Citrus Sinensis ID: 047194

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQFLEKRIEGSFVLQE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHcccccccEEEEEEEccccccccEEEEEEEEcccccccccEEEEEEEEEcccccccEEEEEEEccccHHHHccccccccccccccHHHHHHcccccEEEEEEEEEccccccEEEEccccccccEEccccEEEEEEEEEEEccEEEEEEEEcccccccccccccccEEEEEccccccccccccccccccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccccccccEEEEEEEcccccccccccEEEEEEEcccccccccEEEEEEccccHHHHHccccccHHHccccHHHHHHHHHcccEEEEEEcccccEEEEEEcccccccccccccccEEEEEEEEEEccccEEEccccccccccEEEEcccccEEEEcccccccccccccccccccccHHHcccccEEEcc
Coil and Loop (DISEMBL)
mgpdsdsasnpnggwggraQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADslsgekfskeqasrdpdnffnirmltcpaaemvdgskLLYLEQAfwrtpqkpfrqrfymvkpcpkelkcdvevSSYAIREVEEyknfcdrprdqrplpeevIGDIGEHLTTIHLRrcdrgkrclyegstppggfpnswqngatystSELAVLknneihtwdrgfdddgnqvwgvkagpyefkpapsssysdmfsplnfppqqflekriegsfvlqe
Flexible Loop (DISEMBL)
mgpdsdsasnpnggWGGRAQGLFVKAAVLIGGAVLLKrltksktrwdharivadslsgekfskeqasrdpdnffNIRMLTCPAAEMVDGSKLLYLEQAFwrtpqkpfrqRFYMvkpcpkelkcdvEVSSYAIREveeyknfcdrprdqrplPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGstppggfpnswQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQFLEKRIEGSFVLQE
Low Complexity Region (SEG)
MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQFLEKRIEGSFVLQE
Disordered region (IsUnstruct)
**************WGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVA******************NFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDR******LPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYE************************************
Disordered Region (DISOPRED)
********************GLFVKAAVLIGGAVLLK*********DHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQ***KRIEGSFV***
Disordered Region (DISEMBL)
***********NGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQFLEKRIEGSFVLQE
Disordered Region (DISPRO)
**************WGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQFLEKRIEGSFVLQ*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQFLEKRIEGSFVLQE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
B0JGA0	202	Chromophore lyase CpcT/Cp	yes	no	0.688	0.920	0.306	3e-16
Q7NNH3	229	Chromophore lyase CpcT/Cp	yes	no	0.629	0.742	0.324	2e-13
Q8YZ40	198	Phycocyanobilin lyase Cpc	yes	no	0.607	0.828	0.285	2e-07
Q2JT26	199	Chromophore lyase CpcT/Cp	yes	no	0.640	0.869	0.275	3e-07
Q2JWI9	218	Chromophore lyase CpcT/Cp	no	no	0.670	0.830	0.259	4e-06
Q10UX2	195	Chromophore lyase CpcT/Cp	yes	no	0.603	0.835	0.289	1e-05
Q2JRQ9	198	Chromophore lyase CpcT/Cp	no	no	0.629	0.858	0.264	1e-05
P74371	196	Chromophore lyase CpcT/Cp	N/A	no	0.592	0.816	0.268	5e-05

>sp|B0JGA0|CPXT3_MICAN Chromophore lyase CpcT/CpeT 3 OS=Microcystis aeruginosa (strain NIES-843) GN=cpcT3 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 13/199 (6%)

Query: 39  LTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAA-EMVDGSKLLYLEQ 97
           LT+S       + VA+ L G   ++EQA  +P     ++M TC         S  LY EQ
Sbjct: 12  LTQSLPLNPQVQGVANHLIGVMDTREQAQTNP-RIAKVQMTTCAVDFSPKQDSIYLYQEQ 70

Query: 98  AFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIG 157
           A      +P+RQR  +++P        VE  +Y +     + NFC++   +R L    + 
Sbjct: 71  AIIDRLNQPYRQRILVIQPSAD--NSTVESKAYKLNNAPNFINFCNKDLTERELN---VS 125

Query: 158 DIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRG 217
           D+ E + T+ L+    G    Y G TPP G P + + GA   T+ + +L +  + T DRG
Sbjct: 126 DLAESVCTVFLQPIAGG----YRGETPPQGCPTNAR-GAVKITNTI-ILHSQGMDTSDRG 179

Query: 218 FDDDGNQVWGVKAGPYEFK 236
           +D  G QVWG +   Y+F+
Sbjct: 180 YDSLGQQVWGAQDNVYQFR 198

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
Microcystis aeruginosa (strain NIES-843) (taxid: 449447)
EC: 4EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q7NNH3|CPXT1_GLOVI Chromophore lyase CpcT/CpeT 1 OS=Gloeobacter violaceus (strain PCC 7421) GN=cpcT1 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 87/191 (45%), Gaps = 21/191 (10%)

Query: 52  VADSLSGEKFSKEQASRD---PDNFFNIRMLTCPAAEMVDGSKLLYL--EQAFWRTPQKP 106
           V   L+G   + +QA  D   PD    +RM TC      D SK +YL  EQ        P
Sbjct: 50  VVTRLTGIMTTTQQAQSDAARPD----VRMTTCSVQLEGDKSKAIYLYQEQTMSNNLGAP 105

