Citrus Sinensis ID: 047247

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MDITLFSPKGTHSHHFFSLSNQQLQQSNGDQIALDMQTNNNNNIQPQNSCHTSTSRSSDSGEPCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLACDDDNNSSNNGNGDREEEE
cccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
cccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEHcccccccHHHcccccccEEEEEHHHHHHccccccHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHcccc
mditlfspkgthshhffslSNQQLQQSNGDQIALDMqtnnnnniqpqnschtstsrssdsgepcadttggnKWASKLLKECARAISDKDSSKIHHLLWMLNElaspygdcdQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQevspwttfghvasNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATrndetphlkLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVeltkgtlgvkedeAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEeadltssrYDFVKCFEECLRFYTLYFEMLEesfvptsnerlMLERECSRDIVRVLAcdddnnssnngngdreeee
mditlfspkgthSHHFFSLSNQQLQQSNGDQIALDMQTNNNNNIQPQNSCHTSTSRSSDSGEPCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALAtrndetphlkltVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTkgtlgvkedeavAVNCIGALRRVAVEERGAVIqmfqslkpkvvTIVEEEadltssrydfVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRvlacdddnnssnngngdreeee
MDITLFSPKGTHSHHFFslsnqqlqqsnGDQIALDMQTnnnnnIQPQNschtstsrssdsGEPCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHlkltvvvtvslvrlvMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLACdddnnssnngngdREEEE
************************************************************************WASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLAC******************
*DITL***********************************************************************LLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCY************FDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEAL******TPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLACDDDN*S************
MDITLFSPKGTHSHHFFSLSNQQLQQSNGDQIALDMQTNNNNNIQP***********************GNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLACDDDNN*************
*********************Q**************************************GEPCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLACDDDNNSSNNGNGDR****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDITLFSPKGTHSHHFFSLSNQQLQQSNGDQIALDMQTNNNNNIQPQNSCHTSTSRSSDSGEPCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERECSRDIVRVLACDDDNNSSNNGNGDREEEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q9SZF7531 Protein SHORT-ROOT OS=Ara yes no 0.808 0.587 0.557 1e-100
A2XIA8603 Protein SHORT-ROOT 2 OS=O N/A no 0.766 0.490 0.514 4e-89
Q75I13603 Protein SHORT-ROOT 2 OS=O yes no 0.766 0.490 0.514 4e-89
A2YN56602 Protein SHORT-ROOT 1 OS=O N/A no 0.769 0.493 0.518 9e-89
Q8H2X8602 Protein SHORT-ROOT 1 OS=O yes no 0.769 0.493 0.515 5e-88
Q9SN22410 Scarecrow-like protein 32 no no 0.753 0.709 0.316 1e-36
Q9SDQ3593 Scarecrow-like protein 1 no no 0.829 0.539 0.325 2e-36
Q8GVE1544 Chitin-inducible gibberel no no 0.756 0.536 0.320 6e-36
Q9S7H5413 Scarecrow-like protein 21 no no 0.730 0.682 0.323 2e-35
Q9LDL7490 Scarecrow-like transcript no no 0.740 0.583 0.317 2e-35
>sp|Q9SZF7|SHR_ARATH Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1 Back     alignment and function desciption
 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/328 (55%), Positives = 235/328 (71%), Gaps = 16/328 (4%)

Query: 63  PCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQAL 122
           P  D +   KWA  +L E ARA SDKD+++   +LW LNEL+SPYGD +QKLASYFLQAL
Sbjct: 132 PSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQAL 191

Query: 123 FCKATESGQRCYKTLTSVA--EKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALD 180
           F + T SG+RCY+T+ + A  EK+ SF+S RK +LKFQEVSPW TFGHVA+NGAILEA+D
Sbjct: 192 FNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVD 251

Query: 181 GETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTV-------SLVRLVMKEI 233
           GE K+HI+D+S+T CTQWPTLLEALATR+D+TPHL+LT VV         +    +MKEI
Sbjct: 252 GEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEI 311

Query: 234 GQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVE--ER 291
           G RMEKFARLMGVPF+F +I  +  L E     L VK DE +A+NC+GA+  +A     R
Sbjct: 312 GNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRGSPR 371

