Citrus Sinensis ID: 047202
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 735 | 2.2.26 [Sep-21-2011] | |||||||
| A3KMI0 | 1362 | ATP-dependent RNA helicas | N/A | no | 0.914 | 0.493 | 0.400 | 1e-140 | |
| Q6P158 | 1386 | Putative ATP-dependent RN | yes | no | 0.927 | 0.492 | 0.394 | 1e-139 | |
| Q6PGC1 | 1365 | ATP-dependent RNA helicas | yes | no | 0.904 | 0.487 | 0.383 | 1e-137 | |
| Q7Z478 | 1369 | ATP-dependent RNA helicas | no | no | 0.908 | 0.487 | 0.379 | 1e-137 | |
| Q6P5D3 | 1388 | Putative ATP-dependent RN | no | no | 0.929 | 0.492 | 0.392 | 1e-136 | |
| Q8VHK9 | 1001 | Probable ATP-dependent RN | no | no | 0.873 | 0.641 | 0.390 | 1e-132 | |
| Q9H2U1 | 1008 | Probable ATP-dependent RN | no | no | 0.903 | 0.658 | 0.385 | 1e-132 | |
| P24785 | 1293 | Dosage compensation regul | no | no | 0.851 | 0.484 | 0.347 | 2e-99 | |
| Q28141 | 1287 | ATP-dependent RNA helicas | no | no | 0.831 | 0.474 | 0.316 | 7e-96 | |
| Q08211 | 1270 | ATP-dependent RNA helicas | no | no | 0.831 | 0.481 | 0.316 | 2e-95 |
| >sp|A3KMI0|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1 | Back alignment and function desciption |
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Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 295/737 (40%), Positives = 435/737 (59%), Gaps = 65/737 (8%)
Query: 6 LQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNL 65
LQ D L ++H+IVDEVHER++ DFLLI+L+++L K+S L ++LMSATVD
Sbjct: 681 LQEDSMLKNISHIIVDEVHERTVQSDFLLIILREILHKRS-----DLHLVLMSATVDCEK 735
Query: 66 FSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRG 125
FS YF CP+I GRT PV + LEDV E+ + L DS ++ +
Sbjct: 736 FSSYFTHCPIIRISGRTFPVEVFHLEDVVEATGFVLEQDSEYCQKFLEDEE--------- 786
Query: 126 KKNLVLSGWGDDSLLSEEYINPYYDP-----SDYGSYSEQTRQNLKRLNEDVIDYDLLED 180
+ L ++G G S +E+I + Y YS QTR + +N + I+ DL+ +
Sbjct: 787 EITLSVTGKGGSSKKYQEFIPAQSGTGLDLGARYQRYSSQTRHAVLYMNPNKINLDLILE 846
Query: 181 LVCHVDETCG----EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVD 236
L+ +D + EGA+L+FLPG+A+I L D L++ RF L+ALHS ++S D
Sbjct: 847 LLVFLDISPEYRNVEGAVLIFLPGLADIQQLYDILSSDKRFHDRRRYKLIALHSILSSQD 906
Query: 237 QKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWIS 296
Q + F+ PP RK+++ATNIAET ITI DVV+V D GR KENRY+ ++SS+VE +IS
Sbjct: 907 QAEAFILPPAGTRKIVLATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFIS 966
Query: 297 QANARQRRGRAGRVKPGICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRI 356
+A+A QR+GRAGRV+ G C+ LYTR R+E M Y VPE+ R+PL ELCL I LG
Sbjct: 967 KASALQRQGRAGRVRNGYCFRLYTRERFESFME-YSVPEILRVPLEELCLHIMKCDLGSP 1025
Query: 357 KIFLSKALEPPKEEAITTAISVLYEVGAIE-GDEELTPLGHHLAKLPVDVLIGKMMLFGG 415
+ FLSKAL+PP+ + I+ A+S+L ++GA E +LTPLG HLA LPV+V IGKM++FG
Sbjct: 1026 EDFLSKALDPPQLQVISNAMSLLRKIGACELSQPKLTPLGQHLAALPVNVKIGKMLIFGA 1085
Query: 416 IFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLV 475
IFGCL + +++A ++ KSPF+ P EK +RA LA S+ + SDH+
Sbjct: 1086 IFGCLDAVATLAATMTEKSPFVTPIGEK---DRADLA----------KSSMAVANSDHVT 1132
Query: 476 LMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKN 535
+ AY W K + G A +C K FL+ + I D++ + L+ G P
Sbjct: 1133 IFRAYLGW-KAIRPEGYAAEMSYCRKNFLNRKALLTIEDVKQELIRLVRAAGF-ECPRSV 1190
Query: 536 QTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRK 595
+ G S M + A +S++KAIL AGLY NV G L K
Sbjct: 1191 EANGLS-----------SAMKALSAEETSLLKAILTAGLYDNV--------GKIL--FTK 1229
Query: 596 SSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPF 655
S + K + + + +HPSS+N L+ + +L++ EKV+ +KVFLR+TT++SPF
Sbjct: 1230 SVDITEKLACIVETAQGKAQVHPSSVNRDLQIYG--WLLYQEKVKYSKVFLRETTLISPF 1287
Query: 656 SILLFGGSINVQHQTGQVTIDGWLKVTAPAQTAVLFKELRLTLHSILRQMIRNPQNSTIA 715
+LLFGG I VQH+ +T+D W+ AP + AV+FKELR+ + S+L+Q + NP+ S
Sbjct: 1288 PVLLFGGDIAVQHRERLLTVDDWIHFQAPVKIAVIFKELRILIESVLKQKLENPKMSL-- 1345
Query: 716 NNEVVKSMIQLLLEEDK 732
++++ ++I+ L++ ++
Sbjct: 1346 KDDMILNIIKELIKTER 1362
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ATP-binding RNA helicase involved in translation initiation. Required for efficient initiation on mammalian mRNAs with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Xenopus laevis (taxid: 8355) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8VHK9|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 | Back alignment and function description |
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| >sp|P24785|MLE_DROME Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=2 SV=2 | Back alignment and function description |
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| >sp|Q28141|DHX9_BOVIN ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 735 | ||||||
| 225448150 | 1458 | PREDICTED: ATP-dependent RNA helicase DH | 0.993 | 0.500 | 0.801 | 0.0 | |
| 255576211 | 1509 | ATP-dependent RNA helicase, putative [Ri | 0.987 | 0.481 | 0.768 | 0.0 | |
| 297840689 | 1458 | helicase domain-containing protein [Arab | 0.990 | 0.499 | 0.752 | 0.0 | |
| 30696202 | 1459 | helicase associated domain-containing pr | 0.990 | 0.498 | 0.751 | 0.0 | |
| 12321257 | 1453 | hypothetical protein [Arabidopsis thalia | 0.982 | 0.496 | 0.75 | 0.0 | |
| 356564424 | 1528 | PREDICTED: ATP-dependent RNA helicase DH | 0.986 | 0.474 | 0.740 | 0.0 | |
| 449457087 | 1642 | PREDICTED: ATP-dependent RNA helicase Dh | 0.987 | 0.442 | 0.758 | 0.0 | |
| 68611225 | 1439 | OSJNBa0084A10.14 [Oryza sativa Japonica | 0.991 | 0.506 | 0.657 | 0.0 | |
| 125548350 | 1439 | hypothetical protein OsI_15944 [Oryza sa | 0.991 | 0.506 | 0.657 | 0.0 | |
| 357167590 | 1418 | PREDICTED: ATP-dependent RNA helicase Dh | 0.991 | 0.514 | 0.660 | 0.0 |
| >gi|225448150|ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera] gi|297739540|emb|CBI29722.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/732 (80%), Positives = 658/732 (89%), Gaps = 2/732 (0%)
Query: 6 LQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNL 65
L GDKNL+G+THVIVDEVHERSLLGDFLLIVLK+L+EKQS TPKLKVILMSATVDSNL
Sbjct: 727 LAGDKNLSGITHVIVDEVHERSLLGDFLLIVLKNLIEKQSTDSTPKLKVILMSATVDSNL 786
Query: 66 FSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEAS--SKSGPVNNR 123
FSRYFG CPVITA GRTHPV+TYFLED+YESI+YRLA DS A+IRYE S K+ VNNR
Sbjct: 787 FSRYFGGCPVITAVGRTHPVSTYFLEDIYESIDYRLASDSPASIRYETSIKQKTSAVNNR 846
Query: 124 RGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQNLKRLNEDVIDYDLLEDLVC 183
RGK+NLVLS WGDDS+LSEE INPYY P+ Y SYSE+T+QNLKRLNEDVIDYDLLEDLVC
Sbjct: 847 RGKRNLVLSAWGDDSVLSEECINPYYVPNAYQSYSEKTQQNLKRLNEDVIDYDLLEDLVC 906
Query: 184 HVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLR 243
+VDET GAILVFLPGVAEI++LLD+LAASYRF G SSDWLL LHSS+AS DQ+KVFL+
Sbjct: 907 YVDETYPAGAILVFLPGVAEIYMLLDKLAASYRFRGLSSDWLLPLHSSIASDDQRKVFLQ 966
Query: 244 PPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQR 303
PPE IRKVIIATNIAETSITIDDVVYV DCG+HKENRYN QKKLSSMVEDWISQANA+QR
Sbjct: 967 PPENIRKVIIATNIAETSITIDDVVYVIDCGKHKENRYNPQKKLSSMVEDWISQANAKQR 1026
Query: 304 RGRAGRVKPGICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKA 363
RGRAGRVKPGIC+SLYT +R+EKL+RP+QVPEM RMPLVELCLQIKLLSLG IK FLSKA
Sbjct: 1027 RGRAGRVKPGICFSLYTHYRFEKLLRPFQVPEMLRMPLVELCLQIKLLSLGNIKPFLSKA 1086
Query: 364 LEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPI 423
LEPP EEA+T+AISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMML+G IFGCLSPI
Sbjct: 1087 LEPPTEEAMTSAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLYGAIFGCLSPI 1146
Query: 424 LSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKKW 483
LSISAFLSYKSPF+ PKDE+QNVERAKLALLTD+++G SDSND + QSDHLV+MVAYKKW
Sbjct: 1147 LSISAFLSYKSPFLSPKDERQNVERAKLALLTDQVDGASDSNDGARQSDHLVMMVAYKKW 1206
Query: 484 QKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKD 543
++IL ++G KAAQ FC+ YFLSSSVM+MIRDMR+QFG LLADIGLI+LP K Q KKK+
Sbjct: 1207 ERILHEKGAKAAQHFCNSYFLSSSVMHMIRDMRVQFGNLLADIGLISLPKKYQIERKKKE 1266
Query: 544 DLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKA 603
+L+SWFSD SQ FN Y++H SIVKAILCAGLYPNVAATEQG+AG AL N+ +SS SA K
Sbjct: 1267 NLNSWFSDISQPFNTYSHHFSIVKAILCAGLYPNVAATEQGIAGVALGNIIQSSGSATKG 1326
Query: 604 HPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGS 663
PVWYDGRREVHIHPSSIN L +F++PFLVFLEKVETNKVFLRDTTI+SP+SILLFGGS
Sbjct: 1327 RPVWYDGRREVHIHPSSINGNLNAFQYPFLVFLEKVETNKVFLRDTTIISPYSILLFGGS 1386
Query: 664 INVQHQTGQVTIDGWLKVTAPAQTAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSM 723
INVQHQ+G V IDGWLK+ APAQ AVLFKELR+TLHS+L+++IR P+ + + NNEVVKS+
Sbjct: 1387 INVQHQSGMVNIDGWLKLAAPAQIAVLFKELRVTLHSVLKELIRKPEKAIVVNNEVVKSI 1446
Query: 724 IQLLLEEDKPQK 735
I LLLEE+K K
Sbjct: 1447 IHLLLEEEKSPK 1458
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576211|ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297840689|ref|XP_002888226.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334067|gb|EFH64485.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30696202|ref|NP_176103.2| helicase associated domain-containing protein [Arabidopsis thaliana] gi|332195372|gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|12321257|gb|AAG50701.1|AC079604_8 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356564424|ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449457087|ref|XP_004146280.1| PREDICTED: ATP-dependent RNA helicase Dhx29-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|68611225|emb|CAE03039.3| OSJNBa0084A10.14 [Oryza sativa Japonica Group] gi|116309362|emb|CAH66443.1| B0308C03.3 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|125548350|gb|EAY94172.1| hypothetical protein OsI_15944 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|357167590|ref|XP_003581237.1| PREDICTED: ATP-dependent RNA helicase Dhx29-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 735 | ||||||
| TAIR|locus:2196265 | 1459 | AT1G58060 [Arabidopsis thalian | 0.990 | 0.498 | 0.725 | 1.4e-286 | |
| TAIR|locus:2196255 | 1417 | AT1G58050 [Arabidopsis thalian | 0.957 | 0.496 | 0.656 | 7.9e-252 | |
| UNIPROTKB|F1N1A2 | 1382 | DHX57 "Uncharacterized protein | 0.678 | 0.361 | 0.388 | 8.7e-122 | |
| MGI|MGI:2147067 | 1388 | Dhx57 "DEAH (Asp-Glu-Ala-Asp/H | 0.742 | 0.393 | 0.374 | 9.2e-122 | |
| UNIPROTKB|F1M8G5 | 1338 | Dhx57 "Protein Dhx57" [Rattus | 0.744 | 0.408 | 0.381 | 1.3e-121 | |
| UNIPROTKB|F1LSC4 | 1391 | Dhx57 "Protein Dhx57" [Rattus | 0.744 | 0.393 | 0.381 | 4.4e-121 | |
| ZFIN|ZDB-GENE-030131-4078 | 1430 | dhx57 "DEAH (Asp-Glu-Ala-Asp/H | 0.780 | 0.401 | 0.362 | 5.1e-119 | |
| UNIPROTKB|Q6P158 | 1386 | DHX57 "Putative ATP-dependent | 0.929 | 0.492 | 0.381 | 9.8e-119 | |
| UNIPROTKB|E1C9G0 | 1380 | DHX57 "Uncharacterized protein | 0.925 | 0.492 | 0.379 | 2.6e-118 | |
| UNIPROTKB|E2QX71 | 1382 | DHX57 "Uncharacterized protein | 0.925 | 0.492 | 0.374 | 4.2e-118 |
| TAIR|locus:2196265 AT1G58060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2753 (974.2 bits), Expect = 1.4e-286, P = 1.4e-286
Identities = 531/732 (72%), Positives = 613/732 (83%)
Query: 6 LQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTP-KLKVILMSATVDSN 64
L GD+ L VTH+IVDEVHERSLLGDFLLI+LK L+EKQS +T KLKVILMSATVD++
Sbjct: 727 LAGDRTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSRKLKVILMSATVDAD 786
Query: 65 LFSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKS--GPVNN 122
LFSRYFG CPVITA+GRTHPVTT+FLE++YESINY LA DS AA+R + S K G VN+
Sbjct: 787 LFSRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAPDSPAALRSDTSIKDKLGSVND 846
Query: 123 RRGKKNLVLSGWGDDSLLSEEYINXXXXXXXXXXXXEQTRQNLKRLNEDVIDYDLLEDLV 182
RRGKKNLVL+GWGDD LLSE+ +N +QT+QNLKRLNED IDY+LLE+L+
Sbjct: 847 RRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQTQQNLKRLNEDRIDYELLEELI 906
Query: 183 CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFL 242
CH+D+TC EGAIL+FLPGVAEI++LLD LAASYRF GP++DWLL LHSS+AS +Q+KVFL
Sbjct: 907 CHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLLPLHSSIASSEQRKVFL 966
Query: 243 RPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISXXXXXX 302
RPP+ +RKVI ATNIAETSITIDDVVYV D G+HKENRYN QKKLSSMVEDWIS
Sbjct: 967 RPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMVEDWISQANARQ 1026
Query: 303 XXXXXXXVKPGICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSK 362
VKPGIC+SLYTR+R+EKLMRPYQVPEM RMPLVELCLQIKLL LG IK FLS+
Sbjct: 1027 RTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRMPLVELCLQIKLLGLGHIKPFLSR 1086
Query: 363 ALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSP 422
ALEPP E A+T+AIS+L+EVGA+EGDEELTPLGHHLAKLPVDVLIGKM+L+GGIFGCLSP
Sbjct: 1087 ALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHHLAKLPVDVLIGKMLLYGGIFGCLSP 1146
Query: 423 ILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKK 482
ILSI+AFLSYKSPFIYPKDEKQNV+R KLALL+D SD N++ QSDHL++MVAY K
Sbjct: 1147 ILSIAAFLSYKSPFIYPKDEKQNVDRVKLALLSDNGVSSSDLNNNDRQSDHLLMMVAYDK 1206
Query: 483 WQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKK 542
W KIL +RG KAAQ+FC FLSSSVM MIRDMR+QFGTLLADIGLINLP + G+KK
Sbjct: 1207 WVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGTLLADIGLINLPKTGEFSGRKK 1266
Query: 543 DDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAK 602
++LD WFSD +Q FNMY+ +VKAILCAGLYPN+AA ++G+ ++L K N K
Sbjct: 1267 ENLDVWFSDPTQPFNMYSQQPEVVKAILCAGLYPNIAANDKGITETTFNSLTKQGNQT-K 1325