Query: 107 FRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPL-PEEVIGDIGEHLTT 165
           +RQR   +          VE + +   E +     C +P  +R + P  + GD      T
Sbjct: 106 YRQRLLRIAASADGRA--VESAGFKFVEAKPLAGLCAKPAAERLIAPMALDGD-----PT 158

Query: 166 IHLRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQV 225
             +R    G +  Y G+TP GG  ++ + GA   T+E+ + K   + T DRGFD  GNQV
Sbjct: 159 CTVRLVQAGDK--YMGTTPEGGCQSNVR-GAARITNEITLYKEG-MDTRDRGFDAQGNQV 214

Query: 226 WGVKAGPYEFK 236
           WG K  PY F+
Sbjct: 215 WGAKEEPYRFR 225

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8YZ40|CPCTL_NOSS1 Phycocyanobilin lyase CpcT homolog OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=cpcT2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 39/203 (19%)

Query: 52  VADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRF 111
           + + L+GE  ++EQA  +P  F ++R+   P     D S  L+ EQA      +P+RQR 
Sbjct: 10  LGNYLAGEFDNREQALGEPIWFVHLRLWQRPVDLFSDDSITLFAEQANIVNLDRPYRQRI 69

Query: 112 YMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEH---LTTIHL 168
             + P P     D E   Y    V+ Y      P++    P  +IG  G H   L T+  
Sbjct: 70  LRLMPAP-----DSETGLY----VQYYM-----PKN----PSALIG-AGRHPDLLKTLTP 110

Query: 169 RRCDRGKRCLYEGSTPPGGFPNSWQNGA--------TYSTSELAV-------LKNNEIHT 213
           ++ +    C+   S      PNS+Q  A        T+S  E  V       +   E+HT
Sbjct: 111 QQLELLPGCVLSVSQQTVA-PNSYQFTASPLPNTCCTFSYLENTVQVSLGFAVTETELHT 169

Query: 214 WDRGFDDD-GNQVWGVKAGPYEF 235
           +D+G D + G   WG   GPY +
Sbjct: 170 YDKGIDQETGKATWGAIVGPYRY 192

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (By similarity). In vitro is not seen to act as a chromophore lyase for ApcA1, ApcA2, ApcB, ApcD, ApcF, CpcB or PecB, the lyase activity is therefore unsure.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q2JT26|CPXT2_SYNJA Chromophore lyase CpcT/CpeT 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=cpcT2 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 52  VADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRF 111
           +A  L+G+  ++EQA  +P  F +IR+   P    V G    Y+EQA+    ++P+RQ  
Sbjct: 12  MARWLAGDFSNQEQAWENPPFFASIRVAYRPLPTAVLGGIGFYVEQAYSGHLEEPYRQAV 71

Query: 112 YMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRC 171
             +     ++   + + +Y   + + ++  C R R ++ L +    D+       +L  C
Sbjct: 72  VEL----TQVGDGIVIRNYRPLQPQRWRG-CARGRAEQ-LSQLSAADLA------YLPGC 119

Query: 172 D---RGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGN-QVWG 227
           D   + +  L+ G T PG      +NG T        L  NE  + DRG D   + QVWG
Sbjct: 120 DVQVKRQGSLFVGVTEPGCRCCVVRNGQTTYLQTTLHLSENEFCSHDRGMDPVTHRQVWG 179

Query: 228 VKAGPYEFK 236
             AGP+ F+
Sbjct: 180 AVAGPFRFR 188

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q2JWI9|CPXT1_SYNJA Chromophore lyase CpcT/CpeT 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=cpcT1 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 23/204 (11%)

Query: 53  ADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFY 112
           AD L G   ++ QA  +P  F  + +       +       + EQ    TP + +R R  
Sbjct: 36  ADWLEGYYSNRAQAMAEPVWFVPVSLWYVRLPHLFSEGIGFFTEQFNEHTPGRFYRSRVL 95

Query: 113 MVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCD 172
            V   P      + + +Y +R+   +       +D + L +  + D+ +HL    +    
Sbjct: 96  QVLADP------LRIENYKLRDQAAWAGAS---QDLQRLAQLSLSDL-QHLPGCRILVEK 145

Query: 173 RGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFD-DDGNQVWGVKAG 231
           R     Y G   PGG        +TY   E   L   E  TWDRGFD   G Q WG +AG
Sbjct: 146 RAD--CYHGQMLPGGGCRLNPGDSTYIHIEFD-LTAQEFITWDRGFDATTGQQTWGSRAG 202

Query: 232 PYEFKPAPSSSYSDMFSPLNFPPQ 255
           PY ++            P+ FPP+
Sbjct: 203 PYRYQKR---------IPVVFPPR 217

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q10UX2|CPXT2_TRIEI Chromophore lyase CpcT/CpeT 2 OS=Trichodesmium erythraeum (strain IMS101) GN=cpcT2 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 13/176 (7%)