Query: 292 GAVIQMFQSLKPKVVTIVEEEADLTSSR---YD--FVKCFEECLRFYTLYFEMLEESFVP 346
            AVI  F+ L+P++VT+VEEEADL       +D  F++ F ECLR++ + FE  EESF  
Sbjct: 372 DAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPR 431

Query: 347 TSNERLMLERECSRDIVRVLACDDDNNS 374
           TSNERLMLER   R IV ++AC+  +++
Sbjct: 432 TSNERLMLERAAGRAIVDLVACEPSDST 459
Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3.
Arabidopsis thaliana (taxid: 3702)
>sp|A2XIA8|SHR2_ORYSI Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1 Back     alignment and function description
>sp|Q75I13|SHR2_ORYSJ Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1 Back     alignment and function description
>sp|A2YN56|SHR1_ORYSI Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1 Back     alignment and function description
>sp|Q8H2X8|SHR1_ORYSJ Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SN22|SCL32_ARATH Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
224133250411 GRAS family transcription factor [Populu 0.862 0.810 0.853 1e-160
147795783436 hypothetical protein VITISV_023622 [Viti 0.953 0.844 0.812 1e-160
225434016436 PREDICTED: protein SHORT-ROOT [Vitis vin 0.953 0.844 0.812 1e-160
224093015411 GRAS family transcription factor [Populu 0.862 0.810 0.844 1e-157
356550396443 PREDICTED: protein SHORT-ROOT-like [Glyc 0.945 0.823 0.699 1e-142
449454588459 PREDICTED: protein SHORT-ROOT-like [Cucu 0.813 0.684 0.764 1e-140
449516553459 PREDICTED: LOW QUALITY PROTEIN: protein 0.813 0.684 0.764 1e-140
356557062437 PREDICTED: protein SHORT-ROOT-like [Glyc 0.790 0.697 0.784 1e-140
158962470412 putative SHORT-ROOT protein [Ipomoea nil 0.862 0.808 0.736 1e-140
158142112 502 short-root [Pinus radiata] 0.774 0.595 0.651 1e-113
>gi|224133250|ref|XP_002327997.1| GRAS family transcription factor [Populus trichocarpa] gi|222837406|gb|EEE75785.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/342 (85%), Positives = 312/342 (91%), Gaps = 9/342 (2%)

Query: 45  QPQNSCHTSTSRSSDSGEPCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELA 104
           QPQ S HTSTSRSSDSGE C    GGNKWASKLL ECARAIS+KDSSKIHHLLWMLNELA
Sbjct: 12  QPQTS-HTSTSRSSDSGEACG---GGNKWASKLLSECARAISEKDSSKIHHLLWMLNELA 67

Query: 105 SPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWT 164
           SPYGDCDQKLASYFLQALFCKATESGQRC+KTLT+VAEKSHSFDSARKLILKFQEVSPWT
Sbjct: 68  SPYGDCDQKLASYFLQALFCKATESGQRCFKTLTTVAEKSHSFDSARKLILKFQEVSPWT 127

Query: 165 TFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVS 224
           TFGHVASNGAILEALDGE+KLHIID+SNTLCTQWPTLLEALATRNDETP LKLTVVVT S
Sbjct: 128 TFGHVASNGAILEALDGESKLHIIDISNTLCTQWPTLLEALATRNDETPRLKLTVVVTAS 187

Query: 225 LVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALR 284
           +VR VMKEIGQRMEKFARLMGVPFEFKVI+ LN + ELTK  LGV+EDEAVA+NCIGALR
Sbjct: 188 IVRSVMKEIGQRMEKFARLMGVPFEFKVISVLNHIGELTKEGLGVQEDEAVAINCIGALR 247

Query: 285 RVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESF 344
           RV V+ER +VIQ+F+SL P+VVTIVEEEAD TSSRYDFVKCFEECLR+YTLYFEMLEESF
Sbjct: 248 RVEVDERSSVIQLFRSLNPRVVTIVEEEADFTSSRYDFVKCFEECLRYYTLYFEMLEESF 307

Query: 345 VPTSNERLMLERECSRDIVRVLACDDDNNSSNNGNGDREEEE 386
           VPTSNERLMLERECSR+IVRVLACD++      G G+ E  E
Sbjct: 308 VPTSNERLMLERECSRNIVRVLACDEE-----TGGGECERRE 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147795783|emb|CAN61051.1| hypothetical protein VITISV_023622 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434016|ref|XP_002272196.1| PREDICTED: protein SHORT-ROOT [Vitis vinifera] gi|296081342|emb|CBI17688.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224093015|ref|XP_002309782.1| GRAS family transcription factor [Populus trichocarpa] gi|222852685|gb|EEE90232.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550396|ref|XP_003543573.1| PREDICTED: protein SHORT-ROOT-like [Glycine max] Back     alignment and taxonomy information
>gi|449454588|ref|XP_004145036.1| PREDICTED: protein SHORT-ROOT-like [Cucumis sativus] gi|449471114|ref|XP_004153213.1| PREDICTED: protein SHORT-ROOT-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516553|ref|XP_004165311.1| PREDICTED: LOW QUALITY PROTEIN: protein SHORT-ROOT-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356557062|ref|XP_003546837.1| PREDICTED: protein SHORT-ROOT-like [Glycine max] Back     alignment and taxonomy information
>gi|158962470|dbj|BAF91722.1| putative SHORT-ROOT protein [Ipomoea nil] Back     alignment and taxonomy information
>gi|158142112|gb|ABW20412.1| short-root [Pinus radiata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2120106531 SHR "AT4G37650" [Arabidopsis t 0.792 0.576 0.552 1.4e-87
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.738 0.581 0.312 4.6e-34
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.727 0.680 0.317 6.7e-33
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.733 0.477 0.323 2.7e-32
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.738 0.477 0.307 7.7e-30
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.727 0.430 0.312 8e-29
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.725 0.511 0.304 1.8e-26
TAIR|locus:2083073410 AT3G49950 "AT3G49950" [Arabido 0.759 0.714 0.277 1.9e-26
TAIR|locus:2087994510 AT3G13840 "AT3G13840" [Arabido 0.740 0.560 0.300 1.3e-25
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.691 0.457 0.315 2.9e-25
TAIR|locus:2120106 SHR "AT4G37650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 178/322 (55%), Positives = 223/322 (69%)

Query:    63 PCADTTGGNKWASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQAL 122
             P  D +   KWA  +L E ARA SDKD+++   +LW LNEL+SPYGD +QKLASYFLQAL
Sbjct:   132 PSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQAL 191

Query:   123 FCKATESGQRCYKTLTSVA--EKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALD 180
             F + T SG+RCY+T+ + A  EK+ SF+S RK +LKFQEVSPW TFGHVA+NGAILEA+D
Sbjct:   192 FNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVD 251

Query:   181 GETKLHIIDMSNTLCTQWPTLLEALATRNDETPHXXXXXXXXX-------XXXXXXMKEI 233
             GE K+HI+D+S+T CTQWPTLLEALATR+D+TPH                      MKEI
Sbjct:   252 GEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEI 311

Query:   234 GQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVE--ER 291
             G RMEKFARLMGVPF+F +I  +  L E     L VK DE +A+NC+GA+  +A     R
Sbjct:   312 GNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRGSPR 371

Query:   292 GAVIQMFQSLKPKVVTIVEEEADLTSSR---YD--FVKCFEECLRFYTLYFEMLEESFVP 346
              AVI  F+ L+P++VT+VEEEADL       +D  F++ F ECLR++ + FE  EESF  
Sbjct:   372 DAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPR 431

Query:   347 TSNERLMLERECSRDIVRVLAC 368
             TSNERLMLER   R IV ++AC
Sbjct:   432 TSNERLMLERAAGRAIVDLVAC 453
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008356 "asymmetric cell division" evidence=IMP
GO:0009956 "radial pattern formation" evidence=IMP
GO:0032350 "regulation of hormone metabolic process" evidence=NAS
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0055072 "iron ion homeostasis" evidence=IMP
GO:0045930 "negative regulation of mitotic cell cycle" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083073 AT3G49950 "AT3G49950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087994 AT3G13840 "AT3G13840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS12
GRAS family transcription factor (381 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 5e-93
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  283 bits (726), Expect = 5e-93
 Identities = 124/301 (41%), Positives = 171/301 (56%), Gaps = 13/301 (4%)

Query: 76  KLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYK 135
            LL  CA A+S  D S    +L  LN+LASP GD  Q+LA+YF +AL  +   SG   Y 
Sbjct: 3   HLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSIYS 62

Query: 136 TLTSVAEKSHSFDSARKLI-LK-FQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNT 193
            L      S   DS   L   K F EVSP+  FGH  +N AILEA +GE ++HIID    
Sbjct: 63  ALPPSP--STPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 194 LCTQWPTLLEALATRNDETPHLKLTVVVT-VSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252
              QWP+L++ALA+R    PHL++T + +        ++E G R+ +FA  +GVPFEF  
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVE----ERGAVIQMFQSLKPKVVTI 308
           +    RL +L    L V+  EA+AVNC+ AL R+  E    E    +++ +SL PKVVT+
Sbjct: 181 LV-AKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVTL 239

Query: 309 VEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLEREC-SRDIVRVLA 367
           VE+EA+  S+   F+  F E L +Y+  F+ LE +    S ER  +ERE   R+IV V+A
Sbjct: 240 VEQEANHNSA--PFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVA 297

Query: 368 C 368
           C
Sbjct: 298 C 298

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.31
PRK06202232 hypothetical protein; Provisional 95.08
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.71
TIGR00740239 methyltransferase, putative. A simple BLAST search 94.01
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 93.81
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 93.59
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 93.36
PLN02233261 ubiquinone biosynthesis methyltransferase 92.76
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 92.75
PRK12335287 tellurite resistance protein TehB; Provisional 92.67
TIGR03438301 probable methyltransferase. This model represents 92.66
PRK11207197 tellurite resistance protein TehB; Provisional 92.45
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 92.01
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 91.84
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 91.35
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 90.44
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 90.05
PLN02336 475 phosphoethanolamine N-methyltransferase 89.67
PF03848192 TehB: Tellurite resistance protein TehB; InterPro: 89.54
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 89.42
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 89.41
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 89.23
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 88.89
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 87.94
PF02353273 CMAS: Mycolic acid cyclopropane synthetase; InterP 87.53
PLN02336475 phosphoethanolamine N-methyltransferase 87.05
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 86.59
PLN02585315 magnesium protoporphyrin IX methyltransferase 86.46
PLN02244340 tocopherol O-methyltransferase 86.43
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 86.16
COG1341 398 Predicted GTPase or GTP-binding protein [General f 86.03
PRK11705383 cyclopropane fatty acyl phospholipid synthase; Pro 85.38
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 84.75
PRK05785226 hypothetical protein; Provisional 84.36
COG2230283 Cfa Cyclopropane fatty acid synthase and related m 83.85
COG2227243 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- 81.29
TIGR00452314 methyltransferase, putative. Known examples to dat 80.75
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 80.04
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-95  Score=733.35  Aligned_cols=309  Identities=35%  Similarity=0.586  Sum_probs=289.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHhhhhccCCCccccccchhcccCChHHHHHH
Q 047247           74 ASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKL  153 (386)
Q Consensus        74 l~~LL~~cA~Av~~~~~~~A~~lL~~L~~laSp~Gd~~qRlA~yF~~AL~~Rl~~~~~~~~~~l~~~~~~~~~~~~~~~~  153 (386)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+++++.|..+...............+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999998887765443222223455678


Q ss_pred             HHHHHhcCchHHHHHHHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccc-hHHHHHH
Q 047247          154 ILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSL-VRLVMKE  232 (386)
Q Consensus       154 ~~~f~~~~P~~kfa~~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~-~~~~l~e  232 (386)
                      ++.|++.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.+ +.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999999999998654 5679999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccc------cchHHHHHHHHHhcCCcEE
Q 047247          233 IGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVA------VEERGAVIQMFQSLKPKVV  306 (386)
Q Consensus       233 tg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~------~~~r~~vL~~ir~L~P~vv  306 (386)
                      ||+||.+||+++||||||++|.. ++||++++++|++++||+|||||+++|||+.      .+||+.||+.||+|+|+||
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~-~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv  239 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVV-ESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV  239 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEeccc-CchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence            99999999999999999999653 4899999999999999999999999999997      4589999999999999999


Q ss_pred             EEeeecCCCCCCccchHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHhh-hccccccccccCCCCCccCCCCcccccc
Q 047247          307 TIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERE-CSRDIVRVLACDDDNNSSNNGNGDREEE  385 (386)
Q Consensus       307 vlvE~ea~~n~~~~~F~~RF~eaL~~YsalFDsLda~~~~~s~eR~~iE~~-~g~eI~niVAcEG~~RvER~E~~~~W~~  385 (386)
                      |++|+|+|||+|  +|++||.|||+||+++|||||+++|+++++|..+|+. ||+||+|||||||.+|+||||++++|++
T Consensus       240 v~~E~ea~~n~~--~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~  317 (374)
T PF03514_consen  240 VLVEQEADHNSP--SFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRR  317 (374)
T ss_pred             EEEeecCCCCCC--chHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHH
Confidence            999999999999  9999999999999999999999999999999999998 9999999999999999999999999985

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only] Back     alignment and domain information
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00452 methyltransferase, putative Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 80/305 (26%)

Query: 73  WASKLLKEC--ARAISDKDSSKIHHLLWMLNELASPYGDCDQKL--ASYFLQALFCKATE 128
           W +  LK C     + +     ++ +       +    +   ++      L+ L     +
Sbjct: 186 WLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--K 241

Query: 129 SGQRCYKTLTSVAEKSH--SFD-SARKLILKFQEVSPWTTFGHVASNGAILEALDGETKL 185
             + C   L +V       +F+ S + L+         TT         + + L   T  
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILL---------TT-----RFKQVTDFLSAATTT 287

Query: 186 HII----------DMSNTLCTQW----------------PTLLEALA-------TRNDET 212
           HI           D   +L  ++                P  L  +A          D  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 213 PHL---KLTVVVTVSLVRLVMKEIGQRMEKFARLM-GVPFEFKVITGLNRL-VELTKGTL 267
            H+   KLT ++  SL  L   E  +  ++ +           +   L+ +  ++ K   
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIK--- 401

Query: 268 GVKEDEAVAVNCI--GALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSS---RYDF 322
              +   V         + +   E   ++  ++  LK K    +E E  L  S    Y+ 
Sbjct: 402 --SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK----LENEYALHRSIVDHYNI 455

Query: 323 VKCFE 327
            K F+
Sbjct: 456 PKTFD 460

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 96.6
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 95.7
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 94.78
3dtn_A234 Putative methyltransferase MM_2633; structural gen 94.7
1vl5_A260 Unknown conserved protein BH2331; putative methylt 94.38
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 94.22
3m70_A286 Tellurite resistance protein TEHB homolog; structu 94.2
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.93
3dh0_A219 SAM dependent methyltransferase; cystal structure, 93.85
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 93.69
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 93.65
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 93.41
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.98
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 92.9
3hnr_A220 Probable methyltransferase BT9727_4108; structural 92.63
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 92.37
3dp7_A363 SAM-dependent methyltransferase; structural genomi 92.36
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 92.33
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 92.27
3f4k_A257 Putative methyltransferase; structural genomics, P 92.14
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 91.92
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 91.46
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 91.4
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 91.38
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 91.35
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 91.28
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 91.11
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 90.87
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 90.76
1xxl_A239 YCGJ protein; structural genomics, protein structu 90.67
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 90.56
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 90.46
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 90.46
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 90.45
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 90.34
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 89.99
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 89.98
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 89.97
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 89.78
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 89.68
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 89.59
1wzn_A252 SAM-dependent methyltransferase; structural genomi 89.57
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 89.53
3lcc_A235 Putative methyl chloride transferase; halide methy 89.5
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 89.45
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 89.36
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 89.27
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 89.19
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 89.11
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 88.71
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 88.45
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 88.4
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 88.38
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 87.77
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 87.56
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 87.36
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 87.3
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 86.95
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 86.74
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 86.41
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 86.32
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 86.16
3g07_A292 7SK snRNA methylphosphate capping enzyme; structur 85.63
3i9f_A170 Putative type 11 methyltransferase; structural gen 85.59
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 85.48
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 85.39
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 85.32
2p7i_A250 Hypothetical protein; putative methyltransferase, 85.14
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 85.01
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 84.89
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 84.88
3r0q_C 376 Probable protein arginine N-methyltransferase 4.2; 84.02
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 83.92
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 83.62
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 83.24
4fsd_A 383 Arsenic methyltransferase; rossmann fold; 1.75A {C 82.81
2kw5_A202 SLR1183 protein; structural genomics, northeast st 82.78
4e2x_A 416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 82.56
3gu3_A284 Methyltransferase; alpha-beta protein, structural 82.41
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 82.25
2y1w_A 348 Histone-arginine methyltransferase CARM1; histone 82.1
3ggd_A245 SAM-dependent methyltransferase; YP_325210.1, stru 81.9
3iv6_A261 Putative Zn-dependent alcohol dehydrogenase; alpha 81.81
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 80.6
3g89_A249 Ribosomal RNA small subunit methyltransferase G; 1 80.29
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=96.60  E-value=0.069  Score=50.00  Aligned_cols=105  Identities=13%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCC--ceEEEEeecCCccccc
Q 047247          185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGV--PFEFKVITGLNRLVEL  262 (386)
Q Consensus       185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgi--pFeF~~v~~~~~~e~l  262 (386)
                      -+|+|+|.|.|.    +...|+.+- ++|..+||||+.   +..-++.+.+++.    ..|.  +++|..  .  ++.++
T Consensus        72 ~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~---s~~ml~~A~~~~~----~~~~~~~v~~~~--~--D~~~~  135 (261)
T 4gek_A           72 TQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDN---SPAMIERCRRHID----AYKAPTPVDVIE--G--DIRDI  135 (261)
T ss_dssp             CEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEES---CHHHHHHHHHHHH----TSCCSSCEEEEE--S--CTTTC
T ss_pred             CEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEEC---CHHHHHHHHHHHH----hhccCceEEEee--c--ccccc
Confidence            479999999984    455566553 345789999995   3345655555543    3343  444433  2  34444


Q ss_pred             cccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEE-Eeeec
Q 047247          263 TKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVT-IVEEE  312 (386)
Q Consensus       263 ~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvv-lvE~e  312 (386)
                      ..     .+-..+  -|.+.||++....+..+|+.| |.|+|.-++ ++|.-
T Consensus       136 ~~-----~~~d~v--~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          136 AI-----ENASMV--VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             CC-----CSEEEE--EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cc-----cccccc--eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            32     222343  345578998766677888877 558998654 44553
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.43
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.3
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 96.13
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 95.75
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.09
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 94.84
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 94.82
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 94.64
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 94.57
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 94.38
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 94.18
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 94.03
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 93.85
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.78
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 93.2
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 92.89
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 88.98
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 88.95
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 88.08
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 87.56
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 84.18
d1g6q1_ 328 Arginine methyltransferase, HMT1 {Baker's yeast (S 83.38
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 82.72
d1kpga_285 CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} 82.27
d1dusa_194 Hypothetical protein MJ0882 {Archaeon Methanococcu 80.83
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.023  Score=49.14  Aligned_cols=106  Identities=12%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccc
Q 047247          183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVEL  262 (386)
Q Consensus       183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l  262 (386)
                      ..-||+|+|.|.|.    +...|+... ..|..+||||+.   +..-++.+.+++.    ..+....++.+..  +..++
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~---S~~ml~~A~~~~~----~~~~~~~~~~~~~--d~~~~  104 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDN---SQPMVERCRQHIA----AYHSEIPVEILCN--DIRHV  104 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECS---CHHHHHHHHHHHH----TSCCSSCEEEECS--CTTTC
T ss_pred             CCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCC---CHHHHHHHHHHhH----hhcccchhhhccc--hhhcc
Confidence            34589999999984    334454432 246789999996   3345555554443    3444444554432  22222


Q ss_pred             cccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247          263 TKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV  309 (386)
Q Consensus       263 ~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv  309 (386)
                             ..+..-+|.|.+.||++....+..+|+.| |.|+|.-.++.
T Consensus       105 -------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         105 -------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence                   22344567777889998755666788877 66899975555
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure