Citrus Sinensis ID: 047248

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLPETRQMSSGDDEIDTEG
ccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHEEEcccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEcccccEcccccccccccccccccccccccccccccccccc
mqfeagislsrgaavtegpslspslnQDALWQMNLrtneamesgslperpgepdcsyyirtglcrfgatcrfnhppnrKLAIATARikgdypervgqpecqyylktgtckfgatckfhhprdkagiaGRVSLnvlgyplrpneIECAYYLrtgqckfgstckfhhpqpnnmmvslrgspvyptvqspttpsqqsyaggitnwsrasfipsprwqgpssyapmllpqgmvsvpgwntysgqlgsvsssenlqqtsgnsqiygasrqtepsnsgsqgtmssfrsgsvpvgfyalqresvfperpgqpecqfymktgdckfgavcrfhhprerllpvpdcvlspiglplrpgeplcifysrygickfgpsckfdhpmgiftynlsasssadapvrrflgsssatgalnlsseglveagsgrrlslpetrqmssgddeidteg
mqfeagislsrgaavtegpslspsLNQDALWQMNLRTNEAmesgslperpgepDCSYYIRTGLCRFGAtcrfnhppnRKLAIATArikgdypervGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSssatgalnlsseglveagsgrrlslpetrqmssgddeidteg
MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLPETRQMSSGDDEIDTEG
******************************************************CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHH*******************************GGITNWSRASFIP***W*****YAPMLLPQGMVSVPGWNTY************************************************PVGFYALQRESVF*****QPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLS*********************************************************
*******************************************************SYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA*IAGRV*LNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFH******************************************FIPSPR*************************************************************QGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVC*************************PGEPLCIFYSRYGICKFGPSCKFDH*******************************************************************
**********************PSLNQDALWQMNLRTNEA**********GEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYP***********SYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQI*******************SFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSL*****************
*********************************************LPERPGEPDCSYYIRTGLCRFGATCRFNHPPN************DYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ***************************YAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENL**********************************************VFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGI******ASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRL*******************
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MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLPETRQMSSGDDEIDTEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q9SWF9417 Zinc finger CCCH domain-c N/A no 0.936 0.985 0.782 0.0
Q2R4J4444 Zinc finger CCCH domain-c yes no 0.940 0.930 0.632 1e-160
Q2QT65454 Zinc finger CCCH domain-c no no 0.952 0.920 0.611 1e-151
Q5JLB5439 Zinc finger CCCH domain-c no no 0.876 0.876 0.647 1e-150
Q8GXX7397 Zinc finger CCCH domain-c yes no 0.870 0.962 0.617 1e-149
Q8L7N8375 Zinc finger CCCH domain-c no no 0.815 0.954 0.579 1e-129
Q84W91468 Zinc finger CCCH domain-c no no 0.801 0.752 0.513 1e-101
Q6NPN3465 Zinc finger CCCH domain-c no no 0.712 0.673 0.477 4e-84
Q5NAV3466 Zinc finger CCCH domain-c no no 0.813 0.766 0.447 5e-84
Q5NAW2476 Zinc finger CCCH domain-c no no 0.815 0.752 0.439 9e-80
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1 Back     alignment and function desciption
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/418 (78%), Positives = 368/418 (88%), Gaps = 7/418 (1%)

Query: 24  SLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA 83
           ++ Q+A+WQMNLR++E MESG  PE PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA
Sbjct: 5   TIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA 64

Query: 84  TARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNE 143
           TAR+KG++PER+GQPECQYYLKTGTCKFGATC+FHHP+DKAG+AGRV+LN+LGYPLRPNE
Sbjct: 65  TARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNE 124

Query: 144 IECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWS 203
            E AYYLRTGQCKFG+TCKFHHPQP+NM++S+RGS VYPTVQSPTTP QQSYA GITNWS
Sbjct: 125 SERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNWS 184

Query: 204 RASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGAS 263
            +S++PSPRWQGPSSYAP++LPQG+VSVPGW+TY GQ+G    SE+ QQT  N Q YG S
Sbjct: 185 SSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMG----SESPQQTMRNDQTYGTS 240

Query: 264 RQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCR 323
            Q E  N+G QG  S +RSGSVPVGFYALQR+++FPERP QPECQFYMKTGDCKFGAVCR
Sbjct: 241 HQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCR 300

Query: 324 FHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSA 383
           FHHPRER +P PDCVLSPIGLPLRPGEPLC+FYSRYGICKFGPSCKFDHPMGIFTYN+ A
Sbjct: 301 FHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNV-A 359

Query: 384 SSSADAPVRRFLGSSSATGALNLSSEGLVEAGSG--RRLSLPETRQMSSGDDEIDTEG 439
           S  AD P RR LGSSS T AL+LSSEGLVE+G+   RRLSL ETR +  GDD ID EG
Sbjct: 360 SPLADTPGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPPGDDNIDDEG 417

Pisum sativum (taxid: 3888)
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2 Back     alignment and function description
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1 Back     alignment and function description
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2 Back     alignment and function description
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2 Back     alignment and function description
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2 Back     alignment and function description
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1 Back     alignment and function description
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1 Back     alignment and function description
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
359476779441 PREDICTED: zinc finger CCCH domain-conta 0.993 0.988 0.849 0.0
255543128448 nucleic acid binding protein, putative [ 0.997 0.977 0.824 0.0
356531908426 PREDICTED: zinc finger CCCH domain-conta 0.965 0.995 0.789 0.0
224128808425 predicted protein [Populus trichocarpa] 0.936 0.967 0.840 0.0
356531906428 PREDICTED: zinc finger CCCH domain-conta 0.970 0.995 0.784 0.0
224146159414 predicted protein [Populus trichocarpa] 0.936 0.992 0.836 0.0
356568481428 PREDICTED: zinc finger CCCH domain-conta 0.970 0.995 0.770 0.0
357507737418 Zinc finger CCCH domain-containing prote 0.938 0.985 0.787 0.0
186477892418 zinc finger protein [Medicago sativa] gi 0.938 0.985 0.784 0.0
62901479417 RecName: Full=Zinc finger CCCH domain-co 0.936 0.985 0.782 0.0
>gi|359476779|ref|XP_002278934.2| PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/444 (84%), Positives = 406/444 (91%), Gaps = 8/444 (1%)

Query: 1   MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIR 60
           M+F+AGI + RG  VTEG SLSPSLNQDA+WQMNLR++E MESG  PERPGEPDCSYYIR
Sbjct: 1   MEFDAGIPMPRGQ-VTEGSSLSPSLNQDAMWQMNLRSSETMESGPYPERPGEPDCSYYIR 59

Query: 61  TGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHP 120
           TGLCRFG TCRFNHPPNRKLAIATAR+KG++PER+GQPECQYYLKTGTCKFGATCKFHHP
Sbjct: 60  TGLCRFGITCRFNHPPNRKLAIATARMKGEFPERMGQPECQYYLKTGTCKFGATCKFHHP 119

Query: 121 RDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPV 180
           RDKAGIAGRVSLN+LGYPLRP+EI+CAYYLRTGQCKFGSTCKFHHPQP++MMVSLRGSPV
Sbjct: 120 RDKAGIAGRVSLNILGYPLRPDEIDCAYYLRTGQCKFGSTCKFHHPQPSSMMVSLRGSPV 179

Query: 181 YPTVQSPTTPSQQSYAGGITNW--SRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYS 238
           YP+V SPTTP QQSYAGGITNW  SRASFIPSPRWQ PSSYAP++LPQG+VSVPGWN YS
Sbjct: 180 YPSVPSPTTPGQQSYAGGITNWPLSRASFIPSPRWQAPSSYAPLMLPQGVVSVPGWNAYS 239

Query: 239 GQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVF 298
           GQLGS S S+  QQT GN+QIYG SRQ+E  N+GSQGT S +RSGSVP+GFYALQRE+VF
Sbjct: 240 GQLGSPSESQ--QQTGGNNQIYGTSRQSEQPNTGSQGTFSPYRSGSVPIGFYALQRENVF 297

Query: 299 PERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSR 358
           PERPGQPECQFYMKTGDCKFGAVCRFHHPRERL+P PDCVLSPIGLPLRPGEPLCIFYSR
Sbjct: 298 PERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPTPDCVLSPIGLPLRPGEPLCIFYSR 357

Query: 359 YGICKFGPSCKFDHPMGIFTYNLSASSSADAP-VRRFLGSSSATGALNLSSEGLVEAGSG 417
           YGICKFGPSCKFDHPMGIF YNLSASSSADAP VRR LGSSS + AL LSS+GLVEAGS 
Sbjct: 358 YGICKFGPSCKFDHPMGIFAYNLSASSSADAPVVRRLLGSSSGSAALTLSSDGLVEAGST 417

Query: 418 --RRLSLPETRQMSSGDDEIDTEG 439
             RRLSLPETRQM  GDD IDTEG
Sbjct: 418 KPRRLSLPETRQMPPGDDNIDTEG 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543128|ref|XP_002512627.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548588|gb|EEF50079.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356531908|ref|XP_003534518.1| PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224128808|ref|XP_002328972.1| predicted protein [Populus trichocarpa] gi|222839206|gb|EEE77557.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531906|ref|XP_003534517.1| PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224146159|ref|XP_002325901.1| predicted protein [Populus trichocarpa] gi|222862776|gb|EEF00283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356568481|ref|XP_003552439.1| PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|357507737|ref|XP_003624157.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355499172|gb|AES80375.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|186477892|gb|ACC85690.1| zinc finger protein [Medicago sativa] gi|400530100|gb|AFP86282.1| zinc finger protein [Medicago sativa] Back     alignment and taxonomy information
>gi|62901479|sp|Q9SWF9.1|ZFNL_PEA RecName: Full=Zinc finger CCCH domain-containing protein ZFN-like gi|5616313|gb|AAD45720.1| zinc finger protein [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2043368468 AT2G47850 [Arabidopsis thalian 0.872 0.818 0.495 3.3e-102
TAIR|locus:2182988465 AT5G18550 [Arabidopsis thalian 0.838 0.791 0.457 1.5e-90
TAIR|locus:2081066462 AT3G06410 [Arabidopsis thalian 0.835 0.794 0.462 5.9e-89
TAIR|locus:2171407375 ZFN3 "zinc finger nuclease 3" 0.678 0.794 0.543 2.8e-82
TAIR|locus:2075477397 ZFN1 "zinc finger protein 1" [ 0.553 0.612 0.569 1.1e-80
TAIR|locus:2010562404 AT1G04990 [Arabidopsis thalian 0.706 0.767 0.384 4.2e-56
TAIR|locus:2087775524 HUA1 "ENHANCER OF AG-4 1" [Ara 0.694 0.582 0.348 4e-51
TAIR|locus:2101170448 AT3G48440 [Arabidopsis thalian 0.678 0.665 0.343 1.5e-37
TAIR|locus:100623071882 AT1G48195 [Arabidopsis thalian 0.177 0.951 0.538 6.6e-23
UNIPROTKB|C9K0K2112 CPSF4 "Cleavage and polyadenyl 0.145 0.571 0.356 1.3e-07
TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 206/416 (49%), Positives = 263/416 (63%)

Query:    27 QDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAR 86
             Q+++W++ L       S S PERPG PDC+YY+RTG+C +G  CR+NHP +R    AT R
Sbjct:    29 QESMWRLGLG------SDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVR 82

Query:    87 IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIEC 146
               G YPER G+P CQ+YLKTGTCKFGA+CKFHHP++  G    V LN+ GYP+R  + EC
Sbjct:    83 ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNEC 142

Query:   147 AYYLRTGQCKFGSTCKFHHPQPNNMMVSL--RGSP-VYPTVQSPTTPSQQSYAGGITNWS 203
             +YYL+TGQCKFG TCKFHHPQP    V      +P  YP+VQS   P Q  Y G  ++  
Sbjct:   143 SYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQS-LMPDQ--YGGPSSSLR 199

Query:   204 RA-SFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGA 262
              A + +P    QG  +Y PMLL  G+V +PGW+ YS  + S + S   Q   G + +YG 
Sbjct:   200 VARTLLPGSYMQG--AYGPMLLTPGVVPIPGWSPYSAPV-SPALSPGAQHAVGATSLYGV 256

Query:   263 SR--QTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGA 320
             ++   T PS  G   ++SS      P G   +Q+E  FPERPG+PECQ+Y+KTGDCKFG 
Sbjct:   257 TQLTSTTPSLPGVYPSLSS------PTG--VIQKEQAFPERPGEPECQYYLKTGDCKFGT 308

Query:   321 VCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYN 380
              C+FHHPR+R+ P  +CVLSPIGLPLRPG   C FY + G CKFG +CKFDHPMG   YN
Sbjct:   309 SCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYN 368