Query: 62  SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
           +++QA  +P  F +IR+   P    +     LYLEQA+  T  +P+R R  ++K  P E 
Sbjct: 20  NQQQAFDNPPLFAHIRVCMRPLPYQLLNGLSLYLEQAYDITLNQPYRVR--VLKLVPSE- 76

Query: 122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEG 181
              +E+ +Y I +  E+      P+  + L  E I    + L          GK   ++G
Sbjct: 77  -NHIEIENYIIDQEAEFYGASRDPQRLKNLKTEYI----KKLPGCTFITKWTGKS--FKG 129

Query: 182 STPPG-GFPNSWQNGATYSTSELAVLKNNEIHTWDRGFD-DDGNQVWGVKAGPYEF 235
              PG G     +  +TY  S   + ++  I + D G+D +   QVWG  AGP+EF
Sbjct: 130 EVEPGKGCTVVREGKSTYLKSYFEINEHKFI-SHDTGYDPETDQQVWGAIAGPFEF 184

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q2JRQ9|CPXT3_SYNJA Chromophore lyase CpcT/CpeT 3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=cpcT3 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 19/189 (10%)

Query: 52  VADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRF 111
           +A  ++G   +  QA  +P  F NI +  CP    V      Y+EQ +   P +P+RQR 
Sbjct: 10  LATWMAGHFNNLHQAIAEPVWFANIHVYQCPLPWSVFQGIGFYVEQLYDIYPDQPYRQRV 69

Query: 112 YMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDI----GEHLTTIH 167
             +   P  ++    + +YA+   E YK      RD   L      ++    G  +    
Sbjct: 70  IHLFETPDGIR----IQNYALGSPEAYKC---AGRDLGKLASLAAAELELLPGCAVQVEW 122

Query: 168 LRRCDRGKRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQ-VW 226
              C RG+      S P  G     +   TY  SE  +   +  H+ D+G D + +Q VW
Sbjct: 123 TGSCYRGR------SVPGKGCIVERKGRTTYLYSEFEI-GADYFHSLDQGRDPETDQVVW 175

Query: 227 GVKAGPYEF 235
           G  +GP+ F
Sbjct: 176 GSLSGPFRF 184

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P74371|CPXT_SYNY3 Chromophore lyase CpcT/CpeT OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=cpcT PE=3 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 62  SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
           ++ QA  +P  + +IR+   P  +   G +LL+LEQA+    Q+P+R R   +K      
Sbjct: 20  NQAQAFENPPFYAHIRVAIRPLDQAKFGDRLLFLEQAYDFMLQRPYRLRVLKLKVVEDH- 78

Query: 122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKR---CL 178
              +E+ ++ +++ E+   F    RD   L +    D    L  +H   CD         
Sbjct: 79  ---IEIENFKVKDEEK---FYGAARDLGKLAQLTPAD----LEPMH--GCDMIVEWTGTS 126

Query: 179 YEGSTPPGGFPNSWQNGA-TYSTSELAVLKNNEIHTWDRGFDDDGNQ-VWGVKAGPYEF 235
           ++G   PG      ++G  TY  +   V +   I + DRG+D + N+ VWG  AG + F
Sbjct: 127 FKGEVQPGRQCRVMRDGKETYLENSFEVSETGLI-SLDRGYDPETNERVWGSVAGAFHF 184

Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255540025	265	conserved hypothetical protein [Ricinus	0.981	1.0	0.829	1e-129
224122242	273	predicted protein [Populus trichocarpa]	0.981	0.970	0.828	1e-129
317106609	265	JHL07K02.6 [Jatropha curcas]	0.981	1.0	0.822	1e-127
356516466	268	PREDICTED: chromophore lyase CpcT/CpeT 3	0.985	0.992	0.796	1e-127
225456513	267	PREDICTED: chromophore lyase CpcT/CpeT 3	0.988	1.0	0.811	1e-126
356508878	266	PREDICTED: chromophore lyase CpcT/CpeT 3	0.970	0.984	0.805	1e-125
388500552	265	unknown [Lotus japonicus]	0.933	0.950	0.806	1e-121
15241343	269	protein crumpled leaf [Arabidopsis thali	0.977	0.981	0.765	1e-117
297795903	269	hypothetical protein ARALYDRAFT_918134 [	0.977	0.981	0.762	1e-117
21554618	269	unknown [Arabidopsis thaliana]	0.977	0.981	0.762	1e-116

>gi|255540025|ref|XP_002511077.1| conserved hypothetical protein [Ricinus communis] gi|223550192|gb|EEF51679.1| conserved hypothetical protein [Ricinus communis]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/270 (82%), Positives = 243/270 (90%), Gaps = 5/270 (1%)

Query: 1   MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEK 60
           M   S+S SN   GW  RA+G+ +K  VLIGGAVL+KRLTKS TRWDHAR V+ SLSGEK
Sbjct: 1   MVTGSESESN---GWS-RARGIVIKTLVLIGGAVLVKRLTKSTTRWDHARFVSQSLSGEK 56

Query: 61  FSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKE 120
           FS+EQA+RDPDN+FNIRMLTCPAAEMVDGSK+LY EQAFWRTPQKPFRQRFYMVKPCPKE
Sbjct: 57  FSREQAARDPDNYFNIRMLTCPAAEMVDGSKVLYFEQAFWRTPQKPFRQRFYMVKPCPKE 116

Query: 121 LKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYE 180
           LKCDVEVSSYAIR+ EEYKNFCDRP+DQRPLPEEVIGDI EHLTTI+L RCDRGKRCLYE
Sbjct: 117 LKCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIAEHLTTIYLNRCDRGKRCLYE 176

Query: 181 GSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPS 240
           GSTPPGGFPNSW NGAT+ TSELA+LKNNE+HTWDRG+DDDGNQVWGVK GPYEFKPAP 
Sbjct: 177 GSTPPGGFPNSW-NGATFCTSELAILKNNELHTWDRGYDDDGNQVWGVKEGPYEFKPAPG 235

Query: 241 SSYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           SS +DMFSPLNFPP   +EKRIEGSFVLQE
Sbjct: 236 SSVNDMFSPLNFPPPLSMEKRIEGSFVLQE 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122242|ref|XP_002318786.1| predicted protein [Populus trichocarpa] gi|222859459|gb|EEE97006.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/268 (82%), Positives = 241/268 (89%), Gaps = 3/268 (1%)

Query: 2   GPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKF 61
           G  SD  S+ NG WG RA+GL +K+ VLIGG +L+KRLTKS TRWDHA+IV  SL+GEKF
Sbjct: 8   GSGSDPTSDSNG-WG-RARGLALKSLVLIGGVLLVKRLTKSTTRWDHAKIVTQSLTGEKF 65

Query: 62  SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
           SKEQASRDPDN+FNIRMLTCPAAEMVDGSK+LY EQAFWRTPQKPFRQRFYMVKPCPKEL
Sbjct: 66  SKEQASRDPDNYFNIRMLTCPAAEMVDGSKVLYFEQAFWRTPQKPFRQRFYMVKPCPKEL 125

Query: 122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEG 181
           KCDVEV SYAIR+ EEYKNFCDR +DQRPLPEEVIGDI EHLTTIHL+RCDRGKRCLYEG
Sbjct: 126 KCDVEVGSYAIRDAEEYKNFCDRSKDQRPLPEEVIGDIAEHLTTIHLKRCDRGKRCLYEG 185

Query: 182 STPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSS 241
           S PPGGFPNSW NGATY TSELA+LKNNEIHTWDRG+DD GNQVWGVK GPYEFKPAP+S
Sbjct: 186 SNPPGGFPNSW-NGATYCTSELAILKNNEIHTWDRGYDDGGNQVWGVKEGPYEFKPAPAS 244

Query: 242 SYSDMFSPLNFPPQQFLEKRIEGSFVLQ 269
           S S++FSPLN PP Q +EKRIEGSFVLQ
Sbjct: 245 SVSELFSPLNLPPLQSMEKRIEGSFVLQ 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106609|dbj|BAJ53116.1| JHL07K02.6 [Jatropha curcas]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/270 (82%), Positives = 240/270 (88%), Gaps = 5/270 (1%)

Query: 1   MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEK 60
           MG  SDS SN   GW  RA+GL VK  VLIGGA+L+KRLTKS TRWDH RIV  SLSGEK
Sbjct: 1   MGSGSDSESN---GWS-RARGLVVKTLVLIGGAILVKRLTKSTTRWDHTRIVTQSLSGEK 56

Query: 61  FSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKE 120
           FS+EQASRDPDN+FNIRMLTCPAA+MVDGSK+LY E+AF RTPQKPFRQRFYMVKPCPKE
Sbjct: 57  FSREQASRDPDNYFNIRMLTCPAADMVDGSKVLYFERAFCRTPQKPFRQRFYMVKPCPKE 116

Query: 121 LKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYE 180
           LKCDVEVSSYAIR+ EEYKNFCDRP+DQRPLPEEVIGDI EHLTTI+L+RCDRGKRCLYE
Sbjct: 117 LKCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIAEHLTTIYLKRCDRGKRCLYE 176

Query: 181 GSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPS 240
           GSTPPGGFPNSW NGAT+ TSELA+LKNNEIHTWDRG+DDDGNQVWGVK GPYEFKPAP+
Sbjct: 177 GSTPPGGFPNSW-NGATHCTSELAILKNNEIHTWDRGYDDDGNQVWGVKDGPYEFKPAPA 235

Query: 241 SSYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           SS + M   LNFPP   +EKRIEGSFVLQE
Sbjct: 236 SSVNGMLPALNFPPPHSMEKRIEGSFVLQE 265

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516466|ref|XP_003526915.1| PREDICTED: chromophore lyase CpcT/CpeT 3-like [Glycine max]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/270 (79%), Positives = 243/270 (90%), Gaps = 4/270 (1%)

Query: 1   MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEK 60
           MG DSDS +N   GW  RA+GL +K  +L GGA+L+KRL KS TRWDHA  V+ SL+GEK
Sbjct: 1   MGTDSDSDAN---GWN-RARGLALKTLLLFGGALLVKRLRKSTTRWDHAHFVSKSLAGEK 56

Query: 61  FSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKE 120
           +SKEQASRDPDN+FNIRMLTCPAAE+VDGSK+LY EQAFWRTPQKPFRQR +MVKPCPKE
Sbjct: 57  YSKEQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKE 116

Query: 121 LKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYE 180
           LKCDVE+S+YAIR++EEYKNFCDRPRDQRP PEEVIGDI EHLTT+HL+RC RGKRCLY+
Sbjct: 117 LKCDVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYK 176

Query: 181 GSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPS 240
           GSTPPGGFPNSWQNGAT+ TSELA+LKNN+IHTWDRG+DDDGNQVWG K GPYEFKPAP+
Sbjct: 177 GSTPPGGFPNSWQNGATHCTSELAILKNNDIHTWDRGYDDDGNQVWGQKEGPYEFKPAPT 236

Query: 241 SSYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           SS+SDMFSPLNFPP   +E+RIEGSFVLQE
Sbjct: 237 SSFSDMFSPLNFPPPPSMERRIEGSFVLQE 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456513|ref|XP_002284706.1| PREDICTED: chromophore lyase CpcT/CpeT 3 [Vitis vinifera] gi|147860848|emb|CAN83158.1| hypothetical protein VITISV_022553 [Vitis vinifera] gi|297734523|emb|CBI15770.3| unnamed protein product [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/270 (81%), Positives = 242/270 (89%), Gaps = 3/270 (1%)

Query: 1   MGPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEK 60
           MG  SDS S  NG WG RA+G+ VKAAVLIGGA+LLKRLTKS TRWDHAR V+ SLSGEK
Sbjct: 1   MGTGSDSESEGNG-WG-RARGILVKAAVLIGGAILLKRLTKSTTRWDHARFVSHSLSGEK 58

Query: 61  FSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKE 120
           FS EQASRDPDN+FN RM+TCPAAE+VDGS++LY EQAFWRTP KPFRQRFYMVKPCPKE
Sbjct: 59  FSMEQASRDPDNYFNFRMVTCPAAELVDGSRVLYFEQAFWRTPSKPFRQRFYMVKPCPKE 118

Query: 121 LKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYE 180
           +KCDVE+SSYAIR+VEEYKNFCDR + QRPLPEEVIGDI EHLTTI+L+RC+RGKRCLYE
Sbjct: 119 MKCDVELSSYAIRDVEEYKNFCDRSKAQRPLPEEVIGDIAEHLTTIYLKRCERGKRCLYE 178

Query: 181 GSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPS 240
           GSTP GGFPNSW +GATY TSELAVLKNNEIH WDRG+DD+GNQVWGVK GPYEFKPAP+
Sbjct: 179 GSTPSGGFPNSW-SGATYCTSELAVLKNNEIHIWDRGYDDEGNQVWGVKEGPYEFKPAPA 237

Query: 241 SSYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           SS +DMFSPLNF P   +EKRI+GSFVLQE
Sbjct: 238 SSSNDMFSPLNFAPPLPMEKRIDGSFVLQE 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508878|ref|XP_003523180.1| PREDICTED: chromophore lyase CpcT/CpeT 3-like [Glycine max]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/267 (80%), Positives = 241/267 (90%), Gaps = 5/267 (1%)

Query: 4   DSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSK 63
           DSDS SN   GW  RA+GL +K  +LIGGA+L+KRL KS TRWDHA  V++SL+GEK+SK
Sbjct: 5   DSDSESN---GWN-RARGLALKTLLLIGGALLVKRLRKSTTRWDHAHFVSNSLTGEKYSK 60

Query: 64  EQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKC 123
           EQASRDPDN+FNIRMLTCPAAE+VDGSK+LY EQAFWRTPQKPFRQR +MVKPCPKELKC
Sbjct: 61  EQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKELKC 120

Query: 124 DVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGST 183
           DVE+S+YAIR++EEYKNFCDRPRDQRP PEEVIGDI EHLTT+HL+RC RGKRCLYEGST
Sbjct: 121 DVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYEGST 180

Query: 184 PPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSY 243
           PPGGFPNSW NGATY TSELA+LKNNEIHTWDRG+DD GNQVWG K GPYEFKPAP+SS+
Sbjct: 181 PPGGFPNSW-NGATYCTSELAILKNNEIHTWDRGYDDGGNQVWGQKEGPYEFKPAPTSSF 239

Query: 244 SDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           +DMFSPLNFPP   +E+RIEGSFVLQE
Sbjct: 240 NDMFSPLNFPPPPSMERRIEGSFVLQE 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500552|gb|AFK38342.1| unknown [Lotus japonicus]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 232/253 (91%), Gaps = 1/253 (0%)

Query: 18  RAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKFSKEQASRDPDNFFNIR 77
           RA+GL VK  +LIGGA+L+KRL KS TRWDHAR V++SL+GEK+SKEQASRDP+N+FNIR
Sbjct: 14  RARGLAVKTLLLIGGALLVKRLRKSTTRWDHARFVSNSLTGEKYSKEQASRDPENYFNIR 73

Query: 78  MLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEE 137
           MLTCPAAE+VDGSK+LY EQAFWR+PQKPFRQRFY+VKP PKELKCDVE+S+YAIR++EE
Sbjct: 74  MLTCPAAELVDGSKVLYFEQAFWRSPQKPFRQRFYVVKPYPKELKCDVELSTYAIRDMEE 133

Query: 138 YKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEGSTPPGGFPNSWQNGAT 197
           YKNFCDRP+DQRP PEEVIGDI EHLTTIHL+RC RGKRC YEGSTPPGGFPNSW NGAT
Sbjct: 134 YKNFCDRPKDQRPQPEEVIGDIAEHLTTIHLKRCPRGKRCSYEGSTPPGGFPNSW-NGAT 192

Query: 198 YSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSSSYSDMFSPLNFPPQQF 257
           Y TSELAVLKNNEIHTWDRGFDDDGNQVWG K GPYEFKPAP+S ++DM SPLNFPP   
Sbjct: 193 YCTSELAVLKNNEIHTWDRGFDDDGNQVWGQKDGPYEFKPAPTSCFNDMLSPLNFPPPPS 252

Query: 258 LEKRIEGSFVLQE 270
           +++RIEGSF+LQ+
Sbjct: 253 MDRRIEGSFILQD 265

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241343|ref|NP_199915.1| protein crumpled leaf [Arabidopsis thaliana] gi|13877867|gb|AAK44011.1|AF370196_1 unknown protein [Arabidopsis thaliana] gi|9758249|dbj|BAB08748.1| unnamed protein product [Arabidopsis thaliana] gi|21281135|gb|AAM44980.1| unknown protein [Arabidopsis thaliana] gi|45504116|dbj|BAD12566.1| CRUMPLED LEAF [Arabidopsis thaliana] gi|332008639|gb|AED96022.1| protein crumpled leaf [Arabidopsis thaliana]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/269 (76%), Positives = 233/269 (86%), Gaps = 5/269 (1%)

Query: 2   GPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKF 61
           G D +S+SN   GW  RA+GL VK  VLIGGA+L+KRLTKS TR DHAR+V+ SL+GEKF
Sbjct: 6   GSDPESSSN---GWS-RARGLVVKTLVLIGGALLIKRLTKSTTRRDHARVVSRSLTGEKF 61

Query: 62  SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
           ++EQASRDPDN+FNIRML+CPAAEMVDGS++LYLEQAFWRTPQKPFRQR YMVKPCPKEL
Sbjct: 62  TREQASRDPDNYFNIRMLSCPAAEMVDGSEVLYLEQAFWRTPQKPFRQRLYMVKPCPKEL 121

Query: 122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEG 181
           KCDVEVSSYAIR+ EEYKNFCDRP+DQRPLPEEVIGDIGEHLTTIHL  CDRGKRCLYEG
Sbjct: 122 KCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIGEHLTTIHLNCCDRGKRCLYEG 181

Query: 182 STPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSS 241
           ST PGGFPNSW NGA+Y TS+LAVLKNNEIH WDRGFD++ NQVWG K GPYEFKPA SS
Sbjct: 182 STSPGGFPNSW-NGASYCTSDLAVLKNNEIHLWDRGFDENRNQVWGPKEGPYEFKPATSS 240

Query: 242 SYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           S ++  S LN   Q  ++K I+GS +LQ+
Sbjct: 241 SINENLSALNILYQSSIDKPIQGSLILQD 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795903|ref|XP_002865836.1| hypothetical protein ARALYDRAFT_918134 [Arabidopsis lyrata subsp. lyrata] gi|297311671|gb|EFH42095.1| hypothetical protein ARALYDRAFT_918134 [Arabidopsis lyrata subsp. lyrata]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/269 (76%), Positives = 233/269 (86%), Gaps = 5/269 (1%)

Query: 2   GPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKF 61
           G D +S+SN   GW  RA+GL VK  VLIGGA+L+KRLTKS TR DHAR+V+ SL+GEKF
Sbjct: 6   GSDPESSSN---GWS-RARGLVVKTLVLIGGALLIKRLTKSTTRRDHARVVSRSLTGEKF 61

Query: 62  SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
           ++EQASRDP+N+FNIRML+CPAAEMVDGS++LYLEQAFWRTPQKPFRQR YMVKPCPKEL
Sbjct: 62  TREQASRDPENYFNIRMLSCPAAEMVDGSEVLYLEQAFWRTPQKPFRQRLYMVKPCPKEL 121

Query: 122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEG 181
           KCDVEVSSYAIR+ EEYKNFCDRP+DQRPLPEEVIGDIGEHLTTIHL  CDRGKRCLYEG
Sbjct: 122 KCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIGEHLTTIHLNCCDRGKRCLYEG 181

Query: 182 STPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSS 241
           ST PGGFPNSW NGA+Y TS+LAVLKNNEIH WDRGFD++ NQVWG K GPYEFKPA SS
Sbjct: 182 STSPGGFPNSW-NGASYCTSDLAVLKNNEIHLWDRGFDENRNQVWGPKEGPYEFKPATSS 240

Query: 242 SYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           S ++  S LN   Q  ++K I+GS +LQ+
Sbjct: 241 SINENLSALNILYQSSIDKPIQGSLILQD 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554618|gb|AAM63635.1| unknown [Arabidopsis thaliana]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/269 (76%), Positives = 232/269 (86%), Gaps = 5/269 (1%)

Query: 2   GPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKF 61
           G D +S+SN   GW  RA+GL VK  VLIGGA+L+KRLTKS TR DHAR+V+ SL+GEKF
Sbjct: 6   GSDPESSSN---GWS-RARGLVVKTLVLIGGALLIKRLTKSTTRRDHARVVSRSLTGEKF 61

Query: 62  SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
           ++EQASRDPDN+FNIRML+CPAAEMVDGS++LYLEQAFWRTPQKPFRQR YMVKPCPKEL
Sbjct: 62  TREQASRDPDNYFNIRMLSCPAAEMVDGSEVLYLEQAFWRTPQKPFRQRLYMVKPCPKEL 121

Query: 122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEG 181
           KCDVEVSSYAIR+ EEYK FCDRP+DQRPLPEEVIGDIGEHLTTIHL  CDRGKRCLYEG
Sbjct: 122 KCDVEVSSYAIRDAEEYKXFCDRPKDQRPLPEEVIGDIGEHLTTIHLNCCDRGKRCLYEG 181

Query: 182 STPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSS 241
           ST PGGFPNSW NGA+Y TS+LAVLKNNEIH WDRGFD++ NQVWG K GPYEFKPA SS
Sbjct: 182 STSPGGFPNSW-NGASYCTSDLAVLKNNEIHLWDRGFDENRNQVWGPKEGPYEFKPATSS 240

Query: 242 SYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
           S ++  S LN   Q  ++K I+GS +LQ+
Sbjct: 241 SINENLSALNILYQSSIDKPIQGSLILQD 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2157398	269	CRL "AT5G51020" [Arabidopsis t	0.977	0.981	0.765	2e-111

TAIR|locus:2157398 CRL "AT5G51020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 206/269 (76%), Positives = 233/269 (86%)

Query:     2 GPDSDSASNPNGGWGGRAQGLFVKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSGEKF 61
             G D +S+SN   GW  RA+GL VK  VLIGGA+L+KRLTKS TR DHAR+V+ SL+GEKF
Sbjct:     6 GSDPESSSN---GWS-RARGLVVKTLVLIGGALLIKRLTKSTTRRDHARVVSRSLTGEKF 61

Query:    62 SKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKEL 121
             ++EQASRDPDN+FNIRML+CPAAEMVDGS++LYLEQAFWRTPQKPFRQR YMVKPCPKEL
Sbjct:    62 TREQASRDPDNYFNIRMLSCPAAEMVDGSEVLYLEQAFWRTPQKPFRQRLYMVKPCPKEL 121

Query:   122 KCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRCDRGKRCLYEG 181
             KCDVEVSSYAIR+ EEYKNFCDRP+DQRPLPEEVIGDIGEHLTTIHL  CDRGKRCLYEG
Sbjct:   122 KCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIGEHLTTIHLNCCDRGKRCLYEG 181

Query:   182 STPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFKPAPSS 241
             ST PGGFPNSW NGA+Y TS+LAVLKNNEIH WDRGFD++ NQVWG K GPYEFKPA SS
Sbjct:   182 STSPGGFPNSW-NGASYCTSDLAVLKNNEIHLWDRGFDENRNQVWGPKEGPYEFKPATSS 240

Query:   242 SYSDMFSPLNFPPQQFLEKRIEGSFVLQE 270
             S ++  S LN   Q  ++K I+GS +LQ+
Sbjct:   241 SINENLSALNILYQSSIDKPIQGSLILQD 269


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       270   0.00097  114 3  11 22  0.37    34
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  228 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.44u 0.12s 22.56t   Elapsed:  00:00:02
  Total cpu time:  22.44u 0.12s 22.56t   Elapsed:  00:00:02
  Start:  Fri May 10 21:21:15 2013   End:  Fri May 10 21:21:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0017009 "protein-phycocyanobilin linkage" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0043572 "plastid fission" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0010020 "chloroplast fission" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XII0400	hypothetical protein (274 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_IX0405	hypothetical protein (350 aa)				•			•		0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam06206	180	pfam06206, CpeT, CpeT/CpcT family (DUF1001)	6e-58

>gnl|CDD|218938 pfam06206, CpeT, CpeT/CpcT family (DUF1001)

 Score =  182 bits (465), Expect = 6e-58
 Identities = 67/188 (35%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 52  VADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRF 111
            A  L+GE  ++EQA  +P  F +IR+   P   +V G   LY EQA+   P KP+RQR 
Sbjct: 3   FARWLAGEFSNQEQAQENPPLFAHIRIRFRPLPWLVFGGIGLYSEQAYDYDPWKPYRQRV 62

Query: 112 YMVKPCPKELKCDVEVSSYAIREVEEYKNFCDRPRDQRPLPEEVIGDIGEHLTTIHLRRC 171
             + P P   +  +EV +YA+++ E +      P   R L  E +  +    T I   + 
Sbjct: 63  LRLIPSP---EGGIEVENYALKDPERFAGAGRDPELLRSLTPEDLELL-PGCTMIFKEQG 118

Query: 172 DRGKRCLYEGSTPPG-GFPNSWQNGATYSTSELAVLKNNEIHTWDRGFD-DDGNQVWGVK 229
           D      + GS  PG          ATY  SE  + K NE  + DRGFD + G QVWG K
Sbjct: 119 D-----GFRGSVEPGKKCLVPRDGKATYLVSEFELTK-NEFISRDRGFDPETGEQVWGSK 172

Query: 230 AGPYEFKP 237
           AGP+ FK 
Sbjct: 173 AGPFRFKR 180

This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PF06206	179	CpeT: CpeT/CpcT family (DUF1001); InterPro: IPR010	100.0

>PF06206 CpeT: CpeT/CpcT family (DUF1001); InterPro: IPR010404 This family consists of proteins of unknown function

Probab=100.00  E-value=6.9e-62  Score=423.87  Aligned_cols=173  Identities=36%  Similarity=0.598  Sum_probs=162.0

Q ss_pred             HHHHHhccccCCHHHHhhCCCCcceeEEEEeeCccccCCceeEEEEEeccCCCCCCceeeeEEEEeCCCCCcceEEEEee
Q 047194           51 IVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSY  130 (270)
Q Consensus        51 ~la~~LaGefsN~eQA~~nP~~fahIrv~~rPL~~~~~~g~~lY~EQay~~~p~~PYRQRv~rl~~~~d~~~~~I~venY  130 (270)
                      +|++||+|+|||++||++||++|+||+|+||||++..+++++||+||||+++|++|||||||||++++++   .|+++||
T Consensus         1 ~l~~~L~G~fsN~~QA~~~P~~~~~I~i~~rpl~~~~~~~~~~y~EQay~~~p~~PYRqri~~~~~~~~~---~i~~~nY   77 (179)
T PF06206_consen    1 TLASWLAGEFSNQEQAQENPPWFAHIRIWFRPLPWFFFDGIGFYSEQAYDYDPDKPYRQRIHRIVPVPDG---SIEVENY   77 (179)
T ss_pred             ChHHhceeccCCHHHHhhCCcccceEEEEEEECCcccCCCcEEEEEEEecCCCCCCcEeeEEEEEecCCC---eEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999654   7999999


Q ss_pred             eecchhhhccccCCCCCCCCChhhhhhhcc-ccccccccCCCcCC---CCccEEeeCCCCCcccccC-CCeeEEEEEEEE
Q 047194          131 AIREVEEYKNFCDRPRDQRPLPEEVIGDIG-EHLTTIHLRRCDRG---KRCLYEGSTPPGGFPNSWQ-NGATYSTSELAV  205 (270)
Q Consensus       131 ~lkd~~~f~Ga~~~p~~~r~~~~~ll~~lt-d~L~~~~l~gC~~~---~~~~f~G~vePG~~c~~~~-g~~tYL~Se~el  205 (270)
                      +|+|+++|+|||++|        ++|+.|+ ++|+.  ++||+|.   ++..|+|+++||++|.+.+ |+.|||+|+|+|
T Consensus        78 ~l~d~~~~~ga~~~p--------~~l~~l~~~~L~~--~~gC~~~~~~~~~~f~G~~~pg~~C~~~~~G~~tyl~s~~~l  147 (179)
T PF06206_consen   78 KLKDPERFAGAGRDP--------ELLKSLTPEDLEL--LPGCDMIFTRQGEGFHGSVEPGKRCLVNRDGKATYLVSEFEL  147 (179)
T ss_pred             ccCCHHHHCCcccCh--------hHhccCCHHHhhc--cCCCeEEEEEcCCeeEEEcCCCCcceEEcCCcEEEEEEEEEE
Confidence            999999999999999        6788888 89965  8999986   5568999999999888865 779999999999


Q ss_pred             eeCccEEEeeeecCCC-CCceecCCCCCceEEe
Q 047194          206 LKNNEIHTWDRGFDDD-GNQVWGVKAGPYEFKP  237 (270)
Q Consensus       206 ~~~~~~~S~DRG~D~e-geqVWGS~~Gpf~F~r  237 (270)
                      +++ +|+|+||||||+ |++||||++|||+|+|
T Consensus       148 ~~~-~~~s~DrG~Dp~t~~~vWGs~~Gp~~f~k  179 (179)
T PF06206_consen  148 TEN-ELISWDRGYDPETGEQVWGSEAGPYRFKK  179 (179)
T ss_pred             cCC-EEEEEEeeecCCCCCEeecCCCCceeecC
Confidence            988 699999999988 7999999999999997

These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the N-terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. This suggests that this protein may be involved in some aspect of a photosynthetic lifestyle.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 23/133 (17%)

Query: 48  HARIVADSLSGEKFSKEQASRDP-DN-FFN-I--RMLTCPAAEMVDGSKLLYLEQAFWRT 102
           H  IV      + F  +       D  F++ I   +      E +   ++++L+  F   
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--F--- 500

Query: 103 PQKPFRQRFYMVKPCPKELKCDVEVSSYA-IREVEEYKNFCDRPRDQRPLPEEVIGDIGE 161
                  RF   K        +   S    +++++ YK +     D  P  E ++  I +
Sbjct: 501 -------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVNAILD 550

Query: 162 HLTTI--HLRRCD 172
            L  I  +L    
Sbjct: 551 FLPKIEENLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00