Query: 603 AHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGG 662
++ WYDGRREVHIHPSSINS K+F++PFLVFLEKVETNKV+LRDTTIVSPFSILLFGG
Sbjct: 1326 SYSAWYDGRREVHIHPSSINSNFKAFQNPFLVFLEKVETNKVYLRDTTIVSPFSILLFGG 1385
Query: 663 SINVQHQTGQVTIDGWLKVTAPAQTAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKS 722
SINV HQ+G VTIDGWLKV APAQTAVLFKELRLTLHSIL+ +IR P+ S I +NEVVKS
Sbjct: 1386 SINVHHQSGSVTIDGWLKVAAPAQTAVLFKELRLTLHSILKDLIRKPEKSGIVHNEVVKS 1445
Query: 723 MIQLLLEEDKPQ 734
M+ LL+EE KPQ
Sbjct: 1446 MVHLLIEEGKPQ 1457
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| TAIR|locus:2196255 AT1G58050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N1A2 DHX57 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:2147067 Dhx57 "DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M8G5 Dhx57 "Protein Dhx57" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LSC4 Dhx57 "Protein Dhx57" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-4078 dhx57 "DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6P158 DHX57 "Putative ATP-dependent RNA helicase DHX57" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C9G0 DHX57 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QX71 DHX57 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | scaffold_200743.1 | annotation not avaliable (1458 aa) | ||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 735 | |||
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 2e-93 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 3e-44 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 5e-40 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 1e-33 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 7e-32 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 4e-26 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 1e-25 | |
| pfam07717 | 109 | pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch | 3e-18 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 4e-18 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 5e-16 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 6e-16 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 3e-12 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 3e-12 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 3e-10 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 8e-09 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-06 | |
| PHA02653 | 675 | PHA02653, PHA02653, RNA helicase NPH-II; Provision | 6e-06 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 0.001 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 308 bits (792), Expect = 2e-93
Identities = 139/482 (28%), Positives = 211/482 (43%), Gaps = 46/482 (9%)
Query: 174 DYDLLEDLVCHVDE--TCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSS 231
DY LL+ +V VD G G+ILVFLPG EI + L + G +L L+ +
Sbjct: 240 DYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKA-ELGDDLE--ILPLYGA 296
Query: 232 VASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMV 291
+++ +Q +VF P RKV++ATNIAETS+TI + YV D G KE RY+ + L+ +
Sbjct: 297 LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356
Query: 292 EDWISQANARQRRGRAGRVKPGICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL 351
+ IS+A+A QR GRAGR PGICY LY+ + + +PE+ R L L LQ L
Sbjct: 357 TEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVLQ--LK 413
Query: 352 SLG-RIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKM 410
SLG I L+PP E AI A+++L E+GA++ +LTPLG ++ LP+D + +M
Sbjct: 414 SLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARM 473
Query: 411 MLFGGIFGCLSPILSISAFLSY---KSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDS 467
+L GCL +I++ LS +S F ++ L L N +
Sbjct: 474 LLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKR------LKRRNAA 527
Query: 468 STQSDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQ-FGTLLADI 526
+ DHL+L+ A+ +G C + + + A
Sbjct: 528 DPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALA 587
Query: 527 GLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVA 586
G I +D+ + E ++ L AG N+A +
Sbjct: 588 GRILA-----AAEIDEDEWAAQHLPEHCYSE---PIWDDIRGALAAGRKLNIAQLQLDGR 639
Query: 587 GAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFL 646
V HPSS+ L E ++ + E + T K +L
Sbjct: 640 PYVT-----------------LSDNTPVFAHPSSVRLGLVLLE--WIKYAEFLRTRKGYL 680
Query: 647 RD 648
R+
Sbjct: 681 RE 682
|
Length = 845 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold | Back alignment and domain information |
|---|
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 735 | |||
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.96 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.94 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.91 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.9 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.87 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.84 | |
| PTZ00110 | 545 | helicase; Provisional | 99.84 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.83 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.83 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.83 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.83 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.82 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.82 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.82 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.82 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.82 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.82 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.81 | |
| PF07717 | 114 | OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi | 99.8 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.8 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.8 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.79 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.79 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.78 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.78 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.77 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.77 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.77 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.76 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.75 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.75 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.74 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.74 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 99.73 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.73 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.72 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.72 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.71 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.7 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.69 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.68 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.65 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 99.63 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.62 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.59 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.57 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.56 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.55 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.55 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.52 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.5 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.5 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.49 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.49 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.49 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.48 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.46 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.4 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.4 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.4 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.38 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.37 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.33 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.32 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.31 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.29 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.27 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.27 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.27 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.27 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.26 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.26 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.25 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.24 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.23 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.23 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.18 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.17 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.15 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.15 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.13 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.11 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.1 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.07 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.07 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.06 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.05 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.05 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.04 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.03 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.02 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.01 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.01 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.97 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 98.97 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.89 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 98.87 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 98.64 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 98.57 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 98.56 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 98.53 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.47 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 98.46 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.4 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 98.3 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.19 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 97.96 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.88 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.61 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 97.52 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 97.51 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 97.44 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 97.23 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.22 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 97.12 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 96.93 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 96.91 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 96.76 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 96.63 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 96.4 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 96.4 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 96.16 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 96.12 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 95.82 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 95.57 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 94.86 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 94.78 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 94.76 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 94.71 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 93.98 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 93.62 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 93.39 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 93.25 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 92.46 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 92.05 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 91.83 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 91.41 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 91.2 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 90.62 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 90.38 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 90.24 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 90.13 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 89.44 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 88.85 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 87.11 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 86.72 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 86.58 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 85.35 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 84.0 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 83.83 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 83.79 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 80.72 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 80.13 |
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-133 Score=1146.62 Aligned_cols=641 Identities=51% Similarity=0.815 Sum_probs=569.5
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
.|+|+|++|+.+.++||||+||||||++++||||.++|.++.+| |+|||||||||+|++.|++||++||+++|||
T Consensus 274 vLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~-----p~LkvILMSAT~dae~fs~YF~~~pvi~i~g 348 (924)
T KOG0920|consen 274 VLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN-----PDLKVILMSATLDAELFSDYFGGCPVITIPG 348 (924)
T ss_pred HHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC-----CCceEEEeeeecchHHHHHHhCCCceEeecC
Confidence 37899999999999999999999999999999999999999887 7899999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|+|||.+|||||++.+++|....+++.. +.. .......
T Consensus 349 rtfpV~~~fLEDil~~~~~~~~~~~~~~----------------~~~--------------~~~~~~~------------ 386 (924)
T KOG0920|consen 349 RTFPVKEYFLEDILSKTGYVSEDDSARS----------------GPE--------------RSQLRLA------------ 386 (924)
T ss_pred CCcchHHHHHHHHHHHhccccccccccc----------------ccc--------------cCccccc------------
Confidence 9999999999999999988765443320 000 0000000
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
.++.+ +..+|+++|++++++|++...+|+|||||||++||..+.+.|.....+.+..++.|+||||.|+.+||++|
T Consensus 387 ---~~~~~-~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V 462 (924)
T KOG0920|consen 387 ---RLKLW-EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV 462 (924)
T ss_pred ---cchhc-cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh
Confidence 01112 22389999999999999998899999999999999999999988777776667899999999999999999
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEcee
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYT 320 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t 320 (735)
|.++|+|.||||+||||||||||||||+||||||++|++.|||..++++|...|+|||+|+||+|||||+++|+|||||+
T Consensus 463 F~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~ 542 (924)
T KOG0920|consen 463 FKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYT 542 (924)
T ss_pred cCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhcc
Q 047202 321 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAK 400 (735)
Q Consensus 321 ~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~ 400 (735)
+..|+.++.+|++|||+|+||+++||++|.++++++..||+.+++||+.++|..|+..|..+||++.+++|||||+++++
T Consensus 543 ~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~ 622 (924)
T KOG0920|consen 543 RSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLAS 622 (924)
T ss_pred hhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHh
Confidence 99999988779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHH
Q 047202 401 LPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAY 480 (735)
Q Consensus 401 lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y 480 (735)
||+||++|||+++|++|+|++|+++|||+|+.++||+.|.++++.+++++..+.. +..||||++++||
T Consensus 623 lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~------------~~~SD~la~~~ay 690 (924)
T KOG0920|consen 623 LPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLAL------------DSISDHLAVVRAY 690 (924)
T ss_pred CCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhcc------------CCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988852 2479999999999
Q ss_pred HHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccccccC
Q 047202 481 KKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYA 560 (735)
Q Consensus 481 ~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~s 560 (735)
+.|+++.+. |..++.+||++||||.++|+++.++|.||.+.|.++|+++.+.. .......+|.|+
T Consensus 691 ~~w~~~~~~-~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~--------------~~~~~~~~n~~s 755 (924)
T KOG0920|consen 691 AGWREILRS-GPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISST--------------AALTDSECNHNS 755 (924)
T ss_pred HHHHHHHhc-cchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcc--------------cccCchhhhhcC
Confidence 999987554 35678999999999999999999999999999999999987542 112245788999
Q ss_pred CcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEeecc
Q 047202 561 NHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVE 640 (735)
Q Consensus 561 ~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e~~~ 640 (735)
.++++++++||||||||++..... .+ ..+....++.+.+.|+|||+|+|+....+..+|++|+|+++
T Consensus 756 ~~~~~iravl~a~lyP~i~~~~~~---------~~----~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~ 822 (924)
T KOG0920|consen 756 QNPELVRAVLCAGLYPNIAFVRRM---------EP----KSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVK 822 (924)
T ss_pred CCHHHHHHHHhccCCCceeeeecc---------cC----CcCcceeecCCceeEEEecchhhccccccCCcceEEeeecc
Confidence 999999999999999999986531 00 00111222333458999999999988888888999999999
Q ss_pred cCc-ceeecCCCcChHHHHHhcCcee-eecccCeEEE---cCeEEEEechhHHHHHHHHHHHHHHHHHHHHhCCCCCC--
Q 047202 641 TNK-VFLRDTTIVSPFSILLFGGSIN-VQHQTGQVTI---DGWLKVTAPAQTAVLFKELRLTLHSILRQMIRNPQNST-- 713 (735)
Q Consensus 641 t~k-~~lr~~T~V~p~~llLfgg~l~-~~~~~~~l~v---D~Wi~~~~~~~~~~ll~~LR~~ld~ll~~~~~~P~~~~-- 713 (735)
|++ +|+|+||+|++++++||||... +....+.+.+ |+|+.|.++++++.++++||..+|.+|.+++++|....
T Consensus 823 t~~~~~~rd~T~v~~~~~llfgg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~~~p~~~~~~ 902 (924)
T KOG0920|consen 823 STRLVSLRDTTSVSSSALLLFGGGISTVRMKSGSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKIRSPCASLPD 902 (924)
T ss_pred cCCcceeeecCCCCcHHheeecCCceeecCCCCccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 999 9999999999999999999654 6666666665 99999999999999999999999999999999999665
Q ss_pred --CCchHHHHHHHHHHhhcCC
Q 047202 714 --IANNEVVKSMIQLLLEEDK 732 (735)
Q Consensus 714 --~~~~~~~~~i~~ll~~~~~ 732 (735)
..+.+....+..++..++.
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~ 923 (924)
T KOG0920|consen 903 SSGKGSESPSLIANLLVGEKK 923 (924)
T ss_pred cccccccchhhhhhhhhhhcc
Confidence 3567777888888877653
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 735 | ||||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 3e-30 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 3e-30 | ||
| 3i4u_A | 270 | Crystal Structure Analysis Of A Helicase Associated | 9e-14 | ||
| 3llm_A | 235 | Crystal Structure Analysis Of A Rna Helicase Length | 2e-12 |
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
| >pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 | Back alignment and structure |
| >pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 310 bits (795), Expect = 1e-94
Identities = 126/484 (26%), Positives = 212/484 (43%), Gaps = 79/484 (16%)
Query: 184 HVDETCGEGAILVFLPGVAEIH----ILLDRLAASYRFGGPSSDWLLALHSSVASVDQKK 239
H E G IL+FL G EI + R G + L+ S+ Q++
Sbjct: 298 HATE--EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQR 355
Query: 240 VFLRPPEKI-----RKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDW 294
+F PE RKV+I+TNIAETS+TID +VYV D G K+ YN + ++ S++
Sbjct: 356 IFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSP 415
Query: 295 ISQANARQRRGRAGRVKPGICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLG 354
IS+A+A+QR GRAGR +PG C+ LYT ++K + PE+ R L L++K L +
Sbjct: 416 ISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGID 475
Query: 355 RIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFG 414
+ F ++PP E + A+ L + ++ + LTPLG ++ P+D ++ M++
Sbjct: 476 DLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGS 533
Query: 415 GIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHL 474
F C IL+I A LS + FI P +K+ + AK + DH+
Sbjct: 534 FEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIF-------------AHPDGDHI 580
Query: 475 VLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNK 534
L+ Y ++ + ++C ++L+ + ++R Q L+ L
Sbjct: 581 TLLNVYHAFKS--DEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNL------ 632
Query: 535 NQTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLR 594
+L++ + +I KA+ +G + VA R
Sbjct: 633 ---------ELNTTDYESP------KYFDNIRKAL-ASGFFMQVA------------KKR 664
Query: 595 KSSNSAAKAHPVWY---DGRREVHIHPSSINSQLKSFEHP-FLVFLEKVETNKVFLRDTT 650
+ Y ++V IHPS++ ++++ E V T+K ++R T
Sbjct: 665 SGAKG--------YITVKDNQDVLIHPSTV-----LGHDAEWVIYNEFVLTSKNYIRTVT 711
Query: 651 IVSP 654
V P
Sbjct: 712 SVRP 715
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 735 | |||
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.95 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.94 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.92 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.91 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.91 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.91 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.91 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.9 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.9 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.9 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.9 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.89 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.88 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.88 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.88 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.88 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.86 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.86 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.85 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.85 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.85 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.85 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.85 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.84 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.84 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.84 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.83 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.83 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.82 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.82 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.81 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.81 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.79 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.77 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.76 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.75 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.73 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.73 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.72 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.72 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.69 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.69 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.68 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.68 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.67 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.63 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.62 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.61 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.6 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.6 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.39 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.59 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.57 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.55 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.54 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.39 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.36 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.31 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.28 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.26 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.17 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.17 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.11 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.96 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 98.93 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 98.59 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 98.5 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 97.2 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 97.15 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.84 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 96.79 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 96.79 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 96.72 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 96.7 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 96.64 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 96.62 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 96.36 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 96.35 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 96.33 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 96.32 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 96.29 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 96.03 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.01 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 95.42 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 94.94 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 92.83 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 87.0 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 85.1 |
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-88 Score=805.21 Aligned_cols=521 Identities=30% Similarity=0.496 Sum_probs=449.3
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
+.|.++.++.+.++++|||||+|+|++++|+++++++.+...+ +++++|+||||++.+.|++||+++|++.++|+
T Consensus 196 l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr 270 (773)
T 2xau_A 196 LLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGR 270 (773)
T ss_dssp HHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCCHHHHHHTTSCCEEECCCC
T ss_pred HHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccHHHHHHHhcCCCcccccCc
Confidence 4567788999999999999999999999999999999998766 57999999999999999999999999999999
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.|||+.+|..... ..|
T Consensus 271 ~~pv~~~~~~~~~------------------------------------------------------------~~~---- 286 (773)
T 2xau_A 271 TYPVELYYTPEFQ------------------------------------------------------------RDY---- 286 (773)
T ss_dssp CCCEEEECCSSCC------------------------------------------------------------SCH----
T ss_pred ccceEEEEecCCc------------------------------------------------------------hhH----
Confidence 9999998875310 000
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhc----cCCCCCcEEEEecCCCCHHHH
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYR----FGGPSSDWLLALHSSVASVDQ 237 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----~~~~~~~~i~~LHs~l~~~eq 237 (735)
.+.....+..++...++|++|||+||+++|+.+++.|..... .....++.+.++||+|++++|
T Consensus 287 -------------~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 287 -------------LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp -------------HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHH
T ss_pred -------------HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHH
Confidence 011223444555556789999999999999999999875210 011235789999999999999
Q ss_pred HHhcCCCC-----CCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC
Q 047202 238 KKVFLRPP-----EKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP 312 (735)
Q Consensus 238 ~~vf~~~~-----~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~ 312 (735)
.++|+.++ +|.+|||||||+||+|||||+|++|||+|++|++.||+..+++.|.+.|+|++++.||+|||||.++
T Consensus 354 ~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~ 433 (773)
T 2xau_A 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433 (773)
T ss_dssp GGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS
T ss_pred HHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEceehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCC
Q 047202 313 GICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELT 392 (735)
Q Consensus 313 G~c~rL~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT 392 (735)
|.||+||++.+|...+.+++.|||+|.+|++++|++|.+|++++..| .|++||+.+++..|++.|..+||||.+|+||
T Consensus 434 G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~~p~~~~i~~a~~~L~~lgald~~~~lT 511 (773)
T 2xau_A 434 GKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLT 511 (773)
T ss_dssp EEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC
T ss_pred CEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhc--cccCCCcHHHHHHHHHHHHHcCCcccCCCcC
Confidence 99999999999966578999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCc
Q 047202 393 PLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSD 472 (735)
Q Consensus 393 ~lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sD 472 (735)
++|+.|+.||++|++||||+.|+.++|++++++|||+|++++||+.|.+.+++++.+|..|. ...||
T Consensus 512 ~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~-------------~~~~D 578 (773)
T 2xau_A 512 PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA-------------HPDGD 578 (773)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTC-------------CTTBH
T ss_pred hhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhcc-------------CCCCc
Confidence 99999999999999999999999999999999999999999999999998888888888773 36799
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccc
Q 047202 473 HLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDE 552 (735)
Q Consensus 473 hl~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~ 552 (735)
|++++++|++|.+.... + ....+||++||||+++|+++.++|.||.++|...|+.....
T Consensus 579 ~~~~l~~~~~~~~~~~~-~-~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~------------------- 637 (773)
T 2xau_A 579 HITLLNVYHAFKSDEAY-E-YGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTT------------------- 637 (773)
T ss_dssp HHHHHHHHHHHTSHHHH-H-HCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHhccc-c-chHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-------------------
Confidence 99999999999753211 0 11268999999999999999999999999999988732110
Q ss_pred cccccccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCe
Q 047202 553 SQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPF 632 (735)
Q Consensus 553 ~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~ 632 (735)
..+ ...++..|+++||+|||||||+.... + ..+....+...|+|||+|+++. .++|
T Consensus 638 --~~~-~~~~~~~i~~~l~~g~~~~~a~~~~~---~--------------~~y~~~~~~~~~~ihp~s~l~~----~~~~ 693 (773)
T 2xau_A 638 --DYE-SPKYFDNIRKALASGFFMQVAKKRSG---A--------------KGYITVKDNQDVLIHPSTVLGH----DAEW 693 (773)
T ss_dssp --CTT-STTHHHHHHHHHHHHHTTSEEEECCC-------------------CEEETTTCCEEEECTTCCCCT----TCSE
T ss_pred --CCC-chhhHHHHHHHHHHhChHhheeeccC---C--------------CcceEeeCCCEEEECCCcccCC----CCCE
Confidence 001 12356789999999999999987532 0 0011222345799999999953 3799
Q ss_pred EEEEeecccCcceeecCCCcChHHHHHhcCce
Q 047202 633 LVFLEKVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 633 lvy~e~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
|||+|++.|++.|||++|.|+|.||.-+++..
T Consensus 694 ~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~ 725 (773)
T 2xau_A 694 VIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAY 725 (773)
T ss_dssp EEEEEEEESSSEEEEEEEECCHHHHHHHCTTT
T ss_pred EEEEEeeccchhheeecccCCHHHHHHHHHHh
Confidence 99999999999999999999999999988764
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 735 | ||||
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 7e-34 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-13 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 1e-07 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 5e-05 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 5e-04 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 6e-04 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 129 bits (326), Expect = 7e-34
Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 23/229 (10%)
Query: 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRK 250
+ FLP + + +AAS R G S ++ L+ + + +K
Sbjct: 36 KRPTAWFLPSIRAA----NVMAASLRKAGKS---VVVLNRKTFEREYPTIK----QKKPD 84
Query: 251 VIIATNIAETSITIDDVVYVFDCGR-HKENRYNSQKKLSSMVEDWISQANARQRRGRAGR 309
I+AT+IAE + V V DC K + +K++ IS ++A QRRGR GR
Sbjct: 85 FILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 143
Query: 310 VKPGICYSLYTRHRYEKLMRPYQVPEMQR----MPLVELCLQIKLLSLGRIKIFLSKALE 365
P Y Y + + M L + ++ +++ +K
Sbjct: 144 N-PNRDGDSYY---YSEPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEG-TKTPV 198
Query: 366 PPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFG 414
P E + + + L +AK + K G
Sbjct: 199 SPGEMRL-RDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFEG 246
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 735 | |||
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.87 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.71 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.68 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.68 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.67 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.66 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.66 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.65 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.63 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.62 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.57 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.55 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.49 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.34 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.34 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.29 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.96 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.89 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.06 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.01 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.96 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.92 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.92 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 97.85 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.63 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 96.59 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 96.18 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 96.12 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 96.03 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 95.89 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 95.87 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.61 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 95.31 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.15 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 95.08 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 94.53 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 94.13 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 93.86 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.77 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 84.29 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 80.35 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.95 E-value=1.3e-30 Score=270.85 Aligned_cols=203 Identities=17% Similarity=0.106 Sum_probs=157.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.+|++||||||..+++.+++.|... +..|++|||.++.++++++ ++|.++|||||||||+|||| ||+|
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~-------g~~V~~l~~~~~~~e~~~~----~~~~~~~~~~t~~~~~~~~~-~~~~ 102 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKA-------GKSVVVLNRKTFEREYPTI----KQKKPDFILATDIAEMGANL-CVER 102 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-------TCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEcCcCcHhHHhhh----hcCCcCEEEEechhhhceec-CceE
Confidence 4899999999999999999999865 4569999999999988765 46789999999999999999 6999
Q ss_pred EEeCCcc-cceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCc-EEEEceehhhHhhhcCCCCCCcccccc----hHH
Q 047202 270 VFDCGRH-KENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPG-ICYSLYTRHRYEKLMRPYQVPEMQRMP----LVE 343 (735)
Q Consensus 270 VIDsG~~-k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G-~c~rL~t~~~~~~~~~~~~~PEi~r~~----L~~ 343 (735)
|||+|+. |...||+.+++..+...|||+|++.||+|||||+.+| .||.+|+... .+...+++.++. |.+
T Consensus 103 vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~~~-----~~d~~~~~~~te~~i~l~~ 177 (299)
T d1yksa2 103 VLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPT-----SENNAHHVCWLEASMLLDN 177 (299)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC-----CCCCTTBHHHHHHHHHHTT
T ss_pred EEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCCCC-----CCcccchhhhhhHHHHhhC
Confidence 9999994 8999999999999999999999999999999998654 4666776432 233445555444 333
Q ss_pred HHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhccCCCchHHHHHH
Q 047202 344 LCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMM 411 (735)
Q Consensus 344 l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~lp~~p~~~k~l 411 (735)
+.+.++.++..+...| +++++|+.+....+...|..+|||+..+-.|++|..++.+++.+...+++
T Consensus 178 i~l~~~~~g~~~~~e~--~~~~~p~g~~~L~~~~~l~~l~aL~~~d~p~~La~~va~~~~~~~~~~~~ 243 (299)
T d1yksa2 178 MEVRGGMVAPLYGVEG--TKTPVSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWC 243 (299)
T ss_dssp SCCGGGCCCCCSTTHH--HHSSSCTTTTCCCHHHHHHHHHHHHTTCCCHHHHHHHHHTTCCTTCCGGG
T ss_pred cccccccccccchhhh--ccccCCCchhhhhHhHHHHHHHHHhhcCCCcchHHHHHhcccccccccce
Confidence 3455566666666666 67888877766778889999999988777788888888887776555443
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|