Query:   381 LSASSSADAPVRRFLGSSSATGAL----NLSSEGLVEAGS--GRRLSLPETRQMSS 430
              SASS ADAPV  +   SS  GAL    + SS  L+  G+       +P +R  S+
Sbjct:   369 PSASSLADAPVAPY-PVSSLLGALAAAPSSSSTELIAGGAKDAYMTGVPTSRSTSN 423
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9K0K2 CPSF4 "Cleavage and polyadenylation-specificity factor subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GXX7C3H33_ARATHNo assigned EC number0.61790.87010.9622yesno
Q2R4J4C3H63_ORYSJNo assigned EC number0.63230.94070.9301yesno
Q9SWF9ZFNL_PEANo assigned EC number0.78220.93620.9856N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.87.30.1
hypothetical protein (414 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 5e-08
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 1e-07
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 2e-07
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 9e-07
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 1e-06
smart0035627 smart00356, ZnF_C3H1, zinc finger 4e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 6e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 6e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 0.001
smart0035627 smart00356, ZnF_C3H1, zinc finger 0.003
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information 
 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 96  GQPECQYYLKTGTCKFGATCKFHHPR 121
               C+++ +TGTCK+G  CKF H +
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.94
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.62
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 99.41
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.37
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 99.33
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.19
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.72
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 98.6
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.57
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.47
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.47
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 98.43
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.3
KOG4791 667 consensus Uncharacterized conserved protein [Funct 98.28
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.21
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 98.06
smart0035627 ZnF_C3H1 zinc finger. 97.64
smart0035627 ZnF_C3H1 zinc finger. 97.54
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 97.25
KOG2333 614 consensus Uncharacterized conserved protein [Gener 97.22
KOG1763343 consensus Uncharacterized conserved protein, conta 97.2
KOG1763343 consensus Uncharacterized conserved protein, conta 96.89
KOG2333 614 consensus Uncharacterized conserved protein [Gener 96.89
KOG2185486 consensus Predicted RNA-processing protein, contai 96.56
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 96.54
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 96.3
KOG4791 667 consensus Uncharacterized conserved protein [Funct 96.09
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.03
COG5252299 Uncharacterized conserved protein, contains CCCH-t 95.48
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.45
KOG2185486 consensus Predicted RNA-processing protein, contai 95.14
COG5152259 Uncharacterized conserved protein, contains RING a 94.85
COG5152259 Uncharacterized conserved protein, contains RING a 94.54
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 93.71
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 93.57
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 91.94
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 91.12
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 91.12
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 88.56
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 86.88
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 85.25
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 81.92
KOG0153377 consensus Predicted RNA-binding protein (RRM super 81.32
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.94  E-value=4.2e-26  Score=229.50  Aligned_cols=252  Identities=39%  Similarity=0.756  Sum_probs=170.6

Q ss_pred             CCCCCCCCCcCccchhhcCCCCCCCCCCCCCCCchhhhhhh-hhccCCCCCCCCCccccccccccCCCC-CCCCCCCCCC
Q 047248           44 GSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAT-ARIKGDYPERVGQPECQYYLKTGTCKF-GATCKFHHPR  121 (439)
Q Consensus        44 ~~~p~Rpg~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~-~~~~~e~Per~~~p~C~~f~ktG~Ck~-G~~CkF~H~~  121 (439)
                      ..|++++++.+|.+|++++.|.++..|+|+|+..+...... .......+++.++++|++|.++|.|+| |++|+|+|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~  157 (332)
T KOG1677|consen   78 SPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGL  157 (332)
T ss_pred             CcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCc
Confidence            46999999999999999999999999999999633221111 134567889999999999999999999 9999999999


Q ss_pred             CCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcCCcCCcccc
Q 047248          122 DKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITN  201 (439)
Q Consensus       122 ~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~~~~~~~~~s~~~p~~qs~~~~~~~~y~~~~~~  201 (439)
                      .+.+...  .++..+.+.+.++++|.+|+++|.|+||.+|+|.|+......+....   + .+..  .+.+++|+   ..
T Consensus       158 ~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~---~-~~~~--~~~~~~~~---~~  226 (332)
T KOG1677|consen  158 EELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHP---Y-PVSR--NPQPQSYG---LT  226 (332)
T ss_pred             ccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCC---c-cccc--cccccccc---hh
Confidence            8876322  34567788899999999999999999999999999998654322111   1 1111  22344454   34


Q ss_pred             ccccccCCCC-CCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCchhhhccCCCCcccCCCCCCCCCCCCCCCccccc
Q 047248          202 WSRASFIPSP-RWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSF  280 (439)
Q Consensus       202 ~~~~~~~p~~-~~~~~~~y~p~~~~~g~~~~~~w~~y~~~~~~~~s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~  280 (439)
                      |.+..++... .++-  .|.+...+++++|...-.+..                 .....      ..            
T Consensus       227 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~-----------------~~~~~------~~------------  269 (332)
T KOG1677|consen  227 ASRSSLLNQQSKLQQ--PFAPSGLSESVLPRSSQQNLL-----------------PQGLR------SS------------  269 (332)
T ss_pred             hcchhhccccccccc--cccccccccccCcCCcccccc-----------------ccccc------cc------------
Confidence            5555544432 1111  122222334444311000000                 00000      00            


Q ss_pred             cCCCcccccccccccccCCCCCCCccchhhhhcCCCCCCCCcccCCCCCcCCCCCCcccCCCCCCCCCCCcCCccccccc
Q 047248          281 RSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYG  360 (439)
Q Consensus       281 ~~~~~~~~~~~~q~~~~~perp~~~~C~~y~ktG~C~~G~~Ckf~Hp~~~~~~~~~~~l~~~g~p~r~~~~~C~~Y~~~G  360 (439)
                       ....+.+.....+++.+++++.+++|++ |++|             .+++            +|+|++...|..|+++|
T Consensus       270 -~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~-------------~~~l------------~~~~~~~~~~~~~~~~~  322 (332)
T KOG1677|consen  270 -SSSHPSGSQENVNENGFRARPEQPECRS-MKSG-------------ENRL------------LPLRPGPGACTLFSRYG  322 (332)
T ss_pred             -cccccccchhccccccCcCCCCCCccch-hccc-------------cccc------------cCCCCCccccccccccc
Confidence             0000111123346788999999999999 9999             2221            78999999999999999


Q ss_pred             CCCCCCCCCC
Q 047248          361 ICKFGPSCKF  370 (439)
Q Consensus       361 ~Ck~G~~CkF  370 (439)
                      +|+||..|+|
T Consensus       323 ~~~~~~~~~~  332 (332)
T KOG1677|consen  323 SCKFGPLCKF  332 (332)
T ss_pred             ccCCCCcCCC
Confidence            9999999997

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 8e-15
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 8e-14
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 4e-13
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 1e-04
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 7e-04
2rhk_C72 Cleavage and polyadenylation specificity factor su 2e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 6e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 4e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 4e-07
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 4e-07
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 5e-06
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 7e-06
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 2e-05
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 2e-04
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 5e-04
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 68.4 bits (167), Expect = 8e-15
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
           C+ Y ++G C++GA C+F H        G   L       +     C  +   G+C +GS
Sbjct: 15  CRTYSESGRCRYGAKCQFAH--------GLGELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 160 TCKFHHPQ 167
            C F H  
Sbjct: 67  RCHFIHNP 74
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.45
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.43
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.43
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.38
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.31
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.22
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.14
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.14
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.09
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 99.03
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.92
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.88
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.84
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.8
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.78
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.7
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 98.56
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 97.3
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.95
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 97.22
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.74
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 96.57
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 94.78
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 93.78
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 91.77
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 91.65
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.45  E-value=4.6e-14  Score=113.69  Aligned_cols=68  Identities=29%  Similarity=0.675  Sum_probs=56.9

Q ss_pred             CCCcCccchhhcCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcCcccc
Q 047248           50 PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGR  129 (439)
Q Consensus        50 pg~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~~~~~~  129 (439)
                      ....+|+||++ |.|++|++|+|+|+....                ++++|+||+++|.|. |++|+|.|......    
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~----   65 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMPECYFYSKFGECS-NKECPFLHIDPESK----   65 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS----
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCccccccC----------------cCCCCcccCCCCccC-CCCeeccCCCcccc----
Confidence            34579999998 999999999999997642                357899999999999 99999999976543    


Q ss_pred             ccccccCCCCcccccccccccccc
Q 047248          130 VSLNVLGYPLRPNEIECAYYLRTG  153 (439)
Q Consensus       130 v~~n~~G~P~r~~~~~C~~y~~~G  153 (439)
                                   ..+|.+|. .|
T Consensus        66 -------------~~~C~~f~-~g   75 (77)
T 2d9n_A           66 -------------IKDCPWSG-PS   75 (77)
T ss_dssp             -------------CSSSSCCT-TT
T ss_pred             -------------CCCCcccc-cC
Confidence                         45799998 44
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.001
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.004
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPV 334
           C+ + ++G CK+G  C+F H    L  +
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFHELRSL 36
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.4
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.35
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.29
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.09
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.07
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.06
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.53
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.41
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.15
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.09
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 88.42
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 84.98
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.8e-08  Score=66.20  Aligned_cols=33  Identities=30%  Similarity=0.676  Sum_probs=30.3

Q ss_pred             CCCCccchhhhhcCCCCCCCCcccCCCCCcCCC
Q 047248          301 RPGQPECQFYMKTGDCKFGAVCRFHHPRERLLP  333 (439)
Q Consensus       301 rp~~~~C~~y~ktG~C~~G~~Ckf~Hp~~~~~~  333 (439)
                      ++++.+|++|.++|.|+||+.|+|+|+.+++++
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            678999999999999999999999999998764
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure