T Consensus        89 -------------------~~kr~~~~p~e~~~~v~~~h~~~g  112 (122)
T 2roh_A           89 -------------------QQRRGAPVPQELLDRVLAAQAYWS  112 (122)
T ss_dssp             -------------------TTCCCSSCCHHHHHHHHHHHHHHH
T ss_pred             -------------------cccCCCCCCHHHHHHHHHHHHHHh
Confidence                               35678999999 677888877764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.90  E-value=2.5e-09  Score=82.16  Aligned_cols=51  Identities=16%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV----PGRSKAACMKRFSDLKR  203 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v----PGRT~~qc~~Ry~~L~~  203 (214)
                      ....++||+|||.+|..++.+|+.   .+|..|+..+    ||||..+|++||..|..
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            568899999999999999999974   4999999865    89999999999998874

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.87  E-value=2.6e-09  Score=77.04  Aligned_cols=48  Identities=23%  Similarity=0.426  Sum_probs=43.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ++.++||.|||.+|.+++++|+  .  +|..||.+|  +||..||..+|+.|..
T Consensus        21 i~k~~wT~EED~~L~~l~~~~G--~--kW~~IA~~l--gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           21 NHVGKYTPEEIEKLKELRIKHG--N--DWATIGAAL--GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHS--S--CHHHHHHHH--TSCHHHHHHHHHHCSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--C--CHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            6789999999999999999994  3  599999999  5999999999987753

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.86  E-value=1e-08  Score=91.70  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=99.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccch---hh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDM---RV  131 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~---r~  131 (214)
                      ..=+.||..|...+++|+.+|  |. ++|+.||..|+ ++|.++|...++-+-.. ......|++++..-...+-   +.
T Consensus       108 eGF~~W~rrdf~~Fi~a~~ky--Gr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~r-y~ei~d~ek~~~~IE~gE~ki~r~  182 (304)
T 1ofc_X          108 QGFTAWTKRDFNQFIKANEKY--GR-DDIDNIAKDVE-GKTPEEVIEYNAVFWER-CTELQDIERIMGQIERGEGKIQRR  182 (304)
T ss_dssp             SSCTTCCHHHHHHHHHHHHHH--CT-TCHHHHTTSST-TCCHHHHHHHHHHHHHH-GGGCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCHHHHHHHHHHHHHh--CH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHh-HHHhccHHHHHHHHHHHHHHHHHH
Confidence            344579999999999999999  44 68999999998 79999998777655332 1223455555543211000   00


Q ss_pred             hhc--------cccccccccccccc-CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH------------hhCCCCC
Q 047185          132 VQE--------NCEDSKKESQENVV-VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA------------AAVPGRS  190 (214)
Q Consensus       132 ~~~--------~~~~~~s~~~~~~~-~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA------------~~vPGRT  190 (214)
                      ...        ..-..|-. .-+.. .......||.+||..|+.+|..|+.+.+..|++|.            -++-.||
T Consensus       183 ~~~~~~l~~Ki~~~~~P~~-~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRT  261 (304)
T 1ofc_X          183 LSIKKALDQKMSRYRAPFH-QLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRT  261 (304)
T ss_dssp             HHHHHHHHHHHHTCSSHHH-HCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCcHH-HhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCC
Confidence            000        00000000 00000 12356799999999999999999988889999997            3667899


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 047185          191 KAACMKRFSDLKRDFRS  207 (214)
Q Consensus       191 ~~qc~~Ry~~L~~~v~~  207 (214)
                      +.++..|...|+..|.+
T Consensus       262 p~el~rRc~tLi~~iek  278 (304)
T 1ofc_X          262 ALELQRRCNTLITLIER  278 (304)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998876643

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.83  E-value=2.8e-09  Score=83.77  Aligned_cols=51  Identities=16%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~  203 (214)
                      ....++||.|||.+|..++..|+.   .+|..|+..    ++|||..+|++||..|+.
T Consensus        14 rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk   68 (121)
T 2juh_A           14 RRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   68 (121)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            578899999999999999999963   499999987    499999999999998775

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.83  E-value=6.8e-09  Score=72.67  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH---hhCCCCCHHHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA---AAVPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA---~~vPGRT~~qc~~Ry~~L~~  203 (214)
                      ....+||+|||..|++++.+|+    ..|..|+   .+++|||..++++||..|..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G----~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMG----NHWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHC----SCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh----HhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            5788999999999999999995    5999999   68899999999999999864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.81  E-value=6.3e-09  Score=81.86  Aligned_cols=52  Identities=15%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185          149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~  203 (214)
                      .....++||.|||.+|..++.+|+.   .+|..|+..    ++|||..+|++||..|..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk   82 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            3567899999999999999999974   499999986    499999999999998874

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=8.8e-09  Score=71.32  Aligned_cols=46  Identities=22%  Similarity=0.404  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ...+||+||+.+|..++.+||    .+|..||.+|+ +||+.||+.+|-..
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~g----k~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHP----KNFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHST----TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            457999999999999999995    48999999999 79999999998543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.80  E-value=3.1e-09  Score=92.04  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=43.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCC-CCCc-HHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKD-VPLR-WEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~-~~~r-W~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      ...+++||+|||..|..++.+||.. .++. |..||.+|||||+.+|++||..++
T Consensus         5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L   59 (246)
T 1ign_A            5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL   59 (246)
T ss_dssp             ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4678899999999999999999752 1233 999999999999999999998743

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.23  E-value=9.5e-10  Score=81.70  Aligned_cols=49  Identities=20%  Similarity=0.367  Sum_probs=43.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      .+.++||.||+.+|..++.+|  |.  +|..||.+|+ +||..||..+|..++.
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~--G~--~W~~IA~~l~-gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEH--GR--NWSAIARMVG-SKTVSQCKNFYFNYKK   62 (89)
Confidence            467899999999999999999  44  7999999999 7999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.66  E-value=1.6e-08  Score=95.21  Aligned_cols=44  Identities=14%  Similarity=0.369  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      ...||.+|..+|+++|.+|+    ..|..||..|++||..||+.+|..
T Consensus       380 ~~~WT~eE~~~f~~al~~yG----kdw~~IA~~VgTKT~~Qvk~fy~~  423 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFFVN  423 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHT----TCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC----cCHHHHHHHhCCCCHHHHHHHHHH
Confidence            57999999999999999996    489999999999999999999943

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.60  E-value=6.2e-08  Score=71.35  Aligned_cols=47  Identities=15%  Similarity=0.216  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHH----cCCCCCHHHHHHHHHHhhh
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEA----FNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~----lg~~RT~~qc~~k~k~l~~  108 (214)
                      ++||.||+..|+.+|++|+.   ++|..|+..    |+ +||..||..+|+.+..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccC-CCCHHHHHHHHHHHHH
Confidence            58999999999999999953   489999996    76 7999999999988754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.57  E-value=4.8e-08  Score=84.02  Aligned_cols=46  Identities=13%  Similarity=0.330  Sum_probs=42.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      ....+||.+|+.+|++|+..|+    .+|..||..|||||..||+++|..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG----KDW~~IAk~VgTKT~~QcKnfY~~  176 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFFVN  176 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS----SCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHH
Confidence            4577999999999999999996    589999999999999999999964

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.8e-07  Score=65.21  Aligned_cols=47  Identities=15%  Similarity=0.353  Sum_probs=42.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh-hCCCCCHHHHHHHHH
Q 047185          149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA-AVPGRSKAACMKRFS  199 (214)
Q Consensus       149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~-~vPGRT~~qc~~Ry~  199 (214)
                      +......||++|-++|+++|..|++    .|.+|+. +||+||..||...|-
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCcHHHHHHHHh
Confidence            3567789999999999999999975    7999998 799999999998884

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.42  E-value=2.7e-07  Score=70.73  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=44.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC---CCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN---GRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg---~~RT~~qc~~k~k~l~~  108 (214)
                      ...++||.||+..|+.+|++|+  . ++|..|+..+.   .+||..||..+|+.+..
T Consensus        11 r~r~~WT~EEd~~L~~gV~k~G--~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           11 RIRRPFSVAEVEALVQAVEKLG--T-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHC--S-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC--C-CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            5788999999999999999995  3 47999999652   37999999999998764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.35  E-value=8.3e-07  Score=63.11  Aligned_cols=45  Identities=22%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh-hCCCCCHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA-AVPGRSKAACMKRFS  199 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~-~vPGRT~~qc~~Ry~  199 (214)
                      .....||++|-++|+.+|..|++    .|..|+. +||+||..||...|-
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK----DFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCCHHHHHHHHH
Confidence            45679999999999999999975    7999999 799999999999885

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.32  E-value=1.6e-06  Score=65.17  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhchhc
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV-----PGRSKAACMKRFSDLKRDFRSSKA  210 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v-----PGRT~~qc~~Ry~~L~~~v~~~k~  210 (214)
                      ...+||.||+..|..++..|.    .||..|+...     ++||.+++++||..+...+...++
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            448999999999999999994    7999999998     689999999999998877665543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.31  E-value=1e-06  Score=66.09  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=41.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      ....||++|..+|+.++..||+    +|.+||..||+||..||...|-.
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCCCCHHHHHHHHhc
Confidence            4678999999999999999975    89999999999999999999843

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=98.28  E-value=4.5e-06  Score=76.38  Aligned_cols=145  Identities=17%  Similarity=0.201  Sum_probs=97.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhc----------
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRK----------  125 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~----------  125 (214)
                      .=+.||.-|-..|++|+.+|  |. +.-+.||..|++++|.++|...++-+-.. ......|++++.+-.          
T Consensus       122 GF~~WnrrDF~~FI~a~~ky--GR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R-y~Ei~d~erii~~IEkgE~ki~r~~  197 (374)
T 2y9y_A          122 GFTNWNKLEFRKFITVSGKY--GR-NSIQAIARELAPGKTLEEVRAYAKAFWSN-IERIEDYEKYLKIIENEEEKIKRVK  197 (374)
T ss_dssp             CCCCSCHHHHHHHHHHHHHH--CT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHT-CSSCSCCTTTHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHh--CH-hHHHHHHHHHccCCCHHHHHHHHHHHHHh-hhhhccHHHHHHHHHHHHHHHHHHH
Confidence            44579999999999999999  44 68999999997579999999766654322 122233333332210          


Q ss_pred             ----ccchhhhhccccc---ccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------C
Q 047185          126 ----AIDMRVVQENCED---SKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------V  186 (214)
Q Consensus       126 ----~l~~r~~~~~~~~---~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------v  186 (214)
                          .+...+.....+-   .-.++.    .......||.+||..|+.+|..|+-+.+..|++|-..            +
T Consensus       198 ~~~~~L~~Ki~~y~~P~~~L~i~y~~----~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~  273 (374)
T 2y9y_A          198 MQQEALRRKLSEYKNPFFDLKLKHPP----SSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYF  273 (374)
T ss_dssp             HHHHHHHHHHTTCSSHHHHCCCSSCC----CCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHH
T ss_pred             HHHHHHHHHHHHccCCHHHceeccCC----CCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHH
Confidence                0000000000000   000111    1125678999999999999999998777899999543            5


Q ss_pred             CCCCHHHHHHHHHHHHHHHhch
Q 047185          187 PGRSKAACMKRFSDLKRDFRSS  208 (214)
Q Consensus       187 PGRT~~qc~~Ry~~L~~~v~~~  208 (214)
                      -.||..++..|...|+..|.+-
T Consensus       274 kSRT~~EL~rRc~tLi~~IeKE  295 (374)
T 2y9y_A          274 RSRTPVELARRGNTLLQCLEKE  295 (374)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999877543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.26  E-value=1e-06  Score=61.53  Aligned_cols=49  Identities=18%  Similarity=0.284  Sum_probs=42.5

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHH---HcCCCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE---AFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~---~lg~~RT~~qc~~k~k~l~~  108 (214)
                      .+..+||+||+..|.++|.+|  |.  .|..|+.   ++. +||.-++-.+|+.|..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~--G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTM--GN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHH--CS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHH--hH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            467899999999999999999  43  7999995   555 7999999999988754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=67.30  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=49.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchh
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK  209 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k  209 (214)
                      ..--||.|||..|+.++++-+.+ +..|..||..+ +||.+|+.+||..|+..|...|
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~kSk   68 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMKLFEKSK   68 (70)
Confidence            45689999999999999886543 57999999999 9999999999999999998765

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.24  E-value=2.5e-06  Score=63.83  Aligned_cols=60  Identities=15%  Similarity=0.265  Sum_probs=52.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG  211 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~  211 (214)
                      ...--||.++|+.|+.++++-+. .+..|..||..+.+||.+|+.+||..|...|....+.
T Consensus        31 e~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~~~   90 (95)
T 1ug2_A           31 EKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACES   90 (95)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred             CEEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcc
Confidence            34568999999999999999754 2689999999999999999999999999999877654

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.12  E-value=4.3e-06  Score=62.65  Aligned_cols=45  Identities=20%  Similarity=0.446  Sum_probs=40.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHH
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAK  104 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k  104 (214)
                      .....||+||..++.+++..||    .+|-+||++|+ +||+.||+..|=
T Consensus        41 ~~~~~WT~eE~~~F~~~~~~~g----K~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           41 QVMNMWSEQEKETFREKFMQHP----KNFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHST----TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcC-CCCHHHHHHHHh
Confidence            5678899999999999999996    47999999998 899999999883

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=5.4e-06  Score=57.64  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=38.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHH-HcCCCCCHHHHHHHHH
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE-AFNGRHRVESVIKKAK  104 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~-~lg~~RT~~qc~~k~k  104 (214)
                      ....||+||..++.+++.+||    .+|..|+. +|+ +||+.||++.|=
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yG----Kdf~~I~~~~v~-~Kt~~~~v~fYY   52 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYG----KNFFRIRKELLP-NKETGELITFYY   52 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTC----SCHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhC----ccHHHHHHHHcC-CCcHHHHHHHHh
Confidence            356899999999999999995    37999998 588 799999998883

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.09  E-value=3.5e-06  Score=72.48  Aligned_cols=48  Identities=13%  Similarity=0.214  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      ....||+||+.+|.+++.+|+    .+|..||..|| +||+.||...|.....
T Consensus       132 ~s~~WTeEE~~lFleAl~kYG----KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYG----RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHS----SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            466899999999999999994    47999999999 7999999999976654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=98.05  E-value=3.2e-05  Score=64.33  Aligned_cols=146  Identities=13%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHH--cCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhh-------cc
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEA--FNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNR-------KA  126 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~--lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~-------~~  126 (214)
                      +-..||+.|...|.+++.+|+.. .+||+.|+..  |. ++|.++|...+..+...-......++......       +.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG   83 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            45789999999999999999532 3699999986  55 68999988766654321000000000000000       00


Q ss_pred             cc--------------hhhh-----hcccccccc--ccc---ccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHH
Q 047185          127 ID--------------MRVV-----QENCEDSKK--ESQ---ENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKI  182 (214)
Q Consensus       127 l~--------------~r~~-----~~~~~~~~s--~~~---~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kI  182 (214)
                      ..              -|..     ..-....+.  ...   ....+......||.++|..|+.++.+|+.   .+|+.|
T Consensus        84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~---g~w~~I  160 (211)
T 4b4c_A           84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGY---GSWEMI  160 (211)
T ss_dssp             CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCT---TCHHHH
T ss_pred             hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCc---CcHHHH
Confidence            00              0000     000000000  000   00001223457999999999999999986   479999


Q ss_pred             HhhC------------CCC--CHHHHHHHHHHHHHHHh
Q 047185          183 AAAV------------PGR--SKAACMKRFSDLKRDFR  206 (214)
Q Consensus       183 A~~v------------PGR--T~~qc~~Ry~~L~~~v~  206 (214)
                      -.-.            +.+  +..++..|..+|...+.
T Consensus       161 r~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~  198 (211)
T 4b4c_A          161 KMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS  198 (211)
T ss_dssp             HHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             HhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence            7522            123  46789999888776654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.95  E-value=1.4e-05  Score=56.77  Aligned_cols=45  Identities=16%  Similarity=0.263  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHH-HcCCCCCHHHHHHHHHH
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE-AFNGRHRVESVIKKAKE  105 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~-~lg~~RT~~qc~~k~k~  105 (214)
                      ....||+||..++..++.+||    .+|..|+. +|+ +||+.||+..|=.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG----Kdf~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG----KDFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC----SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC----ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            456899999999999999995    36999999 688 7999999998843

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.70  E-value=6.2e-05  Score=51.74  Aligned_cols=48  Identities=15%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCC-----CCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKD-----VPLRWEKIAA-AVPGRSKAACMKRFSD  200 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~-----~~~rW~kIA~-~vPGRT~~qc~~Ry~~  200 (214)
                      ..++|+|||.+|...|..|...     +..-|..||. .+|++|-..|++||..
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k   55 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK   55 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence            4689999999999999999432     3468999999 8999999999999964

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.66  E-value=0.00013  Score=54.71  Aligned_cols=54  Identities=13%  Similarity=0.252  Sum_probs=46.2

Q ss_pred             hhhccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185           51 QRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN----GRHRVESVIKKAKELGE  108 (214)
Q Consensus        51 ~~~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~  108 (214)
                      +.......+||.||+..|..++.+|.    .||-.|+..+.    .+||++++..||-.+..
T Consensus        24 Y~~~L~~~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           24 YQLYLHDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             HHHHTCBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            55556669999999999999999994    49999999993    36999999999987643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.53  E-value=8.7e-05  Score=69.94  Aligned_cols=46  Identities=15%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ...||+||..+|.+++.+|  |.  +|..||+.|| +||+.||...|....
T Consensus       380 ~~~WT~eE~~~f~~al~~y--Gk--dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKY--GR--DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHH--TT--CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHH--Cc--CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            6789999999999999999  43  7999999999 799999999997654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.41  E-value=0.00035  Score=52.22  Aligned_cols=47  Identities=17%  Similarity=0.336  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      -.||.|||..+..++++-++ ++..|..||..|+ +||+.||..|+++|
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            47999999999999999843 4789999999998 79999999999987

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.35  E-value=0.0002  Score=51.92  Aligned_cols=60  Identities=20%  Similarity=0.450  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhCC----C--CCCCcHHHHHhhCC----CCCHHHHHHHHHHHHHHHhchhcc
Q 047185          152 GGGVWNAGEDIALLNALKAFP----K--DVPLRWEKIAAAVP----GRSKAACMKRFSDLKRDFRSSKAG  211 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p----~--~~~~rW~kIA~~vP----GRT~~qc~~Ry~~L~~~v~~~k~~  211 (214)
                      ....||.+|-.+|+.++....    .  .....|..||..|-    .||+.||+.+|+.|...++.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~   72 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH   72 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            457899999999999987531    1  12358999998754    799999999999999999887653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.31  E-value=0.00082  Score=50.34  Aligned_cols=55  Identities=18%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-----CCCHHHHHHHHHHHHHHHhchh
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-----GRSKAACMKRFSDLKRDFRSSK  209 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-----GRT~~qc~~Ry~~L~~~v~~~k  209 (214)
                      +....||.||-..|..++..|.    .||.-|+....     .||.++.++||-.+...+.+..
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3457899999999999999994    79999998764     7999999999998877766554

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.13  E-value=0.00047  Score=49.94  Aligned_cols=52  Identities=15%  Similarity=0.196  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHh----CCCCC--CcchhhHHHHc---CCCCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVK----NPVGK--PKRWEVIAEAF---NGRHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~k----yP~Gt--~~RWe~IA~~l---g~~RT~~qc~~k~k~l~~  108 (214)
                      ...||.+|+.+|+.+...    |..|.  ...|+.||+.|   |-.||+.||..+|+.|..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            568999999999998753    22121  23699999987   347999999999998854

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.92  E-value=0.00016  Score=51.32  Aligned_cols=46  Identities=15%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      .||.|||..+...+++-++ ++..|..||..|+  ||+.||..||++|.
T Consensus        16 lWTReeDR~IL~~cq~~G~-s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGP-SSKTFAYLAAKLD--KNPNQVSERFQQLM   61 (70)
Confidence            5999999999999998743 4678999999995  99999999998863

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.87  E-value=0.0011  Score=59.10  Aligned_cols=53  Identities=13%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFR  206 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~  206 (214)
                      -.-+.||..+...|..|+..|+.   +.|..||..|+|||..+|+..|+.+.+.+.
T Consensus       108 eGF~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~  160 (304)
T 1ofc_X          108 QGFTAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEGKTPEEVIEYNAVFWERCT  160 (304)
T ss_dssp             SSCTTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred             hhhcccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcCCCHHHHHHHHHHHHHhHH
Confidence            46789999999999999999975   699999999999999999888888887773

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=96.79  E-value=0.0025  Score=43.56  Aligned_cols=49  Identities=10%  Similarity=0.218  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHhCC---CC--CCcchhhHHH-HcCCCCCHHHHHHHHHHh
Q 047185           57 EKEWNEEDIEILKKQMVKNP---VG--KPKRWEVIAE-AFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP---~G--t~~RWe~IA~-~lg~~RT~~qc~~k~k~l  106 (214)
                      ..+||.|||.+|.+.|..|-   ++  ...-|+.+|+ .++ ++|-.+|..||...
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~   56 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKH   56 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHH
Confidence            35899999999999999983   21  2245999999 677 89999999999653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.40  E-value=0.0076  Score=45.05  Aligned_cols=49  Identities=14%  Similarity=0.306  Sum_probs=42.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC----CCCCHHHHHHHHHHhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN----GRHRVESVIKKAKELG  107 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg----~~RT~~qc~~k~k~l~  107 (214)
                      .....||.||...|-.++.+|-    -||-.|+..+.    ..||++++..||-.+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999994    59999999875    3699999999997664

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=95.88  E-value=0.062  Score=47.03  Aligned_cols=48  Identities=15%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCC-cchhhHHHH--cCCCCCHHHHHHHHHHh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKP-KRWEVIAEA--FNGRHRVESVIKKAKEL  106 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~-~RWe~IA~~--lg~~RT~~qc~~k~k~l  106 (214)
                      ..++||+-|+..|.+++.+|  |.+ .||+.|+..  |. .++...+..-|.+|
T Consensus         2 p~~~ltekEiR~l~Ra~~kf--G~~~~R~e~I~~dA~L~-~ks~~~i~~~~~~l   52 (270)
T 2xb0_X            2 PLGSIGESEVRALYKAILKF--GNLKEILDELIADGTLP-VKSFEKYGETYDEM   52 (270)
T ss_dssp             TTCCCCHHHHHHHHHHHHHH--SSCTTCHHHHHHTTSSC-CCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHhcccc-cCCHHHHHHHHHHH
Confidence            36789999999999999999  443 599999874  44 58887777666654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.24  E-value=0.26  Score=34.24  Aligned_cols=55  Identities=11%  Similarity=0.114  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh--CCCCCHHHHHHHHHHHHHHHh
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA--VPGRSKAACMKRFSDLKRDFR  206 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~--vPGRT~~qc~~Ry~~L~~~v~  206 (214)
                      ...-.||+|....|..|+..++. ..--+..|...  |+|.|-.+|+.|-....-.++
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            45679999999999999999973 23457888754  789999999999876555443

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.10  E-value=0.097  Score=43.04  Aligned_cols=54  Identities=13%  Similarity=0.051  Sum_probs=41.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA--AVPGRSKAACMKRFSDLKRD  204 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~--~vPGRT~~qc~~Ry~~L~~~  204 (214)
                      ......||..|-..|..|+..|+. ...||..|+.  .+++||..++..-|..+...
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999962 1369999995  48899999999877766544

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=90.46  E-value=0.69  Score=32.05  Aligned_cols=48  Identities=13%  Similarity=0.034  Sum_probs=38.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC-CCCHHHHHHHHHH
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG-RHRVESVIKKAKE  105 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~-~RT~~qc~~k~k~  105 (214)
                      .-.||.|....+..||...+ +..--+..|.+.|+- +.|..+|.-+.+.
T Consensus         7 r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            7 RVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            44799999999999999996 344459999999973 5799998766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	1e-09
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	3e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-04

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 1e-09
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK 209
           W   +   L  ++  FP   P RWEKIA  + GRS      +   LK     S 
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSP 56

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 3e-09
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 58  KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108
            EW EED+  L + MVK P G P RWE IA        V  V  KAK+L +
Sbjct: 2   PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 50

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 50.3 bits (120), Expect = 1e-09
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG 211
           G  W+A E+ A   AL  + KD P RW  +A AV GR+     K +  L  D +  ++G
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 59

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201
           W   +   L  AL+ +P+     W+KIA  VP +SK  C+ R+  L
Sbjct: 15  WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFR 206
           W+  E           PK+    +  IA+ +  ++ A C+  +   K++  
Sbjct: 20  WSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTKKNEN 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.75
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.67
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.65
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.57
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.52
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.52
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.51
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.38
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.32
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.31
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.31
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.27
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.26
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.25
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.22
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.22
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.13
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.12
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.11
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.09
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.06
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.03
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.02
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.94
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.93
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.81
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.72
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.53
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.46
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.29
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.25
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	97.95
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.75
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	96.01
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.6
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	95.39
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.98
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.21
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	91.93
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	91.68
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	84.91
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	81.23

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.75  E-value=9.6e-19  Score=121.12  Aligned_cols=58  Identities=34%  Similarity=0.595  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG  211 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~  211 (214)
                      .+||++||.+|+.||..|+.+.+++|.+||..|||||..||++||+.|.++|+.++++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg   59 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG   59 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccC
Confidence            5899999999999999999988889999999999999999999999999999999876

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5e-17  Score=111.54  Aligned_cols=52  Identities=44%  Similarity=0.735  Sum_probs=48.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcc
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKK  110 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~  110 (214)
                      ..+||.||+.+|.+|+.+||+||++||++||++||  ||++||+.+|++|.+..
T Consensus         1 a~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHHHhc
Confidence            36899999999999999999999999999999995  99999999999997643

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8e-17  Score=110.19  Aligned_cols=52  Identities=31%  Similarity=0.606  Sum_probs=48.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      .....+||.+||.+|+.||..|+.+.+.+|.+||.+|||||..||++||+.|
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            4567899999999999999999987778999999999999999999999987

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1e-15  Score=104.94  Aligned_cols=54  Identities=31%  Similarity=0.522  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhch
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSS  208 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~  208 (214)
                      ..||.+|+++|+.||..||.++++||++||.+| |||..||+.||+.|.+++...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~~~~   55 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS   55 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhcccC
Confidence            579999999999999999999999999999999 999999999999999987543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-15  Score=101.12  Aligned_cols=51  Identities=24%  Similarity=0.477  Sum_probs=47.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ...++||.|||.+|..+|.+||.|++.+|..||.+|| +||+.||+.||+.|
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLL   60 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHHC
Confidence            3567899999999999999999999999999999999 79999999999865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=6.9e-15  Score=96.23  Aligned_cols=46  Identities=28%  Similarity=0.513  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      +++||+|||.+|+.++.+|+    .+|..||..|||||..||++||..+.
T Consensus         1 K~~WT~eED~~L~~~v~~~G----~~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS----SCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHh----hHHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            46999999999999999995    69999999999999999999998764

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.51  E-value=1.3e-14  Score=99.95  Aligned_cols=51  Identities=22%  Similarity=0.410  Sum_probs=47.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~  108 (214)
                      +++||.||+.+|..++++||.|.+++|.+||.+|+ +||+.||..||+.|..
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999 7999999999987743

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=4e-14  Score=94.24  Aligned_cols=46  Identities=28%  Similarity=0.591  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      .+++||++||.+|..++.+|+.   .+|..||..|||||..||++||..
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qc~~Rw~~   47 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCCHHHHHHHHHh
Confidence            5789999999999999999963   589999999999999999999975

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.6e-13  Score=90.39  Aligned_cols=47  Identities=23%  Similarity=0.451  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      ++.||++||..|..++..|+.   ..|..||..|||||+.||++||...+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCCHHHHHHHHHhhC
Confidence            368999999999999999963   58999999999999999999998643

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-13  Score=88.37  Aligned_cols=44  Identities=27%  Similarity=0.531  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      ..||.+||.+|+.++..|+.   .+|..||..|||||+.||++||..
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~---~nW~~Ia~~~~~Rt~~Qcr~r~~~   45 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMK   45 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCC---ccHHHHHHHcCCCCHHHHHHHHHH
Confidence            35999999999999999964   589999999999999999999975

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.7e-12  Score=89.09  Aligned_cols=48  Identities=19%  Similarity=0.274  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDF  205 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v  205 (214)
                      ..||+|||.+|+.+|..|+    .+|..||.+|||||..||++||..+....
T Consensus         3 ~~WT~eEd~~l~~~~~~~G----~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG----RRWTKISKLIGSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC----SCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhc----chHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            4699999999999999996    59999999999999999999998655443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-12  Score=86.54  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~  202 (214)
                      .++||+|||.+|..++.+|+.   .+|..||..+|  |||+.||++||..|.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~---~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            579999999999999999963   59999998865  999999999999875

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=4.2e-14  Score=103.37  Aligned_cols=74  Identities=11%  Similarity=0.019  Sum_probs=60.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCC--CCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185           57 EKEWNEEDIEILKKQMVKNPV--GKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE  134 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~--Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~  134 (214)
                      .+.||.|||++|.++|.+||.  +....|..||.+|+ +||..||..||...+                    +|     
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L--------------------~p-----   54 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYL--------------------SK-----   54 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTT--------------------GG-----
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHc--------------------Cc-----
Confidence            468999999999999999953  22345999999998 799999999997653                    23     


Q ss_pred             ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhC
Q 047185          135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAF  171 (214)
Q Consensus       135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~  171 (214)
                                     .++.++||.+||++|..+...+
T Consensus        55 ---------------~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1          55 ---------------RLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             ---------------GCCCEECBCTTSCBCBCTTSCB
T ss_pred             ---------------cccCCCCCCchhHHHHHHhhcc
Confidence                           4788899999999887765544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.3e-12  Score=82.56  Aligned_cols=45  Identities=16%  Similarity=0.302  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ..||.||+.+|.++|++|  |. ++|..||.+|| +||+.||..||..+
T Consensus         2 ~~Wt~eEd~~L~~~v~~~--G~-~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDC--GF-GNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHT--CT-TCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH--CC-ccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            469999999999999999  44 47999999999 79999999999753

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.9e-12  Score=85.05  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ..++||.|||.+|.++|.+|+  . .+|..||..|+ +||..||..||..++
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g--~-~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYG--P-KRWSVIAKHLK-GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHC--T-TCHHHHHTTST-TCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHC-CCCHHHHHHHHHhhC
Confidence            478999999999999999994  3 47999999998 799999999998654

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.2e-12  Score=84.22  Aligned_cols=48  Identities=17%  Similarity=0.351  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA--VPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~--vPGRT~~qc~~Ry~~L~~  203 (214)
                      ..+||++||.+|..++..|+.   .+|..||..  ++|||..||++||+.|..
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---ChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            569999999999999999963   589999987  559999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=4.9e-12  Score=92.18  Aligned_cols=54  Identities=19%  Similarity=0.348  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCC--CCCcHHHHHhhCCCCCHHHHHHHHHH-HHHHHh
Q 047185          153 GGVWNAGEDIALLNALKAFPKD--VPLRWEKIAAAVPGRSKAACMKRFSD-LKRDFR  206 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~--~~~rW~kIA~~vPGRT~~qc~~Ry~~-L~~~v~  206 (214)
                      ++.||+|||.+|..++..||..  ....|..||..|||||+.||++||+. |...+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~   57 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   57 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCcccc
Confidence            4689999999999999999641  12359999999999999999999985 555543

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=7.3e-12  Score=82.26  Aligned_cols=47  Identities=23%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ++.||.|||++|..+|++|+.   +.|..||.+|+ +||..||..||..++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP-NRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHC-CCCHHHHHHHHHhhC
Confidence            368999999999999999953   47999999998 799999999997754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2e-11  Score=83.85  Aligned_cols=46  Identities=13%  Similarity=0.372  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK  202 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~  202 (214)
                      ...||++||.+|..++..||    .+|..||.+|||||..||++||..+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G----~~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS----SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC----chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46799999999999999996    58999999999999999999997654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=5.7e-11  Score=87.83  Aligned_cols=58  Identities=17%  Similarity=0.326  Sum_probs=49.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhch
Q 047185          150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSS  208 (214)
Q Consensus       150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~  208 (214)
                      ......||.|||+.|++.+++++. ...-|..||..|+|||.+||++||..|...+...
T Consensus        30 G~~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~   87 (95)
T d1ug2a_          30 GEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999962 1234999999999999999999999999888654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.9e-11  Score=84.81  Aligned_cols=47  Identities=15%  Similarity=0.249  Sum_probs=42.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL  201 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L  201 (214)
                      ....+||++||.+|+.++..|+    .+|..||.+|||||..||++||...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G----~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHP----KNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTT----SCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHC----CcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4557899999999999999996    5899999999999999999999754

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=5.2e-11  Score=77.36  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      +.+||.|||.+|..++.+|+    .+|..||.+|+ +||..||..+|..++
T Consensus         1 K~~WT~eED~~L~~~v~~~G----~~W~~Ia~~~~-gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLP-GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS----SCHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHh----hHHHHHHhHcC-CCCHHHHHHHHHHHc
Confidence            47999999999999999994    37999999998 799999999997653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.4e-10  Score=76.61  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-CCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-GRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-~~RT~~qc~~k~k~l~  107 (214)
                      .++||.|||++|..+|.+|+.   ++|..||..++ .+||..||..+|+.|.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~---~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            579999999999999999953   47999999753 3799999999998874

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.1e-10  Score=76.58  Aligned_cols=49  Identities=16%  Similarity=0.406  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-CCCCHHHHHHHHHHhhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-GRHRVESVIKKAKELGE  108 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-~~RT~~qc~~k~k~l~~  108 (214)
                      ..+||.|||.+|..+|.+|  |+ .+|..||..++ .+||..||..+|+.+..
T Consensus         2 r~~WT~eEd~~L~~~V~~~--G~-~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKY--GE-GNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHH--CT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh--CC-ChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            5789999999999999999  43 47999999742 37999999999998754

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.02  E-value=2.3e-10  Score=82.37  Aligned_cols=47  Identities=17%  Similarity=0.286  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR  203 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~  203 (214)
                      .+||.|||.+|..+|..|+.   .+|..|+..    ++|||..||++||..|+.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc---ccHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            48999999999999999964   589999974    799999999999987653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.4e-10  Score=75.58  Aligned_cols=45  Identities=24%  Similarity=0.472  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ..||.||+.+|..++.+|  |  .+|..||.+|+ +||..||..+|..++
T Consensus         3 ~~WT~eEd~~l~~~~~~~--G--~~W~~Ia~~~~-~Rt~~q~k~ry~~~~   47 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKF--G--RRWTKISKLIG-SRTVLQVKSYARQYF   47 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHT--C--SCHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh--c--chHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            469999999999999999  4  37999999999 799999999997654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.93  E-value=1.5e-09  Score=77.96  Aligned_cols=48  Identities=15%  Similarity=0.196  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHc---CCCCCHHHHHHHHHHhhh
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAF---NGRHRVESVIKKAKELGE  108 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~l---g~~RT~~qc~~k~k~l~~  108 (214)
                      ++||.|||.+|..+|.+|+  + .+|..|+..+   ..+||..||..||+.++.
T Consensus         1 r~WT~eEd~~L~~~V~~~G--~-~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLG--T-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHC--S-SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHC--c-ccHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            5899999999999999994  3 4799999864   337999999999988754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.9e-09  Score=72.76  Aligned_cols=46  Identities=13%  Similarity=0.242  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ...||.+|+.+|..++.+||    .+|..||.+|+ +||+.||+.+|..+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G----~~w~~Ia~~~~-~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG----RDFQAISDVIG-NKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS----SCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC----chHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            46799999999999999994    36999999999 799999999998764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=5.2e-09  Score=72.15  Aligned_cols=46  Identities=17%  Similarity=0.328  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ...+||.||+.+|..++.+|  |+  +|..||.+|+ +||..||+.+|-..
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~--G~--~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQH--PK--NFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHT--TS--CSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH--CC--cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            34679999999999999999  43  7999999999 79999999999654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=7.5e-08  Score=64.37  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAA-AVPGRSKAACMKRFSD  200 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~-~vPGRT~~qc~~Ry~~  200 (214)
                      ..||++|-.+|+.++..||    ..|.+|+. .||+||..||.+.|-.
T Consensus         2 d~WT~eE~~~F~~~~~~yG----Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYG----KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTC----SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc----ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5799999999999999996    59999997 6899999999999853

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=4.6e-07  Score=66.47  Aligned_cols=49  Identities=16%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG  107 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~  107 (214)
                      ...||.|||.+|...+++|+. ...-|..||..|+ +||..||..||+.|.
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            457999999999999999942 2234999999998 799999999998874

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.9e-07  Score=61.27  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185           56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL  106 (214)
Q Consensus        56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l  106 (214)
                      ....|+++|++.|-.|+.-.|...++=|-.||.++| +||+++|-.+|.+-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~   56 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMEN   56 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhC
Confidence            457899999999999999999999999999999999 89999999999764

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=7.6e-07  Score=59.30  Aligned_cols=44  Identities=18%  Similarity=0.315  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE  105 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~  105 (214)
                      ..||+||..++..++.+||    .+|.+|+..|.++||+.||+..|=.
T Consensus         2 d~WT~eE~~~F~~~~~~yG----Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYG----KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTC----SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc----ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999994    3899999865338999999998843

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.3e-05  Score=55.36  Aligned_cols=50  Identities=34%  Similarity=0.613  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD  200 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~  200 (214)
                      .....|+++|-..|..|+..+|+..+.-|..+|..|..||+.+|-..|.+
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999999999975

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.0017  Score=43.75  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCCcH--HHHHhh--CCCCCHHHHHHHHHHHH
Q 047185          152 GGGVWNAGEDIALLNALKAFPKDVPLRW--EKIAAA--VPGRSKAACMKRFSDLK  202 (214)
Q Consensus       152 ~~~~WT~eED~~L~~al~~~p~~~~~rW--~kIA~~--vPGRT~~qc~~Ry~~L~  202 (214)
                      ..-.||+|+...|+.||..|+.   ++|  ..|...  |||.|..||+.|-....
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~---~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGV---ERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCT---TTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc---cccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999964   455  566543  99999999999986543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.01  E-value=0.0037  Score=40.43  Aligned_cols=43  Identities=23%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185           59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE  105 (214)
Q Consensus        59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~  105 (214)
                      .||.-|...+++++.+|  |. ++-+.||..|. ++|.++|...++-
T Consensus         1 ~WnrrdF~~Fi~a~eky--GR-~d~~~Ia~e~~-~Kt~eEV~~Y~~v   43 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKY--GR-DDIDNIAKDVE-GKTPEEVIEYNAV   43 (52)
T ss_dssp             TCCHHHHHHHHHHHHHH--CT-TCHHHHTTSST-TCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH--HH-hhHHHHHHHhc-CCCHHHHHHHHHH
Confidence            49999999999999999  54 57899999997 6999998766543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.60  E-value=0.011  Score=39.63  Aligned_cols=47  Identities=15%  Similarity=0.151  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcch--hhHHHHcC-CCCCHHHHHHHHHHh
Q 047185           57 EKEWNEEDIEILKKQMVKNPVGKPKRW--EVIAEAFN-GRHRVESVIKKAKEL  106 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~Gt~~RW--e~IA~~lg-~~RT~~qc~~k~k~l  106 (214)
                      .-.||+|+...+..|+..|+  . ++|  ..|.+.|+ .++|..||.-+.+.+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG--~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLG--V-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHC--T-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC--c-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34699999999999999994  3 356  68999885 368999999887654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.39  E-value=0.026  Score=36.28  Aligned_cols=48  Identities=13%  Similarity=0.221  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185          155 VWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDF  205 (214)
Q Consensus       155 ~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v  205 (214)
                      .|+.-+=..|..|+.+|+.   +.-..||..|.|||..+|+.-++..-+..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR---~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry   48 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGR---DDIDNIAKDVEGKTPEEVIEYNAVFWERC   48 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             CCCHHHHHHHHHHHHHHHH---hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5999999999999999975   68899999999999999876665554443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.037  Score=34.52  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh---hCCCCCHHHHHHHHHHH
Q 047185          154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAA---AVPGRSKAACMKRFSDL  201 (214)
Q Consensus       154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~---~vPGRT~~qc~~Ry~~L  201 (214)
                      ..||.||-.-|..+++.|    +..|..|-=   +-|||+..+....|..|
T Consensus         2 knft~eEv~YL~~GVK~~----G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTM----GNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHH----CSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHh----cchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            479999999999999999    479999984   55699999999999876

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.073  Score=33.14  Aligned_cols=45  Identities=20%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC--CCCCHHHHHHHHHHh
Q 047185           58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN--GRHRVESVIKKAKEL  106 (214)
Q Consensus        58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg--~~RT~~qc~~k~k~l  106 (214)
                      ..||+||+.-|-++|.+|+    +-|..|-=.++  .+|+.-+...+|..|
T Consensus         2 knft~eEv~YL~~GVK~~G----~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG----NHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC----SCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc----chhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            5799999999999999993    46999987664  479999999888654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.93  E-value=0.16  Score=37.96  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=46.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh------------hCCCCCHHHHHHHHHHHHHHHhc
Q 047185          151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA------------AVPGRSKAACMKRFSDLKRDFRS  207 (214)
Q Consensus       151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~------------~vPGRT~~qc~~Ry~~L~~~v~~  207 (214)
                      .++...|.+||..|+..+..|+-+..+-|+.|-.            ++-.||+.++..|...|+..|.+
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            3455799999999999999999876667999742            24579999999999999877654

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.68  E-value=0.18  Score=32.78  Aligned_cols=48  Identities=15%  Similarity=0.278  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCC-----CCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 047185          153 GGVWNAGEDIALLNALKAFPKD-----VPLRWEKIAA-AVPGRSKAACMKRFSD  200 (214)
Q Consensus       153 ~~~WT~eED~~L~~al~~~p~~-----~~~rW~kIA~-~vPGRT~~qc~~Ry~~  200 (214)
                      ..++|.+||.+|..-|..+...     +..=|..++. .+|.+|-..-++||..
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K   55 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK   55 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            4689999999999999998543     2357999984 7899999999999954

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.91  E-value=0.64  Score=34.51  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=44.6

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-----------CCCCHHHHHHHHHHhhh
Q 047185           55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-----------GRHRVESVIKKAKELGE  108 (214)
Q Consensus        55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-----------~~RT~~qc~~k~k~l~~  108 (214)
                      .++...|+|||.-|.-.+.+|+-|..+=|+.|-..+-           .+||+.++-.|...|..
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  111 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHH
Confidence            4667899999999999999997777666999977663           27999999999887643

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.23  E-value=2.7  Score=26.88  Aligned_cols=48  Identities=10%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCC-----CCcchhhHHH-HcCCCCCHHHHHHHHHH
Q 047185           57 EKEWNEEDIEILKKQMVKNPVG-----KPKRWEVIAE-AFNGRHRVESVIKKAKE  105 (214)
Q Consensus        57 ~~~WT~EE~~lL~kav~kyP~G-----t~~RWe~IA~-~lg~~RT~~qc~~k~k~  105 (214)
                      ..++|.|||+.|.+-|..|-.+     ...=|+..+. .++ .+|-..-..||..
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K   55 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLK   55 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHH
Confidence            3579999999999999887332     1233998886 344 7888888888854